Psyllid ID: psy16556

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI
Secondary Structure (PSIPRED)
cEEEEccccccccccEEEEccccEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEccEccEccccEcEEEEEHHHEEEccccccHHHHHcHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHcc
Coil and Loop (DISEMBL)
mvfcatpphhgnlsqFYKHAADFcyklpdhltleegalleplavgvhackrsgvglGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYvgirifpykki
Flexible Loop (DISEMBL)
mvfcatpphhgNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGirifpykki
Low Complexity Region (SEG)
MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI
Disordered region (IsUnstruct)
********HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY***
Disordered Region (DISOPRED)
MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI
Disordered Region (DISEMBL)
MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI
Disordered Region (DISPRO)
MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q58D31	356	Sorbitol dehydrogenase OS	yes	N/A	0.98	0.275	0.612	9e-30
P07846	354	Sorbitol dehydrogenase OS	N/A	N/A	0.98	0.276	0.612	1e-29
Q00796	357	Sorbitol dehydrogenase OS	yes	N/A	0.98	0.274	0.612	1e-28
Q5R5F3	357	Sorbitol dehydrogenase OS	yes	N/A	0.98	0.274	0.602	2e-28
P27867	357	Sorbitol dehydrogenase OS	yes	N/A	0.98	0.274	0.591	2e-28
Q64442	357	Sorbitol dehydrogenase OS	yes	N/A	0.98	0.274	0.581	3e-28
Q4R639	357	Sorbitol dehydrogenase OS	N/A	N/A	1.0	0.280	0.59	8e-28
Q1PSI9	366	L-idonate 5-dehydrogenase	no	N/A	0.86	0.234	0.528	2e-22
Q02912	348	Sorbitol dehydrogenase OS	N/A	N/A	0.92	0.264	0.478	3e-21
Q5GN51	358	D-xylulose reductase A OS	yes	N/A	0.86	0.240	0.540	2e-20

>sp|Q58D31|DHSO_BOVIN Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 75/98 (76%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           FCATPP  GNL +FYKH A+FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG  VLV
Sbjct: 118 FCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLV 177

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             AGPIGLV++LAAKA GA  + V      R+   K++
Sbjct: 178 CGAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEV 215

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4

>sp|P07846|DHSO_SHEEP Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 74/98 (75%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           FCATPP  GNL +FYKH A+FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG  VLV
Sbjct: 116 FCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLV 175

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             AGPIGLV +LAAKA GA  + V      R+   K++
Sbjct: 176 CGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEV 213

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Ovis aries (taxid: 9940)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 72/98 (73%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  VLV
Sbjct: 119 FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLV 178

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             AGPIG+VT+L AKA GA  + V      R+   K+I
Sbjct: 179 CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 216

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5R5F3|DHSO_PONAB Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 72/98 (73%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           FCATPP  GNL +FYKH A FCYKLPD++T EEGA++EPL+VG+HAC+R GV LG  VLV
Sbjct: 119 FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLV 178

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             AGPIG+VT+L AKA GA  + V      R+   K+I
Sbjct: 179 CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 216

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P27867|DHSO_RAT Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 72/98 (73%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           FCATPP  GNL +FYKH+ADFCYKLPD +T EEGAL+EPL+VG++AC+R  V LG  VLV
Sbjct: 119 FCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLV 178

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             AGPIG+VT+L AKA GA  + V      R+   K++
Sbjct: 179 CGAGPIGIVTLLVAKAMGASQVVVIDLSASRLAKAKEV 216

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q64442|DHSO_MOUSE Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 71/98 (72%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           FCATPP  GNL +FYKH ADFCYKLPD +T EEGAL+EPL+VG++AC+R  V LG  VLV
Sbjct: 119 FCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLV 178

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             AGP+G+VT+L AKA GA  + V      R+   K++
Sbjct: 179 CGAGPVGMVTLLVAKAMGAAQVVVTDLSASRLTKAKEV 216

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q4R639|DHSO_MACFA Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 73/100 (73%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  V
Sbjct: 117 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRV 176

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           LV  AGPIG+V++L AKA GA  + V      R+   K+I
Sbjct: 177 LVCGAGPIGVVSLLVAKAMGAAQVVVTDLSAPRLSKAKEI 216

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/87 (52%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           M F  +PP +G+L+    H ++ C+KLPD+++LEEGA+ EPL+VG+HAC+R+ VG  T+V
Sbjct: 128 MKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNV 187

Query: 61  LVLSAGPIGLVTILAAKAYGA-RVICV 86
           L++ +GPIGLVT+LAA+A+GA R++ V
Sbjct: 188 LIMGSGPIGLVTMLAARAFGAPRIVLV 214

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q02912|DHSO_BOMMO Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           +C++    GNL ++YKH ADFC+KLPD+LT+EEGA ++PLA+ +HAC R+ + LG+ +++
Sbjct: 114 YCSSMGAPGNLCRYYKHVADFCHKLPDNLTMEEGAAVQPLAIVIHACNRAKITLGSKIVI 173

Query: 63  LSAGPIGLVTILAAKAYGARVICVCKYVGIRI 94
           L AGPIG++  ++AKA GA  I +   V  R+
Sbjct: 174 LGAGPIGILCAMSAKAMGASKIILTDVVQSRL 205

Bombyx mori (taxid: 7091)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5GN51|XYL2_ASPNG D-xylulose reductase A OS=Aspergillus niger GN=xdhA PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           M F ATPP+ G L+++Y    DFCYKLP+ +TL+EGA++EPL+V VH  K++G+  G SV
Sbjct: 119 MAFAATPPYDGTLAKYYVLPEDFCYKLPESITLQEGAIMEPLSVAVHIVKQAGINPGQSV 178

Query: 61  LVLSAGPIGLVTILAAKAYGA-RVICV 86
           +V  AGP+GL+    AKAYGA +VI V
Sbjct: 179 VVFGAGPVGLLCCAVAKAYGASKVIAV 205

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Aspergillus niger (taxid: 5061)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
195110223	638	GI22938 [Drosophila mojavensis] gi|19391	0.94	0.147	0.680	1e-33
312285788	227	hypothetical protein [Bactrocera oleae]	1.0	0.440	0.67	2e-33
195499907	360	GE26061 [Drosophila yakuba] gi|194183248	1.0	0.277	0.66	4e-33
194902172	360	GG17814 [Drosophila erecta] gi|190652326	1.0	0.277	0.66	4e-33
17737897	360	sorbitol dehydrogenase-2 [Drosophila mel	1.0	0.277	0.66	4e-33
195329989	360	GM23911 [Drosophila sechellia] gi|194120	1.0	0.277	0.66	4e-33
195452032	363	GK13991 [Drosophila willistoni] gi|19416	1.0	0.275	0.65	1e-32
195571879	360	GD18723 [Drosophila simulans] gi|1941998	1.0	0.277	0.65	2e-32
307204829	350	Sorbitol dehydrogenase [Harpegnathos sal	1.0	0.285	0.66	4e-32
332021414	350	Sorbitol dehydrogenase [Acromyrmex echin	1.0	0.285	0.66	6e-32

>gi|195110223|ref|XP_001999681.1| GI22938 [Drosophila mojavensis] gi|193916275|gb|EDW15142.1| GI22938 [Drosophila mojavensis]

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/94 (68%), Positives = 80/94 (85%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAADFC+KLPDH+T+EEGALLEPL+VGVHACKR+GV LG+ V
Sbjct: 391 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGALLEPLSVGVHACKRAGVSLGSRV 450

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI 94
           L+L AGPIGLVT+L A++ GA  I +   V  R+
Sbjct: 451 LILGAGPIGLVTLLVAQSMGATEILITDLVQHRL 484

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312285788|gb|ADQ64584.1| hypothetical protein [Bactrocera oleae]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           M+FCATPP+ GNL+++YKHAADFCYKLPDH+T+EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct: 113 MIFCATPPYDGNLTRYYKHAADFCYKLPDHVTMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           LVL AGPIGLVT+LAA+A GA  + +   V  R+   K++
Sbjct: 173 LVLGAGPIGLVTLLAAQAMGAEQVMITDLVQDRLDVAKEL 212

Source: Bactrocera oleae

Species: Bactrocera oleae

Genus: Bactrocera

Family: Tephritidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195499907|ref|XP_002097147.1| GE26061 [Drosophila yakuba] gi|194183248|gb|EDW96859.1| GE26061 [Drosophila yakuba]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 85/100 (85%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAADFC+KLPDH+++EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct: 113 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+LAA+A GA  I +   V  R+   K++
Sbjct: 173 LILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKEL 212

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194902172|ref|XP_001980623.1| GG17814 [Drosophila erecta] gi|190652326|gb|EDV49581.1| GG17814 [Drosophila erecta]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 85/100 (85%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAADFC+KLPDH+++EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct: 113 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+LAA+A GA  I +   V  R+   K++
Sbjct: 173 LILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKEL 212

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17737897|ref|NP_524311.1| sorbitol dehydrogenase-2 [Drosophila melanogaster] gi|4100630|gb|AAD00903.1| sorbitol dehydrogenase [Drosophila melanogaster] gi|7299382|gb|AAF54573.1| sorbitol dehydrogenase-2 [Drosophila melanogaster] gi|16198265|gb|AAL13960.1| LD47736p [Drosophila melanogaster]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 85/100 (85%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAADFC+KLPDH+++EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct: 113 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+LAA+A GA  I +   V  R+   K++
Sbjct: 173 LILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKEL 212

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195329989|ref|XP_002031691.1| GM23911 [Drosophila sechellia] gi|194120634|gb|EDW42677.1| GM23911 [Drosophila sechellia]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 85/100 (85%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAADFC+KLPDH+++EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct: 113 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+LAA+A GA  I +   V  R+   K++
Sbjct: 173 LILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKEL 212

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195452032|ref|XP_002073183.1| GK13991 [Drosophila willistoni] gi|194169268|gb|EDW84169.1| GK13991 [Drosophila willistoni]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 84/100 (84%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAADFC+KLPDH+++EEGALLEPL+VGVHAC+R GVGLG+ V
Sbjct: 116 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRGGVGLGSKV 175

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+LAA++ GA  I +   V  R+   K++
Sbjct: 176 LILGAGPIGLVTLLAAQSMGASEILITDLVQSRLDVAKEL 215

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195571879|ref|XP_002103928.1| GD18723 [Drosophila simulans] gi|194199855|gb|EDX13431.1| GD18723 [Drosophila simulans]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 84/100 (84%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP+ GNL+++YKHAAD C+KLPDH+++EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct: 113 MVFCATPPYDGNLTRYYKHAADLCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+LAA+A GA  I +   V  R+   K++
Sbjct: 173 LILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKEL 212

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204829|gb|EFN83387.1| Sorbitol dehydrogenase [Harpegnathos saltator]

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 81/100 (81%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           MVFCATPP HG+L +FYKHAADFC+KLPDH++LEEGALLEPL+VGVHACKR  VG+G+ V
Sbjct: 113 MVFCATPPVHGSLRRFYKHAADFCFKLPDHVSLEEGALLEPLSVGVHACKRGSVGIGSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+L AKA GA  + +   +  R+   KK+
Sbjct: 173 LILGAGPIGLVTLLVAKAMGASKVVITDIIENRLKIAKKL 212

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021414|gb|EGI61782.1| Sorbitol dehydrogenase [Acromyrmex echinatior]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 81/100 (81%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           +VFCATPP HGNL +FYKHAADFC+KLPDH++LEEGALLEPL+VGVHACKR  VG+ + V
Sbjct: 113 VVFCATPPVHGNLRRFYKHAADFCFKLPDHISLEEGALLEPLSVGVHACKRGEVGISSKV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           L+L AGPIGLVT+L AKA GA+ I +   +  R+   KK+
Sbjct: 173 LILGAGPIGLVTLLVAKAMGAKKIVITDILQSRLNIAKKL 212

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
FB|FBgn0022359	360	Sodh-2 "Sorbitol dehydrogenase	1.0	0.277	0.66	5.2e-33
FB|FBgn0024289	360	Sodh-1 "Sorbitol dehydrogenase	1.0	0.277	0.65	7.7e-32
UNIPROTKB|F1PXG0	356	SORD "Uncharacterized protein"	0.98	0.275	0.612	2.7e-29
UNIPROTKB|Q58D31	356	SORD "Sorbitol dehydrogenase"	0.98	0.275	0.612	7.1e-29
UNIPROTKB|P07846	354	SORD "Sorbitol dehydrogenase"	0.98	0.276	0.612	9.1e-29
ZFIN|ZDB-GENE-040426-1231	354	sord "sorbitol dehydrogenase"	0.98	0.276	0.602	1.2e-28
UNIPROTKB|H0YLA4	336	SORD "Sorbitol dehydrogenase"	0.98	0.291	0.612	3.1e-28
UNIPROTKB|Q00796	357	SORD "Sorbitol dehydrogenase"	0.98	0.274	0.612	3.1e-28
RGD|3734	357	Sord "sorbitol dehydrogenase"	0.98	0.274	0.591	3.9e-28
UNIPROTKB|Q5R5F3	357	SORD "Sorbitol dehydrogenase"	0.98	0.274	0.602	5e-28

FB|FBgn0022359 Sodh-2 "Sorbitol dehydrogenase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 66/100 (66%), Positives = 85/100 (85%)

Query:     1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
             MVFCATPP+ GNL+++YKHAADFC+KLPDH+++EEGALLEPL+VGVHAC+R+GVGLG+ V
Sbjct:   113 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKV 172

Query:    61 LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             L+L AGPIGLVT+LAA+A GA  I +   V  R+   K++
Sbjct:   173 LILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKEL 212

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0024289 Sodh-1 "Sorbitol dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 65/100 (65%), Positives = 83/100 (83%)

Query:     1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
             MVFCATPP+ GNL+++YKHAADFC+KLPDH+T+EEGALLEPL+VGVHACKR+ V LG+ V
Sbjct:   113 MVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGALLEPLSVGVHACKRAEVTLGSKV 172

Query:    61 LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
             L+L AGPIGLVT++AA+A GA  I +   V  R+   K++
Sbjct:   173 LILGAGPIGLVTLMAAQAMGASEILITDLVQQRLDVAKEL 212

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1PXG0 SORD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 60/98 (61%), Positives = 74/98 (75%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL QFYKH ADFCYKLPD++T EEGAL+EPL+VG+HAC+R+G+ LG  VLV
Sbjct:   118 FCATPPDDGNLCQFYKHNADFCYKLPDNVTYEEGALIEPLSVGIHACRRAGITLGNKVLV 177

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIGLVT++ AKA GA  + V      R+   K++
Sbjct:   178 CGAGPIGLVTLIVAKAMGAGQVLVTDLSASRLSKAKEV 215

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q58D31 SORD "Sorbitol dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 60/98 (61%), Positives = 75/98 (76%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL +FYKH A+FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG  VLV
Sbjct:   118 FCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLV 177

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIGLV++LAAKA GA  + V      R+   K++
Sbjct:   178 CGAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEV 215

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P07846 SORD "Sorbitol dehydrogenase" [Ovis aries (taxid:9940)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 60/98 (61%), Positives = 74/98 (75%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL +FYKH A+FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG  VLV
Sbjct:   116 FCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLV 175

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIGLV +LAAKA GA  + V      R+   K++
Sbjct:   176 CGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEV 213

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

ZFIN|ZDB-GENE-040426-1231 sord "sorbitol dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 59/98 (60%), Positives = 76/98 (77%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL ++YKH+A FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG+SV V
Sbjct:   115 FCATPPDDGNLCRYYKHSASFCYKLPDNVTYEEGALIEPLSVGIHACRRAGVTLGSSVFV 174

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIGLV++LAAKA GA  + +      R+   K+I
Sbjct:   175 CGAGPIGLVSLLAAKAMGASQVIISDLSSDRLAKAKEI 212

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H0YLA4 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/98 (61%), Positives = 72/98 (73%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  VLV
Sbjct:    98 FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLV 157

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIG+VT+L AKA GA  + V      R+   K+I
Sbjct:   158 CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 195

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q00796 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/98 (61%), Positives = 72/98 (73%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  VLV
Sbjct:   119 FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLV 178

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIG+VT+L AKA GA  + V      R+   K+I
Sbjct:   179 CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 216

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;IDA

GO:0008270 "zinc ion binding" evidence=ISS;IDA

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006062 "sorbitol catabolic process" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=IDA

GO:0051164 "L-xylitol metabolic process" evidence=IDA

GO:0005615 "extracellular space" evidence=TAS

GO:0030317 "sperm motility" evidence=ISS;NAS

GO:0031514 "motile cilium" evidence=ISS

RGD|3734 Sord "sorbitol dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/98 (59%), Positives = 72/98 (73%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL +FYKH+ADFCYKLPD +T EEGAL+EPL+VG++AC+R  V LG  VLV
Sbjct:   119 FCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLV 178

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIG+VT+L AKA GA  + V      R+   K++
Sbjct:   179 CGAGPIGIVTLLVAKAMGASQVVVIDLSASRLAKAKEV 216

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0006060 "sorbitol metabolic process" evidence=ISO

GO:0006062 "sorbitol catabolic process" evidence=ISO

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0008270 "zinc ion binding" evidence=ISO;IDA

GO:0009725 "response to hormone stimulus" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO;ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=ISO

GO:0046686 "response to cadmium ion" evidence=IDA

GO:0046688 "response to copper ion" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=ISO

GO:0051164 "L-xylitol metabolic process" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q5R5F3 SORD "Sorbitol dehydrogenase" [Pongo abelii (taxid:9601)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/98 (60%), Positives = 72/98 (73%)

Query:     3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
             FCATPP  GNL +FYKH A FCYKLPD++T EEGA++EPL+VG+HAC+R GV LG  VLV
Sbjct:   119 FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLV 178

Query:    63 LSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
               AGPIG+VT+L AKA GA  + V      R+   K+I
Sbjct:   179 CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 216

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q64442	DHSO_MOUSE	1, ., 1, ., 1, ., 1, 4	0.5816	0.98	0.2745	yes	N/A
A2QY54	XYL2_ASPNC	1, ., 1, ., 1, ., 9	0.5402	0.86	0.2402	yes	N/A
P27867	DHSO_RAT	1, ., 1, ., 1, ., 1, 4	0.5918	0.98	0.2745	yes	N/A
Q5ARL6	XYL2_EMENI	1, ., 1, ., 1, ., 9	0.5057	0.86	0.2395	yes	N/A
Q92MT4	XYLD_RHIME	1, ., 1, ., 1, ., 9	0.5128	0.78	0.2254	yes	N/A
Q58D31	DHSO_BOVIN	1, ., 1, ., 1, ., 1, 4	0.6122	0.98	0.2752	yes	N/A
Q07786	DHSO2_YEAST	1, ., 1, ., 1, ., 1, 4	0.5185	0.81	0.2268	yes	N/A
Q00796	DHSO_HUMAN	1, ., 1, ., 1, ., 1, 4	0.6122	0.98	0.2745	yes	N/A
Q5GN51	XYL2_ASPNG	1, ., 1, ., 1, ., 9	0.5402	0.86	0.2402	yes	N/A
P35497	DHSO1_YEAST	1, ., 1, ., 1, ., 1, 4	0.5185	0.81	0.2268	yes	N/A
Q5R5F3	DHSO_PONAB	1, ., 1, ., 1, ., 1, 4	0.6020	0.98	0.2745	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-48
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	9e-35
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-24
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	7e-20
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	8e-20
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-19
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	4e-18
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	1e-16
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-16
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-16
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-15
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	5e-13
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	3e-11
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	6e-10
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	9e-10
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	9e-10
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-09
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	3e-09
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	2e-08
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	2e-08
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-07
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	1e-07
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-07
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-07
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-07
cd05281	341	cd05281, TDH, Threonine dehydrogenase	4e-07
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	4e-07
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-06
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-06
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-06
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	3e-06
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	3e-06
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	3e-06
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	8e-06
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	9e-06
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	1e-05
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-05
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	8e-05
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	9e-05
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	1e-04
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-04
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-04
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	4e-04
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	6e-04
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	9e-04
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	0.001
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	0.001
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	0.002
smart00829	287	smart00829, PKS_ER, Enoylreductase	0.002
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	0.002
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	0.002
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	0.003
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	0.004
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	0.004

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  156 bits (397), Expect = 2e-48
 Identities = 52/87 (59%), Positives = 66/87 (75%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           M F ATPP  G L ++  H ADFC+KLPD+++LEEGAL+EPL+VGVHAC+R+GV  G +V
Sbjct: 107 MRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGVRPGDTV 166

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVC 87
           LV  AGPIGL+T   AKA+GA  + V 
Sbjct: 167 LVFGAGPIGLLTAAVAKAFGATKVVVT 193

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score =  121 bits (305), Expect = 9e-35
 Identities = 52/87 (59%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           M F ATPP HG+L+    H AD C+KLP++++LEEGA+ EPL+VGVHAC+R+ +G  T+V
Sbjct: 126 MKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNV 185

Query: 61  LVLSAGPIGLVTILAAKAYGA-RVICV 86
           LV+ AGPIGLVT+LAA+A+GA R++ V
Sbjct: 186 LVMGAGPIGLVTMLAARAFGAPRIVIV 212

Length = 364

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 93.8 bits (234), Expect = 2e-24
 Identities = 40/66 (60%), Positives = 47/66 (71%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG 80
           A   +KLPD++ LEE AL+EPLAV  HA +RSG   G + LVL AGPIGL+TILA KA G
Sbjct: 137 AYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAG 196

Query: 81  ARVICV 86
           A  I V
Sbjct: 197 ASKIIV 202

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 81.5 bits (202), Expect = 7e-20
 Identities = 35/81 (43%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 8   PH-HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAG 66
           PH  G   ++    A  C  LPD L+L   AL EPLAV +HA  R+G   G  VLV  AG
Sbjct: 116 PHVQGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAG 175

Query: 67  PIGLVTILAAKAYGARVICVC 87
           PIG + + AA+  GA  I   
Sbjct: 176 PIGALVVAAARRAGAAEIVAT 196

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 81.5 bits (202), Expect = 8e-20
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 24  CYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARV 83
             K+PDH+  EE A++EP AV +HA + +G+ LG +V+V+ AG IGL+ I   K  GA+ 
Sbjct: 127 LIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKR 186

Query: 84  ICV 86
           +  
Sbjct: 187 VIA 189

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 79.3 bits (196), Expect = 2e-19
 Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSG-VGLGT 58
                     G  +++    AD    LPD L+LEE ALL EPLA   HA +R+G +  G 
Sbjct: 77  GGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGD 136

Query: 59  SVLVLSAGPIGLVTILAAKAYGARVICVC 87
           +VLVL AG +GL+    AKA GARVI   
Sbjct: 137 TVLVLGAGGVGLLAAQLAKAAGARVIVTD 165

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 76.8 bits (190), Expect = 4e-18
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 24  CYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARV 83
              +P+ L+L++ AL+EPLA+G HA +R+GV  G +VLV+ AGPIGL  I  AKA GARV
Sbjct: 127 ALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARV 186

Query: 84  ICV 86
           I V
Sbjct: 187 IVV 189

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 31/73 (42%), Positives = 40/73 (54%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG 80
           A   YK+PD+L+ EE AL EPL+  VH     G+  G SVLV  AGPIGL+     K  G
Sbjct: 124 AKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG 183

Query: 81  ARVICVCKYVGIR 93
           A  + V +    +
Sbjct: 184 ASRVTVAEPNEEK 196

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 71.9 bits (177), Expect = 2e-16
 Identities = 31/63 (49%), Positives = 46/63 (73%)

Query: 25  YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
            KLPD+++ EE AL+EPLA  ++A +++G+  G +VLV+ AGPIGL+  + AKA GAR +
Sbjct: 134 LKLPDNVSFEEAALVEPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKV 193

Query: 85  CVC 87
            V 
Sbjct: 194 IVS 196

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 71.2 bits (175), Expect = 4e-16
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query: 5   ATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLS 64
            +P   G  +++   +     ++PD L++E+ AL EPLAVG+HA +R+ +  G   LV+ 
Sbjct: 110 LSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIG 169

Query: 65  AGPIGLVTILAAKAYGARVICV 86
            GPIGL  I A KA G   I  
Sbjct: 170 CGPIGLAVIAALKARGVGPIVA 191

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 6   TPPHHGNLSQFYKHAADFCYK-LPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVL 63
                G  +++ +  ADF    LPD +  E  AL EPLA   H   +R+ V  G +V+V+
Sbjct: 116 GGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVV 175

Query: 64  SAGPIGLVTILAAKAYGARVICVC 87
            AGPIGL+ I  AK  GA V+ V 
Sbjct: 176 GAGPIGLLAIALAKLLGASVVIVV 199

Length = 350

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 24  CYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR 82
            ++LP++L+LE  AL EPLAV VHA  +RSG+  G +V+V   GPIGL+    AK  GA 
Sbjct: 131 LHELPENLSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT 190

Query: 83  VICV 86
           V+ V
Sbjct: 191 VVVV 194

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 25  YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
           +K+PD +  E+  L+EPLA  +HA  R+ +     V++  AGP+GL  I AA+    + +
Sbjct: 143 HKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKL 202

Query: 85  CV 86
            V
Sbjct: 203 IV 204

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 26  KLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
            LPD L  E  AL    A  ++  + +   LG  V V+  G +GL+    AKA GAR +
Sbjct: 67  PLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREV 125

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 53.5 bits (129), Expect = 9e-10
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGP 67
             G  +++          LPD L+  +GALL   +    HA +R GV    +VLV+ AGP
Sbjct: 115 RDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGP 174

Query: 68  IGLVTILAAKAYGARVI 84
           +GL  ++ A+A GA  +
Sbjct: 175 VGLGALMLARALGAEDV 191

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 53.4 bits (129), Expect = 9e-10
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 10  HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHA-------CKRSGVGLGTSVLV 62
           HG + +++    ++  K+P  L  + G LLEPL+V   A        KR         LV
Sbjct: 120 HGFMREYFVDDPEYLVKVPPSL-ADVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALV 178

Query: 63  LSAGPIGLVTILAAKAYGARVICV 86
           L AGPIGL+  L  +  G  V  +
Sbjct: 179 LGAGPIGLLAALLLRLRGFEVYVL 202

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 21  ADF-CYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA 78
           AD    K+PD L  E+  +L + L  G H  + +G+  G++V V+ AGP+GL  +  A+ 
Sbjct: 130 ADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARL 189

Query: 79  YGARVICVC 87
            GA  I   
Sbjct: 190 LGAARIIAV 198

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 25  YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
           + LP  + +E+GA +EP+ VG+HA   +    G +V+++ AG IGL+ I  A A GA+ +
Sbjct: 129 FALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSV 188

Query: 85  CV 86
             
Sbjct: 189 TA 190

Length = 347

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 8   PH-HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAG 66
           PH  G  +++       C   P+    +  A  EPLAV +HA  ++G   G  V V   G
Sbjct: 120 PHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVG 179

Query: 67  PIGLVTILAAKAYGARVICVC 87
           PIG + + A K  GA  I VC
Sbjct: 180 PIGCLIVAAVKTLGAAEI-VC 199

Length = 343

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 25  YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR 82
           +K+PD +  +  A+ +P    VH      + +G  VL+  AGPIG++    AK  GAR
Sbjct: 133 WKIPDDIPDDLAAIFDPFGNAVHTALSFDL-VGEDVLITGAGPIGIMAAAVAKHVGAR 189

Length = 341

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVGV---HACKRSGVGLGTSVLVLSAGPIGLVTILAAK 77
           A +  K+P+ L L E A L  L  G+    A K++ V  G  V V+ AG +G + +  AK
Sbjct: 130 ARYVVKIPEGLDLAEAAPL--LCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAK 187

Query: 78  AYGARVI 84
           A GA VI
Sbjct: 188 AMGAEVI 194

Length = 339

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 21  ADF-CYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA 78
           AD   +K+PD L+ E+   L + L  G HA + + V  G +V V   GP+GL    +AK 
Sbjct: 147 ADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKL 206

Query: 79  YGA-RVICV 86
            GA RVI +
Sbjct: 207 LGAERVIAI 215

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 26  KLPDHLTLEEGALLE-PLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV 83
           KLPD+++ E  AL    +   VHA KR+GV  G +VLV  A G +G+  I  AKA GARV
Sbjct: 131 KLPDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARV 190

Query: 84  ICV 86
           I V
Sbjct: 191 IAV 193

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 11  GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGL 70
           G  +++    A   +K P  +  E   + EPL   VH    +G   G SVLV  AGPIGL
Sbjct: 117 GCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTV-LAGPISGKSVLVTGAGPIGL 175

Query: 71  VTILAAKAYGARVICV 86
           + I  AKA GA  + V
Sbjct: 176 MAIAVAKASGAYPVIV 191

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 25  YKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARV 83
            KLPD L+ E   LL + L  G    KR+ V  G +V V+  GP+GL  +L+A+  GA  
Sbjct: 135 LKLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAAR 194

Query: 84  I 84
           +
Sbjct: 195 V 195

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 25  YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
           +K    +  E  ++ EPL   VH      V  G SVL+   GPIGL+ I  AKA GA ++
Sbjct: 133 WKNDKDIPPEIASIQEPLGNAVHTVLAGDV-SGKSVLITGCGPIGLMAIAVAKAAGASLV 191

Query: 85  CV 86
             
Sbjct: 192 IA 193

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 3   FCATPPHHGNLSQF-YKHAADFCYKLPDHLTLEEGAL-LEPLAVGVHACKRSG-VGLGTS 59
            C  P   G  ++  Y        ++PD++  E  A     LA  + A  R+G VG G +
Sbjct: 121 SCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDT 180

Query: 60  VLVLSAGPIGLVTILAAKAYGA-RVICV 86
           V+V  AGP+GL  + AAK  GA RVI +
Sbjct: 181 VVVQGAGPLGLYAVAAAKLAGARRVIVI 208

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 11  GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGL 70
           G  +++    AD    LP  L   +    EPL   ++  +R  +  G +V V+ AG IGL
Sbjct: 85  GAFAEYDLADADHAVPLPSLL-DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGL 143

Query: 71  VTILAAKAYGARVICV 86
           + +  A A GAR +  
Sbjct: 144 LFLQLAAAAGARRVIA 159

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 2   VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HACK-RSGVGLGT 58
           V   T    G  ++     A   + LPD L+ EE A L P+  G   HA   R+ +  G 
Sbjct: 85  VVALTG--QGGFAEEVVVPAAAVFPLPDGLSFEEAAAL-PVTYGTAYHALVRRARLQPGE 141

Query: 59  SVLVL-SAGPIGLVTILAAKAYGARVI 84
           +VLVL +AG +GL  +  AKA GARVI
Sbjct: 142 TVLVLGAAGGVGLAAVQLAKALGARVI 168

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 25  YKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-R 82
             LPD LT E+  +L + ++ G H  + + + LG +V V   GP+GL+ +  A+  GA R
Sbjct: 134 APLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGR 193

Query: 83  VICV 86
           +I V
Sbjct: 194 IIAV 197

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPI 68
             G  +++     +  + +PD +  E+    EPLA  +   ++  +  G  V VL  G +
Sbjct: 108 RDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGKL 167

Query: 69  GLVTILAAKAYGARVICVCKY 89
           GL+        G  V+ V ++
Sbjct: 168 GLLIAQVLALTGPDVVLVGRH 188

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 9   HHGNLSQFYKHAADFCYKLPDHL-------TLEEGALLEPLAVGVHACKRSGVGL--GTS 59
             G  +++    A + +++ +           E GAL+EP +V  +     G G   G  
Sbjct: 147 ADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAY 206

Query: 60  VLVLSAGPIGLVTILAAKAYGA-RVICV 86
           V+V  AGPIGL  I  AKA GA +VI  
Sbjct: 207 VVVYGAGPIGLAAIALAKAAGASKVIAF 234

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 2   VFCATPPHH-GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV---HACKRSGV--- 54
           V+ A PP   G  +++     +   K P +L+ EE A L     G+    A    G    
Sbjct: 101 VWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASL--PYAGLTAWSALVNVGGLNP 158

Query: 55  --GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87
               G  VL+L   G +G   I   KA+GA V   C
Sbjct: 159 KNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTC 194

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 26  KLPDHLTLEEGALLEPLAVG--VHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR 82
           K+P +++ +EGA++ P   G      +R+GV  G +VLV  A G +G+  I  AKA GA+
Sbjct: 131 KVPPNVS-DEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAK 189

Query: 83  VICV 86
           VI V
Sbjct: 190 VIAV 193

Length = 334

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 2   VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGT 58
                    G  +++    AD+   LPD L+ EE A L PLA          R+G+  G 
Sbjct: 86  AALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAAL-PLAGLTAWLALFDRAGLKPGE 144

Query: 59  SVLVLSA-GPIGLVTILAAKAYGARVI 84
           +VLV  A G +G   I  AKA GA V+
Sbjct: 145 TVLVHGAAGGVGSAAIQLAKALGATVV 171

Length = 326

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 11  GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGL 70
           G  S++    A   +++PD +  +   ++EP  +  +   R+G       L+  AGP+GL
Sbjct: 115 GGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGL 174

Query: 71  VTILAAK-AYGARVICV 86
             +   K  Y  + + V
Sbjct: 175 TIVQVLKGVYNVKAVIV 191

Length = 339

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 7   PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHA----CKRSGVGLGTSVLV 62
            P  G L+++     +   + PDHL+ EE A L P A G+ A         +  G +VLV
Sbjct: 109 GPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATL-PCA-GLTAWNALFGLGPLKPGDTVLV 166

Query: 63  LSAGPIGLVTILAAKAYGARVI 84
              G + L  +  AKA GARVI
Sbjct: 167 QGTGGVSLFALQFAKAAGARVI 188

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVG--VHA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
           A    K+PD L+ EE A L P+A     +A    + +  G SVL+ +A G +G   I  A
Sbjct: 71  ARLVVKIPDSLSFEEAATL-PVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLA 129

Query: 77  KAYGARVICVC 87
           +  GA V    
Sbjct: 130 QHLGAEVFATV 140

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 9   HHGNLSQFYK-HAADF-CYKLPDHLTLEEGALLE-PLAVGVHA-CKRSGVGLGTSVLVLS 64
           H G+ +++     AD    +LPD +     A L    A    A   ++ V  G  V V  
Sbjct: 114 HPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHG 173

Query: 65  AGPIGLVTILAAKAYGARVICV 86
            G +GL  ++ A A GARVI V
Sbjct: 174 CGGVGLSAVMIASALGARVIAV 195

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 25  YKLPDHLTLEEGALLEPLAV--GVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGA 81
           +K+PD ++ E  A L P+A     HA K +G+G G +V+V  A G  G+  +  AK  GA
Sbjct: 130 FKIPDSISDELAASL-PVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGA 188

Query: 82  RVICV 86
            VI V
Sbjct: 189 EVIAV 193

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 24/102 (23%)

Query: 9   HHGNLSQFYKHAA---------DFCYKLPDHLTLEEGALLEPLAV-----GVHAC----- 49
            HG      ++ A         D   K+PD+++ EE A L P+ +      +        
Sbjct: 86  VHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATL-PVGLVTAALALFQKLGLPL 144

Query: 50  ---KRSGVGLGTSVLVLSAG-PIGLVTILAAKAYGARVICVC 87
              K S    G  VL+      +G + I  AK  G +VI   
Sbjct: 145 PPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA 186

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 10  HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HAC-KRSGVGLGTSVLVLSAG 66
            G  +++    A     +PD+L+ EE A   PL      H    R+ +  G +VLV  AG
Sbjct: 118 DGGYAEYVAVPARNLLPIPDNLSFEEAAAA-PLTFLTAWHMLVTRARLRPGETVLVHGAG 176

Query: 67  P-IGLVTILAAKAYGARVI 84
             +G   I  AK +GA VI
Sbjct: 177 SGVGSAAIQIAKLFGATVI 195

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 21  ADF-CYKLPDHLTLEEGALLEP--------LAVGVHACKRSGVGLGTSVLVLSAGPIGLV 71
           ADF   KLPD     +GA  +            G H  + +GV  G +V V  AGP+GL+
Sbjct: 136 ADFNLLKLPD----RDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLM 191

Query: 72  TILAAKAYGARVICVCKYV 90
              +A   GA  + V  +V
Sbjct: 192 AAYSAILRGASRVYVVDHV 210

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 10  HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG------VHACKRSGVGLGTSVLVL 63
           +G+ +QF    A      P HL+ EE A    + VG      +     + V  G +VL+ 
Sbjct: 143 YGSFAQFALVQATQLMPKPKHLSWEEAAA--YMLVGATAYRMLFGWNPNTVKPGDNVLIW 200

Query: 64  -SAGPIGLVTILAAKAYGARVICV 86
            ++G +G + I  A+A GA  + V
Sbjct: 201 GASGGLGSMAIQLARAAGANPVAV 224

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 6   TPPHHGNLSQFYKHA---ADFCYKLPDHLTLEEGALLEPLAV--GVHACKRS-GVGLGTS 59
              HH  +S F ++A        K+   + LE  AL    AV  GV A   + GV  G S
Sbjct: 136 EINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFG-CAVLTGVGAVVNTAGVRPGQS 194

Query: 60  VLVLSAGPIGLVTILAAKAYGARVI 84
           V V+  G +GL  +L A A GA  +
Sbjct: 195 VAVVGLGGVGLSALLGAVAAGASQV 219

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 26  KLPDHLTLEEG-----ALLEPLAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAY 79
            +PD +   +      A+L P     HA  R+G V  G +VLV+  G +GL  +  AKA 
Sbjct: 133 PVPDGVPFAQAAVATDAVLTPY----HAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAM 188

Query: 80  GARVICV 86
           GA VI V
Sbjct: 189 GAAVIAV 195

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 37  ALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVI 84
           AL + +  G HA   +GV  G++V+V+  G +GL  +LAAK  GA R+I
Sbjct: 149 ALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERII 197

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 21  ADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAY 79
             F Y +P+    EE A LL    +G  A K +G+  G  + +   G    + +  A+  
Sbjct: 131 ERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIARYQ 190

Query: 80  GARVICV 86
           GA V   
Sbjct: 191 GAEVFAF 197

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 35.4 bits (83), Expect = 0.002
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVG--VHA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
           A     +PD  + EE A + P+      +A    + +  G SVL+ +A G +G   I  A
Sbjct: 66  ARLVVPIPDGWSFEEAATV-PVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLA 124

Query: 77  KAYGARVIC 85
           +  GA V  
Sbjct: 125 RHLGAEVFA 133

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 26  KLPDHLTLEEGALLE-PLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-R 82
           K+     LE+  L+    + G  A    + V  G++  V   G +GL  I+  KA GA R
Sbjct: 151 KIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASR 210

Query: 83  VICV 86
           +I V
Sbjct: 211 IIAV 214

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 42  LAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
              G H    +GVG G++V +  AGP+GL    +A+  GA V+ V
Sbjct: 171 FPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIV 215

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 20  AADFCYKLPDHLTLEEGALLEPLAVGVHA----CKRSGVGLGTSVLVLSAG 66
            AD  + LPD ++ EE A        + A     +   +  G SVLV SA 
Sbjct: 100 PADQVFPLPDGMSFEEAAAF--PVNYLTAYYALFELGNLRPGQSVLVHSAA 148

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 8   PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPL---AVGVHAC-KRSGVGLGTSVLVL 63
              G  +        F +K+P+ L     A   PL    + V++  KR+GVG G  V V+
Sbjct: 120 ITQGGYADHIVVDERFVFKIPEGLDSAAAA---PLLCAGITVYSPLKRNGVGPGKRVGVV 176

Query: 64  SAGPIGLVTILAAKAYGARVI 84
             G +G + +  AKA GA V 
Sbjct: 177 GIGGLGHLAVKFAKALGAEVT 197

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 2   VFCATPP-HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC----KRSGVGL 56
           VF   PP   G L+++         K P+ ++ EE A L P+A G+ A         V  
Sbjct: 86  VFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAAL-PVA-GLTALQALRDAGKVKP 143

Query: 57  GTSVLVLSA-GPIGLVTILAAKAYGARVICVC 87
           G  VL+  A G +G   +  AKA GA V  VC
Sbjct: 144 GQRVLINGASGGVGTFAVQIAKALGAHVTGVC 175

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG0024|consensus	354		99.94
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.92
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.88
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.86
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.84
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.83
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.83
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.83
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.82
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.82
PLN02740	381	Alcohol dehydrogenase-like	99.81
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.81
KOG0023|consensus	360		99.8
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.8
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.8
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.79
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.79
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.79
PLN02827	378	Alcohol dehydrogenase-like	99.79
KOG1198|consensus	347		99.78
KOG0022|consensus	375		99.77
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.77
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.76
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.76
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.76
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.76
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.75
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.75
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.75
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.74
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.74
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.73
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.73
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.73
KOG1197|consensus	336		99.72
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.72
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.72
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.72
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.72
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.71
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.71
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.71
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.71
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.71
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.71
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.71
PRK10083	339	putative oxidoreductase; Provisional	99.71
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.7
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.7
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.7
PLN02702	364	L-idonate 5-dehydrogenase	99.7
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.7
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.69
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.69
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.69
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.69
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.69
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.68
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.68
PTZ00354	334	alcohol dehydrogenase; Provisional	99.67
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.67
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.67
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.67
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.67
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.67
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.66
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.66
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.66
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.66
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.66
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.66
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.66
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.66
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.66
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.66
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.65
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.65
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.65
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.65
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.65
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.64
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.64
KOG0025|consensus	354		99.64
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.64
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.64
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.64
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.64
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.63
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.63
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.63
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.63
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.63
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.63
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.62
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.61
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.61
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.61
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.6
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.6
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.59
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.59
KOG1202|consensus	2376		99.59
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.58
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.58
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.58
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.57
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.57
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.57
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.57
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.57
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.55
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.55
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.55
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.55
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.54
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.54
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.53
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.53
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.52
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.52
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.5
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.49
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.47
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.45
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.36
KOG1196|consensus	343		99.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.68
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.55
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.45
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.31
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.19
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.19
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.17
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.01
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.0
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.97
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.85
PLN02494	477	adenosylhomocysteinase	97.82
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.82
PRK08324	681	short chain dehydrogenase; Validated	97.79
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.72
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.71
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.65
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.62
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.61
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.6
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.58
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.54
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.5
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.5
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.5
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.48
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.45
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.44
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.43
PRK05993	277	short chain dehydrogenase; Provisional	97.39
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.37
PRK08017	256	oxidoreductase; Provisional	97.36
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.36
PRK06949	258	short chain dehydrogenase; Provisional	97.35
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.33
PRK06057	255	short chain dehydrogenase; Provisional	97.3
PRK05872	296	short chain dehydrogenase; Provisional	97.28
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.28
PRK04148	134	hypothetical protein; Provisional	97.28
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.26
PRK07814	263	short chain dehydrogenase; Provisional	97.26
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.25
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
PLN03209	576	translocon at the inner envelope of chloroplast su	97.24
PLN02780	320	ketoreductase/ oxidoreductase	97.24
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.23
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.23
PRK08339	263	short chain dehydrogenase; Provisional	97.22
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.21
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.21
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.2
PRK05866	293	short chain dehydrogenase; Provisional	97.2
PRK07326	237	short chain dehydrogenase; Provisional	97.19
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.19
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.18
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	97.17
PRK07831	262	short chain dehydrogenase; Provisional	97.17
PRK07062	265	short chain dehydrogenase; Provisional	97.17
PRK06139	330	short chain dehydrogenase; Provisional	97.16
PRK12828	239	short chain dehydrogenase; Provisional	97.15
PRK07060	245	short chain dehydrogenase; Provisional	97.15
PRK12829	264	short chain dehydrogenase; Provisional	97.14
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.14
PRK06180	277	short chain dehydrogenase; Provisional	97.14
PRK05867	253	short chain dehydrogenase; Provisional	97.13
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.13
PRK07576	264	short chain dehydrogenase; Provisional	97.13
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.13
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	97.13
PRK07825	273	short chain dehydrogenase; Provisional	97.12
PRK08703	239	short chain dehydrogenase; Provisional	97.11
PRK09072	263	short chain dehydrogenase; Provisional	97.11
PRK09291	257	short chain dehydrogenase; Provisional	97.11
PRK07890	258	short chain dehydrogenase; Provisional	97.11
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.11
PRK06841	255	short chain dehydrogenase; Provisional	97.1
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.09
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.09
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.08
PRK07063	260	short chain dehydrogenase; Provisional	97.08
PRK07677	252	short chain dehydrogenase; Provisional	97.08
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.07
PRK06500	249	short chain dehydrogenase; Provisional	97.06
PRK12939	250	short chain dehydrogenase; Provisional	97.06
PRK07035	252	short chain dehydrogenase; Provisional	97.06
PRK07478	254	short chain dehydrogenase; Provisional	97.06
PRK06194	287	hypothetical protein; Provisional	97.06
PRK06125	259	short chain dehydrogenase; Provisional	97.05
PRK08265	261	short chain dehydrogenase; Provisional	97.04
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.04
PRK06182	273	short chain dehydrogenase; Validated	97.03
PRK06172	253	short chain dehydrogenase; Provisional	97.02
PRK06196	315	oxidoreductase; Provisional	97.02
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.01
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.0
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.0
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.99
PRK09186	256	flagellin modification protein A; Provisional	96.99
PRK05854	313	short chain dehydrogenase; Provisional	96.97
PRK07067	257	sorbitol dehydrogenase; Provisional	96.97
PRK05875	276	short chain dehydrogenase; Provisional	96.97
PRK07109	334	short chain dehydrogenase; Provisional	96.96
PRK08628	258	short chain dehydrogenase; Provisional	96.95
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.95
PRK08643	256	acetoin reductase; Validated	96.94
PRK09242	257	tropinone reductase; Provisional	96.94
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.94
PRK07454	241	short chain dehydrogenase; Provisional	96.94
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.94
PRK07024	257	short chain dehydrogenase; Provisional	96.93
PRK06101	240	short chain dehydrogenase; Provisional	96.93
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.93
PRK06914	280	short chain dehydrogenase; Provisional	96.92
PRK07774	250	short chain dehydrogenase; Provisional	96.92
PRK06181	263	short chain dehydrogenase; Provisional	96.92
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.91
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.91
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.91
PRK07904	253	short chain dehydrogenase; Provisional	96.91
PRK05876	275	short chain dehydrogenase; Provisional	96.91
PRK05693	274	short chain dehydrogenase; Provisional	96.9
PRK06138	252	short chain dehydrogenase; Provisional	96.88
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.88
PRK08267	260	short chain dehydrogenase; Provisional	96.87
PRK06197	306	short chain dehydrogenase; Provisional	96.87
PRK05717	255	oxidoreductase; Validated	96.87
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.86
PRK08177	225	short chain dehydrogenase; Provisional	96.86
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.86
PRK08264	238	short chain dehydrogenase; Validated	96.85
PRK08226	263	short chain dehydrogenase; Provisional	96.85
PRK06847	375	hypothetical protein; Provisional	96.84
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.83
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.83
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.82
PRK08163	396	salicylate hydroxylase; Provisional	96.8
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.8
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.79
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.79
PLN00203	519	glutamyl-tRNA reductase	96.78
PRK07102	243	short chain dehydrogenase; Provisional	96.78
KOG1014|consensus	312		96.77
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.77
PRK08251	248	short chain dehydrogenase; Provisional	96.77
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.76
PRK06753	373	hypothetical protein; Provisional	96.75
PRK07074	257	short chain dehydrogenase; Provisional	96.75
PRK10538	248	malonic semialdehyde reductase; Provisional	96.74
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.74
PRK08862	227	short chain dehydrogenase; Provisional	96.74
PLN02253	280	xanthoxin dehydrogenase	96.73
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.71
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.71
PRK08589	272	short chain dehydrogenase; Validated	96.71
PRK12742	237	oxidoreductase; Provisional	96.7
PRK07832	272	short chain dehydrogenase; Provisional	96.7
PRK06198	260	short chain dehydrogenase; Provisional	96.69
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.67
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.67
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.64
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.64
KOG2304|consensus	298		96.64
PRK06184	502	hypothetical protein; Provisional	96.63
PRK07856	252	short chain dehydrogenase; Provisional	96.63
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.62
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.61
PRK10669	558	putative cation:proton antiport protein; Provision	96.61
PRK06484	520	short chain dehydrogenase; Validated	96.61
PRK06482	276	short chain dehydrogenase; Provisional	96.61
PRK06179	270	short chain dehydrogenase; Provisional	96.6
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.6
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.6
PRK07045	388	putative monooxygenase; Reviewed	96.59
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.59
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.59
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.58
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.58
PRK07236	386	hypothetical protein; Provisional	96.57
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.57
PRK07190	487	hypothetical protein; Provisional	96.56
PRK08263	275	short chain dehydrogenase; Provisional	96.56
PRK08244	493	hypothetical protein; Provisional	96.56
PRK14967	223	putative methyltransferase; Provisional	96.56
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.55
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.55
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.55
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.53
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.52
PLN02928	347	oxidoreductase family protein	96.51
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.51
KOG1502|consensus	327		96.51
KOG1207|consensus	245		96.51
PRK06475	400	salicylate hydroxylase; Provisional	96.51
PRK06523	260	short chain dehydrogenase; Provisional	96.49
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	96.49
PRK06398	258	aldose dehydrogenase; Validated	96.49
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.49
PRK12831	464	putative oxidoreductase; Provisional	96.48
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.47
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.47
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.47
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.46
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.46
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.46
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.46
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.45
PRK05868	372	hypothetical protein; Validated	96.45
PRK08328	231	hypothetical protein; Provisional	96.45
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.45
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.44
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.44
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.44
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.44
PRK08013	400	oxidoreductase; Provisional	96.43
PRK05884	223	short chain dehydrogenase; Provisional	96.43
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.43
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.43
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.42
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.42
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.41
PRK07538	413	hypothetical protein; Provisional	96.41
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.41
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
PRK07775	274	short chain dehydrogenase; Provisional	96.41
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.4
PLN02686	367	cinnamoyl-CoA reductase	96.39
PLN02583	297	cinnamoyl-CoA reductase	96.38
PRK13243	333	glyoxylate reductase; Reviewed	96.38
PRK09126	392	hypothetical protein; Provisional	96.37
PRK07806	248	short chain dehydrogenase; Provisional	96.37
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.37
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.36
PRK06126	545	hypothetical protein; Provisional	96.36
PRK06953	222	short chain dehydrogenase; Provisional	96.36
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.36
PRK12367	245	short chain dehydrogenase; Provisional	96.35
PRK06484	520	short chain dehydrogenase; Validated	96.35
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.35
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.35
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.34
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.34
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.33
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.33
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.32
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.32
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	96.32
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.31
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.3
PRK06834	488	hypothetical protein; Provisional	96.3
PRK06114	254	short chain dehydrogenase; Provisional	96.29
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.29
PRK07577	234	short chain dehydrogenase; Provisional	96.28
KOG0725|consensus	270		96.28
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.28
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.28
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.27
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.27
PRK06720	169	hypothetical protein; Provisional	96.27
PRK05650	270	short chain dehydrogenase; Provisional	96.26
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.25
PRK08303	305	short chain dehydrogenase; Provisional	96.25
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	96.24
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.24
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.24
PRK06940	275	short chain dehydrogenase; Provisional	96.23
PRK07340	304	ornithine cyclodeaminase; Validated	96.22
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.21
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.21
PRK06483	236	dihydromonapterin reductase; Provisional	96.2
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.2
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.2
PRK12480	330	D-lactate dehydrogenase; Provisional	96.2
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.19
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.17
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.17
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.17
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.16
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.16
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.16
PRK07574	385	formate dehydrogenase; Provisional	96.15
PRK06141	314	ornithine cyclodeaminase; Validated	96.14
PRK14982	340	acyl-ACP reductase; Provisional	96.14
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.14
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.13
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.13
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.13
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.12
PRK07588	391	hypothetical protein; Provisional	96.12
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.11
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.09
PRK07417	279	arogenate dehydrogenase; Reviewed	96.09
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.09
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.09
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.09
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.08
PRK06185	407	hypothetical protein; Provisional	96.08
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.08
PLN02650	351	dihydroflavonol-4-reductase	96.08
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.07
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.07
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.07
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.07
PTZ00188	506	adrenodoxin reductase; Provisional	96.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.06
PRK09135	249	pteridine reductase; Provisional	96.06
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.06
PRK12743	256	oxidoreductase; Provisional	96.06
PRK06924	251	short chain dehydrogenase; Provisional	96.05
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.05
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.05
PRK06932	314	glycerate dehydrogenase; Provisional	96.05
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.04
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	96.04
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.04
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.04
PRK08223	287	hypothetical protein; Validated	96.03
PRK13984	604	putative oxidoreductase; Provisional	96.03
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.03
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.03
PRK07791	286	short chain dehydrogenase; Provisional	96.02
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.02
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	96.02
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	96.01
PRK06436	303	glycerate dehydrogenase; Provisional	96.01
PRK09496	453	trkA potassium transporter peripheral membrane com	96.0
PRK09496	453	trkA potassium transporter peripheral membrane com	96.0
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.99
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.99
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.99
PRK07201	657	short chain dehydrogenase; Provisional	95.99
PRK05855	582	short chain dehydrogenase; Validated	95.99
PRK06487	317	glycerate dehydrogenase; Provisional	95.98
PRK10157	428	putative oxidoreductase FixC; Provisional	95.98
PRK12746	254	short chain dehydrogenase; Provisional	95.98
PRK08294	634	phenol 2-monooxygenase; Provisional	95.98
CHL00194	317	ycf39 Ycf39; Provisional	95.98
PRK08278	273	short chain dehydrogenase; Provisional	95.97
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.97
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.97
PRK08291	330	ectoine utilization protein EutC; Validated	95.96
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.96
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.96
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	95.96
PRK08317	241	hypothetical protein; Provisional	95.95
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	95.95
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	95.94
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.94
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.94
PLN03139	386	formate dehydrogenase; Provisional	95.94
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.94
KOG0029|consensus	501		95.93
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.92
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.91
PRK08219	227	short chain dehydrogenase; Provisional	95.91
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	95.9
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.89
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.89
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.88
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.88
PRK12747	252	short chain dehydrogenase; Provisional	95.88
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	95.87
KOG1399|consensus	448		95.87
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.87
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.86
PRK12937	245	short chain dehydrogenase; Provisional	95.86
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.86
PLN02852	491	ferredoxin-NADP+ reductase	95.85
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.85
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.85
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.85
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	95.85
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.85

>KOG0024|consensus

Probab=99.94  E-value=1.3e-26  Score=152.52  Aligned_cols=100  Identities=60%  Similarity=1.030  Sum_probs=96.4

Q ss_pred             CeeecCCCCCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q psy16556          1 MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG   80 (100)
Q Consensus         1 ~~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g   80 (100)
                      +.|++.++.+|++++|++.+++.++|+||++|+|++|+++|+++++||++++++++|++|||+|+||+|+.+...||.+|
T Consensus       114 m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G  193 (354)
T KOG0024|consen  114 MVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG  193 (354)
T ss_pred             cccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecChhhhhhhhcC
Q psy16556         81 ARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +.+|++++..+.|+++++++
T Consensus       194 A~~VVi~d~~~~Rle~Ak~~  213 (354)
T KOG0024|consen  194 ASDVVITDLVANRLELAKKF  213 (354)
T ss_pred             CCcEEEeecCHHHHHHHHHh
Confidence            99999999999999999874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.92  E-value=4.5e-25  Score=147.34  Aligned_cols=96  Identities=26%  Similarity=0.319  Sum_probs=89.9

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      +.|+. .+|+|+||+++|+++++++|+++++++||.+ ++..|+|++++..+++||++|+|+|.|++|++++|+|+.+|+
T Consensus       113 ~~gy~-~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga  191 (339)
T COG1064         113 ITGYT-TDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA  191 (339)
T ss_pred             cccee-ecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            34554 4899999999999999999999999999988 999999999999999999999999999999999999999998


Q ss_pred             cEEEEEecChhhhhhhhcC
Q psy16556         82 RVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~l  100 (100)
                      + |++++++++|++++++|
T Consensus       192 ~-Via~~~~~~K~e~a~~l  209 (339)
T COG1064         192 E-VIAITRSEEKLELAKKL  209 (339)
T ss_pred             e-EEEEeCChHHHHHHHHh
Confidence            8 99999999999999875

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.88  E-value=6.8e-22  Score=132.68  Aligned_cols=91  Identities=31%  Similarity=0.397  Sum_probs=83.1

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ ..+.|||+++ +..++++|++|||+|+ |++|++++|++|.+|++ ++
T Consensus        93 ~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v  171 (326)
T COG0604          93 RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT-VV  171 (326)
T ss_pred             CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc-EE
Confidence            3799999999999999999999999999999 9999999999 6688999999999997 99999999999999986 77


Q ss_pred             EEecChhhhhhhhcC
Q psy16556         86 VCKYVGIRIFPYKKI  100 (100)
Q Consensus        86 ~~~~~~~~~~~~~~l  100 (100)
                      ++.++++|.++++++
T Consensus       172 ~~~~s~~k~~~~~~l  186 (326)
T COG0604         172 AVVSSSEKLELLKEL  186 (326)
T ss_pred             EEecCHHHHHHHHhc
Confidence            777888888877654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.86  E-value=6.3e-21  Score=128.28  Aligned_cols=92  Identities=26%  Similarity=0.404  Sum_probs=84.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+|+|+||+++|++.++++|++++++++++..+++++|++++.....+|++|+|+|+|++|++++|+++.+|+++|++++
T Consensus       122 ~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~  201 (343)
T PRK09880        122 VDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCAD  201 (343)
T ss_pred             CCCceeeeEEechHHeEECCCCCCHHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence            36999999999999999999999998888778899999999777777899999999999999999999999997699999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       202 ~~~~~~~~a~~l  213 (343)
T PRK09880        202 VSPRSLSLAREM  213 (343)
T ss_pred             CCHHHHHHHHHc
Confidence            999999998764

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.84  E-value=4.1e-20  Score=121.44  Aligned_cols=92  Identities=25%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             CCCcccceEEecCC-ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAAD-FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~-~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+++|++ .++++|+++++++++.+ +...|+|++++.....+|++|+|+|+|++|++++|++|.+|+++|++
T Consensus        71 ~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~  150 (280)
T TIGR03366        71 LSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA  150 (280)
T ss_pred             ccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            36999999999997 69999999999999887 78899999997777779999999999999999999999999987888


Q ss_pred             EecChhhhhhhhcC
Q psy16556         87 CKYVGIRIFPYKKI  100 (100)
Q Consensus        87 ~~~~~~~~~~~~~l  100 (100)
                      ++++++|+++++++
T Consensus       151 ~~~~~~r~~~a~~~  164 (280)
T TIGR03366       151 ADPSPDRRELALSF  164 (280)
T ss_pred             ECCCHHHHHHHHHc
Confidence            88899999888753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.83  E-value=4.2e-20  Score=124.37  Aligned_cols=90  Identities=26%  Similarity=0.293  Sum_probs=80.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHh---cCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKR---SGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVIC   85 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~---~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~   85 (100)
                      +|+|+||+++|++.++++|+++++++|+++++.+++++++..   ..+++|++|+|+|+|++|++++|+++. +|..+|+
T Consensus       114 ~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi  193 (341)
T cd08237         114 DGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLV  193 (341)
T ss_pred             CCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEE
Confidence            699999999999999999999999999877999999999842   456889999999999999999999996 6655599


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      +++++++|++++++
T Consensus       194 ~~~~~~~k~~~a~~  207 (341)
T cd08237         194 VFGKHQEKLDLFSF  207 (341)
T ss_pred             EEeCcHhHHHHHhh
Confidence            99999999988764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.83  E-value=5.1e-20  Score=125.03  Aligned_cols=91  Identities=25%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       137 ~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~  216 (368)
T TIGR02818       137 CSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAI  216 (368)
T ss_pred             CccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            379999999999999999999999999988 7899999998 77899999999999999999999999999999659999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       217 ~~~~~~~~~a~~~  229 (368)
T TIGR02818       217 DINPAKFELAKKL  229 (368)
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999887653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.83  E-value=7.2e-20  Score=122.77  Aligned_cols=90  Identities=22%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||+.+|++.++++|+++++++++.+ ++..|+|+++...++++|++|+|+|+|++|++++|+++.+|++ |++++
T Consensus       118 ~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~-vi~~~  196 (329)
T TIGR02822       118 DGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT-VHVMT  196 (329)
T ss_pred             CCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe-EEEEe
Confidence            699999999999999999999999998877 8899999999778899999999999999999999999999998 99999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       197 ~~~~~~~~a~~~  208 (329)
T TIGR02822       197 RGAAARRLALAL  208 (329)
T ss_pred             CChHHHHHHHHh
Confidence            999999998764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.82  E-value=1.2e-19  Score=121.59  Aligned_cols=90  Identities=31%  Similarity=0.440  Sum_probs=84.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||+++|++.++++|+++++++++.+ +++.|+|+++...++++|++|+|+|+|++|++++|+++.+|+++|++++
T Consensus       116 ~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~  195 (339)
T cd08239         116 DGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVD  195 (339)
T ss_pred             CCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            699999999999999999999999999888 8999999999878899999999999999999999999999998788899


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      ++++|++++++
T Consensus       196 ~~~~~~~~~~~  206 (339)
T cd08239         196 PSPERLELAKA  206 (339)
T ss_pred             CCHHHHHHHHH
Confidence            99999988765

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.82  E-value=1.6e-19  Score=122.65  Aligned_cols=90  Identities=24%  Similarity=0.339  Sum_probs=83.2

Q ss_pred             CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      |+|+||+++|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|.|+|++|++++|+++..|+++|++++
T Consensus       144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~  223 (371)
T cd08281         144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD  223 (371)
T ss_pred             ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence            79999999999999999999999999988 7889999987 778899999999999999999999999999996599999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       224 ~~~~r~~~a~~~  235 (371)
T cd08281         224 LNEDKLALAREL  235 (371)
T ss_pred             CCHHHHHHHHHc
Confidence            999999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=99.81  E-value=1.6e-19  Score=123.08  Aligned_cols=91  Identities=22%  Similarity=0.280  Sum_probs=83.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++++.+ +++.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~  229 (381)
T PLN02740        150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV  229 (381)
T ss_pred             CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence            599999999999999999999999998887 7889999987 67899999999999999999999999999999659999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       230 ~~~~~r~~~a~~~  242 (381)
T PLN02740        230 DINPEKFEKGKEM  242 (381)
T ss_pred             cCChHHHHHHHHc
Confidence            9999999988753

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.81  E-value=2.5e-19  Score=121.32  Aligned_cols=91  Identities=38%  Similarity=0.560  Sum_probs=78.2

Q ss_pred             CCCcccceEEecCCceEE-CCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYK-LPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~-~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+.+|.+++++ +||+++++.+++.+++++++++. .....+++.+|+|+|+||+|++++++++..|+.+|++
T Consensus       119 ~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv  198 (350)
T COG1063         119 IDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIV  198 (350)
T ss_pred             CCCceEEEEEeccccCeecCCCCCChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            579999999999765555 58888777777779999998885 4555555559999999999999999999999998999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +|.+++|++++++
T Consensus       199 ~d~~~~Rl~~A~~  211 (350)
T COG1063         199 VDRSPERLELAKE  211 (350)
T ss_pred             eCCCHHHHHHHHH
Confidence            9999999999976

>KOG0023|consensus

Probab=99.80  E-value=8.2e-20  Score=120.55  Aligned_cols=88  Identities=27%  Similarity=0.352  Sum_probs=80.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||+++++.++.+||+++++++||.+ ++..|+|.++...++.||+++-|.|+|++|.+++|++|+||.+ |++++
T Consensus       134 ~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r-V~vis  212 (360)
T KOG0023|consen  134 QGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR-VTVIS  212 (360)
T ss_pred             cCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcE-EEEEe
Confidence            466999999999999999999999999977 9999999999999999999999999977999999999999999 99998


Q ss_pred             cCh-hhhhhhh
Q psy16556         89 YVG-IRIFPYK   98 (100)
Q Consensus        89 ~~~-~~~~~~~   98 (100)
                      +++ .|.+.++
T Consensus       213 ~~~~kkeea~~  223 (360)
T KOG0023|consen  213 TSSKKKEEAIK  223 (360)
T ss_pred             CCchhHHHHHH
Confidence            887 4444444

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.80  E-value=5.1e-19  Score=120.05  Aligned_cols=91  Identities=26%  Similarity=0.249  Sum_probs=83.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||+.++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       138 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~  217 (368)
T cd08300         138 TSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGI  217 (368)
T ss_pred             cccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            368999999999999999999999999888 7889999987 67889999999999999999999999999999659999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       218 ~~~~~~~~~~~~l  230 (368)
T cd08300         218 DINPDKFELAKKF  230 (368)
T ss_pred             eCCHHHHHHHHHc
Confidence            9999999887653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.80  E-value=1e-18  Score=118.52  Aligned_cols=91  Identities=21%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||+++|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       139 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~  218 (369)
T cd08301         139 TSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGV  218 (369)
T ss_pred             cccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            488999999999999999999999998888 7889999987 67889999999999999999999999999999559999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|.++++++
T Consensus       219 ~~~~~~~~~~~~~  231 (369)
T cd08301         219 DLNPSKFEQAKKF  231 (369)
T ss_pred             cCCHHHHHHHHHc
Confidence            9999999887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.79  E-value=7.7e-19  Score=118.74  Aligned_cols=91  Identities=23%  Similarity=0.244  Sum_probs=83.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+.+|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~  207 (358)
T TIGR03451       128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV  207 (358)
T ss_pred             cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            589999999999999999999999998888 7788899886 67889999999999999999999999999999769999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       208 ~~~~~~~~~~~~~  220 (358)
T TIGR03451       208 DIDDRKLEWAREF  220 (358)
T ss_pred             cCCHHHHHHHHHc
Confidence            9999999988653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.79  E-value=1.2e-18  Score=118.06  Aligned_cols=90  Identities=26%  Similarity=0.303  Sum_probs=83.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||+.++++.++++|+++++++++.+ .++.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~  215 (365)
T cd08277         136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV  215 (365)
T ss_pred             cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            489999999999999999999999999988 7899999987 77889999999999999999999999999999669999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|++++++
T Consensus       216 ~~~~~~~~~~~~  227 (365)
T cd08277         216 DINEDKFEKAKE  227 (365)
T ss_pred             eCCHHHHHHHHH
Confidence            999999988765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.79  E-value=1.9e-18  Score=116.22  Aligned_cols=90  Identities=28%  Similarity=0.488  Sum_probs=82.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||+.+|++.++++|+++++++++.++++++++++++..++++|++|+|+|+|++|++++|+++.+|++.|+++++
T Consensus       114 ~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~  193 (347)
T PRK10309        114 DGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (347)
T ss_pred             CCccceeEEeehHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            69999999999999999999999999988777777888887788899999999999999999999999999986788889


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      +++|++++++
T Consensus       194 ~~~~~~~~~~  203 (347)
T PRK10309        194 NSEKLALAKS  203 (347)
T ss_pred             CHHHHHHHHH
Confidence            9999988765

>PLN02827 Alcohol dehydrogenase-like

Probab=99.79  E-value=1.5e-18  Score=118.29  Aligned_cols=91  Identities=23%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+.+|++.++++|+++++++++.+ ++..++|+++ +..++++|++|+|+|+|++|++++|+++.+|++.|+++
T Consensus       145 ~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~  224 (378)
T PLN02827        145 VSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGV  224 (378)
T ss_pred             cccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            489999999999999999999999998877 7778888876 66889999999999999999999999999999768888


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|.++++++
T Consensus       225 ~~~~~~~~~a~~l  237 (378)
T PLN02827        225 DINPEKAEKAKTF  237 (378)
T ss_pred             CCCHHHHHHHHHc
Confidence            8899999887653

>KOG1198|consensus

Probab=99.78  E-value=1.4e-18  Score=117.42  Aligned_cols=91  Identities=29%  Similarity=0.366  Sum_probs=83.3

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-Hhc------CCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRS------GVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~------~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      ..|+|+||+++|+..++++|+++++++++.+ .+..|||.++ ...      +.++|++|||+|+ |++|++++|+|+..
T Consensus       102 ~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~  181 (347)
T KOG1198|consen  102 SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHA  181 (347)
T ss_pred             CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhc
Confidence            4799999999999999999999999999988 8999999999 667      7999999999998 89999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhcC
Q psy16556         80 GARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |+. .+++.+++++.++++++
T Consensus       182 ~~~-~v~t~~s~e~~~l~k~l  201 (347)
T KOG1198|consen  182 GAI-KVVTACSKEKLELVKKL  201 (347)
T ss_pred             CCc-EEEEEcccchHHHHHHc
Confidence            966 66666999999998875

>KOG0022|consensus

Probab=99.77  E-value=1.8e-18  Score=114.04  Aligned_cols=90  Identities=24%  Similarity=0.242  Sum_probs=86.4

Q ss_pred             CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      -+|+||.++++..+.++++..+++.++++ +..+|+|.+. +.+++++|+++.|+|.|.+|++++|-+|..|+.+||.+|
T Consensus       145 StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvD  224 (375)
T KOG0022|consen  145 STFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVD  224 (375)
T ss_pred             ccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEe
Confidence            37999999999999999999999999999 9999999987 899999999999999999999999999999999999999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      -+++|.++++++
T Consensus       225 iN~~Kf~~ak~f  236 (375)
T KOG0022|consen  225 INPDKFEKAKEF  236 (375)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999875

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.77  E-value=4.6e-18  Score=114.66  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=83.0

Q ss_pred             CCcccceEEecCCceEECCC------CCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556         10 HGNLSQFYKHAADFCYKLPD------HLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR   82 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~------~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~   82 (100)
                      +|+|+||+.+|++.++++|+      ++++++++.+ +++.++|+++...++++|++|+|+|+|++|++++|+++.+|++
T Consensus       113 ~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~  192 (349)
T TIGR03201       113 QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA  192 (349)
T ss_pred             CCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            69999999999999999999      8998888877 8999999999778899999999999999999999999999997


Q ss_pred             EEEEEecChhhhhhhhcC
Q psy16556         83 VICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~l  100 (100)
                       |++++++++|+++++++
T Consensus       193 -vi~~~~~~~~~~~~~~~  209 (349)
T TIGR03201       193 -VVAIDIDPEKLEMMKGF  209 (349)
T ss_pred             -EEEEcCCHHHHHHHHHh
Confidence             99999999999888653

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.76  E-value=9.5e-18  Score=112.53  Aligned_cols=88  Identities=17%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             CcccceEEecC-CceEECC-CCCChh-hhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEE
Q psy16556         11 GNLSQFYKHAA-DFCYKLP-DHLTLE-EGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVI   84 (100)
Q Consensus        11 G~~ae~~~~~~-~~~~~~p-~~~~~~-~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v   84 (100)
                      |+|+||+++|+ +.++++| ++++++ +++.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++.+|++ |
T Consensus       101 g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-V  179 (338)
T cd08295         101 TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY-V  179 (338)
T ss_pred             CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-E
Confidence            68999999999 7899995 678876 56666 8999999999 6788999999999998 99999999999999998 8


Q ss_pred             EEEecChhhhhhhhc
Q psy16556         85 CVCKYVGIRIFPYKK   99 (100)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (100)
                      +++++++++.+++++
T Consensus       180 i~~~~~~~~~~~~~~  194 (338)
T cd08295         180 VGSAGSDEKVDLLKN  194 (338)
T ss_pred             EEEeCCHHHHHHHHH
Confidence            998899999888764

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.76  E-value=1.6e-17  Score=111.89  Aligned_cols=90  Identities=47%  Similarity=0.609  Sum_probs=82.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||+.++.+.++++|+++++++++.+.+..++|+++...++++|++|+|+|+|++|++++|+++.+|+++|+++++
T Consensus       126 ~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~  205 (351)
T cd08233         126 GGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEP  205 (351)
T ss_pred             CCceeeEEEechHHeEECcCCCCHHHhhhccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            69999999999999999999999999887778889999998888999999999999999999999999999955999988


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       206 ~~~~~~~~~~  215 (351)
T cd08233         206 SEARRELAEE  215 (351)
T ss_pred             CHHHHHHHHH
Confidence            9998887654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.76  E-value=3.3e-18  Score=113.83  Aligned_cols=90  Identities=26%  Similarity=0.283  Sum_probs=86.6

Q ss_pred             CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      ++|+||.++++..+.|++++.+++.++++ +...|.+-+. +..++++|++|.|+|.|++|++++|-|+..|+++|+++|
T Consensus       138 stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD  217 (366)
T COG1062         138 STFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVD  217 (366)
T ss_pred             ccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEe
Confidence            48999999999999999999999999999 9999999987 999999999999999999999999999999999999999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      .+++|++++++|
T Consensus       218 ~~~~Kl~~A~~f  229 (366)
T COG1062         218 INPEKLELAKKF  229 (366)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999875

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.76  E-value=8.1e-18  Score=114.12  Aligned_cols=84  Identities=24%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++++.+ +...|+|+++. ...+++|++|+|.|+|++|++++|+++.+|++ |+++
T Consensus       135 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~  213 (360)
T PLN02586        135 YGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVI  213 (360)
T ss_pred             CCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE
Confidence            699999999999999999999999999878 88899999984 45678999999999999999999999999998 7777


Q ss_pred             ecChhhh
Q psy16556         88 KYVGIRI   94 (100)
Q Consensus        88 ~~~~~~~   94 (100)
                      +.+++++
T Consensus       214 ~~~~~~~  220 (360)
T PLN02586        214 SSSSNKE  220 (360)
T ss_pred             eCCcchh
Confidence            7666654

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.75  E-value=1.6e-17  Score=113.03  Aligned_cols=90  Identities=22%  Similarity=0.251  Sum_probs=82.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||++++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+|++|++++++++..|+++|+++
T Consensus       142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~  221 (373)
T cd08299         142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV  221 (373)
T ss_pred             CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            589999999999999999999999999988 7899999987 77889999999999889999999999999999559999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|++.+++
T Consensus       222 ~~~~~~~~~a~~  233 (373)
T cd08299         222 DINKDKFAKAKE  233 (373)
T ss_pred             cCCHHHHHHHHH
Confidence            999999888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.75  E-value=9.9e-18  Score=111.57  Aligned_cols=88  Identities=22%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||+++|++.++++|++++++. +.+++..|+|++++... .++++++|+|+|++|++++|+++.+|++.|++++.
T Consensus       100 ~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~~~~~a~~~~~~~~-~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       100 FGGASKRLVTPASRVCRLDPALGPQG-ALLALAATARHAVAGAE-VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCcccceEEcCHHHceeCCCCCCHHH-HhhhHHHHHHHHHHhcc-cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            59999999999999999999999864 55667899999996543 36889999999999999999999999997777888


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      +++|++.+++
T Consensus       178 ~~~rl~~a~~  187 (308)
T TIGR01202       178 NPRRRDGATG  187 (308)
T ss_pred             CHHHHHhhhh
Confidence            8888776643

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.75  E-value=1.6e-17  Score=113.33  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=76.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcC--CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSG--VGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~--~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||+++|++.++++|+++++++++.+ +...|+|+++....  .++|++|+|.|+|++|++++|+++.+|++ |++
T Consensus       129 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-Vi~  207 (375)
T PLN02178        129 QGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLR-VTV  207 (375)
T ss_pred             CCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCe-EEE
Confidence            699999999999999999999999999877 78889999985443  36899999999999999999999999998 888


Q ss_pred             EecChhh-hhhhhc
Q psy16556         87 CKYVGIR-IFPYKK   99 (100)
Q Consensus        87 ~~~~~~~-~~~~~~   99 (100)
                      ++.++++ .+++++
T Consensus       208 ~~~~~~~~~~~a~~  221 (375)
T PLN02178        208 ISRSSEKEREAIDR  221 (375)
T ss_pred             EeCChHHhHHHHHh
Confidence            8776554 555544

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.74  E-value=2.4e-17  Score=111.37  Aligned_cols=90  Identities=28%  Similarity=0.420  Sum_probs=75.2

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHh-------cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKR-------SGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~-------~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      .+|+|+||++++++.++++|++++ +++++..+++++++++..       .++++|++|+|+|+|++|++++|++|.+|+
T Consensus       119 ~~G~~aey~~~~~~~~~~~P~~~~-~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~  197 (355)
T cd08230         119 LHGFMREYFVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF  197 (355)
T ss_pred             CCccceeEEEeccccEEECCCCCC-cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            369999999999999999999999 666556787777666521       235789999999999999999999999999


Q ss_pred             cEEEEEec---ChhhhhhhhcC
Q psy16556         82 RVICVCKY---VGIRIFPYKKI  100 (100)
Q Consensus        82 ~~v~~~~~---~~~~~~~~~~l  100 (100)
                      + |+++++   +++|+++++++
T Consensus       198 ~-vi~~~~~~~~~~~~~~~~~~  218 (355)
T cd08230         198 E-VYVLNRRDPPDPKADIVEEL  218 (355)
T ss_pred             e-EEEEecCCCCHHHHHHHHHc
Confidence            7 998887   67888887654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.74  E-value=4.3e-17  Score=108.81  Aligned_cols=89  Identities=24%  Similarity=0.221  Sum_probs=79.4

Q ss_pred             CcccceEEecCCceEEC----CCCCChhhh-hcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         11 GNLSQFYKHAADFCYKL----PDHLTLEEG-ALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~----p~~~~~~~a-a~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      ++|+||++++.+.+.++    |++++++++ +.+ .++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~  165 (325)
T TIGR02825        86 PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK  165 (325)
T ss_pred             cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence            46999999999988877    999999887 455 8899999998 7889999999999997 99999999999999998


Q ss_pred             EEEEEecChhhhhhhhcC
Q psy16556         83 VICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~l  100 (100)
                       |++++++++|.++++++
T Consensus       166 -Vi~~~~s~~~~~~~~~l  182 (325)
T TIGR02825       166 -VVGAAGSDEKVAYLKKL  182 (325)
T ss_pred             -EEEEeCCHHHHHHHHHc
Confidence             99999999998887653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.73  E-value=3.9e-17  Score=111.58  Aligned_cols=90  Identities=26%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-h--cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-R--SGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~--~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      .+|+|+||+.++.+.++++|+++++++++.+ .++.+||+++. .  .+++++++|+|+|+ |++|++++++++.+|++ 
T Consensus       142 ~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~-  220 (393)
T cd08246         142 NYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGAN-  220 (393)
T ss_pred             CCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCe-
Confidence            3599999999999999999999999998877 89999999983 3  67899999999998 99999999999999999 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      +++++++++|.+++++
T Consensus       221 vv~~~~s~~~~~~~~~  236 (393)
T cd08246         221 PVAVVSSEEKAEYCRA  236 (393)
T ss_pred             EEEEeCCHHHHHHHHH
Confidence            7788899999888765

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.73  E-value=7.9e-17  Score=108.88  Aligned_cols=87  Identities=20%  Similarity=0.125  Sum_probs=75.8

Q ss_pred             CcccceEEecCCc--eEE--CCCCCChh-hhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         11 GNLSQFYKHAADF--CYK--LPDHLTLE-EGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        11 G~~ae~~~~~~~~--~~~--~p~~~~~~-~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      |+|+||.+++++.  +.+  +|++++++ +++.+ ++..|||+++ +..++++|++|+|+|+ |++|++++|++|.+|++
T Consensus       106 ~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~  185 (348)
T PLN03154        106 TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY  185 (348)
T ss_pred             CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence            6899999999853  544  49999986 56666 8999999998 6788999999999998 99999999999999998


Q ss_pred             EEEEEecChhhhhhhh
Q psy16556         83 VICVCKYVGIRIFPYK   98 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~   98 (100)
                       |++++++++|.++++
T Consensus       186 -Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        186 -VVGSAGSSQKVDLLK  200 (348)
T ss_pred             -EEEEcCCHHHHHHHH
Confidence             999989999988765

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.73  E-value=1e-16  Score=108.32  Aligned_cols=90  Identities=30%  Similarity=0.352  Sum_probs=79.9

Q ss_pred             CCcccceEEecCC-ceEECCCCCChhhhhcc-hhHHHHHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAAD-FCYKLPDHLTLEEGALL-EPLAVGVHACKR-SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~-~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|+||+.++++ .++++|+++++++++.+ +++.|||+++.. ...++|++|||+|+|++|++++|+++.+|+++|++
T Consensus       128 ~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~  207 (361)
T cd08231         128 SGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIV  207 (361)
T ss_pred             CcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            5999999999996 79999999999988888 999999999944 45569999999998999999999999999944999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+++++
T Consensus       208 ~~~~~~~~~~~~~  220 (361)
T cd08231         208 IDGSPERLELARE  220 (361)
T ss_pred             EcCCHHHHHHHHH
Confidence            9889988887754

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>KOG1197|consensus

Probab=99.72  E-value=3.7e-17  Score=105.55  Aligned_cols=90  Identities=23%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~   85 (100)
                      ..|.|+|+..+|...++++|+.+++++++.+ ....|||.-+ +..++++|++||++.+ |++|++++|+++..|+. +|
T Consensus        97 ~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~-tI  175 (336)
T KOG1197|consen   97 PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAH-TI  175 (336)
T ss_pred             cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcE-EE
Confidence            3799999999999999999999999998877 8999999988 7789999999999987 99999999999999999 88


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      ++.+..+|.+.+++
T Consensus       176 ~~asTaeK~~~ake  189 (336)
T KOG1197|consen  176 ATASTAEKHEIAKE  189 (336)
T ss_pred             EEeccHHHHHHHHh
Confidence            88899999998876

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.72  E-value=5.3e-17  Score=111.39  Aligned_cols=91  Identities=26%  Similarity=0.420  Sum_probs=77.5

Q ss_pred             CCcccceEEecCC--ceEECCCCCCh----hhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTL----EEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR   82 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~----~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~   82 (100)
                      +|+|+||+++|+.  .++++|++++.    ++++.+ +++.++|++++..++++|++|+|.|+|++|++++|+++.+|++
T Consensus       132 ~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~  211 (393)
T TIGR02819       132 VGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAA  211 (393)
T ss_pred             CCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence            6999999999964  69999998753    234444 8899999999888899999999988899999999999999999


Q ss_pred             EEEEEecChhhhhhhhcC
Q psy16556         83 VICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~l  100 (100)
                      .|++++++++|+++++++
T Consensus       212 ~vi~~d~~~~r~~~a~~~  229 (393)
T TIGR02819       212 VVIVGDLNPARLAQARSF  229 (393)
T ss_pred             eEEEeCCCHHHHHHHHHc
Confidence            666667888899888764

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.72  E-value=6.1e-17  Score=109.67  Aligned_cols=87  Identities=18%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|.+.++++|+++++++++.+ .++.|+|+++. ....++|++++|+|+|++|++++|++|.+|++ ++++
T Consensus       132 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~-vi~~  210 (357)
T PLN02514        132 QGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHH-VTVI  210 (357)
T ss_pred             CCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCe-EEEE
Confidence            699999999999999999999999998877 88899999984 45567999999998899999999999999998 8888


Q ss_pred             ecChhhhhhh
Q psy16556         88 KYVGIRIFPY   97 (100)
Q Consensus        88 ~~~~~~~~~~   97 (100)
                      ++++++++.+
T Consensus       211 ~~~~~~~~~~  220 (357)
T PLN02514        211 SSSDKKREEA  220 (357)
T ss_pred             eCCHHHHHHH
Confidence            7777776544

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.72  E-value=9.9e-17  Score=108.81  Aligned_cols=90  Identities=21%  Similarity=0.241  Sum_probs=81.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||+.++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+|++|++++++++.+|++.|+++
T Consensus       135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~  214 (365)
T cd05279         135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV  214 (365)
T ss_pred             cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            378999999999999999999999998888 7899999987 77889999999999889999999999999999867888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|.+.+++
T Consensus       215 ~~~~~~~~~~~~  226 (365)
T cd05279         215 DINKDKFEKAKQ  226 (365)
T ss_pred             eCCHHHHHHHHH
Confidence            888888887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.72  E-value=1.1e-16  Score=106.46  Aligned_cols=89  Identities=18%  Similarity=0.306  Sum_probs=80.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||++++.+.++++|++++.++++.+.+..+++..++..+++++++++|+|+|.+|++++|+++.+|++ |++++.
T Consensus       109 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~  187 (319)
T cd08242         109 DGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGR  187 (319)
T ss_pred             CCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcC
Confidence            6999999999999999999999998888656666777777888999999999998899999999999999999 899988


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       188 ~~~~~~~~~~  197 (319)
T cd08242         188 HSEKLALARR  197 (319)
T ss_pred             CHHHHHHHHH
Confidence            9999888764

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.71  E-value=1e-16  Score=107.05  Aligned_cols=89  Identities=17%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-C
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGL-----GTSVLVLSA-GPIGLVTILAAKAY-G   80 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~-----g~~vli~G~-G~~G~~~~~l~~~~-g   80 (100)
                      +|+|+||++++++.++++|+++++++++.+ .+..|||+++ +..++.+     |++|+|+|+ |++|++++|+++.+ |
T Consensus        95 ~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G  174 (336)
T TIGR02817        95 PGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTG  174 (336)
T ss_pred             CCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence            599999999999999999999999999887 8899999998 6777776     999999997 99999999999998 9


Q ss_pred             CcEEEEEecChhhhhhhhc
Q psy16556         81 ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++ |+++++++++.+++++
T Consensus       175 ~~-vi~~~~~~~~~~~l~~  192 (336)
T TIGR02817       175 LT-VIATASRPESQEWVLE  192 (336)
T ss_pred             CE-EEEEcCcHHHHHHHHH
Confidence            98 9999888888887754

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.71  E-value=1.1e-16  Score=107.86  Aligned_cols=90  Identities=27%  Similarity=0.438  Sum_probs=82.0

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||+.+|.+  .++++|+++++++++.+ .++.+++++++..++++|++|+|+|+|++|++++|+++.+|++.+++
T Consensus       117 ~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~  196 (351)
T cd08285         117 DGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIA  196 (351)
T ss_pred             CcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            6999999999974  89999999999999888 88999999988888999999999988999999999999999976888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++++++|.+++++
T Consensus       197 ~~~~~~~~~~~~~  209 (351)
T cd08285         197 VGSRPNRVELAKE  209 (351)
T ss_pred             EeCCHHHHHHHHH
Confidence            9888888887765

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.71  E-value=9.1e-17  Score=107.41  Aligned_cols=89  Identities=20%  Similarity=0.297  Sum_probs=82.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~   87 (100)
                      +|+|+||+.++.+.++++|+++++++++.+ .+..|+|++++..++++|++|+|+|+|++|++++++++. .|++ |+++
T Consensus       115 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~-v~~~  193 (338)
T PRK09422        115 DGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAK-VIAV  193 (338)
T ss_pred             cCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCe-EEEE
Confidence            599999999999999999999999998888 888999999988889999999999999999999999998 5998 9999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++++.+++
T Consensus       194 ~~~~~~~~~~~~  205 (338)
T PRK09422        194 DINDDKLALAKE  205 (338)
T ss_pred             eCChHHHHHHHH
Confidence            999999988754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.71  E-value=1.7e-16  Score=105.65  Aligned_cols=88  Identities=23%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             CcccceEEecCC---ceEECCCCCC------hhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556         11 GNLSQFYKHAAD---FCYKLPDHLT------LEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus        11 G~~ae~~~~~~~---~~~~~p~~~~------~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      ++|++|++++++   .++++|++++      ...+++..++.|||+++ +..++++|++|+|+|+ |++|++++|+++.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~  167 (329)
T cd08294          88 FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIK  167 (329)
T ss_pred             CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHc
Confidence            579999999999   9999999998      22233348999999998 7788999999999997 99999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhc
Q psy16556         80 GARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |++ |+++++++++.+++++
T Consensus       168 G~~-vi~~~~s~~~~~~l~~  186 (329)
T cd08294         168 GCK-VIGCAGSDDKVAWLKE  186 (329)
T ss_pred             CCE-EEEEeCCHHHHHHHHH
Confidence            998 9999999999888765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.71  E-value=1.4e-16  Score=106.75  Aligned_cols=90  Identities=34%  Similarity=0.538  Sum_probs=81.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||++++++.++++|++++++++++..++.++|+++...++++|++|+|+|+|++|.+++|+++.+|++.++++++
T Consensus       115 ~g~~~~~~~v~~~~~~~lP~~~s~~~a~~~~~~~~a~~~~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~  194 (341)
T cd08262         115 PGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDF  194 (341)
T ss_pred             CCceeeeEEechHHeEECCCCCCHHHhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            69999999999999999999999998885588889999888889999999999988999999999999999986777777


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       195 ~~~~~~~~~~  204 (341)
T cd08262         195 SPERRALALA  204 (341)
T ss_pred             CHHHHHHHHH
Confidence            8888877654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.71  E-value=1.5e-16  Score=106.60  Aligned_cols=89  Identities=22%  Similarity=0.245  Sum_probs=81.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||+.++.+.++++|+++++++++.+ .+..++|+++...++.++++|+|+|+|++|++++++++.+|++ |++++
T Consensus       116 ~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~-vi~~~  194 (333)
T cd08296         116 DGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFR-TVAIS  194 (333)
T ss_pred             CCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEe
Confidence            589999999999999999999999988877 8889999998666899999999999999999999999999998 99999


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      +++++++.+++
T Consensus       195 ~~~~~~~~~~~  205 (333)
T cd08296         195 RGSDKADLARK  205 (333)
T ss_pred             CChHHHHHHHH
Confidence            99999888765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.71  E-value=1.6e-16  Score=108.50  Aligned_cols=90  Identities=28%  Similarity=0.401  Sum_probs=82.9

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||++++++  .++++|+++++++++.+ ....++|++++..++.+|++|+|+|+|++|++++++++..|..+|++
T Consensus       135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~  214 (386)
T cd08283         135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIA  214 (386)
T ss_pred             CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            6999999999988  89999999999999987 88999999997788999999999988999999999999999866999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+++++
T Consensus       215 ~~~~~~~~~~~~~  227 (386)
T cd08283         215 IDRVPERLEMARS  227 (386)
T ss_pred             EcCCHHHHHHHHH
Confidence            9999999988765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK10083 putative oxidoreductase; Provisional

Probab=99.71  E-value=1.7e-16  Score=106.20  Aligned_cols=90  Identities=22%  Similarity=0.433  Sum_probs=81.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~   88 (100)
                      +|+|+||+.++.+.++++|+++++++++...++.+++++.+..++++|++|+|+|+|++|++++|+++. +|++.+++++
T Consensus       114 ~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~  193 (339)
T PRK10083        114 DGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVAD  193 (339)
T ss_pred             CCcceeeEEechHHeEECcCCCCHHHHhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence            599999999999999999999999888766788889877788899999999999999999999999996 6998788888


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      ++++|.+++++
T Consensus       194 ~~~~~~~~~~~  204 (339)
T PRK10083        194 RIDERLALAKE  204 (339)
T ss_pred             CCHHHHHHHHH
Confidence            89999888765

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.70  E-value=1.9e-16  Score=106.37  Aligned_cols=90  Identities=53%  Similarity=0.885  Sum_probs=81.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|+|+||++++++.++++|+++++++++.+.++.+++++++..++++|++++|.|+|++|++++|+++.+|++.|+++++
T Consensus       116 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~  195 (343)
T cd05285         116 DGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDI  195 (343)
T ss_pred             CCceeeeEEecHHHcEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            58999999999999999999999999887778889999888889999999999988999999999999999986888888


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       196 ~~~~~~~~~~  205 (343)
T cd05285         196 DPSRLEFAKE  205 (343)
T ss_pred             CHHHHHHHHH
Confidence            8888877654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.70  E-value=1.9e-16  Score=106.22  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=75.1

Q ss_pred             CcccceEEecCCceEECCCCCChhh-----hhcchhHHHHHHHH-HhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCC
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEE-----GALLEPLAVGVHAC-KRSGVGLG--TSVLVLSA-GPIGLVTILAAKAYGA   81 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~-----aa~~~~~~ta~~~~-~~~~~~~g--~~vli~G~-G~~G~~~~~l~~~~g~   81 (100)
                      ++|+||+++|++.++++|+++++++     ++...++.|||+++ +..++++|  ++|+|+|+ |++|++++|+++.+|+
T Consensus       101 ~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~  180 (345)
T cd08293         101 WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGC  180 (345)
T ss_pred             CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC
Confidence            5799999999999999999864432     23337899999998 66778876  99999998 9999999999999999


Q ss_pred             cEEEEEecChhhhhhhhc
Q psy16556         82 RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~   99 (100)
                      ++|++++++++|.+++++
T Consensus       181 ~~Vi~~~~s~~~~~~~~~  198 (345)
T cd08293         181 SRVVGICGSDEKCQLLKS  198 (345)
T ss_pred             CEEEEEcCCHHHHHHHHH
Confidence            449999999998887653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.70  E-value=2.1e-16  Score=107.22  Aligned_cols=90  Identities=24%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||+.++++.++++|+++++++++.+ .++.+|++++ +...++++++|+|+|+|++|++++|+++..|++.++++
T Consensus       138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~  217 (365)
T cd08278         138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV  217 (365)
T ss_pred             ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            489999999999999999999999988877 8899999987 67889999999999889999999999999999768999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|.+++++
T Consensus       218 ~~~~~k~~~~~~  229 (365)
T cd08278         218 DIVDSRLELAKE  229 (365)
T ss_pred             eCCHHHHHHHHH
Confidence            899988887654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.70  E-value=3.1e-16  Score=106.20  Aligned_cols=90  Identities=52%  Similarity=0.899  Sum_probs=80.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||+.++++.++++|++++++++++..++.++++++...++.+|++++|+|+|++|++++++++.+|++.++++++
T Consensus       135 ~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~  214 (364)
T PLN02702        135 HGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDV  214 (364)
T ss_pred             CCcccceEEcchHHeEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            69999999999999999999999999886567777888887788999999999988999999999999999987888888


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      +++|.+++++
T Consensus       215 ~~~~~~~~~~  224 (364)
T PLN02702        215 DDERLSVAKQ  224 (364)
T ss_pred             CHHHHHHHHH
Confidence            8888776654

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.70  E-value=3.1e-16  Score=104.08  Aligned_cols=89  Identities=21%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|+.++++.++++|+++++++++.+ ....++|+++...++.+|++|+|+|+ |.+|++++|+++.+|++ ++++
T Consensus        92 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~  170 (324)
T cd08292          92 HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGIN-VINL  170 (324)
T ss_pred             CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEE
Confidence            589999999999999999999999998877 67788999887788999999999998 99999999999999998 8888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      .+++++.+.+++
T Consensus       171 ~~~~~~~~~~~~  182 (324)
T cd08292         171 VRRDAGVAELRA  182 (324)
T ss_pred             ecCHHHHHHHHh
Confidence            777777766543

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.69  E-value=2.9e-16  Score=104.78  Aligned_cols=89  Identities=21%  Similarity=0.264  Sum_probs=74.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVL-SA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~-G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||+++|++.++++|+++++++++.+ ....|+|..++..+. ++++++|+ |+ |++|++++|+++.+|++ |++
T Consensus        96 ~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~-vi~  173 (324)
T cd08291          96 YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVHTAAASALGRMLVRLCKADGIK-VIN  173 (324)
T ss_pred             CCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCE-EEE
Confidence            499999999999999999999999998865 677788766555555 56667665 55 99999999999999998 999


Q ss_pred             EecChhhhhhhhcC
Q psy16556         87 CKYVGIRIFPYKKI  100 (100)
Q Consensus        87 ~~~~~~~~~~~~~l  100 (100)
                      ++++++|.++++++
T Consensus       174 ~~~~~~~~~~~~~~  187 (324)
T cd08291         174 IVRRKEQVDLLKKI  187 (324)
T ss_pred             EeCCHHHHHHHHHc
Confidence            99999999887653

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.69  E-value=3.8e-16  Score=106.27  Aligned_cols=90  Identities=28%  Similarity=0.373  Sum_probs=79.5

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhh---hhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEE---GALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARV   83 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~---aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~   83 (100)
                      +|+|+||+.+|.+  .++++|+++++++   ++.+ .+..++|++++..++.+|++|+|.|+|++|++++|+++..|+.+
T Consensus       124 ~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~  203 (375)
T cd08282         124 GGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR  203 (375)
T ss_pred             CCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            5899999999976  8999999999984   4555 78999999998788999999999988999999999999999855


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      |++++++++|.+++++
T Consensus       204 vi~~~~~~~~~~~~~~  219 (375)
T cd08282         204 VYVVDHVPERLDLAES  219 (375)
T ss_pred             EEEECCCHHHHHHHHH
Confidence            8889889988887764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.69  E-value=3.7e-16  Score=104.13  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||+.++.+.++++|+++++.+++.+ +++.++|++++..+++++++++|+|+|++|++++++++..|.+ |++++
T Consensus       120 ~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~-v~~~~  198 (329)
T cd08298         120 DGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAE-VFAFT  198 (329)
T ss_pred             CCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEc
Confidence            589999999999999999999999998877 8999999999888999999999999899999999999999997 99998


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      +++++++.+++
T Consensus       199 ~~~~~~~~~~~  209 (329)
T cd08298         199 RSGEHQELARE  209 (329)
T ss_pred             CChHHHHHHHH
Confidence            88888887754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.69  E-value=2.8e-16  Score=105.13  Aligned_cols=89  Identities=20%  Similarity=0.269  Sum_probs=79.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-h-cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-R-SGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVIC   85 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~   85 (100)
                      +|+|+||+.++++.++++|+++++++++.+ ..+.|||+++. . ..+.++++|+|+|+|++|++++++++.+| .+ |+
T Consensus       118 ~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~-v~  196 (340)
T cd05284         118 DGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPAT-VI  196 (340)
T ss_pred             CCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCc-EE
Confidence            689999999999999999999999999888 88999999984 3 46889999999999889999999999999 67 88


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      ++++++++.+.+++
T Consensus       197 ~~~~~~~~~~~~~~  210 (340)
T cd05284         197 AVDRSEEALKLAER  210 (340)
T ss_pred             EEeCCHHHHHHHHH
Confidence            88888888877654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.69  E-value=2.7e-16  Score=108.21  Aligned_cols=90  Identities=23%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             CCcccceEEecCC----ceEECCCCCChhhhhcchhHHHH---HHHH---------HhcCCCCCCEEEEEcC-CHHHHHH
Q psy16556         10 HGNLSQFYKHAAD----FCYKLPDHLTLEEGALLEPLAVG---VHAC---------KRSGVGLGTSVLVLSA-GPIGLVT   72 (100)
Q Consensus        10 ~G~~ae~~~~~~~----~~~~~p~~~~~~~aa~~~~~~ta---~~~~---------~~~~~~~g~~vli~G~-G~~G~~~   72 (100)
                      +|+|+||+++|++    .++++|+++++++++++++++++   ++++         +..++++|++|+|+|+ |++|+++
T Consensus       113 ~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~a  192 (410)
T cd08238         113 PGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMA  192 (410)
T ss_pred             CCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHH
Confidence            6999999999987    58999999999999877565443   3332         3467899999999986 9999999


Q ss_pred             HHHHHHcCC--cEEEEEecChhhhhhhhc
Q psy16556         73 ILAAKAYGA--RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        73 ~~l~~~~g~--~~v~~~~~~~~~~~~~~~   99 (100)
                      +|+++.+|.  .+|++++++++|++++++
T Consensus       193 iq~ak~~G~g~~~Vi~~~~~~~r~~~a~~  221 (410)
T cd08238         193 IDYAIHGPIGPSLLVVTDVNDERLARAQR  221 (410)
T ss_pred             HHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence            999999854  459999999999998865

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.68  E-value=3.7e-16  Score=103.15  Aligned_cols=89  Identities=21%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++++.++++|+++++++++.+ .++.++|+++ +..++++|++|+|+|+ |++|++++|+++.+|++ |+.
T Consensus        94 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~-v~~  172 (320)
T cd08243          94 DGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGAT-VTA  172 (320)
T ss_pred             CcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999988877 8999999998 5677999999999998 99999999999999999 898


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       173 ~~~~~~~~~~~~~  185 (320)
T cd08243         173 TTRSPERAALLKE  185 (320)
T ss_pred             EeCCHHHHHHHHh
Confidence            8888888887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.68  E-value=5.7e-16  Score=103.80  Aligned_cols=90  Identities=30%  Similarity=0.442  Sum_probs=80.0

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++++  .++++|+++++++++.+ .++.|||++++..++.+|++|+|+|+|.+|++++++++.+|+.+|++
T Consensus       118 ~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~  197 (344)
T cd08284         118 DGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFA  197 (344)
T ss_pred             CCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            5899999999975  99999999999998877 89999999997688899999999988999999999999999844888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++++++|.+++++
T Consensus       198 ~~~~~~~~~~~~~  210 (344)
T cd08284         198 VDPVPERLERAAA  210 (344)
T ss_pred             EcCCHHHHHHHHH
Confidence            8888888776554

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.67  E-value=8.1e-16  Score=102.27  Aligned_cols=89  Identities=22%  Similarity=0.303  Sum_probs=80.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||++++.+.++++|+++++++++.+ .++.++|+++ +..++++|++++|+|+ |++|++++++++.+|++ ++.
T Consensus        92 ~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~-v~~  170 (334)
T PTZ00354         92 GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAA-TII  170 (334)
T ss_pred             CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999888877 8899999998 5578999999999997 99999999999999998 677


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       171 ~~~~~~~~~~~~~  183 (334)
T PTZ00354        171 TTSSEEKVDFCKK  183 (334)
T ss_pred             EeCCHHHHHHHHH
Confidence            8888888887654

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.67  E-value=1.1e-15  Score=102.98  Aligned_cols=90  Identities=28%  Similarity=0.505  Sum_probs=80.2

Q ss_pred             CCcccceEEecCC-ceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAAD-FCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~-~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .|+|+||+.++++ .++++|+++++++++.+.++.++|++++..++.+|++|+|.|+|.+|++++++++.+|++.+++++
T Consensus       127 ~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~  206 (350)
T cd08256         127 NGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLD  206 (350)
T ss_pred             CCcceeeEEcccccceEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence            6999999999988 578999999999888778889999998778899999999977799999999999999998788888


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      ++++|.+++++
T Consensus       207 ~~~~~~~~~~~  217 (350)
T cd08256         207 LKDERLALARK  217 (350)
T ss_pred             CCHHHHHHHHH
Confidence            88888877654

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.67  E-value=1.1e-15  Score=98.63  Aligned_cols=89  Identities=40%  Similarity=0.532  Sum_probs=80.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ .++.++|+++ ....++++++++|+|+|++|++++++++..|.+ |+++
T Consensus        86 ~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~-v~~~  164 (271)
T cd05188          86 DGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGAR-VIVT  164 (271)
T ss_pred             CCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEE
Confidence            699999999999999999999999999988 9999999999 455568999999999966999999999999987 9999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       165 ~~~~~~~~~~~~  176 (271)
T cd05188         165 DRSDEKLELAKE  176 (271)
T ss_pred             cCCHHHHHHHHH
Confidence            999888877653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.67  E-value=1.2e-15  Score=100.60  Aligned_cols=89  Identities=24%  Similarity=0.297  Sum_probs=79.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ ..+.++|+++......+|++++|+|+ |++|++++++++..|++ |+.+
T Consensus        85 ~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~  163 (305)
T cd08270          85 MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAH-VVAV  163 (305)
T ss_pred             CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEE
Confidence            589999999999999999999999998888 88899999985444446999999998 99999999999999998 9999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       164 ~~~~~~~~~~~~  175 (305)
T cd08270         164 VGSPARAEGLRE  175 (305)
T ss_pred             eCCHHHHHHHHH
Confidence            899999888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.67  E-value=1e-15  Score=104.90  Aligned_cols=89  Identities=22%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH---hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK---RSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVI   84 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~---~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v   84 (100)
                      +|+|+||+.++++.++++|+++++++++.+ .+..++|+++.   ..++.+|++++|+|+ |++|++++++++.+|++ +
T Consensus       139 ~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~-v  217 (398)
T TIGR01751       139 FGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGN-P  217 (398)
T ss_pred             CccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCe-E
Confidence            699999999999999999999999998877 78999999984   467899999999998 99999999999999999 7


Q ss_pred             EEEecChhhhhhhhc
Q psy16556         85 CVCKYVGIRIFPYKK   99 (100)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (100)
                      +++++++++.+.+++
T Consensus       218 i~~~~~~~~~~~~~~  232 (398)
T TIGR01751       218 VAVVSSPEKAEYCRE  232 (398)
T ss_pred             EEEcCCHHHHHHHHH
Confidence            778788888887764

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.67  E-value=1.1e-15  Score=102.39  Aligned_cols=89  Identities=33%  Similarity=0.552  Sum_probs=80.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|++|+++|++.++++|+++++++++.+.+..++|+++....++++++|+|+|+|.+|.+++|+++.+|.+.|+++++
T Consensus       113 ~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~  192 (343)
T cd08236         113 DGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDI  192 (343)
T ss_pred             CCcccceEEechHHeEECcCCCCHHHHHhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            69999999999999999999999999887777889999987778899999999988999999999999999976888888


Q ss_pred             Chhhhhhhh
Q psy16556         90 VGIRIFPYK   98 (100)
Q Consensus        90 ~~~~~~~~~   98 (100)
                      ++++.++++
T Consensus       193 ~~~~~~~l~  201 (343)
T cd08236         193 DDEKLAVAR  201 (343)
T ss_pred             CHHHHHHHH
Confidence            888777654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.4e-15  Score=103.82  Aligned_cols=90  Identities=31%  Similarity=0.465  Sum_probs=77.9

Q ss_pred             CCcccceEEecCCceEECCCC-------CChhhhhcchhHHHHHHHH-Hh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q psy16556         10 HGNLSQFYKHAADFCYKLPDH-------LTLEEGALLEPLAVGVHAC-KR-SGVGLGTSVLVLSAGPIGLVTILAAKAYG   80 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~-------~~~~~aa~~~~~~ta~~~~-~~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g   80 (100)
                      +|+|++|+.++++.++++|++       ++.+.+++..++.++|+++ .. .++++|++|+|+|+|++|++++|+++.+|
T Consensus       148 ~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G  227 (384)
T cd08265         148 DGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAG  227 (384)
T ss_pred             CCcceeeEEechHHeEECCccccccccCCCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            699999999999999999986       4566565558899999998 44 68999999999988999999999999999


Q ss_pred             CcEEEEEecChhhhhhhhc
Q psy16556         81 ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++|++++++++|.+++++
T Consensus       228 ~~~vi~~~~~~~~~~~~~~  246 (384)
T cd08265         228 ASKVIAFEISEERRNLAKE  246 (384)
T ss_pred             CCEEEEEcCCHHHHHHHHH
Confidence            9659999888888877654

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.66  E-value=1.7e-15  Score=101.46  Aligned_cols=89  Identities=39%  Similarity=0.619  Sum_probs=79.7

Q ss_pred             CCcccceEEecCCc-----eEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEE
Q psy16556         10 HGNLSQFYKHAADF-----CYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI   84 (100)
Q Consensus        10 ~G~~ae~~~~~~~~-----~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v   84 (100)
                      +|+|++|+.++++.     ++++|+++++++++.+.+..++++++...++++|++|+|+|+|.+|++++|+++..|.+.|
T Consensus       114 ~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v  193 (343)
T cd08235         114 DGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKV  193 (343)
T ss_pred             CCcceeeEEecccccccccEEECCCCCCHHHHHhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEE
Confidence            59999999999998     9999999999998876788999999966689999999999889999999999999999867


Q ss_pred             EEEecChhhhhhhh
Q psy16556         85 CVCKYVGIRIFPYK   98 (100)
Q Consensus        85 ~~~~~~~~~~~~~~   98 (100)
                      +++++++++.+.++
T Consensus       194 ~~~~~s~~~~~~~~  207 (343)
T cd08235         194 IVSDLNEFRLEFAK  207 (343)
T ss_pred             EEECCCHHHHHHHH
Confidence            77878888877654

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.66  E-value=7.5e-16  Score=103.24  Aligned_cols=90  Identities=28%  Similarity=0.439  Sum_probs=80.0

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||++++++  .++++|+++++++++.+ .++.|||+++...+++++++|+|.|+|++|++++|+++.+|...+++
T Consensus       118 ~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~  197 (347)
T cd05278         118 DGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIA  197 (347)
T ss_pred             CCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            5899999999997  89999999999999888 88999999987788999999999888999999999999999744888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+++++
T Consensus       198 ~~~~~~~~~~~~~  210 (347)
T cd05278         198 VDSNPERLDLAKE  210 (347)
T ss_pred             EeCCHHHHHHHHH
Confidence            8888888776553

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.66  E-value=1.1e-15  Score=102.37  Aligned_cols=88  Identities=19%  Similarity=0.085  Sum_probs=76.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|+||+.++++.++++|+++++++++.+ .+..++|+++ ....+++|++|+|+|+ |++|++++|+++..|++ +++
T Consensus        98 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~  176 (341)
T cd08290          98 LGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIK-TIN  176 (341)
T ss_pred             CccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCe-EEE
Confidence            599999999999999999999999998887 8899999998 5578899999999998 99999999999999998 777


Q ss_pred             EecCh----hhhhhhh
Q psy16556         87 CKYVG----IRIFPYK   98 (100)
Q Consensus        87 ~~~~~----~~~~~~~   98 (100)
                      +.+++    ++.+.++
T Consensus       177 ~~~~~~~~~~~~~~~~  192 (341)
T cd08290         177 VVRDRPDLEELKERLK  192 (341)
T ss_pred             EEcCCCcchhHHHHHH
Confidence            66654    4455543

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.66  E-value=1.2e-15  Score=101.42  Aligned_cols=89  Identities=25%  Similarity=0.306  Sum_probs=77.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHh---cC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKR---SG-VGLGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~---~~-~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      +|+|+||+.++++.++++|+++++++++.+ ....|+++++..   .. ...+++|+|+|+ |++|++++|+++.+|++ 
T Consensus        95 ~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~-  173 (326)
T cd08289          95 HGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYE-  173 (326)
T ss_pred             CCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe-
Confidence            699999999999999999999999999887 778888888732   23 345789999998 99999999999999998 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      |+++++++++.+.+++
T Consensus       174 v~~~~~~~~~~~~~~~  189 (326)
T cd08289         174 VVASTGKADAADYLKK  189 (326)
T ss_pred             EEEEecCHHHHHHHHH
Confidence            9999999999887754

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.5e-15  Score=102.94  Aligned_cols=90  Identities=27%  Similarity=0.304  Sum_probs=80.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+.++.+.++++|+++++++++.+ .++.|||+++ +...+.++++|+|+|+|++|++++++++..|++.++++
T Consensus       139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~  218 (367)
T cd08263         139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV  218 (367)
T ss_pred             CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence            589999999999999999999999999888 8899999998 56677899999999889999999999999999878888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+++++
T Consensus       219 ~~s~~~~~~~~~  230 (367)
T cd08263         219 DVRDEKLAKAKE  230 (367)
T ss_pred             eCCHHHHHHHHH
Confidence            888888776643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.66  E-value=1.1e-15  Score=102.52  Aligned_cols=88  Identities=24%  Similarity=0.305  Sum_probs=78.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ .+..++|++++..++++|++++|+|+ |++|++++++++.+|++ ++.+
T Consensus       130 ~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-vi~~  208 (350)
T cd08274         130 DGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI-VIAV  208 (350)
T ss_pred             CccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE-EEEE
Confidence            599999999999999999999999888877 89999999987788999999999998 99999999999999999 7777


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++ +++.+++
T Consensus       209 ~~~~-~~~~~~~  219 (350)
T cd08274         209 AGAA-KEEAVRA  219 (350)
T ss_pred             eCch-hhHHHHh
Confidence            6654 6666553

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.66  E-value=1.6e-15  Score=99.06  Aligned_cols=89  Identities=27%  Similarity=0.269  Sum_probs=80.3

Q ss_pred             CcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +.|++|+.++.+.++++|+++++++++.+.+..++|+++...++++|++++|+|+|++|++++++++.+|.++|++++++
T Consensus        52 ~~~~~~~~v~~~~~~~ip~~l~~~~aa~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~  131 (277)
T cd08255          52 GPHAERVVVPANLLVPLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD  131 (277)
T ss_pred             CCcceEEEcCHHHeeECcCCCCHHHhHHHHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence            46899999999999999999999888877888999999887889999999999889999999999999998868888888


Q ss_pred             hhhhhhhhc
Q psy16556         91 GIRIFPYKK   99 (100)
Q Consensus        91 ~~~~~~~~~   99 (100)
                      +++.+++++
T Consensus       132 ~~~~~~~~~  140 (277)
T cd08255         132 AARRELAEA  140 (277)
T ss_pred             HHHHHHHHH
Confidence            888887654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.66  E-value=1.7e-15  Score=101.67  Aligned_cols=89  Identities=26%  Similarity=0.301  Sum_probs=80.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||+.++++.++++|+++++++++.+ +...++|+++....+++|++++|.|.|++|++++++++.+|++ |++++
T Consensus       122 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~-v~~~~  200 (337)
T cd05283         122 QGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE-VTAFS  200 (337)
T ss_pred             CCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEc
Confidence            689999999999999999999999998877 8889999998666789999999988899999999999999997 99998


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      +++++.+.+++
T Consensus       201 ~~~~~~~~~~~  211 (337)
T cd05283         201 RSPSKKEDALK  211 (337)
T ss_pred             CCHHHHHHHHH
Confidence            98888887654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.7e-15  Score=101.46  Aligned_cols=88  Identities=42%  Similarity=0.669  Sum_probs=79.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|+|++|+.++++ ++++|+++++++++.+.+..+++++++..++.+|++|||+|+|.+|.+++|+++.+|.+ |+++.+
T Consensus       114 ~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~~~~~~a~~~~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~-v~~~~~  191 (337)
T cd08261         114 DGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR-VIVVDI  191 (337)
T ss_pred             CCcceeEEEechh-eEECCCCCCHHHhhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEECC
Confidence            5899999999999 99999999999988777778888888778899999999998899999999999999999 888888


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       192 s~~~~~~~~~  201 (337)
T cd08261         192 DDERLEFARE  201 (337)
T ss_pred             CHHHHHHHHH
Confidence            8888877643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.65  E-value=1.6e-15  Score=102.80  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=81.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||+.++++.++++|+++++++++.+ .+..++|+++ +..++.++++++|+|+|++|++++++++.+|+++|+.+
T Consensus       134 ~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~  213 (363)
T cd08279         134 LGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAV  213 (363)
T ss_pred             CccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence            589999999999999999999999998888 7889999987 67889999999999879999999999999999768888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+++++
T Consensus       214 ~~~~~~~~~~~~  225 (363)
T cd08279         214 DPVPEKLELARR  225 (363)
T ss_pred             cCCHHHHHHHHH
Confidence            888888877643

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.65  E-value=1.7e-15  Score=101.35  Aligned_cols=90  Identities=37%  Similarity=0.552  Sum_probs=77.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||++++++.++++|+++++++++...++.++|+++......++++|+|.|+|.+|++++|+++.+|.+.++++++
T Consensus       119 ~g~~~~~v~v~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~  198 (339)
T cd08232         119 QGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDL  198 (339)
T ss_pred             CCceeeEEEechHHeEECcCCCCHHHhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            59999999999999999999999999877678889999984443338999999888999999999999999954899988


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       199 s~~~~~~~~~  208 (339)
T cd08232         199 ADAPLAVARA  208 (339)
T ss_pred             CHHHHHHHHH
Confidence            8887776543

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.65  E-value=2.3e-15  Score=100.26  Aligned_cols=89  Identities=25%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ .+..++++++ +..++.+|++++|+|+ |.+|++++++++.+|++ ++.
T Consensus        92 ~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~-v~~  170 (327)
T PRK10754         92 LGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIG  170 (327)
T ss_pred             CcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999988876 7888999988 6678999999999986 99999999999999999 888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+++++
T Consensus       171 ~~~~~~~~~~~~~  183 (327)
T PRK10754        171 TVGSAQKAQRAKK  183 (327)
T ss_pred             EeCCHHHHHHHHH
Confidence            8888888877654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.65  E-value=2.2e-15  Score=100.50  Aligned_cols=90  Identities=38%  Similarity=0.549  Sum_probs=80.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||+.++.+.++++|+++++.+++.+.+..+++++++..++.+|++++|+|+|.+|.+++++++..|++.|+++++
T Consensus       113 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~  192 (334)
T cd08234         113 NGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEP  192 (334)
T ss_pred             CCcceeEEEecHHHcEECcCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            68999999999999999999999998876677888999887788999999999988999999999999999986788888


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+.+++
T Consensus       193 ~~~~~~~~~~  202 (334)
T cd08234         193 NEEKLELAKK  202 (334)
T ss_pred             CHHHHHHHHH
Confidence            8888877643

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.65  E-value=2.4e-15  Score=100.94  Aligned_cols=89  Identities=22%  Similarity=0.305  Sum_probs=80.8

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~   85 (100)
                      +|+|++|+.+++.  .++++|+++++++++.+ .+..+||+++ +..++.++++++|+|+|++|++++++++..|.+ |+
T Consensus       115 ~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~-vi  193 (345)
T cd08260         115 PGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR-VI  193 (345)
T ss_pred             CCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EE
Confidence            6999999999985  89999999999988877 7899999998 678899999999999999999999999999998 89


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      ++++++++.+.+++
T Consensus       194 ~~~~~~~~~~~~~~  207 (345)
T cd08260         194 AVDIDDDKLELARE  207 (345)
T ss_pred             EEeCCHHHHHHHHH
Confidence            99899888887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.64  E-value=2.3e-15  Score=100.54  Aligned_cols=89  Identities=25%  Similarity=0.329  Sum_probs=80.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ .++.++|+++....++++++++|+|+ |.+|++++++++.+|++ ++++
T Consensus       115 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~-vi~~  193 (334)
T PRK13771        115 DGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAK-VIAV  193 (334)
T ss_pred             CceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCE-EEEE
Confidence            689999999999999999999999998887 78899999985558899999999998 99999999999999998 8888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       194 ~~~~~~~~~~~~  205 (334)
T PRK13771        194 TSSESKAKIVSK  205 (334)
T ss_pred             eCCHHHHHHHHH
Confidence            888888877654

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.64  E-value=3e-15  Score=99.28  Aligned_cols=89  Identities=21%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ ..+.++|..++..+++++++++|+|+ |++|++++++++..|++ |+++
T Consensus        95 ~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~-v~~~  173 (324)
T cd08244          95 GGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT-VVGA  173 (324)
T ss_pred             CceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEE
Confidence            589999999999999999999999998877 78888865557888999999999997 99999999999999998 8999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       174 ~~~~~~~~~~~~  185 (324)
T cd08244         174 AGGPAKTALVRA  185 (324)
T ss_pred             eCCHHHHHHHHH
Confidence            888888877653

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>KOG0025|consensus

Probab=99.64  E-value=2.5e-15  Score=98.50  Aligned_cols=92  Identities=18%  Similarity=0.097  Sum_probs=79.8

Q ss_pred             CCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556          6 TPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus         6 ~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      .....|+|++|.+++++.++++++.++++.||++ .+.+|||..+ +..++.+|++|+..|+ .++|++.+|+++++|.+
T Consensus       108 ~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik  187 (354)
T KOG0025|consen  108 LSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK  187 (354)
T ss_pred             cCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc
Confidence            3445799999999999999999999999999999 9999999999 7889999999999999 89999999999999999


Q ss_pred             EEEEEecChhhhhhhh
Q psy16556         83 VICVCKYVGIRIFPYK   98 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~   98 (100)
                      . +-+.++....+.++
T Consensus       188 t-invVRdR~~ieel~  202 (354)
T KOG0025|consen  188 T-INVVRDRPNIEELK  202 (354)
T ss_pred             e-EEEeecCccHHHHH
Confidence            4 44446655555443

>smart00829 PKS_ER Enoylreductase

Probab=99.64  E-value=3.7e-15  Score=96.63  Aligned_cols=89  Identities=22%  Similarity=0.295  Sum_probs=81.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||+.++.+.++++|+++++++++.+ .+..++++++ +...+.+|++|+|+|+ |.+|++++++++..|++ |++
T Consensus        56 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~  134 (288)
T smart00829       56 PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAE-VFA  134 (288)
T ss_pred             CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEE
Confidence            489999999999999999999999998888 7899999998 7788999999999996 99999999999999998 999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       135 ~~~~~~~~~~~~~  147 (288)
T smart00829      135 TAGSPEKRDFLRE  147 (288)
T ss_pred             EeCCHHHHHHHHH
Confidence            9888888877653

Enoylreductase in Polyketide synthases.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.64  E-value=3.4e-15  Score=99.02  Aligned_cols=89  Identities=20%  Similarity=0.274  Sum_probs=77.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hc--CCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RS--GVG-LGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~--~~~-~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      +|+|+||+.++++.++++|+++++++++.+ ..+.++++++. ..  .+. .+++|+|+|+ |++|++++++++.+|++ 
T Consensus        95 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~-  173 (325)
T cd05280          95 DGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT-  173 (325)
T ss_pred             CceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-
Confidence            689999999999999999999999999888 78889998873 32  335 4579999998 99999999999999999 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      |+++++++++++.+++
T Consensus       174 v~~~~~~~~~~~~~~~  189 (325)
T cd05280         174 VVALTGKEEQADYLKS  189 (325)
T ss_pred             EEEEeCCHHHHHHHHh
Confidence            9999999999887754

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.64  E-value=3.6e-15  Score=99.93  Aligned_cols=89  Identities=25%  Similarity=0.333  Sum_probs=80.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|+.++++.++++|+++++++++.+ ....|||+++...+++++++++|+|+ +.+|++++++++.+|.+ |+++
T Consensus       118 ~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~-v~~~  196 (341)
T cd08297         118 DGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR-VIAI  196 (341)
T ss_pred             CCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEE
Confidence            589999999999999999999999998877 88999999996668999999999998 67999999999999998 9999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       197 ~~~~~~~~~~~~  208 (341)
T cd08297         197 DVGDEKLELAKE  208 (341)
T ss_pred             eCCHHHHHHHHH
Confidence            999888887654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.64  E-value=3.6e-15  Score=99.04  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH---hcCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK---RSGVG-LGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~---~~~~~-~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      +|+|+||++++.+.++++|+++++++++.+ ..+.++++++.   ..... ++++++|+|+ |++|++++|+++.+|++ 
T Consensus        95 ~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~-  173 (324)
T cd08288          95 WGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYE-  173 (324)
T ss_pred             CCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCe-
Confidence            689999999999999999999999988877 77777776653   34555 6789999998 99999999999999998 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      |++++++++|.+.+++
T Consensus       174 vi~~~~~~~~~~~~~~  189 (324)
T cd08288         174 VVASTGRPEEADYLRS  189 (324)
T ss_pred             EEEEeCCHHHHHHHHh
Confidence            8888889998887754

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08251 polyketide_synthase polyketide synthase

Probab=99.63  E-value=3e-15  Score=98.01  Aligned_cols=89  Identities=24%  Similarity=0.336  Sum_probs=81.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|++++++.++++|+++++++++.+ .+..++|++++..++++|++++|+|+ |++|++++|+++.+|++ ++++
T Consensus        73 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~-v~~~  151 (303)
T cd08251          73 MGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAE-IYAT  151 (303)
T ss_pred             CcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEEE
Confidence            589999999999999999999999998887 88999999998889999999999987 99999999999999998 8888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       152 ~~~~~~~~~~~~  163 (303)
T cd08251         152 ASSDDKLEYLKQ  163 (303)
T ss_pred             cCCHHHHHHHHH
Confidence            888888777643

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.63  E-value=2.5e-15  Score=101.15  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=80.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ ..+.+||++++ .....++++|+|+|+|++|++++|+++..|+++|+++
T Consensus       127 ~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~  206 (350)
T cd08240         127 DGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVV  206 (350)
T ss_pred             cCcceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence            689999999999999999999999998877 88999999984 4556689999999889999999999999999668889


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|.+.+++
T Consensus       207 ~~~~~~~~~~~~  218 (350)
T cd08240         207 DIDEAKLEAAKA  218 (350)
T ss_pred             eCCHHHHHHHHH
Confidence            888888877654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.63  E-value=3.4e-15  Score=99.54  Aligned_cols=89  Identities=24%  Similarity=0.272  Sum_probs=81.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .|+|++|+.++++.++++|+++++++++.+ ....++|+++...++.++++++|+|+|.+|++++++++.+|.+ |++++
T Consensus       115 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~-v~~~~  193 (330)
T cd08245         115 QGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFE-TVAIT  193 (330)
T ss_pred             CCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            589999999999999999999999998877 8889999999668899999999998888999999999999998 99999


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      +++++.+.+++
T Consensus       194 ~~~~~~~~~~~  204 (330)
T cd08245         194 RSPDKRELARK  204 (330)
T ss_pred             CCHHHHHHHHH
Confidence            99988877643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.63  E-value=3.4e-15  Score=99.52  Aligned_cols=89  Identities=24%  Similarity=0.358  Sum_probs=81.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ .++.+||+++ +..+++++++++|.|+|++|++++++++..|.+ |+++
T Consensus       117 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~  195 (338)
T cd08254         117 DGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAV  195 (338)
T ss_pred             CCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEE
Confidence            589999999999999999999999998877 8999999998 567799999999988899999999999999998 9999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       196 ~~s~~~~~~~~~  207 (338)
T cd08254         196 DIKEEKLELAKE  207 (338)
T ss_pred             cCCHHHHHHHHH
Confidence            999988877653

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.63  E-value=5.4e-15  Score=99.27  Aligned_cols=90  Identities=27%  Similarity=0.434  Sum_probs=79.3

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~   85 (100)
                      +|+|+||+.++.+  .++++|+++++++++.+ ....++|+++ ...++.+|++++|.|+|++|.+++|+++.+|..+|+
T Consensus       116 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~  195 (345)
T cd08286         116 DGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKII  195 (345)
T ss_pred             CCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            4899999999987  89999999999998877 8889999876 677899999999998899999999999999944488


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      +++++++|.+++++
T Consensus       196 ~~~~~~~~~~~~~~  209 (345)
T cd08286         196 MVDLDDNRLEVAKK  209 (345)
T ss_pred             EEcCCHHHHHHHHH
Confidence            88888888776654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.63  E-value=5.3e-15  Score=98.30  Aligned_cols=89  Identities=24%  Similarity=0.298  Sum_probs=77.5

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH---HhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC---KRSGVGLGT-SVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~---~~~~~~~g~-~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      +|+|++|+.+|++.++++|+++++++++.+ ....++++++   ....+.+++ +|+|+|+ |++|++++++++.+|++ 
T Consensus        94 ~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~-  172 (323)
T TIGR02823        94 DGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYE-  172 (323)
T ss_pred             CccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCe-
Confidence            689999999999999999999999998877 7778887776   334588898 9999998 99999999999999998 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      ++++++++++.+.+++
T Consensus       173 vi~~~~~~~~~~~~~~  188 (323)
T TIGR02823       173 VVASTGKAEEEDYLKE  188 (323)
T ss_pred             EEEEeCCHHHHHHHHh
Confidence            8877788888777654

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.62  E-value=5.8e-15  Score=97.87  Aligned_cols=89  Identities=19%  Similarity=0.155  Sum_probs=80.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ ....++|+++ +...+.+|++|+|+|+ |.+|++++++++.+|++ +++
T Consensus        90 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~-v~~  168 (323)
T cd05282          90 EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFK-TIN  168 (323)
T ss_pred             CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEE
Confidence            489999999999999999999999888877 7888999988 6677899999999998 89999999999999999 888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +.+++++.+.+++
T Consensus       169 ~~~~~~~~~~~~~  181 (323)
T cd05282         169 VVRRDEQVEELKA  181 (323)
T ss_pred             EecChHHHHHHHh
Confidence            8888888877654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.61  E-value=8.7e-15  Score=97.26  Aligned_cols=88  Identities=35%  Similarity=0.466  Sum_probs=80.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|++++.+.++++|+++++++++.+ .++.++|+++...++.++++++|+|+ |++|++++++++..|.+ |+.+
T Consensus       115 ~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~-v~~~  193 (332)
T cd08259         115 DGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGAR-VIAV  193 (332)
T ss_pred             CCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEE
Confidence            589999999999999999999999998877 89999999995588999999999998 99999999999999999 8888


Q ss_pred             ecChhhhhhhh
Q psy16556         88 KYVGIRIFPYK   98 (100)
Q Consensus        88 ~~~~~~~~~~~   98 (100)
                      .+++++.+.++
T Consensus       194 ~~~~~~~~~~~  204 (332)
T cd08259         194 TRSPEKLKILK  204 (332)
T ss_pred             eCCHHHHHHHH
Confidence            88888777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.61  E-value=1.1e-14  Score=94.41  Aligned_cols=88  Identities=25%  Similarity=0.292  Sum_probs=79.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|+||+.++.+.++++|+++++++++.+ .+..++++++ +..++++|++++|+|+ |++|++++++++..|++ ++.
T Consensus        60 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~  138 (293)
T cd05195          60 PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAE-VFA  138 (293)
T ss_pred             cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCE-EEE
Confidence            489999999999999999999999998887 8999999998 6688999999999986 99999999999999998 888


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +++++++.+.++
T Consensus       139 ~~~~~~~~~~~~  150 (293)
T cd05195         139 TVGSEEKREFLR  150 (293)
T ss_pred             EeCCHHHHHHHH
Confidence            888877777654

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.61  E-value=8.8e-15  Score=97.63  Aligned_cols=90  Identities=20%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGL-----GTSVLVLSA-GPIGLVTILAAKAYG   80 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~-----g~~vli~G~-G~~G~~~~~l~~~~g   80 (100)
                      .+|+|++|+.++.+.++++|+++++++++.+ ....++|+++ +...+.+     |++++|+|+ |++|++++++++.+|
T Consensus        95 ~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G  174 (336)
T cd08252          95 RPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLT  174 (336)
T ss_pred             CCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcC
Confidence            3689999999999999999999999998877 7888999987 6677777     999999997 999999999999999


Q ss_pred             -CcEEEEEecChhhhhhhhc
Q psy16556         81 -ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        81 -~~~v~~~~~~~~~~~~~~~   99 (100)
                       .+ |+++++++++.+++++
T Consensus       175 ~~~-v~~~~~~~~~~~~~~~  193 (336)
T cd08252         175 GLT-VIATASRPESIAWVKE  193 (336)
T ss_pred             CcE-EEEEcCChhhHHHHHh
Confidence             77 8999888888887654

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.60  E-value=1.5e-14  Score=97.03  Aligned_cols=90  Identities=27%  Similarity=0.382  Sum_probs=75.3

Q ss_pred             CCcccceEEecCC--ceEECCCCCChhhhh-----cc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556         10 HGNLSQFYKHAAD--FCYKLPDHLTLEEGA-----LL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus        10 ~G~~ae~~~~~~~--~~~~~p~~~~~~~aa-----~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      +|+|+||+.+|.+  .++++|++++++.+.     .+ ..+.+++++++..++++|++++|.|+|++|++++|+++.+|+
T Consensus       114 ~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~  193 (345)
T cd08287         114 DGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGA  193 (345)
T ss_pred             CCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            5899999999975  899999999873221     12 568889999877889999999998889999999999999999


Q ss_pred             cEEEEEecChhhhhhhhc
Q psy16556         82 RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~   99 (100)
                      +.++++++++++.+++++
T Consensus       194 ~~v~~~~~~~~~~~~~~~  211 (345)
T cd08287         194 ERIIAMSRHEDRQALARE  211 (345)
T ss_pred             CEEEEECCCHHHHHHHHH
Confidence            868888888777776554

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.60  E-value=1.8e-14  Score=95.07  Aligned_cols=88  Identities=28%  Similarity=0.400  Sum_probs=75.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .|+|++|+.++++.++++|+++  ..++.. .++.++++++...+++++++++|+|+|.+|.+++|+++.+|++.|+++.
T Consensus        84 ~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~  161 (312)
T cd08269          84 GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAID  161 (312)
T ss_pred             CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEC
Confidence            4899999999999999999998  333444 7888999998888899999999998899999999999999998678888


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      +++++.+++++
T Consensus       162 ~~~~~~~~~~~  172 (312)
T cd08269         162 RRPARLALARE  172 (312)
T ss_pred             CCHHHHHHHHH
Confidence            88888776543

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.59  E-value=1.8e-14  Score=95.77  Aligned_cols=89  Identities=27%  Similarity=0.302  Sum_probs=80.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|+.++.+.++++|+++++.+++.+ .+..++|+++ +...+++|++++|+|.|++|++++++++..|++ |+++
T Consensus       112 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~-v~~~  190 (336)
T cd08276         112 DGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGAR-VIAT  190 (336)
T ss_pred             CceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEE
Confidence            688999999999999999999999888877 8899999998 567899999999998899999999999999999 8999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       191 ~~~~~~~~~~~~  202 (336)
T cd08276         191 SSSDEKLERAKA  202 (336)
T ss_pred             eCCHHHHHHHHH
Confidence            888888877653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.59  E-value=1.7e-14  Score=94.89  Aligned_cols=88  Identities=24%  Similarity=0.320  Sum_probs=79.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +...+.++++++|+|+ |++|++++++++..|++ |++
T Consensus        91 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~-v~~  169 (323)
T cd05276          91 GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGAR-VIA  169 (323)
T ss_pred             CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCE-EEE
Confidence            489999999999999999999999888877 8999999998 5678999999999998 89999999999999999 888


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +++++++.+.++
T Consensus       170 ~~~~~~~~~~~~  181 (323)
T cd05276         170 TAGSEEKLEACR  181 (323)
T ss_pred             EcCCHHHHHHHH
Confidence            888888777654

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>KOG1202|consensus

Probab=99.59  E-value=1.1e-15  Score=113.95  Aligned_cols=96  Identities=21%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      |++|.-+ .-+.++-+.++.+.++.+|+++++++|++. +.++|+|+++ .++.+++|+++||+++ |++|+++|.+|.+
T Consensus      1497 RvM~mvp-AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa 1575 (2376)
T KOG1202|consen 1497 RVMGMVP-AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALA 1575 (2376)
T ss_pred             EEEEeee-hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHH
Confidence            5666654 356788899999999999999999999999 8999999999 8899999999999976 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhhc
Q psy16556         79 YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .|++ |+.+..+.||++++++
T Consensus      1576 ~G~~-VFTTVGSaEKRefL~~ 1595 (2376)
T KOG1202|consen 1576 HGCT-VFTTVGSAEKREFLLK 1595 (2376)
T ss_pred             cCCE-EEEecCcHHHHHHHHH
Confidence            9999 9999999999999865

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.58  E-value=2.6e-14  Score=95.90  Aligned_cols=89  Identities=27%  Similarity=0.424  Sum_probs=75.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|+|+||+.++++.++++|+++++++++.+.++.+++++... ...+|++|+|.|+|++|++++|+++..|+++|+++++
T Consensus       118 ~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~  196 (341)
T PRK05396        118 PGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALS-FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDV  196 (341)
T ss_pred             CCcceeeEEechHHeEECcCCCCHHHhHhhhHHHHHHHHHHc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            699999999999999999999999988866777777776532 3468999999888999999999999999965888888


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       197 ~~~~~~~~~~  206 (341)
T PRK05396        197 NEYRLELARK  206 (341)
T ss_pred             CHHHHHHHHH
Confidence            8888877654

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.58  E-value=2.4e-14  Score=95.18  Aligned_cols=88  Identities=39%  Similarity=0.593  Sum_probs=75.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|+|+||++++++.++++|+++++++++...+..++|+++ ...+++++++|+|.|.|.+|.+++|+++.+|++ |+.+.
T Consensus       117 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~-v~~~~  195 (306)
T cd08258         117 DGGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT-VVVVG  195 (306)
T ss_pred             CCceEEEEEcchHHeEECcCCCCHHHHHhhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEC
Confidence            5899999999999999999999999888558888999998 778899999999988799999999999999999 76663


Q ss_pred             --cChhhhhhhh
Q psy16556         89 --YVGIRIFPYK   98 (100)
Q Consensus        89 --~~~~~~~~~~   98 (100)
                        +++++.+.++
T Consensus       196 ~~~~~~~~~~~~  207 (306)
T cd08258         196 TEKDEVRLDVAK  207 (306)
T ss_pred             CCCCHHHHHHHH
Confidence              3444555443

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.58  E-value=1.8e-14  Score=96.75  Aligned_cols=88  Identities=25%  Similarity=0.379  Sum_probs=76.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCC----------CCCCEEEEEcC-CHHHHHHHHHH
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGV----------GLGTSVLVLSA-GPIGLVTILAA   76 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~----------~~g~~vli~G~-G~~G~~~~~l~   76 (100)
                      +|+|++|++++.+.++++|+++++++++.+ .++.++|+++ +..++          .++++++|+|+ |++|+++++++
T Consensus        96 ~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a  175 (339)
T cd08249          96 NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLA  175 (339)
T ss_pred             CCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHH
Confidence            589999999999999999999999998888 7999999998 44433          78999999998 89999999999


Q ss_pred             HHcCCcEEEEEecChhhhhhhhc
Q psy16556         77 KAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        77 ~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +.+|++ |+.+. +++|.+.+++
T Consensus       176 ~~~G~~-v~~~~-~~~~~~~~~~  196 (339)
T cd08249         176 KLAGYK-VITTA-SPKNFDLVKS  196 (339)
T ss_pred             HHcCCe-EEEEE-CcccHHHHHh
Confidence            999998 77776 5678777654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.57  E-value=2.7e-14  Score=95.83  Aligned_cols=89  Identities=36%  Similarity=0.439  Sum_probs=76.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|+|++|++++++.++++|+++++++++...++.++++++ .....+|++++|.|+|++|.+++|+++.+|.+.|+++++
T Consensus       116 ~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~a~~~~-~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~  194 (340)
T TIGR00692       116 DGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTV-LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDP  194 (340)
T ss_pred             CCcceeEEEeehHHcEECcCCCChHhhhhcchHHHHHHHH-HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            5899999999999999999999987776668888998886 445678999999888999999999999999976788877


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      ++++.+++++
T Consensus       195 ~~~~~~~~~~  204 (340)
T TIGR00692       195 NEYRLELAKK  204 (340)
T ss_pred             CHHHHHHHHH
Confidence            8888776554

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.57  E-value=2.7e-14  Score=93.75  Aligned_cols=89  Identities=26%  Similarity=0.195  Sum_probs=80.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|++|+.++.+.++++|++++.++++.+ ....++++++ +..++.+|++|+|+|+ |++|++++++++.+|++ |++
T Consensus        88 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~-v~~  166 (320)
T cd05286          88 PGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGAT-VIG  166 (320)
T ss_pred             CCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999988876 8888999988 6688999999999997 99999999999999998 888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       167 ~~~~~~~~~~~~~  179 (320)
T cd05286         167 TVSSEEKAELARA  179 (320)
T ss_pred             EcCCHHHHHHHHH
Confidence            8888888877654

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05281 TDH Threonine dehydrogenase

Probab=99.57  E-value=3.5e-14  Score=95.36  Aligned_cols=89  Identities=30%  Similarity=0.408  Sum_probs=76.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|+|++|++++++.++++|++++++.+++..++.++++++. ...++|++|+|.|+|.+|++++|+++.+|.++|+++++
T Consensus       118 ~g~~~~~v~v~~~~~~~lP~~~~~~~a~~~~~~~~a~~~~~-~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~  196 (341)
T cd05281         118 DGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL-AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDP  196 (341)
T ss_pred             CCcceEEEEechHHcEECcCCCCHHHhhhhhHHHHHHHHHH-hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            58999999999999999999999877766688888888775 34578999999888999999999999999955888878


Q ss_pred             Chhhhhhhhc
Q psy16556         90 VGIRIFPYKK   99 (100)
Q Consensus        90 ~~~~~~~~~~   99 (100)
                      +++|.+++++
T Consensus       197 ~~~~~~~~~~  206 (341)
T cd05281         197 NPYRLELAKK  206 (341)
T ss_pred             CHHHHHHHHH
Confidence            8888776553

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.57  E-value=4.1e-14  Score=94.27  Aligned_cols=88  Identities=20%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|++|+.++.+.++++|++. .+.+.+..++.++|+++ +..++.+|++++|+|+ |.+|++++++++..|.+ |+++
T Consensus        93 ~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~-v~~~  170 (329)
T cd08250          93 FGAFAEYQVVPARHAVPVPELK-PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCH-VIGT  170 (329)
T ss_pred             CcceeEEEEechHHeEECCCCc-chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCe-EEEE
Confidence            4899999999999999999973 33333448999999998 5678999999999997 99999999999999998 8888


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      ++++++.+.+++
T Consensus       171 ~~~~~~~~~~~~  182 (329)
T cd08250         171 CSSDEKAEFLKS  182 (329)
T ss_pred             eCcHHHHHHHHH
Confidence            888888776643

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.57  E-value=4e-14  Score=94.24  Aligned_cols=88  Identities=17%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++.+|++++|+|+ |++|++++++++..|++ |+.
T Consensus        91 ~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-v~~  169 (331)
T cd08273          91 VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE-VYG  169 (331)
T ss_pred             CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEE
Confidence            489999999999999999999999988877 8999999998 5578999999999998 99999999999999998 888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++. +++.+++++
T Consensus       170 ~~~-~~~~~~~~~  181 (331)
T cd08273         170 TAS-ERNHAALRE  181 (331)
T ss_pred             EeC-HHHHHHHHH
Confidence            876 777776543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.55  E-value=6.5e-14  Score=92.24  Aligned_cols=89  Identities=27%  Similarity=0.380  Sum_probs=80.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|++++|+.++.+.++++|+++++++++.+ .+..++++++ ...++.+|++++|+|+ |++|++++++++..|.+ |++
T Consensus        96 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~-v~~  174 (325)
T cd08253          96 QGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGAR-VIA  174 (325)
T ss_pred             CcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEE
Confidence            689999999999999999999999998877 8999999998 5588999999999997 99999999999999998 899


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       175 ~~~~~~~~~~~~~  187 (325)
T cd08253         175 TASSAEGAELVRQ  187 (325)
T ss_pred             EeCCHHHHHHHHH
Confidence            9888888777643

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.55  E-value=8.6e-14  Score=91.78  Aligned_cols=88  Identities=26%  Similarity=0.356  Sum_probs=79.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++.+.++++|+++++.+++.+ .+..++|+++ +...+.++++++|+|+ |++|++++++++..|++ |++
T Consensus        91 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~  169 (325)
T TIGR02824        91 GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGAR-VFT  169 (325)
T ss_pred             CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCE-EEE
Confidence            489999999999999999999998888777 8999999987 7788999999999997 99999999999999998 888


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +.+++++.+.++
T Consensus       170 ~~~~~~~~~~~~  181 (325)
T TIGR02824       170 TAGSDEKCAACE  181 (325)
T ss_pred             EeCCHHHHHHHH
Confidence            888888776654

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.55  E-value=5.3e-14  Score=94.41  Aligned_cols=87  Identities=26%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVG----LGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~----~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      .|+|++|+.++++.++++|+++++++++.+ .+..++|+++ +...+.    +|++++|+|+ |++|++++++++.+|++
T Consensus       110 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~  189 (350)
T cd08248         110 QGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAH  189 (350)
T ss_pred             CccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCe
Confidence            589999999999999999999999998877 8999999998 556665    4999999997 99999999999999998


Q ss_pred             EEEEEecChhhhhhhh
Q psy16556         83 VICVCKYVGIRIFPYK   98 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~   98 (100)
                       |+++.++ ++.+.++
T Consensus       190 -v~~~~~~-~~~~~~~  203 (350)
T cd08248         190 -VTTTCST-DAIPLVK  203 (350)
T ss_pred             -EEEEeCc-chHHHHH
Confidence             7777654 4555544

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.55  E-value=8.3e-14  Score=91.92  Aligned_cols=88  Identities=24%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++.+|++++|+|+ |++|++++++++.+|++ |+.
T Consensus        95 ~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~-v~~  173 (319)
T cd08267          95 GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH-VTG  173 (319)
T ss_pred             CceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999888877 8899999998 4556999999999998 99999999999999998 888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++++ ++.+.+++
T Consensus       174 ~~~~-~~~~~~~~  185 (319)
T cd08267         174 VCST-RNAELVRS  185 (319)
T ss_pred             EeCH-HHHHHHHH
Confidence            7754 66666543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.54  E-value=6.6e-14  Score=93.21  Aligned_cols=79  Identities=28%  Similarity=0.455  Sum_probs=72.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|++|+.++++.++++|+++++++++.+ .++.++|+++...++++|++++|+|+ |++|++++++++.+|.+ |+++
T Consensus       115 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~-v~~~  193 (325)
T cd08264         115 NGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE-VIAV  193 (325)
T ss_pred             CCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe-EEEE
Confidence            589999999999999999999999998887 78899999996688999999999998 99999999999999998 7777


Q ss_pred             ec
Q psy16556         88 KY   89 (100)
Q Consensus        88 ~~   89 (100)
                      ++
T Consensus       194 ~~  195 (325)
T cd08264         194 SR  195 (325)
T ss_pred             eH
Confidence            53

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.54  E-value=9.4e-14  Score=92.44  Aligned_cols=88  Identities=19%  Similarity=0.046  Sum_probs=75.8

Q ss_pred             CcccceEEecC-CceEECCCCCC--hhh-hh-cchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         11 GNLSQFYKHAA-DFCYKLPDHLT--LEE-GA-LLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        11 G~~ae~~~~~~-~~~~~~p~~~~--~~~-aa-~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      ++|+||+.++. +.++++|++++  +++ ++ +..+..++|+++ +...+.++++|+|+|+ |++|++++|+++..|++ 
T Consensus        94 ~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~-  172 (329)
T cd05288          94 LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGAR-  172 (329)
T ss_pred             cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCE-
Confidence            47999999999 99999999985  433 34 338899999998 6678899999999997 99999999999999998 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      |+++++++++.+++++
T Consensus       173 vi~~~~~~~~~~~~~~  188 (329)
T cd05288         173 VVGIAGSDEKCRWLVE  188 (329)
T ss_pred             EEEEeCCHHHHHHHHh
Confidence            8999888888887654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.53  E-value=5.8e-14  Score=92.55  Aligned_cols=88  Identities=18%  Similarity=0.077  Sum_probs=77.9

Q ss_pred             CcccceEEecCCceEECCCCC---ChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556         11 GNLSQFYKHAADFCYKLPDHL---TLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~---~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .+|+||...+.+.+.|++++.   ++....+.++..|||.++ +...+++|++|+|.++ |++|..+.|+||..|++ |+
T Consensus       101 ~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~r-VV  179 (340)
T COG2130         101 SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCR-VV  179 (340)
T ss_pred             ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCe-EE
Confidence            479999999999999998653   333344448999999999 8899999999999998 99999999999999999 99


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      .+..++||.+++++
T Consensus       180 GiaGg~eK~~~l~~  193 (340)
T COG2130         180 GIAGGAEKCDFLTE  193 (340)
T ss_pred             EecCCHHHHHHHHH
Confidence            99999999999876

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.53  E-value=1.9e-13  Score=90.19  Aligned_cols=88  Identities=27%  Similarity=0.309  Sum_probs=79.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|++++|+.++.+.++++|+++++++++.+ .+..++|+++ ....+.++++++|+|+ |.+|++++++++..|++ ++.
T Consensus        96 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~-v~~  174 (328)
T cd08268          96 YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGAT-VIA  174 (328)
T ss_pred             CccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999888777 8999999998 5688899999999998 99999999999999998 888


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +++++++.+.++
T Consensus       175 ~~~~~~~~~~~~  186 (328)
T cd08268         175 TTRTSEKRDALL  186 (328)
T ss_pred             EcCCHHHHHHHH
Confidence            888888777654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.52  E-value=2e-13  Score=90.68  Aligned_cols=88  Identities=25%  Similarity=0.319  Sum_probs=79.5

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ .+..++++++ +..++.++++++|+|+ +.+|++++++++..|.+ ++.
T Consensus       118 ~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~-v~~  196 (342)
T cd08266         118 DGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGAT-VIA  196 (342)
T ss_pred             CcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEE
Confidence            588999999999999999999999998877 7889999987 6788999999999998 79999999999999999 888


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +++++++.+.++
T Consensus       197 ~~~~~~~~~~~~  208 (342)
T cd08266         197 TAGSEDKLERAK  208 (342)
T ss_pred             EeCCHHHHHHHH
Confidence            888888877654

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.52  E-value=1.5e-13  Score=90.70  Aligned_cols=87  Identities=25%  Similarity=0.305  Sum_probs=78.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++.+|++++|+|+ |++|++++++++.+|.+ |+.
T Consensus        96 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~  174 (326)
T cd08272          96 QGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGAR-VYA  174 (326)
T ss_pred             CCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEE
Confidence            588999999999999999999999888877 7889999987 7789999999999997 99999999999999998 888


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      ++++ ++.++++
T Consensus       175 ~~~~-~~~~~~~  185 (326)
T cd08272         175 TASS-EKAAFAR  185 (326)
T ss_pred             Eech-HHHHHHH
Confidence            8777 7776654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.50  E-value=3e-13  Score=89.04  Aligned_cols=89  Identities=31%  Similarity=0.447  Sum_probs=79.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .|++++|+.++.+.++++|+++++.+++.+ .+..++++++ +...+.++++++|+|+ |++|++++++++..|++ |+.
T Consensus        91 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~  169 (323)
T cd08241          91 QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGAR-VIA  169 (323)
T ss_pred             CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCE-EEE
Confidence            488999999999999999999998888766 8899999998 5788999999999998 99999999999999999 888


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++.++++.+.+++
T Consensus       170 ~~~~~~~~~~~~~  182 (323)
T cd08241         170 AASSEEKLALARA  182 (323)
T ss_pred             EeCCHHHHHHHHH
Confidence            8888888776643

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.49  E-value=5.1e-13  Score=90.01  Aligned_cols=88  Identities=23%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             CCcccceEEecCC----ceEECCCCCChhhhhcc-hhHHHHHHHH-Hhc-CCCCCCEEEEEcC-CHHHHHHHHHHHHcC-
Q psy16556         10 HGNLSQFYKHAAD----FCYKLPDHLTLEEGALL-EPLAVGVHAC-KRS-GVGLGTSVLVLSA-GPIGLVTILAAKAYG-   80 (100)
Q Consensus        10 ~G~~ae~~~~~~~----~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~-~~~~g~~vli~G~-G~~G~~~~~l~~~~g-   80 (100)
                      .|+|+||++++++    .++++|+++++++++.+ ....++|+++ +.. ++++|++++|+|+ |.+|++++++++..| 
T Consensus        98 ~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~  177 (352)
T cd08247          98 QGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYN  177 (352)
T ss_pred             CceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCC
Confidence            5899999999987    78999999999999887 8889999998 445 7999999999998 799999999999974 


Q ss_pred             CcEEEEEecChhhhhhhh
Q psy16556         81 ARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~   98 (100)
                      .+.++.+. ++++.+.++
T Consensus       178 ~~~v~~~~-~~~~~~~~~  194 (352)
T cd08247         178 IGTVVGTC-SSRSAELNK  194 (352)
T ss_pred             cceEEEEe-ChhHHHHHH
Confidence            43477765 445444443

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.47  E-value=8.9e-13  Score=87.23  Aligned_cols=87  Identities=24%  Similarity=0.299  Sum_probs=76.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++.+.++++|+++++.+++.+ .+..++++++ +..++.+|++++|+|+ |.+|++++++++..|++ |+.
T Consensus        93 ~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~-v~~  171 (325)
T cd08271          93 GGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR-VIT  171 (325)
T ss_pred             CccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999988877 8999999998 6688999999999998 79999999999999998 777


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +. ++++.+.++
T Consensus       172 ~~-~~~~~~~~~  182 (325)
T cd08271         172 TC-SKRNFEYVK  182 (325)
T ss_pred             EE-cHHHHHHHH
Confidence            65 566666543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.45  E-value=7.4e-13  Score=86.77  Aligned_cols=87  Identities=26%  Similarity=0.295  Sum_probs=75.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ ....++++++ +...+.++++++|+|+ |++|++++++++..|.+ |+.
T Consensus        96 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~  174 (309)
T cd05289          96 GGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGAR-VIA  174 (309)
T ss_pred             CCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEE
Confidence            589999999999999999999999888877 7888999998 4556899999999998 99999999999999998 777


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      ++.++ +.++++
T Consensus       175 ~~~~~-~~~~~~  185 (309)
T cd05289         175 TASAA-NADFLR  185 (309)
T ss_pred             Eecch-hHHHHH
Confidence            77666 665543

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.36  E-value=1.4e-11  Score=81.91  Aligned_cols=70  Identities=30%  Similarity=0.377  Sum_probs=65.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      +|+|++|+.++.+.++++|+++++++++.+ .+..++|+++ +..++++|++|+|+|+ |++|++++++++..
T Consensus        90 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~  162 (337)
T cd08275          90 FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV  162 (337)
T ss_pred             CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence            489999999999999999999999888877 7999999998 6788999999999998 99999999999999

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1196|consensus

Probab=99.29  E-value=2.4e-11  Score=80.22  Aligned_cols=87  Identities=16%  Similarity=0.115  Sum_probs=72.0

Q ss_pred             cccceEEecCCc--eEECCC--CCChhhhh--cchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         12 NLSQFYKHAADF--CYKLPD--HLTLEEGA--LLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        12 ~~ae~~~~~~~~--~~~~p~--~~~~~~aa--~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      +|.||.+++.+.  .+++|.  +.++....  +-.+..|||..+ +...+++|++++|.|+ |.+|+++-|+|+.+|+. 
T Consensus       102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~-  180 (343)
T KOG1196|consen  102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCY-  180 (343)
T ss_pred             cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCE-
Confidence            699999997653  455544  44444433  338999999999 8889999999999998 99999999999999997 


Q ss_pred             EEEEecChhhhhhhhc
Q psy16556         84 ICVCKYVGIRIFPYKK   99 (100)
Q Consensus        84 v~~~~~~~~~~~~~~~   99 (100)
                      |+....++||.++++.
T Consensus       181 VVGsaGS~EKv~ll~~  196 (343)
T KOG1196|consen  181 VVGSAGSKEKVDLLKT  196 (343)
T ss_pred             EEEecCChhhhhhhHh
Confidence            9999999999988764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.68  E-value=6.2e-08  Score=68.79  Aligned_cols=46  Identities=26%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ..++++|+|+|+|++|+++++.++.+|++ |+++|.+++|++.++++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~~~~rle~aesl  207 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDTRPEVAEQVESM  207 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHc
Confidence            45799999999999999999999999996 99999999999998764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.55  E-value=4.5e-08  Score=65.77  Aligned_cols=76  Identities=21%  Similarity=0.174  Sum_probs=62.0

Q ss_pred             ceEECCCCCChhhhhcchhHHHHHHHHHhcCC----CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh-hhh
Q psy16556         23 FCYKLPDHLTLEEGALLEPLAVGVHACKRSGV----GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI-FPY   97 (100)
Q Consensus        23 ~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~----~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~-~~~   97 (100)
                      ..+++|+.+..+.++...+.++++++++....    .++++|+|+|+|.+|..+++.++..|..+|++++++++|. +++
T Consensus       140 ~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la  219 (311)
T cd05213         140 KAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA  219 (311)
T ss_pred             HHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            45678888988888888888888888854432    4799999999999999999999998877799999998875 444


Q ss_pred             h
Q psy16556         98 K   98 (100)
Q Consensus        98 ~   98 (100)
                      +
T Consensus       220 ~  220 (311)
T cd05213         220 K  220 (311)
T ss_pred             H
Confidence            3

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.45  E-value=1.1e-06  Score=61.22  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=45.3

Q ss_pred             HHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         45 GVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        45 a~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+.++ +..+ ..+|++|+|+|.|++|+.+++.++.+|++ |++++.++.|.+.+++
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~-ViV~d~d~~R~~~A~~  243 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR-VIVTEVDPICALQAAM  243 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECChhhHHHHHh
Confidence            44555 4434 46899999999999999999999999997 9999999999887764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.31  E-value=7.9e-07  Score=62.06  Aligned_cols=70  Identities=23%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             ECCCCCChhhhhcchhHHHHHHHHHhcC----CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         26 KLPDHLTLEEGALLEPLAVGVHACKRSG----VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        26 ~~p~~~~~~~aa~~~~~~ta~~~~~~~~----~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++|+.+..+.+....+.++++++++...    ..++++|+|+|+|.+|..+++.++..|+++|+++++++++.+
T Consensus       147 ~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~  220 (423)
T PRK00045        147 SVAKRVRTETGIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE  220 (423)
T ss_pred             HHHhhHhhhcCCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence            3444444444433467788888885432    357899999999999999999999999876999999988854

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.19  E-value=1.5e-05  Score=55.75  Aligned_cols=53  Identities=25%  Similarity=0.256  Sum_probs=43.2

Q ss_pred             HHHHHHHHhc-CCC-CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         43 AVGVHACKRS-GVG-LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        43 ~ta~~~~~~~-~~~-~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -..|+++... ++. .|++|+|+|.|.+|+.+++.++.+|++ |++++.++.|...
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~dp~ra~~  250 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEVDPICALQ  250 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCchhhHH
Confidence            3356666433 544 899999999999999999999999997 9999988877544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.19  E-value=9.8e-06  Score=48.31  Aligned_cols=44  Identities=27%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -.+++++|+|+|++|..++..+...|+++|+++.|+.+|.+.+.
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~   53 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALA   53 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHH
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence            36899999999999999999999999999999999998876553

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.17  E-value=5.5e-06  Score=59.07  Aligned_cols=44  Identities=27%  Similarity=0.219  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++++++|+|+|.+|++++++++.+|++ |++++.++++++.++++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~l  206 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPEVKEQVQSM  206 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHc
Confidence            579999999999999999999999998 99999999999888753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.01  E-value=3.3e-05  Score=53.80  Aligned_cols=52  Identities=23%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             HHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         45 GVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        45 a~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+.++ +..+ ...|++|+|+|.|++|+.+++.++.+|++ |++++.++.+...+
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~r~~~A  234 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPIRALEA  234 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChhhHHHH
Confidence            44444 3334 46899999999999999999999999998 99998888775443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.00  E-value=1.7e-05  Score=57.20  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..++|++|+|+|+|+.|+++++.++..|++ |++++..
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~  169 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG  169 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            367899999999999999999999999998 8888753

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.97  E-value=1.4e-05  Score=55.90  Aligned_cols=74  Identities=14%  Similarity=0.127  Sum_probs=52.3

Q ss_pred             CCcccceEEecCCceEE---C-CCCCChhhhhcchhHHHHHHHH----HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556         10 HGNLSQFYKHAADFCYK---L-PDHLTLEEGALLEPLAVGVHAC----KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~---~-p~~~~~~~aa~~~~~~ta~~~~----~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      ++.|++++.++. .+..   + +..++           .++.++    +..+..++++++|+|+|.+|..+++.++..|+
T Consensus       137 ~~lf~~a~~~~k-~vr~~t~i~~~~vS-----------v~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~  204 (417)
T TIGR01035       137 ERLFQKAFSVGK-RVRTETDISAGAVS-----------ISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGV  204 (417)
T ss_pred             HHHHHHHHHHhh-hhhhhcCCCCCCcC-----------HHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCC
Confidence            567888887776 3322   3 22222           233332    33445678999999999999999999999997


Q ss_pred             cEEEEEecChhhhh
Q psy16556         82 RVICVCKYVGIRIF   95 (100)
Q Consensus        82 ~~v~~~~~~~~~~~   95 (100)
                      .+|++++++.++.+
T Consensus       205 ~~V~v~~rs~~ra~  218 (417)
T TIGR01035       205 GKILIANRTYERAE  218 (417)
T ss_pred             CEEEEEeCCHHHHH
Confidence            66999999888754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.85  E-value=0.00013  Score=48.91  Aligned_cols=42  Identities=29%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+++++|+|.|.+|+.+++.++.+|++ |++.++++++.+.++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~~~~~~~~~  192 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARKSAHLARIT  192 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            589999999999999999999999996 999999988766544

>PLN02494 adenosylhomocysteinase

Probab=97.82  E-value=0.0001  Score=52.16  Aligned_cols=50  Identities=24%  Similarity=0.246  Sum_probs=40.8

Q ss_pred             HHHH-HhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         46 VHAC-KRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        46 ~~~~-~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +.++ +..++ -.|++++|+|.|.+|+.+++.++.+|++ |++++.++.+...
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~-VIV~e~dp~r~~e  292 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR-VIVTEIDPICALQ  292 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhhHH
Confidence            4555 44343 5799999999999999999999999997 9999888876433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.82  E-value=0.00024  Score=46.37  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=53.9

Q ss_pred             cccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         12 NLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        12 ~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|.+|-. +...++.+++++++..+..- ........+. ..+.++++|+-+|+|. |.+++.+++ .|..+|+++|.++
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~-tt~~~l~~l~-~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~  152 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHP-TTRLCLEALE-KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDP  152 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCH-HHHHHHHHHH-hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCH
Confidence            4555533 55667778877776654411 1111222232 1256899999999987 877776554 6776699999999


Q ss_pred             hhhhhhhc
Q psy16556         92 IRIFPYKK   99 (100)
Q Consensus        92 ~~~~~~~~   99 (100)
                      ...+.+++
T Consensus       153 ~~l~~A~~  160 (250)
T PRK00517        153 QAVEAARE  160 (250)
T ss_pred             HHHHHHHH
Confidence            98887654

>PRK08324 short chain dehydrogenase; Validated

Probab=97.79  E-value=6.2e-05  Score=55.48  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=54.7

Q ss_pred             cccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         12 NLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        12 ~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++++|..+|+..++.+ +.++.+++.+...        ...+.-+|++++|.|+ |++|..+++.+...|++ |++++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~--------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~-Vvl~~r~  455 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM--------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGAC-VVLADLD  455 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC--------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEeCC
Confidence            4567887887777776 5566666542200        0122346899999997 99999999999999997 9999998


Q ss_pred             hhhhhhh
Q psy16556         91 GIRIFPY   97 (100)
Q Consensus        91 ~~~~~~~   97 (100)
                      +++.+.+
T Consensus       456 ~~~~~~~  462 (681)
T PRK08324        456 EEAAEAA  462 (681)
T ss_pred             HHHHHHH
Confidence            8776543

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.72  E-value=0.00011  Score=50.73  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++.+|+|+|+|.+|+.+++.++.+|++ |+++++++++.+.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~~~~~~~~l  206 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDINIDRLRQL  206 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHH
Confidence            346699999999999999999999997 99999988876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.71  E-value=0.00028  Score=46.88  Aligned_cols=50  Identities=10%  Similarity=-0.103  Sum_probs=40.6

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++......+++++|+|+|+.+.+++..++..|+++|+++.++++|.+.+
T Consensus       113 ~L~~~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        113 LLASYQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             HHHhcCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            44333445567999999999999999999999998899999998877654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.65  E-value=0.00021  Score=44.07  Aligned_cols=41  Identities=27%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ..+|+|+|+|.+|+.++++++.+|++ ++..+.++++.+..+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~~~~~~~   60 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPERLRQLE   60 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHHHHHhhh
Confidence            47899999999999999999999999 999999888776554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.62  E-value=0.00016  Score=48.25  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=42.8

Q ss_pred             hhHHHHHHHH----HhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         40 EPLAVGVHAC----KRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        40 ~~~~ta~~~~----~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ...++|.+++    +.... -.|++++|+|.|.+|..++..++.+|++ |++.++++++.+.+
T Consensus       129 n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~-V~v~~R~~~~~~~~  190 (287)
T TIGR02853       129 NSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGAR-VFVGARSSADLARI  190 (287)
T ss_pred             ccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4455565554    22222 2579999999999999999999999997 99999888765443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.61  E-value=0.00041  Score=46.29  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..+++++|+|+|++|.+++..+...|+++|++++++++|.+.+
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            3568999999999999999999999998799999998877654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.60  E-value=0.00024  Score=45.10  Aligned_cols=42  Identities=19%  Similarity=0.121  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.|++++|+|.|.+|..+++.+...|++ |++.++++++.+.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~-Vvv~D~~~~~~~~~   67 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAK-LIVADINEEAVARA   67 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            3678999999999999999999999998 88999888876654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.58  E-value=0.00091  Score=47.57  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             eEECCCCCChhhhhcc-hhHHHHHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         24 CYKLPDHLTLEEGALL-EPLAVGVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        24 ~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +..+|+..+...+=.. ......+.++ +..+ .-.|++++|+|.|.+|..+++.++.+|++ |+++++++.+.
T Consensus       218 V~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~-ViV~e~dp~~a  290 (476)
T PTZ00075        218 AINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGAR-VVVTEIDPICA  290 (476)
T ss_pred             EEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhH
Confidence            4556776544333212 2222333444 4433 45799999999999999999999999998 99998877665

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.54  E-value=0.00034  Score=46.58  Aligned_cols=42  Identities=21%  Similarity=0.189  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|+|+|+.+.+++..+...|+++|+++.++++|.+.+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L  165 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL  165 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            578999999999999999999999998899999998877654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.50  E-value=0.00038  Score=44.41  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   45 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQ-VCINSRNENKLKRM   45 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4689999998 89999999999999998 99998888766543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.50  E-value=0.00035  Score=49.80  Aligned_cols=43  Identities=33%  Similarity=0.393  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +.++++|+|+|.|..|++++++++..|++ |++.|.++++.+.+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~-v~~~D~~~~~~~~l   51 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGAR-PTVCDDDPDALRPH   51 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            55789999999999999999999999998 88898776655433

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.50  E-value=0.00044  Score=45.88  Aligned_cols=43  Identities=23%  Similarity=0.216  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.+++++.+.+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l  163 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEEL  163 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            4578999999999999999999999976699999998876544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.48  E-value=0.00042  Score=43.08  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .|++|.|+|.|.+|+.+++.++.+|.+ |++.+++....+
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~~~   73 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMR-VIGYDRSPKPEE   73 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-E-EEEEESSCHHHH
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCce-eEEecccCChhh
Confidence            589999999999999999999999998 999998877544

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0005  Score=45.92  Aligned_cols=44  Identities=27%  Similarity=0.249  Sum_probs=39.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .++++++|+|+|+.+.+++.-++..|+++|+++.|+.+|.+.+.
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La  167 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA  167 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35899999999999999999999999887999999998876654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.44  E-value=0.0009  Score=44.68  Aligned_cols=43  Identities=21%  Similarity=0.161  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..+++++|+|+|+.+.+++..+...|+++++++.++++|.+.+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            3578999999999999998888889998899999988876654

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.43  E-value=0.00042  Score=45.61  Aligned_cols=49  Identities=20%  Similarity=0.227  Sum_probs=41.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~   99 (100)
                      ....+++|++||.+|+|+ |..++++++..|.+ +|+++|.+++.++.+++
T Consensus        71 ~~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         71 ALAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             hhccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            346788999999999988 88888888887763 59999999998888764

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.00071  Score=44.45  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~~~~~~~l   44 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWR-VFATCRKEEDVAAL   44 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            4678999998 99999999988889998 99999988776544

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.37  E-value=0.00079  Score=44.56  Aligned_cols=44  Identities=14%  Similarity=0.065  Sum_probs=39.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ...+++++|.|+ +++|...+......|.+ ++.+.|+++|++.+.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~~~kL~~la   47 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYN-LILVARREDKLEALA   47 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHH
Confidence            356789999999 99999999999999999 999999999987664

>PRK08017 oxidoreductase; Provisional

Probab=97.36  E-value=0.00065  Score=43.77  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=34.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++++|.|+ |++|..+++.+...|.+ |+++++++++.+.++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~-v~~~~r~~~~~~~~~   43 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYR-VLAACRKPDDVARMN   43 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHhHHHH
Confidence            57999998 99999999999999998 888889888776543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.36  E-value=0.0012  Score=44.23  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|+|+|+.+.+++..+...|+++|+++.++++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            5789999999999998777777789988999988854

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.00075  Score=43.53  Aligned_cols=41  Identities=20%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -.+++++|.|+ |.+|..++..+...|++ |+++++++++.+.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~~~~~~~   48 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKE   48 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            35799999998 99999999999889998 9999888877643

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.33  E-value=0.0023  Score=38.48  Aligned_cols=49  Identities=24%  Similarity=0.261  Sum_probs=37.5

Q ss_pred             HHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         48 ACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        48 ~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++.... ..+++++|+|+|.+|...++.+...|..+|+++++++++.+.
T Consensus         9 a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~   58 (155)
T cd01065           9 ALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKA   58 (155)
T ss_pred             HHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH
Confidence            4444343 457899999999999999988888875458999888877654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.00093  Score=43.23  Aligned_cols=40  Identities=23%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +|++++|.|+ |++|..+++.....|++ |+++++++++.+.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~-v~~~~r~~~~~~~   46 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKA   46 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999999998 8888888776543

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.00098  Score=44.31  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~l~~   48 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAK-LALVDLEEAELAA   48 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            5789999998 99999999999999998 8989888877654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.28  E-value=0.00097  Score=42.75  Aligned_cols=40  Identities=25%  Similarity=0.113  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~   44 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEEAAER   44 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4678999998 99999999988888998 9999998876654

>PRK04148 hypothetical protein; Provisional

Probab=97.28  E-value=0.00075  Score=40.34  Aligned_cols=45  Identities=18%  Similarity=0.114  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...++.+++++|.| .|..+++.+...|.+ |+++|.+++..+.+++
T Consensus        13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~~-ViaIDi~~~aV~~a~~   57 (134)
T PRK04148         13 EKGKNKKIVELGIG-FYFKVAKKLKESGFD-VIVIDINEKAVEKAKK   57 (134)
T ss_pred             ccccCCEEEEEEec-CCHHHHHHHHHCCCE-EEEEECCHHHHHHHHH
Confidence            33457899999999 887666666688998 9999999998876654

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.26  E-value=0.0011  Score=43.29  Aligned_cols=42  Identities=24%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +++.++|.|+ +++|.++++.....|++ |+.+.++.+|++.+.
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~-vvl~aRR~drL~~la   47 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAK-VVLAARREERLEALA   47 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCe-EEEEeccHHHHHHHH
Confidence            3578899999 89999999999999999 999999999988764

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0011  Score=43.21  Aligned_cols=39  Identities=18%  Similarity=0.144  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |++|..+++.+...|++ |+.+++++++.+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~-Vi~~~r~~~~~~   48 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGAD-VLIAARTESQLD   48 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            5789999998 89999999998889997 998988877654

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.25  E-value=0.00093  Score=42.88  Aligned_cols=43  Identities=21%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      -|.+|||.|+ .++|+...+-....|-+ ||++.+++++++.+++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~-VIi~gR~e~~L~e~~~   47 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNT-VIICGRNEERLAEAKA   47 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCE-EEEecCcHHHHHHHHh
Confidence            4789999998 79999999988899998 9999999999987764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.0012  Score=42.39  Aligned_cols=39  Identities=8%  Similarity=0.096  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |++|..+++.+...|.+ |+.+++++++.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~~~~~~   43 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLNQEKLE   43 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999999889997 888888876654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.24  E-value=0.0011  Score=48.24  Aligned_cols=50  Identities=20%  Similarity=0.131  Sum_probs=40.8

Q ss_pred             HHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         46 VHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        46 ~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ..+. ...+.+.|++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus        68 ~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~ekl~~  119 (576)
T PLN03209         68 IEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSAQRAES  119 (576)
T ss_pred             hhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence            3344 4566778999999998 99999999998889998 8888888887643

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.24  E-value=0.0012  Score=44.66  Aligned_cols=41  Identities=15%  Similarity=0.090  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ +++|...+......|++ |+.+++++++.+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCHHHHHHH
Confidence            5899999998 89999988888888998 99999998877543

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.23  E-value=0.0024  Score=40.07  Aligned_cols=40  Identities=25%  Similarity=0.322  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+.+++|+|+ |++|..++..+...|.+ |+++.+++++.+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~-V~l~~R~~~~~~~   67 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGAR-VVLVGRDLERAQK   67 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence            5789999997 99999988888888876 8888888776554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.23  E-value=0.0012  Score=42.85  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   46 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSAEKLASL   46 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999998899998 88898887766543

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0012  Score=43.18  Aligned_cols=40  Identities=13%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++++|.|+ +++|..+++.+...|++ |+++++++++.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   47 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRNEENLKK   47 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999999998 8888888776543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.21  E-value=0.0015  Score=43.63  Aligned_cols=37  Identities=19%  Similarity=0.215  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+++++|+|+|++|.+++..+...|+++|+++.+++
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3578999999999999998888889998899998875

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.21  E-value=0.0012  Score=41.19  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=32.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|.+|...+.++...|.+ |...+.+++.++.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHHHhhh
Confidence            588999999999999998888999 999999999876654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.20  E-value=0.0031  Score=38.88  Aligned_cols=51  Identities=25%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             HHHHH-Hhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         45 GVHAC-KRS-GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        45 a~~~~-~~~-~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+.++ +.. .+-.|++++|.|-|.+|.-+++.++.+|++ |++++.+|-+.-.
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~alq   61 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIRALQ   61 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHHHHH
T ss_pred             HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHHHHH
Confidence            34444 333 356899999999999999999999999999 9999999876543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0014  Score=43.68  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~-Vi~~~R~~~~l~~   79 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGAT-VVAVARREDLLDA   79 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4688999998 99999999988888998 9999998876543

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0013  Score=41.90  Aligned_cols=40  Identities=18%  Similarity=0.159  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~~~~~~   45 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQKELEE   45 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCHHHHHH
Confidence            4688999998 99999999888888998 9999888876543

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.19  E-value=0.0014  Score=42.60  Aligned_cols=41  Identities=24%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~l   45 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKSAAGLQEL   45 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999998889998 88888887665443

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.18  E-value=0.0015  Score=42.24  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~~~~~~   48 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRDPAKLA   48 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999988888998 888888876654

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=97.17  E-value=0.0004  Score=41.58  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++|+|+|.++..++++++.+|++ |++++.++++..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~-v~v~d~r~e~~~   35 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFR-VTVVDPRPERFP   35 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEE-EEEEES-CCC-T
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCE-EEEEcCCccccC
Confidence            57889999999999999999999 999988877544

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0015  Score=42.45  Aligned_cols=42  Identities=33%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSA-G-PIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~-G-~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +..+++++|.|+ | ++|..+++.+...|++ |+++++++++.+.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~   57 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIHERRLGE   57 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            345789999997 7 7999999999999998 8888887766543

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0015  Score=42.38  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ +++|..+++.....|++ |+.+++++++.+.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~   47 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDEERLAS   47 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence            4789999998 89999999999999998 9999888876553

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0013  Score=44.58  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++++.
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~~~~l~~   46 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGAR-LVLAARDEEALQA   46 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4689999998 89999999999999998 8899898887654

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0015  Score=41.46  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ++++++|.|+ |.+|..+++.+...|++ |+.+++++++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~~~   43 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGAAP   43 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCChHh
Confidence            3789999998 99999999988888998 9999887665

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0017  Score=41.57  Aligned_cols=40  Identities=30%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~   48 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGAR-VVAAARNAAALDR   48 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4689999998 89999999999999998 8889888766543

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0015  Score=42.21  Aligned_cols=42  Identities=29%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .-++++++|.|+ |.+|..+++.+...|.+ |+.+++++++.+.
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~~~~~~   50 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSEAALAA   50 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            357789999998 99999999999999998 9999887765543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.14  E-value=0.0017  Score=42.04  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r~~~~~~~   51 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSARKAEELEE   51 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999998889998 8988888776543

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0019  Score=42.42  Aligned_cols=40  Identities=18%  Similarity=0.010  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~   43 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHR-VVGTVRSEAARAD   43 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCE-EEEEeCCHHHHHH
Confidence            4678999998 99999999988888998 9999888876654

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0017  Score=41.98  Aligned_cols=40  Identities=23%  Similarity=0.165  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   48 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARHLDALEK   48 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence            4789999998 89999999999899998 8888888776543

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.13  E-value=0.0019  Score=41.48  Aligned_cols=41  Identities=20%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ..++++++|.|+ |.+|..+++.+...|++ |+++++++++.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~-Vi~~~r~~~~~~   50 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGAT-VILLGRTEEKLE   50 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCc-EEEEeCCHHHHH
Confidence            457899999998 99999998888888997 899988876543

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0018  Score=42.27  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |++|..+++.+...|++ |+.+++++++.+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~   47 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQEKVD   47 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            5789999998 99999999988889998 999988876653

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.13  E-value=0.0039  Score=43.78  Aligned_cols=45  Identities=16%  Similarity=0.126  Sum_probs=37.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +--.+++++|+|+|.+|.+++..+...|++.++++.++.+|.+.+
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L  221 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI  221 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            334678999999999999999999999988799998887775443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=97.13  E-value=0.0015  Score=42.87  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ...+-.+++|+|+|.++..++++++.+|++ |+++|.+++
T Consensus        96 ~~~p~~~L~IfGaG~va~~la~la~~lGf~-V~v~D~R~~  134 (246)
T TIGR02964        96 EAPPAPHVVLFGAGHVGRALVRALAPLPCR-VTWVDSREA  134 (246)
T ss_pred             ccCCCCEEEEECCcHHHHHHHHHHhcCCCE-EEEEeCCcc
Confidence            346778999999999999999999999999 888887765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0018  Score=42.27  Aligned_cols=39  Identities=28%  Similarity=0.284  Sum_probs=33.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~   44 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKE   44 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            678999998 99999999888888998 8888888877653

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0017  Score=41.52  Aligned_cols=39  Identities=21%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |++|..+++.....|.+ |+++++++++.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~~~~~   44 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQKKLE   44 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCChHHHH
Confidence            4679999998 99999999988889998 999988887654

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0019  Score=41.96  Aligned_cols=41  Identities=27%  Similarity=0.247  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++++|.|+ |++|..++..+...|++ |+++++++++.+.+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   45 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRNAEKLEAL   45 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            4678999998 99999999988889998 99998887765433

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0018  Score=41.73  Aligned_cols=38  Identities=13%  Similarity=0.182  Sum_probs=32.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++++|.|+ |.+|..+++.+...|++ |+++.+++++.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~~~~~   40 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIAPQVT   40 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            468999998 99999999999999998 888888766543

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0017  Score=41.85  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..++..+...|.+ |+.+++++++.+.
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~-V~~~~r~~~~~~~   44 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGAD-VVLAARTAERLDE   44 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            5689999998 89999999998899998 8888888776543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.11  E-value=0.0048  Score=39.91  Aligned_cols=44  Identities=25%  Similarity=0.216  Sum_probs=35.8

Q ss_pred             HHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCc--EEEEEecC
Q psy16556         47 HACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGAR--VICVCKYV   90 (100)
Q Consensus        47 ~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~--~v~~~~~~   90 (100)
                      .+++..+ --.+.+++|+|+|+.|..++..+...|.+  ++++++++
T Consensus        14 ~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          14 NALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             HHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            3444433 24578999999999999999988889998  89999988

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0019  Score=41.64  Aligned_cols=39  Identities=21%  Similarity=0.107  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |.+|..+++.+...|++ |+.++++++..+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~~~~~~   53 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRSEDVAE   53 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999888889998 888888776543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.09  E-value=0.002  Score=39.58  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=32.5

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         60 VLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        60 vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      |+|+|+ |.+|..+++.+...|.+ |+++.+++++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHE-VTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCE-EEEEecCchhccc
Confidence            789998 99999999999999987 9999999988663

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.09  E-value=0.00099  Score=44.28  Aligned_cols=49  Identities=24%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++.++++|++||-+|+| -|-+++.+++..|++ |++++.+++..+.+++
T Consensus        55 ~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~-v~gitlS~~Q~~~a~~  103 (273)
T PF02353_consen   55 CEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGCH-VTGITLSEEQAEYARE  103 (273)
T ss_dssp             HTTTT--TT-EEEEES-T-TSHHHHHHHHHH--E-EEEEES-HHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCcE-EEEEECCHHHHHHHHH
Confidence            377899999999999987 455667788888998 9999999998887753

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.08  E-value=0.0026  Score=40.11  Aligned_cols=50  Identities=18%  Similarity=0.183  Sum_probs=41.2

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      +....+.++++++-+|+|. |.+.+++++..+. .+|+++|.+++..+.+++
T Consensus        33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~   83 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRR   83 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            3566888999999999988 8889999887653 359999999998887653

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.002  Score=41.70  Aligned_cols=40  Identities=23%  Similarity=0.144  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~~~~~~   46 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAER   46 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4689999998 89999999998899998 8888888776543

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0019  Score=41.70  Aligned_cols=39  Identities=10%  Similarity=0.113  Sum_probs=33.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      |++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~-Vi~~~r~~~~~~~   40 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGAN-VVITGRTKEKLEE   40 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            578999998 89999999999999997 9999888776543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.07  E-value=0.0079  Score=40.24  Aligned_cols=48  Identities=23%  Similarity=0.334  Sum_probs=40.5

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..++++|++||=+|+|- |.+++-+|+..|.+ |+.++-+++..+.+++
T Consensus        66 ~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~-V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          66 EKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVT-VVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCE-EEEeeCCHHHHHHHHH
Confidence            789999999999999864 44567788888999 9999999998877754

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.002  Score=41.24  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |.+|..+++.+...|++ |+++++++++.+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~-v~~~~r~~~~~~   44 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGAR-VAITGRDPASLE   44 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCHHHHH
Confidence            4689999998 99999999999999998 888888766544

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0023  Score=41.01  Aligned_cols=39  Identities=21%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |++|..++..+...|.+ |+++++++++.+
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~   45 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLAAEAR   45 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999999889998 888888777554

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0023  Score=41.20  Aligned_cols=39  Identities=23%  Similarity=0.075  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|.+ |+.+++++++.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~-Vi~~~r~~~~~~   46 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAH-VIVSSRKLDGCQ   46 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            3678999998 89999999999989997 999988776554

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0022  Score=41.39  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..++..+...|++ |+.+++++++.+.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~~~~~~~   45 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARRQAELDQ   45 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4678999998 89999999988889998 8888888776654

>PRK06194 hypothetical protein; Provisional

Probab=97.06  E-value=0.0022  Score=42.16  Aligned_cols=39  Identities=15%  Similarity=0.194  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .++++||.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~   44 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMK-LVLADVQQDALD   44 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeCChHHHH
Confidence            3678999998 99999999988889998 888888766544

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0023  Score=41.51  Aligned_cols=40  Identities=23%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~   46 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCH-LHLVARDADALEA   46 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999988889997 9999888776554

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0024  Score=41.60  Aligned_cols=40  Identities=23%  Similarity=0.177  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   45 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGAR-VAIVDIDADNGAA   45 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4689999998 99999999998889998 9999888775443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.04  E-value=0.0026  Score=41.07  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |.+|..+++.+...|.+ |+.+++++++.+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~~~~~   45 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQDGAN   45 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCChHHHH
Confidence            4789999998 99999999999999998 888888876553

>PRK06182 short chain dehydrogenase; Validated

Probab=97.03  E-value=0.0025  Score=41.68  Aligned_cols=40  Identities=20%  Similarity=0.037  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~l~~   42 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYT-VYGAARRVDKMED   42 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            3678999998 99999999998889998 9999888877653

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0025  Score=41.11  Aligned_cols=39  Identities=28%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..++..+...|++ |+.+++++++.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~   45 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAK-VVVADRDAAGGE   45 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHH
Confidence            4789999998 89999998888888998 899988877644

>PRK06196 oxidoreductase; Provisional

Probab=97.02  E-value=0.0024  Score=42.80  Aligned_cols=40  Identities=23%  Similarity=0.137  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~~~~~~~   65 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARRPDVARE   65 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4689999998 89999999888889998 8888888776543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.01  E-value=0.0027  Score=40.38  Aligned_cols=40  Identities=25%  Similarity=0.225  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|+|+ |.+|..++......|.+ |+++++++++.+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~   44 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEEAAEA   44 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHHHH
Confidence            3578999998 99999999998889998 9999888776543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.00  E-value=0.0044  Score=40.96  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ...+++++|+|+|++|..++..+...|.+ |+++++++++.+.
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~-v~v~~R~~~~~~~  155 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCN-VIIANRTVSKAEE  155 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            34578999999999999998888888986 8898888777543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.00  E-value=0.0028  Score=40.76  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |.+|..+++.....|.+ |+++++++++.+.
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~   43 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAK-VVIADLNDEAAAA   43 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence            4679999998 99999999988888998 8888888776543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.00  E-value=0.0023  Score=41.12  Aligned_cols=40  Identities=33%  Similarity=0.304  Sum_probs=33.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++||.|+ |.+|..++..+...|.+ |+++++++++.+.+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~-v~~~~r~~~~~~~~   41 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGAN-VVVNDLGEAGAEAA   41 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            367999998 99999999888889997 99998887765443

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.99  E-value=0.0042  Score=43.20  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             HHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         43 AVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        43 ~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...+..+ +..++++|++||-+|+| .|..+..+++..|++ |++++.+++..+.+++
T Consensus       153 ~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~-V~giDlS~~~l~~A~~  208 (383)
T PRK11705        153 EAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVS-VVGVTISAEQQKLAQE  208 (383)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH
Confidence            3344444 67788999999999985 455677888888887 9999999999887764

>PRK09186 flagellin modification protein A; Provisional

Probab=96.99  E-value=0.0028  Score=40.85  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |.+|..++..+...|++ |+.+.+++++.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~~~~~~   42 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGI-VIAADIDKEALN   42 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecChHHHH
Confidence            5789999998 89999999999889998 888888877654

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0029  Score=42.52  Aligned_cols=40  Identities=20%  Similarity=0.091  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++++|.|+ +++|..++..+...|++ |+.+.+++++.+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~-Vil~~R~~~~~~~   53 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAE-VILPVRNRAKGEA   53 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999888889998 8888888776543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.97  E-value=0.0028  Score=40.98  Aligned_cols=40  Identities=25%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|.+ |+.+++++++.+.
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~   45 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARL   45 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHH
Confidence            3678999998 99999999999889998 8888888876544

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0031  Score=41.21  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |.+|..+++.+...|++ |+.+++++++.+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~-V~~~~r~~~~~~   45 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAA-VMIVGRNPDKLA   45 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHH
Confidence            3689999998 99999999999999997 998888766543

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.003  Score=42.87  Aligned_cols=40  Identities=18%  Similarity=0.094  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R~~~~l~~   47 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAK-VVLLARGEEGLEA   47 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4678999998 99999999999889998 8888888876653

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0024  Score=41.24  Aligned_cols=39  Identities=18%  Similarity=0.033  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~   45 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAPDDE   45 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChhhHH
Confidence            4679999998 89999999888889998 787877776653

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.95  E-value=0.0031  Score=40.69  Aligned_cols=39  Identities=23%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .++++||.|+ |++|..+++.+...|++ |+.+++++++.+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~-vvl~~r~~~~~~   47 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAE-IIINDITAERAE   47 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCHHHHH
Confidence            4788999998 89999999988889998 888888876654

>PRK08643 acetoin reductase; Validated

Probab=96.94  E-value=0.0031  Score=40.74  Aligned_cols=39  Identities=18%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r~~~~~~~   41 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDYNEETAQA   41 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            578999998 99999999999889998 8888888765543

>PRK09242 tropinone reductase; Provisional

Probab=96.94  E-value=0.0033  Score=40.64  Aligned_cols=40  Identities=20%  Similarity=0.185  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~   48 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDADALAQ   48 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999889998 8888888776543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.94  E-value=0.0039  Score=40.17  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -.|.+|+|.|.|.+|..+++++...|.+.|.+.|.+.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3689999999999999999999999998666677666

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.0037  Score=39.97  Aligned_cols=41  Identities=20%  Similarity=0.100  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ..+++++|.|+ |.+|..++..+...|.+ |+++++++++.+.
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~   45 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWD-LALVARSQDALEA   45 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            35678999998 99999999999889997 9999888776543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.94  E-value=0.0029  Score=40.48  Aligned_cols=38  Identities=29%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |.+|..++..+...|.+ |+++++++++.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r~~~~~   43 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDICGDDA   43 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence            4689999998 99999998888888998 99998886544

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0035  Score=40.60  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=33.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~   41 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGAT-LGLVARRTDALQA   41 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            468999998 99999999888888997 9999888777653

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.003  Score=40.57  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |++|..++..+...|++ |+++++++++.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~-V~~~~r~~~~~~~~   41 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQ-VIACGRNQSVLDEL   41 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            56899998 99999988888888998 99999988776543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.93  E-value=0.0036  Score=40.38  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |.+|..++......|++ |+.+++++++.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~-v~~~~r~~~~~~   49 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAH-VLVNGRNAATLE   49 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeCCHHHHH
Confidence            5789999998 89999999888888998 999988876543

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0035  Score=41.03  Aligned_cols=38  Identities=18%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++++|.|+ |.+|..++..+...|++ |+++++++++.+
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~   41 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRNPEKQE   41 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCCHHHHH
Confidence            578999998 99999999988888998 888888776654

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0038  Score=40.06  Aligned_cols=38  Identities=24%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |.+|..+++.+...|.+ |+.+++++++.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r~~~~~   43 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADINAEGA   43 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence            4688999998 99999999988888998 89898877654

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0033  Score=40.71  Aligned_cols=38  Identities=21%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++++|.|+ |.+|..+++.+...|.+ |+++++++++.+
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~-Vi~~~r~~~~~~   39 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQ-LVLAARNETRLA   39 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            367999998 99999999988889987 999988876544

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.91  E-value=0.0029  Score=44.04  Aligned_cols=41  Identities=17%  Similarity=0.214  Sum_probs=35.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|+|+|+|.+|+.+++.+...+-.+|++.+++.++.+.+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~   42 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA   42 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            57999999999999999988888455999999999887764

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.91  E-value=0.0034  Score=42.12  Aligned_cols=40  Identities=15%  Similarity=0.080  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~   45 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWH-VIMACRNLKKAEA   45 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4788999998 99999999888888988 8888888776543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.91  E-value=0.004  Score=33.53  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++|+|+|.+|.-++..++..|.+ |..+++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~-vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKE-VTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE-EEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcE-EEEEeccch
Confidence            589999999999999999999988 888877654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0038  Score=40.59  Aligned_cols=39  Identities=23%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEecChhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYG-ARVICVCKYVGIR   93 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g-~~~v~~~~~~~~~   93 (100)
                      +..+++++|.|+ |++|..+++-+...| ++ |+++++++++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~-V~~~~r~~~~   45 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPAR-VVLAALPDDP   45 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCe-EEEEeCCcch
Confidence            467889999998 999999888766664 77 8888888765

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0035  Score=41.30  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~~~~l~   44 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVDKPGLR   44 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4788999998 89999999998889998 888888776654

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.0033  Score=41.13  Aligned_cols=38  Identities=21%  Similarity=0.120  Sum_probs=32.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~   40 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYE-VWATARKAEDVEA   40 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            47899998 99999999999889998 8988888776554

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0036  Score=40.17  Aligned_cols=39  Identities=26%  Similarity=0.179  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++++|.|+ |.+|..+++.+...|++ |+.+.+++++.+
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~   43 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADRDAEAAE   43 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecCCHHHHH
Confidence            4679999998 99999998888888988 888888776544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.88  E-value=0.0026  Score=46.87  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            3589999999999999999999999998 88887654

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0037  Score=40.50  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |.+|..+++.+...|++ |+++++++++.+.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~   41 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWR-VGAYDINEAGLAAL   41 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHH
Confidence            57999998 99999999988889998 88888888776543

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0033  Score=41.89  Aligned_cols=39  Identities=23%  Similarity=0.109  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+.+++++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            5789999998 99999999888888998 888888776644

>PRK05717 oxidoreductase; Validated

Probab=96.87  E-value=0.0039  Score=40.29  Aligned_cols=39  Identities=26%  Similarity=0.101  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .|++++|.|+ |.+|..++..+...|++ |+.+++++++.+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~-v~~~~~~~~~~~   48 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQ-VVLADLDRERGS   48 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCE-EEEEcCCHHHHH
Confidence            4789999998 99999999988888998 888877765443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.86  E-value=0.0038  Score=35.30  Aligned_cols=42  Identities=26%  Similarity=0.267  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |+++||-+|+|. |..++.+++. .+.+ |+++|.+++-.+.+++
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGAR-VVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTSE-EEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHH
Confidence            688999999875 6667777774 6677 9999999998888764

...

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0035  Score=39.82  Aligned_cols=39  Identities=13%  Similarity=0.053  Sum_probs=32.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |++|..+++.+...|.+ |+++++++++.+.+
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~   41 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQ-VTATVRGPQQDTAL   41 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCE-EEEEeCCCcchHHH
Confidence            57899998 99999998888888997 99998887765433

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.86  E-value=0.0037  Score=41.66  Aligned_cols=39  Identities=10%  Similarity=0.037  Sum_probs=34.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++|.|+|+|.+|...++.+...|.+ |+..+.++++.+.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~l~~~   42 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYD-VTIVDVSEEILKNA   42 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHH
Confidence            5799999999999999988888998 99999999887643

>PRK08264 short chain dehydrogenase; Validated

Probab=96.85  E-value=0.0041  Score=39.66  Aligned_cols=40  Identities=25%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |.+|..+++.+...|.++|+++++++++.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT   45 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence            4678999998 999999999999999934999988876654

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0034  Score=40.71  Aligned_cols=38  Identities=18%  Similarity=0.083  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.++++++..
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~~~~   43 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGAN-LILLDISPEIE   43 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHH
Confidence            4689999998 99999999988889998 88888776533

>PRK06847 hypothetical protein; Provisional

Probab=96.84  E-value=0.0036  Score=42.69  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..+|+|+|+|+.|++++..++..|.+ |++++++++
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence            46799999999999999999999999 888887653

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.83  E-value=0.0035  Score=40.54  Aligned_cols=36  Identities=33%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~-v~~~~r~~~   43 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGAR-VVLVDRSEL   43 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCchH
Confidence            4688999998 99999999988889998 888887753

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.83  E-value=0.0045  Score=40.52  Aligned_cols=39  Identities=13%  Similarity=0.155  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..++..+...|++ |+++++++++.+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~   48 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAK-VAILDRNQEKAE   48 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4788999998 89999999998889998 888888776543

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.82  E-value=0.005  Score=37.11  Aligned_cols=33  Identities=30%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++++|+|+ +++|..+++.....|.++|+.+.++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence            47899998 8999998888888888778888887

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.80  E-value=0.0039  Score=42.85  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +..+|+|+|+|+.|++++..++..|.+ |.+++++++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIK-VKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCcc
Confidence            346799999999999999999999999 999987754

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.80  E-value=0.0048  Score=39.52  Aligned_cols=39  Identities=21%  Similarity=0.149  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++++||.|+ |.+|..++..+...|.+ |+.+++++++.+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r~~~~~~   41 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDLNREAAE   41 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHH
Confidence            4688999998 99999999998889998 888888776644

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.79  E-value=0.005  Score=39.80  Aligned_cols=38  Identities=13%  Similarity=0.170  Sum_probs=32.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++++|.|+ |.+|..++..+...|++ |+.+++++++.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~-vi~~~r~~~~~~   40 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYR-VAVADINSEKAA   40 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHH
Confidence            578999998 89999999888888998 888888776543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.79  E-value=0.0031  Score=42.08  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+|+|+|+.|++++..++..|.+ |++++++++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGID-VTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccc-cccchhcccc
Confidence            589999999999999999999999 9999887653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN00203 glutamyl-tRNA reductase

Probab=96.78  E-value=0.0041  Score=44.87  Aligned_cols=42  Identities=21%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+.+|+|+|+|.+|.+++..+...|+++|+++.+++++.+.+
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L  306 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL  306 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence            378999999999999999999999987799999998886554

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.005  Score=39.50  Aligned_cols=37  Identities=22%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++|.|+ |++|..+++.+...|.+ |+++++++++.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~~~~~~   39 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGAR-LYLAARDVERLE   39 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCCHHHHH
Confidence            57999998 99999999988888998 999988887654

>KOG1014|consensus

Probab=96.77  E-value=0.0036  Score=42.22  Aligned_cols=42  Identities=21%  Similarity=0.184  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcC-CHHHHH-HHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLV-TILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~-~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +.|++.+|.|+ +++|.. +-++|+ .|.+ |+.+.|+++|++..+
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~n-vvLIsRt~~KL~~v~   90 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGFN-VVLISRTQEKLEAVA   90 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCCE-EEEEeCCHHHHHHHH
Confidence            34799999999 799977 566776 9999 999999999998764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.77  E-value=0.005  Score=40.96  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=34.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Confidence            4799999999999998888888998 999999998877653

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0054  Score=39.36  Aligned_cols=39  Identities=18%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..+++.+...|.+ |+++++++++.+.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~-v~~~~r~~~~~~~   41 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRD-LALCARRTDRLEE   41 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            568999998 99999988888888987 8888888776543

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.76  E-value=0.0059  Score=39.01  Aligned_cols=39  Identities=18%  Similarity=0.197  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |.+|..++..+...|.+ |+++++++++.+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~-Vi~~~r~~~~~~   45 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVN-VGLLARTEENLK   45 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            3678999998 89999999888889997 988988876544

>PRK06753 hypothetical protein; Provisional

Probab=96.75  E-value=0.0037  Score=42.63  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+|+|+|+.|++++..++..|.+ |.+++++++
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCc
Confidence            699999999999999999999999 888987764

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0059  Score=39.41  Aligned_cols=38  Identities=24%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++++|.|+ |.+|..++..+...|.+ |+.+++++++.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~-v~~~~r~~~~~~   40 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDR-VLALDIDAAALA   40 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            568999998 89999998888888988 888888877654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.74  E-value=0.0055  Score=39.50  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=32.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~   39 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQE   39 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            6899998 99999999999889998 8999888876654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.74  E-value=0.0098  Score=34.00  Aligned_cols=48  Identities=17%  Similarity=0.126  Sum_probs=38.6

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ....+.++++++-+|+|. |..+..+++..+..+++.+|.++...+.++
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            445677788999999977 888888888876555999999988877764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.0055  Score=39.34  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..++.-+...|++ |+.+++++++.+.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~   45 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGAT-LILCDQDQSALKDT   45 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            4789999998 79999998888889998 88888888776543

>PLN02253 xanthoxin dehydrogenase

Probab=96.73  E-value=0.006  Score=39.99  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~~~~~~   55 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDLQDDLG   55 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence            4789999998 99999998888888998 88888776544

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.71  E-value=0.0035  Score=43.29  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..|+|+|+|++|+++...++..|.+ |.++++.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLD-VTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence            4699999999999999999999999 9999887

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.71  E-value=0.0062  Score=39.42  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+++++|.|+ |++|..+++.....|++ |+++.++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5789999998 89999999999899998 8877766

>PRK08589 short chain dehydrogenase; Validated

Probab=96.71  E-value=0.0052  Score=40.25  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++++++|.|+ +++|..+++.....|++ |++++++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r~   39 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIA   39 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCc
Confidence            4789999998 89999999888888998 8888877

>PRK12742 oxidoreductase; Provisional

Probab=96.70  E-value=0.0058  Score=38.89  Aligned_cols=38  Identities=24%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+.+ ++++.
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~~~~~~~~   44 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTYAGSKDAA   44 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCCHHHH
Confidence            4789999998 99999999999999998 766543 44443

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.0059  Score=39.93  Aligned_cols=37  Identities=24%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~~~~~   38 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDADGLA   38 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            36899998 99999999988889998 888888776544

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.0069  Score=39.12  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++.|+++++++++.+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE   45 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence            5788999998 899999999999999986888887766543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.67  E-value=0.005  Score=43.72  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCC
Confidence            578999999999999999999999998 88887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.67  E-value=0.0071  Score=44.90  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=48.1

Q ss_pred             ccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         13 LSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        13 ~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+|..+++...+.+ +-++.|++=+- .+         ....-.+++++|.|+ |++|..+++.+...|++ |++++++
T Consensus       379 ~~~~~~~~~~~~f~~-eyw~~e~~kl~~~~---------~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~-Vvi~~r~  447 (676)
T TIGR02632       379 VSEYVSLPEQEAFDI-EYWPLEEAKLRRMP---------KEKTLARRVAFVTGGAGGIGRETARRLAAEGAH-VVLADLN  447 (676)
T ss_pred             ccceecCchhhccch-hhhhhhHHhhccCC---------CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCC
Confidence            345666666666655 44444443211 00         011124789999998 99999999988889998 9989888


Q ss_pred             hhhhhh
Q psy16556         91 GIRIFP   96 (100)
Q Consensus        91 ~~~~~~   96 (100)
                      +++.+.
T Consensus       448 ~~~~~~  453 (676)
T TIGR02632       448 LEAAEA  453 (676)
T ss_pred             HHHHHH
Confidence            766543

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.64  E-value=0.0059  Score=44.13  Aligned_cols=41  Identities=27%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|+|+|++|.+++..+...|++ |+++.++.++.+.+
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~-V~i~nR~~e~a~~l  418 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGAR-VVIANRTYERAKEL  418 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            468999999999999999999999995 99998887766544

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.64  E-value=0.008  Score=38.85  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..++..+...|++ ++.+++++++.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~~~~~~   49 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAAN   49 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHH
Confidence            4789999998 89999999988889998 888877766554

>KOG2304|consensus

Probab=96.64  E-value=0.0041  Score=40.60  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=39.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..+-+.|.|+|+|.+|.-.+|++...|.+ |...+.+++.+..+++
T Consensus         7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~~-V~l~d~~~~aL~~A~~   52 (298)
T KOG2304|consen    7 NMAEIKNVAIVGAGQMGSGIAQVAATSGLN-VWLVDANEDALSRATK   52 (298)
T ss_pred             ccccccceEEEcccccchhHHHHHHhcCCc-eEEecCCHHHHHHHHH
Confidence            344557799999999999999999999999 9999999998877653

>PRK06184 hypothetical protein; Provisional

Probab=96.63  E-value=0.0043  Score=44.25  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=30.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|++++..+...|.+ |.++++.++
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~~~   37 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVS-FRLIEKAPE   37 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            4599999999999999999999999 999987654

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.0063  Score=39.28  Aligned_cols=37  Identities=32%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|.+ |+.+++++++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh
Confidence            4789999998 89999999998889998 8888887653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.62  E-value=0.0072  Score=40.24  Aligned_cols=40  Identities=18%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|.|+|+|.+|...++.+...|.+ |+..+.++++.+.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHHH
Confidence            5799999999999998888888988 999999988766543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.61  E-value=0.0089  Score=34.18  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++|.|.|.+|..+++.++..+.+ |++++.++++.+.+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~   39 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELRE   39 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHh
Confidence            67899999999999999996656 9999999988877653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.61  E-value=0.0061  Score=44.19  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=37.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++++|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~  458 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRTRVDELRE  458 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH
Confidence            6899999999999999999999998 9999999999887764

>PRK06484 short chain dehydrogenase; Validated

Probab=96.61  E-value=0.0077  Score=42.94  Aligned_cols=41  Identities=15%  Similarity=0.004  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .++.++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~  309 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDR-LLIIDRDAEGAKKL  309 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4788999998 89999999998899998 99998888776544

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.008  Score=39.30  Aligned_cols=39  Identities=13%  Similarity=-0.002  Sum_probs=32.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++||.|+ |.+|..+++.+...|.+ |+++++++++.+.+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~-v~~~~r~~~~~~~~   42 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDR-VAATVRRPDALDDL   42 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            57999998 99999999888888998 88888887765543

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.0074  Score=39.29  Aligned_cols=39  Identities=23%  Similarity=0.086  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~   42 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAA   42 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcc
Confidence            4578999998 99999999888888998 888888766543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.60  E-value=0.0051  Score=38.64  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|.|+|.|-+|+-++......|.+ |+.+|.++++.+.+++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~   41 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNN   41 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHT
T ss_pred             EEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhh
Confidence            688999999999999999999998 9999999999887753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.60  E-value=0.0031  Score=35.82  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++|||+|+|.+|..-++.+...|++ |+++.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~-v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAK-VTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBE-EEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCc
Confidence            578999999999999999999999998 8888766

>PRK07045 putative monooxygenase; Reviewed

Probab=96.59  E-value=0.0053  Score=42.21  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      -+|+|+|+|+.|+.+...++..|.+ |.++++.++
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~-v~v~E~~~~   39 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHS-VTVVERAAR   39 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCc-EEEEeCCCc
Confidence            4699999999999999999999998 999987664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.59  E-value=0.0066  Score=36.36  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      |+|+|+|.+|......++..|.+ |..+.+++ +.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~   36 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAI   36 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhh
Confidence            68999999999988888788988 88887777 55443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.59  E-value=0.0062  Score=44.90  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence            489999999999999999999999998 88887665

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.58  E-value=0.0087  Score=36.63  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .|++|+|+|+|.+|..-++.+...|++ |.+++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEc
Confidence            579999999999999999888889998 77774

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.58  E-value=0.0091  Score=38.86  Aligned_cols=39  Identities=23%  Similarity=0.119  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ +++|..++..+...|++ |+.+++++++.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~   48 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVD   48 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHH
Confidence            5688999998 89999988888888998 888888876654

>PRK07236 hypothetical protein; Provisional

Probab=96.57  E-value=0.0067  Score=41.77  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..+|+|+|+|+.|+.+...+...|.+ |+++++.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence            36799999999999999999999999 999987653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.57  E-value=0.0091  Score=38.60  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++|+|+|.+|...++.+...|.+ |++++.++++.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~   38 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEERVEE   38 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHHHHH
Confidence            3689999999999999999999999 9999999998765

>PRK07190 hypothetical protein; Provisional

Probab=96.56  E-value=0.0056  Score=43.76  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      -.|+|+|+|++|+++...+...|.+ |.++++.++.
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~~~   40 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSDGP   40 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCCcc
Confidence            4699999999999988888889999 8999877643

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.0089  Score=39.15  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=32.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |.+|..+++.+...|.+ |+.+++++++.+.
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~   42 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDR-VVATARDTATLAD   42 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            568999998 99999999888888988 8888888776543

>PRK08244 hypothetical protein; Provisional

Probab=96.56  E-value=0.005  Score=43.78  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=29.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+|+|+|++|++++..+...|.+ |.++++.++
T Consensus         4 dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~~~   36 (493)
T PRK08244          4 EVIIIGGGPVGLMLASELALAGVK-TCVIERLKE   36 (493)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            599999999999998888889999 999987655

>PRK14967 putative methyltransferase; Provisional

Probab=96.56  E-value=0.016  Score=37.15  Aligned_cols=48  Identities=27%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +....++++++||-.|+|. |...+.+++. +..+|+++|.+++..+.++
T Consensus        29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~   76 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSAR   76 (223)
T ss_pred             HHhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence            3445678899999999987 8888888775 6645999999998777654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.55  E-value=0.0082  Score=38.31  Aligned_cols=35  Identities=26%  Similarity=0.228  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|++|+|+|+|.+|..-++.+...|++ |+++++..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~-VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQ-LRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCE-EEEEcCCC
Confidence            478999999999999999999999998 88886653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.55  E-value=0.0079  Score=39.02  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++|.|+ +++|..+++.....|++ |+.+++++++.+.
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   39 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGAR-VVISSRNEENLEK   39 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHH
Confidence            6899998 89999999988889998 8999888776543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.55  E-value=0.012  Score=32.59  Aligned_cols=39  Identities=15%  Similarity=0.148  Sum_probs=31.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CcEEE-EEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYG---ARVIC-VCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g---~~~v~-~~~~~~~~~~~~~   98 (100)
                      ++.++|+|.+|.+.+.-....|   .+ |+ +.++++++.+.+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~-v~~~~~r~~~~~~~~~   43 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHE-VIIVSSRSPEKAAELA   43 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGE-EEEEEESSHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcee-EEeeccCcHHHHHHHH
Confidence            5778899999999998888888   55 77 4489999887653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.53  E-value=0.0086  Score=40.75  Aligned_cols=47  Identities=11%  Similarity=-0.038  Sum_probs=35.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         44 VGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        44 ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      |+|.-++..-.-++++|+|.|+ |-+|..++..+...|.+ |+++++..
T Consensus         2 ~~~~~~~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~-V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFS   49 (348)
T ss_pred             chhhhhhhcccccCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCC
Confidence            4555554333445689999998 99999999999999987 88887643

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.52  E-value=0.0075  Score=36.72  Aligned_cols=39  Identities=15%  Similarity=0.122  Sum_probs=33.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|..|.+++..+...|.+ |....++++..+.++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~~~~~~~~i~   39 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHE-VTLWGRDEEQIEEIN   39 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEE-EEEETSCHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCE-EEEEeccHHHHHHHH
Confidence            588999999999999999999977 999999887766543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02928 oxidoreductase family protein

Probab=96.51  E-value=0.0073  Score=41.49  Aligned_cols=34  Identities=21%  Similarity=0.507  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.+++
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~~-V~~~dr~  191 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGVK-LLATRRS  191 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCC
Confidence            479999999999999999999999998 9998775

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.51  E-value=0.028  Score=34.84  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCH-HHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSAGP-IGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~G~-~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      --.|++++|+|+|. +|..++..++..|++ |+++.++.+.+
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r~~~~l   81 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHSKTKNL   81 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEECCchhH
Confidence            45799999999986 699999999999997 88887775443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG1502|consensus

Probab=96.51  E-value=0.0088  Score=40.78  Aligned_cols=40  Identities=20%  Similarity=-0.011  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+..|+|.|+ |-+|..++..+...|.+ |.++.|++++.+.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-V~gtVR~~~~~k~   45 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-VRGTVRDPEDEKK   45 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCE-EEEEEcCcchhhh
Confidence            5789999999 99999999999999999 9999998887443

>KOG1207|consensus

Probab=96.51  E-value=0.007  Score=38.14  Aligned_cols=41  Identities=27%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCC-HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAG-PIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G-~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|..|++.|+| ++|...++-+...|++ |+++.++++.+..+
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~-ViAvaR~~a~L~sL   47 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQ-VIAVARNEANLLSL   47 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCE-EEEEecCHHHHHHH
Confidence            57889999995 8999999999999999 99999999887654

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.51  E-value=0.006  Score=42.21  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+|+|+|+|+.|++++..++..|.+ |.++++.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWA-VTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCc
Confidence            6799999999999999999899999 999987654

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.0077  Score=38.96  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~   44 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRP   44 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChh
Confidence            4789999998 89999999988889998 888877654

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=96.49  E-value=0.0054  Score=43.03  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=25.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+|+|+|+.|++++..+...|.+ |++++++++-
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~-V~vlE~~~~~   35 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGAR-VLVLERNKRV   35 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCccc
Confidence            489999999999999999999999 9999988654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06398 aldose dehydrogenase; Validated

Probab=96.49  E-value=0.0086  Score=38.94  Aligned_cols=37  Identities=14%  Similarity=0.086  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++++|.|+ |++|..++..+...|++ |+.+++++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~-Vi~~~r~~~~   42 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSN-VINFDIKEPS   42 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCccc
Confidence            4689999998 89999999999999998 8888776543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.49  E-value=0.0095  Score=39.56  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|.+|......+...|.+ |+.+++++++.+.++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~-V~~~~r~~~~~~~~~   40 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHD-VTLVARRGAHLDALN   40 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECChHHHHHHH
Confidence            589999999999888888888887 888888777665543

>PRK12831 putative oxidoreductase; Provisional

Probab=96.48  E-value=0.0088  Score=42.49  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+++|+|+|+|+.|+.++..++..|.+ |++++..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~  172 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL  172 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence            4689999999999999999999999998 8888753

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.47  E-value=0.01  Score=38.46  Aligned_cols=38  Identities=18%  Similarity=0.032  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|+|+ |.+|..++..+...|.+ |+++.+++++.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~~   54 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDKA   54 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHHH
Confidence            3689999998 99999999888888988 88887877664

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.47  E-value=0.021  Score=40.63  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE-EEecC
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVIC-VCKYV   90 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~-~~~~~   90 (100)
                      -.|.+|+|.|.|.+|..+++.+..+|++ |+ +.|.+
T Consensus       235 l~Gk~VaVqG~GnVg~~aa~~L~e~Gak-VVavSD~~  270 (454)
T PTZ00079        235 LEGKTVVVSGSGNVAQYAVEKLLQLGAK-VLTMSDSD  270 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEEcCC
Confidence            4789999999999999999999999999 66 55554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.47  E-value=0.012  Score=34.79  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            46899999999999999999999998898887643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.46  E-value=0.01  Score=39.98  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+|+|+|+|++|....-.+...|.+ |..+++++++.+.+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~-V~lv~r~~~~~~~i   41 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLP-VRLILRDRQRLAAY   41 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-eEEEEechHHHHHH
Confidence            4699999999998877777778988 88888887666544

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.46  E-value=0.0096  Score=39.87  Aligned_cols=37  Identities=19%  Similarity=-0.037  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|+|.|+ |.+|..++..+...|.+ |+++.++.++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCCcc
Confidence            4789999998 99999999988888998 8877676554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.46  E-value=0.0094  Score=37.87  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            35789999999999999999999999879998865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.46  E-value=0.0096  Score=42.30  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +.+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            3578999999999999999999999998 88887653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.45  E-value=0.0082  Score=42.71  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..++|+|+|+|+.|+.++..++..|.+ +++.++++
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~-v~vfE~~~   43 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHT-VVVFEREK   43 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCe-EEEEecCC
Confidence            457899999999999999999999998 88888654

>PRK05868 hypothetical protein; Validated

Probab=96.45  E-value=0.0077  Score=41.45  Aligned_cols=34  Identities=15%  Similarity=0.050  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+|+|+|+|+.|+++...+...|.+ |.++++.++
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Confidence            3699999999999998888889999 999987655

>PRK08328 hypothetical protein; Provisional

Probab=96.45  E-value=0.01  Score=38.46  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            57899999999999999999999999898887543

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.45  E-value=0.01  Score=41.63  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..++......|.+ |+++++++++.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~-Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAK-VVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999888888998 888888776543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.44  E-value=0.0096  Score=44.04  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..+++|+|+|+|+.|+.++..+...|.+ |++++.++.
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            4578999999999999999999999998 888876543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.44  E-value=0.0098  Score=38.85  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +.+|+|+|+|++|..+++.+...|..+++.+|.+.-
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            478999999999999999999999998988876543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.44  E-value=0.011  Score=39.34  Aligned_cols=39  Identities=18%  Similarity=0.101  Sum_probs=34.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++|.|+|+|.+|..++..+...|.+ |++.++++++.+.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~   43 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYD-VLLNDVSADRLEAG   43 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHH
Confidence            5799999999999988888888988 99999998877653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.44  E-value=0.011  Score=40.28  Aligned_cols=40  Identities=15%  Similarity=0.020  Sum_probs=34.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -++|.|+|+|.+|...++.+...|.+ |.+.+.+++..+.+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~   46 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL   46 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH
Confidence            36899999999999999998899999 99999998866543

>PRK08013 oxidoreductase; Provisional

Probab=96.43  E-value=0.0061  Score=42.21  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|++|++++..+...|.+ |.++++.++
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCCC
Confidence            3599999999999988888888999 999987765

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.01  Score=37.86  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=31.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++|.|+ |++|..+++.....|.+ |+.+++++++.+.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~-v~~~~r~~~~~~~   39 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHK-VTLVGARRDDLEV   39 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            5899998 89999999988888998 8888888877653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.43  E-value=0.012  Score=37.48  Aligned_cols=40  Identities=25%  Similarity=0.158  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|.|+ |.+|..+++.....|.. |+..++++++.+.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~-v~~~~~~~~~~~~   45 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAI-VGLHGTRVEKLEA   45 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence            4679999998 99999999888888986 8777777666543

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.43  E-value=0.012  Score=39.95  Aligned_cols=40  Identities=15%  Similarity=-0.007  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      -..+.+|||.|+ |.+|..+++.+...|.+ |+++++++++.
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r~~~~~   47 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLRDPAKS   47 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChHHH
Confidence            346789999998 99999999999889998 88877766543

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.42  E-value=0.011  Score=37.64  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~   95 (100)
                      +++++|.|+ |.+|..++..+...|++ |+++ ++++++.+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~   44 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQ   44 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence            568999998 99999998888788998 7777 77766543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.025  Score=36.27  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             ChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         32 TLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        32 ~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +.....++.........++...+++|++||-+|+|. |..++-+++..+ + |+.+++.++-.+.+++
T Consensus        48 pi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~-~-V~siEr~~~L~~~A~~  112 (209)
T COG2518          48 PIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG-R-VVSIERIEELAEQARR  112 (209)
T ss_pred             cCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC-e-EEEEEEcHHHHHHHHH
Confidence            333444453333344456888999999999999864 677777888877 4 9999998886666543

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.41  E-value=0.0095  Score=38.78  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAG---PIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G---~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+.++|.|++   ++|..+++.....|++ |++++++++.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~~~~   48 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLNDKA   48 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCChhh
Confidence            47899999973   8999999888889998 8888777543

>PRK07538 hypothetical protein; Provisional

Probab=96.41  E-value=0.0078  Score=41.84  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+|+|+|+.|+++...++..|.+ |.++++.++
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIE-VVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc-EEEEEcCCc
Confidence            589999999999999999999999 999987654

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.41  E-value=0.013  Score=37.54  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ |++|..++..+...|++ |+.+++++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCch
Confidence            4789999998 89999999988889998 88887754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.015  Score=39.04  Aligned_cols=40  Identities=10%  Similarity=0.133  Sum_probs=34.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|.|+|+|.+|..++..+...|.+ |+++++++++.+.++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~-V~~~d~~~~~~~~~~   44 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQ-VVLIDVMEGALERAR   44 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHH
Confidence            6799999999999988888888987 999999888776543

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.013  Score=38.36  Aligned_cols=39  Identities=21%  Similarity=0.088  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +.++++|.|+ |.+|..+++.+...|++ |+++.+++++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~-V~~~~r~~~~~~   48 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFP-VALGARRVEKCE   48 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            3468999998 99999999888888997 888877765543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.40  E-value=0.0061  Score=42.16  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ...|+|+|+|+.|++++..+...|.+ |.++++.+.
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   52 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQPA   52 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCCc
Confidence            35699999999999998888889998 999987654

>PLN02686 cinnamoyl-CoA reductase

Probab=96.39  E-value=0.011  Score=40.59  Aligned_cols=40  Identities=13%  Similarity=-0.015  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      ...+++|||.|+ |.+|..++..+...|.+ |+++.++.++.
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~-V~~~~r~~~~~   90 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYS-VRIAVDTQEDK   90 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence            345789999998 99999999999999998 77766665443

>PLN02583 cinnamoyl-CoA reductase

Probab=96.38  E-value=0.011  Score=39.35  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++++|+|.|+ |.+|..++..+...|.+ |+++.++
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~-V~~~~R~   39 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYT-VHAAVQK   39 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEEcC
Confidence            4678999998 99999999999999998 8888764

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.38  E-value=0.01  Score=40.50  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.+++++.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCCh
Confidence            478999999999999999999999998 9988876543

>PRK09126 hypothetical protein; Provisional

Probab=96.37  E-value=0.0076  Score=41.37  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      -.|+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            3599999999999999999889999 999987654

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.011  Score=37.98  Aligned_cols=35  Identities=26%  Similarity=0.200  Sum_probs=29.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ |.+|..++..+...|.+ |+++.+++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAH-VVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            4689999998 99999999988888998 88777754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.37  E-value=0.014  Score=39.27  Aligned_cols=42  Identities=17%  Similarity=0.051  Sum_probs=34.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~   98 (100)
                      ..+|.|+|.|.+|...+..++..|. .+|+++++++++.+.++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~   48 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR   48 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence            3689999999999999998888885 34999999988776654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.36  E-value=0.009  Score=45.98  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..|++|+|+|+||.|+.++..+...|.+ |++.+..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCC
Confidence            4589999999999999999999999998 88887653

>PRK06126 hypothetical protein; Provisional

Probab=96.36  E-value=0.0073  Score=43.47  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|++|+++...+...|.+ |+++++.+.
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr~~~   41 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVD-SILVERKDG   41 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            4699999999999999988999999 899987653

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.012  Score=37.31  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |.+|..+++.+...|++ |+.+++++++.+.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~-v~~~~r~~~~~~~~   41 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWR-VIATARDAAALAAL   41 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            47899998 99999998888788998 88888887765543

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.36  E-value=0.014  Score=37.50  Aligned_cols=38  Identities=24%  Similarity=0.167  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICV-CKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~   94 (100)
                      ++++++|.|+ |.+|..++..+...|.+ |++ ..+++++.
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~~~~r~~~~~   42 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYD-IAVNYARSRKAA   42 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHH
Confidence            4678999998 99999999999999998 554 45555543

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.014  Score=37.99  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ |++|..+++.....|.+ |+++++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCc
Confidence            3689999998 89999999998899998 88887765

>PRK06484 short chain dehydrogenase; Validated

Probab=96.35  E-value=0.012  Score=42.03  Aligned_cols=40  Identities=25%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ +++|..+++.+...|++ |+.+++++++.+.
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   44 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQ-VVVADRNVERARE   44 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            5789999998 89999999999999998 8999888777654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.35  E-value=0.0093  Score=41.28  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|+.+...++..|.+ |.++++.++
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGID-NVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence            4699999999999999888889999 999988764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.35  E-value=0.011  Score=40.07  Aligned_cols=37  Identities=24%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|+++||.|+ |.+|..+++.+...|.+ |+++++++..
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~   40 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDPPT   40 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCCCcc
Confidence            4789999998 99999999999999988 8888776543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.34  E-value=0.017  Score=38.60  Aligned_cols=39  Identities=21%  Similarity=0.093  Sum_probs=33.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -++|.|+|+|.+|...++.+...|.+ |++.++++++.+.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~   42 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMD-VWLLDSDPAALSR   42 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCCHHHHHH
Confidence            36799999999999999888888988 9999999888754

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.34  E-value=0.0074  Score=41.13  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=28.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      |+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~~-v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGLK-IALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCCE-EEEEeCCCc
Confidence            89999999999999888889998 999988764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.33  E-value=0.01  Score=39.08  Aligned_cols=36  Identities=17%  Similarity=0.116  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++.++|.|+ +  ++|..+++.+...|++ |+.++++++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~   44 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEA   44 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchH
Confidence            5789999998 4  8999999998889998 887776643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.33  E-value=0.013  Score=39.43  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=33.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+|.|+|+|.+|....+.+...|.+ |++.++++++.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~-V~v~d~~~~~~~~   40 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHE-VRLWDADPAAAAA   40 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCe-eEEEeCCHHHHHH
Confidence            4699999999999998888888998 9999999877664

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.32  E-value=0.014  Score=41.38  Aligned_cols=36  Identities=28%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+++|+|+|+|++|+.++.+++..|.+ |++++.++
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~~   49 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDGD   49 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            3578999999999999999999999998 88887554

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.32  E-value=0.01  Score=38.51  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~~~~   45 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIHGGD   45 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            4688999998 99999999999999998 8888776654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=96.32  E-value=0.0093  Score=38.99  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+|+|+|+.|+++...++..|.+ |.++++.+.
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLR-VLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC
Confidence            489999999999988888888998 999987654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.31  E-value=0.015  Score=37.06  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++|+|+|+|.+|...+..+...|++ |+++++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~-V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAH-IVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEcCC
Confidence            578999999999999999888889987 8877654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.30  E-value=0.011  Score=39.55  Aligned_cols=37  Identities=22%  Similarity=-0.008  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .++++||.|+ |.+|..++..+...|.+ |+++.+++++
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~   41 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYT-INATVRDPKD   41 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCCcc
Confidence            4789999998 99999999998889998 8777666543

>PRK06834 hypothetical protein; Provisional

Probab=96.30  E-value=0.0097  Score=42.54  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|++|++++..+...|.+ |.++++.++
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVD-VAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            4699999999999998888889999 999987654

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.014  Score=37.78  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~-v~~~~r~~~   43 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGAD-VALFDLRTD   43 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCcc
Confidence            4789999998 89999999999999998 888877643

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.29  E-value=0.0099  Score=41.33  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+|+|+||.|.++...+...|.+ |.++++.+.
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~~~   34 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERKPD   34 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecCCC
Confidence            589999999999999888899999 999987643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.012  Score=37.29  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |.+|..+++.+...|.+ |+.+++++++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~-v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQ-VIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            3678999998 99999999998889988 8888776544

>KOG0725|consensus

Probab=96.28  E-value=0.015  Score=38.56  Aligned_cols=42  Identities=21%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.|+.++|.|+ .++|..++..+...|++ |+++++++++.+..
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~-v~i~~r~~~~~~~~   48 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAK-VVITGRSEERLEET   48 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            35788999998 79999999999999999 99999998876543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.28  E-value=0.0094  Score=37.13  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         61 LVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        61 li~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|+|+|+.|++++..++..|.+.++++++++
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~   31 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND   31 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            5899999999999999999998788888764

...

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.28  E-value=0.0089  Score=43.28  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=26.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ++|+|+|+|+.|+.++.-++..|.+ +++.+++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-E-EEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCC-CeEEecCCC
Confidence            6899999999999999999999998 888887653

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.27  E-value=0.015  Score=38.87  Aligned_cols=39  Identities=18%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++|.|+|+|.+|.-.++.+...|.+ |+..+.++++.+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~~~   44 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELATAG   44 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            4799999999999988888888998 99999999988763

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.27  E-value=0.014  Score=43.04  Aligned_cols=42  Identities=17%  Similarity=0.144  Sum_probs=38.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .++|+|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~  441 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDHIETLRK  441 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh
Confidence            46899999999999999999999999 9999999999887764

>PRK06720 hypothetical protein; Provisional

Probab=96.27  E-value=0.02  Score=35.34  Aligned_cols=38  Identities=24%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .++.++|.|+ +++|..++......|++ |+++++++++.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~-V~l~~r~~~~~   53 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAK-VIVTDIDQESG   53 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCE-EEEEECCHHHH
Confidence            5789999998 79999998888888988 88888776654

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.015  Score=37.91  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=31.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++++|.|+ |++|..++..+...|.+ |+.+++++++.+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~~~~~   38 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWR-LALADVNEEGGE   38 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            36899998 99999998888888998 888888777654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.25  E-value=0.013  Score=30.75  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=25.0

Q ss_pred             EEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         62 VLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        62 i~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      |+|+|..|+.+...++..|.+ |.+.+.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~-v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYR-VTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSE-EEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCc-EEEEecCcc
Confidence            789999999999998888997 999987653

...

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.016  Score=38.93  Aligned_cols=34  Identities=26%  Similarity=0.188  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+++++|.|+ +++|..+++.....|++ |++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~-Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGAT-VYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecc
Confidence            4789999998 89999999999889998 8888776

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=96.24  E-value=0.0097  Score=41.30  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=29.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+|+|+||.|..++..++..|++ |++++..++
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~-VlvlEk~~~   37 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLD-VLVLEKGSE   37 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCe-EEEEecCCC
Confidence            489999999999999999999988 999987543

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.24  E-value=0.035  Score=38.96  Aligned_cols=45  Identities=22%  Similarity=0.163  Sum_probs=36.2

Q ss_pred             HHHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         47 HACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        47 ~~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.+..+. -.|.+|.|.|.|.+|..+++.+...|++ |++++.++.
T Consensus       196 ~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAk-vva~sds~g  241 (411)
T COG0334         196 EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAK-VVAVSDSKG  241 (411)
T ss_pred             HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCE-EEEEEcCCC
Confidence            34444444 4899999999999999999999999999 777765544

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.24  E-value=0.012  Score=39.81  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++.
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~  177 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTS  177 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCC
Confidence            589999999999999999999999998 9988764

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.016  Score=38.09  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++.++|.|+|++|..++..+. .|.+ |+.+++++++.+.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~-Vv~~~r~~~~~~~   39 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKK-VLLADYNEENLEA   39 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCE-EEEEeCCHHHHHH
Confidence            457888898999999888775 7887 8888888766543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.22  E-value=0.053  Score=36.59  Aligned_cols=46  Identities=13%  Similarity=0.078  Sum_probs=36.8

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..-...++++|+|+|..|...++.... .+.++|.+.+++++|.+.+
T Consensus       120 La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~  166 (304)
T PRK07340        120 LAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF  166 (304)
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            333567899999999999998888764 6878899999998876643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.21  E-value=0.015  Score=42.72  Aligned_cols=42  Identities=21%  Similarity=0.119  Sum_probs=37.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .++++|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~  441 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISAVNLMRK  441 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh
Confidence            36799999999999999999999999 9999999999887764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.21  E-value=0.0075  Score=41.03  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=38.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+|.|+|+|-+|.-+..++..+|++ |...+.|.+|++.+..
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n~~rl~~ldd  209 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDLNIDRLRQLDD  209 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCe-eEEEecCHHHHhhhhH
Confidence            45689999999999999999999999 9999999999988754

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.20  E-value=0.016  Score=37.01  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +++++|.|+ |++|..+++.+...|++ |+.+++++++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~   38 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQP-VIVSYRTHYP   38 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchh
Confidence            468999998 89999999988889998 8888877653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.20  E-value=0.016  Score=40.29  Aligned_cols=42  Identities=24%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         51 RSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        51 ~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +.+...+.+|+|.|+ |.+|..++..+...|.+ |+++++++++
T Consensus        54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R~~~~   96 (390)
T PLN02657         54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAREKSG   96 (390)
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEechhh
Confidence            345567889999998 99999999988888988 8888887653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.20  E-value=0.012  Score=40.55  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|+++...++..|.+ |+++++.+.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCCc
Confidence            4699999999999998888889999 899987764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.20  E-value=0.017  Score=39.40  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|.+|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCChhH
Confidence            478899999999999999999999998 9999877654

>TIGR02415 23BDH acetoin reductases

Probab=96.19  E-value=0.019  Score=36.93  Aligned_cols=36  Identities=17%  Similarity=0.041  Sum_probs=30.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      ++++|.|+ |.+|..+++.+...|++ |+.+.+++++.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~   37 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFA-VAVADLNEETA   37 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence            46899998 99999999888889998 88888776544

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.17  E-value=0.015  Score=37.95  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=28.8

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|+.++|.|+ +  ++|..+++.+...|++ |+..++++
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~-v~~~~r~~   44 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAE-LWFTYQSE   44 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCE-EEEEeCch
Confidence            5788999998 4  7999998888888998 87777663

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.17  E-value=0.018  Score=37.66  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ...+|+|+|+|++|..++..+...|..++.++|.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35789999999999999999999999888888754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.17  E-value=0.012  Score=40.61  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|+|+|+|+.|++++..+...|.+ |++++..+
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~-v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRS-VAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCc-EEEEcCCC
Confidence            699999999999998888888998 99998654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.16  E-value=0.017  Score=36.70  Aligned_cols=34  Identities=12%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4779999999999999999999999879998876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.16  E-value=0.014  Score=38.97  Aligned_cols=37  Identities=19%  Similarity=-0.005  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++|||.|+ |.+|..++..+...|.+ |+++++++++
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYT-VKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEcCCCc
Confidence            4688999998 99999999999889998 8877766543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.16  E-value=0.018  Score=37.33  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAG---PIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G---~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|++++|.|++   ++|..+++.+...|++ |+.+.+++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~   43 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQND   43 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCch
Confidence            57899999974   8999998888889998 88887764

>PRK07574 formate dehydrogenase; Provisional

Probab=96.15  E-value=0.017  Score=40.27  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|++|.|+|.|.+|+.+++.++.+|.+ |++.+++.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCC
Confidence            478999999999999999999999998 99988765

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.14  E-value=0.058  Score=36.54  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEecChhhhhhh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAK-AYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .-+..++++|+|+|..|...+.... ..+.++|.+.++++++.+.+
T Consensus       121 a~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~  166 (314)
T PRK06141        121 ARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL  166 (314)
T ss_pred             CCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            3356789999999999999876444 46777799999998886543

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.14  E-value=0.021  Score=39.19  Aligned_cols=43  Identities=21%  Similarity=0.129  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKA-YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.+++|+|+|+ |.+|..+++.+.. .|.++++.+.+++++.+.+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L  197 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL  197 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence            36789999999 8999998888764 5776699998887776553

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.14  E-value=0.011  Score=40.67  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=28.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|++|+++...+...|.+ |.++++.+.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~~   41 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGAS-VALVAPEPP   41 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCCC
Confidence            4599999999999988888888998 999987643

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.13  E-value=0.019  Score=36.54  Aligned_cols=36  Identities=25%  Similarity=0.171  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |.+|..++..+...|++ |+++.++++
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCch
Confidence            4578999998 99999999999989998 766655544

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.13  E-value=0.011  Score=42.60  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|+++...+...|.+ |+++++.++
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~~   57 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDDT   57 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence            4699999999999998888889999 888887653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.13  E-value=0.072  Score=35.62  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++++|+-+|+|. |.+++.+++ .|+.+|+++|.++...+.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            45789999999988 777766665 577669999999887776653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.12  E-value=0.012  Score=42.48  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ...|+|+|+|+.|+++...+...|.+ |.++++.++
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~-v~v~Er~~~   44 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVR-VLVLERWPT   44 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            35699999999999998888888999 999987654

>PRK07588 hypothetical protein; Provisional

Probab=96.12  E-value=0.014  Score=40.18  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+|+|+|+.|+++...+...|.+ |+++++.++
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHE-PTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCc-eEEEeCCCC
Confidence            689999999999988888888999 999987654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.11  E-value=0.022  Score=37.79  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++|.|+|+|.+|...+..+...|.+ |++++.++++.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~-V~~~d~~~~~~~~   41 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYD-VVMVDISDAAVDR   41 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCc-eEEEeCCHHHHHH
Confidence            4799999999999998888888998 9999999988753

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.09  E-value=0.018  Score=39.04  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.+++++
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~  170 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRK  170 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCC
Confidence            579999999999999999999999998 888876554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.09  E-value=0.019  Score=38.13  Aligned_cols=39  Identities=13%  Similarity=0.012  Sum_probs=33.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|.|.+|...+..++..|.+ |++.++++++.+.++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~-V~~~d~~~~~~~~a~   40 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHT-VYGVSRRESTCERAI   40 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            588999999999888888888887 999999988776653

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.09  E-value=0.022  Score=36.96  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~~   94 (100)
                      ++++++|.|+ +++|..++......|++ |+.+. +++++.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~   46 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSNVEEA   46 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHH
Confidence            5789999998 89999999988889998 76664 344443

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.09  E-value=0.023  Score=40.52  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .-.+++|+|+|.|..|++++.+++..|++ |++.|+++.+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~-V~~~D~~~~~   50 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCD-VVVADDNETA   50 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCE-EEEECCChHH
Confidence            34567899999999999999999999996 9999876544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.09  E-value=0.036  Score=39.70  Aligned_cols=40  Identities=13%  Similarity=0.082  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|+|+|++|..++..+...|++ +++.++++++.+.
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~~-V~i~~R~~~~~~~  370 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGAE-LLIFNRTKAHAEA  370 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            578999999999999999999999996 8888888776654

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.08  E-value=0.03  Score=34.61  Aligned_cols=42  Identities=21%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh-hhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI-RIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~-~~~~~~   98 (100)
                      .+++|.|+|-|..|.+..+-+|..|.+ |++..+... ..+.++
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~-V~Vglr~~s~s~~~A~   45 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVN-VIVGLREGSASWEKAK   45 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-E-EEEEE-TTCHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCC-EEEEecCCCcCHHHHH
Confidence            578999999999999999999999998 666555544 555554

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK06185 hypothetical protein; Provisional

Probab=96.08  E-value=0.014  Score=40.27  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ...|+|+|+|++|++++..+...|.+ |++++..+
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~   39 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA   39 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            35699999999999987777778998 99998764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.08  E-value=0.02  Score=36.98  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +.+|+|+|+|++|..++..+...|..+++++|.+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            5789999999999999999999999888888654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02650 dihydroflavonol-4-reductase

Probab=96.08  E-value=0.017  Score=39.20  Aligned_cols=38  Identities=18%  Similarity=0.111  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      ..++|||.|+ |.+|..++..+...|.+ |+++++++++.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r~~~~~   42 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPANV   42 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEcCcchh
Confidence            4578999998 99999999999889998 88777765443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.07  E-value=0.034  Score=37.94  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhh
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~   98 (100)
                      .++...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.++
T Consensus        72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar  122 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK  122 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            3355678899999999998 48899999998764 35999999998766554

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.07  E-value=0.017  Score=44.72  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..|++|+|+|+||.|+.++..+...|.+ |++.+..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccc
Confidence            4689999999999999999999999999 9999864

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.07  E-value=0.023  Score=38.21  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=31.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYG-ARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~   95 (100)
                      +++++|.|+ +++|..+++.+...| .+ |+.+.+++++.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~-V~l~~r~~~~~~   42 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWH-VIMACRDFLKAE   42 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCE-EEEEeCCHHHHH
Confidence            678999998 899999888888889 76 888888877654

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.07  E-value=0.014  Score=40.24  Aligned_cols=34  Identities=15%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ...|+|+|+|++|++++..+...|.+ |.++++.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            45699999999999988888888998 99998764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.06  E-value=0.021  Score=41.16  Aligned_cols=36  Identities=17%  Similarity=0.142  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHH-HHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTIL-AAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~-l~~~~g~~~v~~~~~~~   91 (100)
                      ....+|+|+|+||.|+.++. +++..|.+ |.+.++.+
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p   73 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLP   73 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCC
Confidence            35679999999999999866 67777888 88877654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.06  E-value=0.019  Score=39.36  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +.+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            47899999999999999999999998788888764

>PRK09135 pteridine reductase; Provisional

Probab=96.06  E-value=0.022  Score=36.39  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+++++|.|+ |.+|..+++.....|++ |++++++
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence            4678999998 99999999888888998 8888765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.06  E-value=0.021  Score=40.39  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+++|+|+|+|+.|+.++..++..|.+ |++++..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            3578999999999999999999999998 8888764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12743 oxidoreductase; Provisional

Probab=96.06  E-value=0.024  Score=36.65  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +++++|.|+ |++|..+++.+...|++ |+.+.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~   34 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWH   34 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            578999998 89999999999999998 766643

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.022  Score=36.56  Aligned_cols=33  Identities=9%  Similarity=0.065  Sum_probs=28.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~-V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTH-VISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCE-EEEEeCCc
Confidence            47999998 99999998888888998 88888776

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.05  E-value=0.023  Score=38.77  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+.+++|+|+|+|+.|+.++..++..|.+ |+++++.+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~   51 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYE-VHVYDKLP   51 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            45678999999999999999998888988 88887654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.05  E-value=0.024  Score=36.68  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ +++|..+++.+...|++ |+++++++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~   42 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAE   42 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCch
Confidence            4789999998 89999999998899998 77776643

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.05  E-value=0.015  Score=39.39  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |+..++.
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~  179 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK  179 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC
Confidence            478999999999999999999999998 8888754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.04  E-value=0.016  Score=44.91  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~-VtV~Ek~~  572 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHP-VTVFEREE  572 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCe-EEEEeccc
Confidence            4578999999999999999999999998 88887543

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=96.04  E-value=0.012  Score=40.22  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=28.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGI   92 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~   92 (100)
                      |+|+|+|+.|++++..+...| .+ |+++++.+.
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~~   34 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKIK-IALIEANSP   34 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCce-EEEEeCCCc
Confidence            899999999999999999999 98 899987654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.04  E-value=0.036  Score=30.28  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=28.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      -.+++++|+|.|.+|..+++.+...+..++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999999999999999999886555776654

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.04  E-value=0.017  Score=40.02  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+|-|+|+|-+|.|+++-++.+|.+ +++.+++++
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~lG~~-v~vLdp~~~   35 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARLGIK-VIVLDPDAD   35 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhcCCE-EEEecCCCC
Confidence            5789999999999999999999999 888887655

>PRK08223 hypothetical protein; Validated

Probab=96.03  E-value=0.019  Score=38.57  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            357899999999999999999999999888887643

>PRK13984 putative oxidoreductase; Provisional

Probab=96.03  E-value=0.019  Score=41.94  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~  316 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLS  316 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            45689999999999999999999999998 88886543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.03  E-value=0.022  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35679999999999999999999999989988876

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.03  E-value=0.016  Score=43.05  Aligned_cols=37  Identities=35%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++..+|+|+|+|+.|++++..++..|.+ |.++++.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~-V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGFD-VLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCCe-EEEEeccc
Confidence            35678899999999999999999999999 99998765

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.025  Score=37.43  Aligned_cols=36  Identities=39%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -.+++++|.|+ +++|..+++.+...|++ |++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCCc
Confidence            35789999998 89999999888889998 77776553

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.02  E-value=0.018  Score=38.77  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         60 VLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        60 vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      |||.|+ |.+|.-+++-....+.++++.+++++.++-.+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l   39 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL   39 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH
Confidence            789998 99999998888888988899999998876544

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=96.02  E-value=0.015  Score=39.91  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|++++..+...|.+ |.++++.+.
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLR-VALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCe-EEEEecCCC
Confidence            3599999999999988888888998 999987655

>TIGR00292 thiazole biosynthesis enzyme

Probab=96.01  E-value=0.018  Score=37.93  Aligned_cols=33  Identities=27%  Similarity=0.523  Sum_probs=28.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -.|+|+|+|+.|+++...+...|.+ |++++++.
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~~-V~vlEk~~   54 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGLK-VCVLERSL   54 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            4599999999999999888889998 88887764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.01  E-value=0.019  Score=38.74  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.+++.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~~  155 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRSY  155 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCC
Confidence            489999999999999999999999998 98888753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.00  E-value=0.026  Score=39.59  Aligned_cols=43  Identities=14%  Similarity=0.067  Sum_probs=37.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ...++++|.|.|.+|..+++.+...|.+ |++++.++++.+.++
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~~~~~~~  271 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPERAEELA  271 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHH
Confidence            3468899999999999999999999998 999999998876553

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.00  E-value=0.023  Score=39.86  Aligned_cols=39  Identities=13%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +++|+|+|.+|..+++.+...|.+ ++++++++++.+.++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~~~~~~~~   40 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTDEERLRRLQ   40 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHH
Confidence            689999999999999999999998 899999888877654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.99  E-value=0.022  Score=33.95  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +|+|+|+|++|..++..+...|.+++..+|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999999889888765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.99  E-value=0.022  Score=37.92  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999998889888754

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.99  E-value=0.023  Score=39.41  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999999889999876

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.024  Score=41.56  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~-V~~~~r~~~~~~~  410 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGAT-VFLVARNGEALDE  410 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            678999998 89999999888888998 9999888876543

>PRK05855 short chain dehydrogenase; Validated

Probab=95.99  E-value=0.025  Score=40.51  Aligned_cols=40  Identities=28%  Similarity=0.184  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+.+++|+|+ |++|..+++-+...|.+ |+.+++++++.+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~~~~~~~  354 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAE-VVASDIDEAAAER  354 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4678999998 99999998888889998 9999888776653

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.98  E-value=0.018  Score=39.08  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++.
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLP  180 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCC
Confidence            478999999999999999999999998 8888754

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.98  E-value=0.016  Score=40.69  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -.|+|+|+|+.|+.+...+...|.+ |+++++.+
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~-V~llEr~~   38 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQ-VLVIERGN   38 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCe-EEEEEcCC
Confidence            4699999999999998888889998 99998754

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.026  Score=36.28  Aligned_cols=38  Identities=21%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICV-CKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~   94 (100)
                      .+++++|.|+ |.+|..+++.+...|.+ |++ ..+++++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~~~~~   44 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRNKQAA   44 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHH
Confidence            3678999998 99999999988888998 655 35655543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=95.98  E-value=0.011  Score=43.54  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~   93 (100)
                      .-.|+|+|+|+.|++++..+.. .|.+ |.++++.++.
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~-v~IiE~~~~~   68 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDIT-TRIVERKPGR   68 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCc-EEEEEcCCCC
Confidence            4569999999999998777777 4999 8889877653

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.98  E-value=0.024  Score=38.03  Aligned_cols=36  Identities=22%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +|+|+|+ |.+|..++..+...|.+ |.++++++++.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R~~~~~~   38 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLVRNLRKAS   38 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCe-EEEEEcChHHhh
Confidence            6999998 99999999998889988 888888766543

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.022  Score=37.35  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |++|..++..+...|++ |++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGAN-IVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecccc
Confidence            4678999998 89999999988888998 888887654

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.97  E-value=0.02  Score=39.05  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      |+++-|+|.|.+|..+++.++.+|.+ |++.++
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~  173 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP  173 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence            88999999999999999999999999 999988

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.97  E-value=0.074  Score=36.22  Aligned_cols=43  Identities=12%  Similarity=0.026  Sum_probs=34.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAK-AYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +..++++|+|+|..+...+..+. ..+.++|.+..++++|.+.+
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~  170 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEAL  170 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence            45678999999999988777766 57888899999998886643

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.96  E-value=0.08  Score=36.10  Aligned_cols=43  Identities=16%  Similarity=0.094  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~   97 (100)
                      +..++++|+|+|..|.+.+..... .+.++|.+.++++++.+.+
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l  173 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAY  173 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            445789999999999887766664 6777799999998887654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.96  E-value=0.012  Score=40.63  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..|+|+|+|+.|++++..+...|.+ |.+++..+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence            3599999999999988888888998 99998765

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.96  E-value=0.018  Score=40.03  Aligned_cols=33  Identities=12%  Similarity=0.137  Sum_probs=28.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~   92 (100)
                      +|+|+|+|+.|+++...++..| .+ |.+.++.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~-v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLN-VQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCC-EEEEecCCc
Confidence            6899999999999999988887 57 999988755

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=95.96  E-value=0.018  Score=37.90  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=28.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..|+|+|+|+.|+.+...+...|.+ |++++.++
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Confidence            4599999999999988888888998 88887654

>PRK08317 hypothetical protein; Provisional

Probab=95.95  E-value=0.042  Score=34.89  Aligned_cols=48  Identities=21%  Similarity=0.138  Sum_probs=38.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~   98 (100)
                      +...+.++++||-+|+|. |..+..+++..+ ..++++++.+++..+.++
T Consensus        13 ~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~   61 (241)
T PRK08317         13 ELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAK   61 (241)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence            567888999999999976 788888888874 234999999988776654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=95.95  E-value=0.019  Score=39.60  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+|+|+||.|++++..+...|.+ |++++..
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIE-TILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence            489999999999998888888999 9999876

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=95.94  E-value=0.019  Score=44.60  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++|+|+|+|+.|+.++..+...|.+ |++++..+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~-VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHP-VTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeccc
Confidence            467899999999999999999999998 88887653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.94  E-value=0.024  Score=40.54  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +.+++|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~-V~v~e~~~  176 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGHT-VTVFERED  176 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEecCC
Confidence            3578999999999999999999999998 88886543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.94  E-value=0.024  Score=35.25  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998898888754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN03139 formate dehydrogenase; Provisional

Probab=95.94  E-value=0.022  Score=39.75  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.+++.
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~  232 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLK  232 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCC
Confidence            578999999999999999999999999 88888764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.94  E-value=0.026  Score=37.54  Aligned_cols=38  Identities=16%  Similarity=0.072  Sum_probs=30.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|+|+|+|.+|......+...|.+ |+.+++ +++.+.++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~-V~~~~r-~~~~~~~~   39 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRD-VTFLVR-PKRAKALR   39 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCc-eEEEec-HHHHHHHH
Confidence            689999999999888887777888 888877 66655443

>KOG0029|consensus

Probab=95.93  E-value=0.02  Score=41.30  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+..+|+|+|+|..|++++.-+...|.+ |++.+.+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~-V~VLEAR   47 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFD-VLVLEAR   47 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCc-eEEEecc
Confidence            3456899999999999999999999999 8888644

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.92  E-value=0.029  Score=35.95  Aligned_cols=37  Identities=24%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~   93 (100)
                      .+++++|.|+ |.+|..++..+...|++ |+.+.+ ++++
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~~~~~~~   42 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNYHQSEDA   42 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEcCCCHHH
Confidence            3578999998 99999999988889998 666543 4443

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.91  E-value=0.023  Score=37.52  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++.++|.|+   +++|..+++.....|++ |+.+++++
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~-Vil~~r~~   41 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAE-LAFTYLNE   41 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEecCH
Confidence            4789999997   48999999988889998 88887774

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.91  E-value=0.028  Score=38.53  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            47799999999999999999999998899998753

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.031  Score=35.19  Aligned_cols=37  Identities=14%  Similarity=0.053  Sum_probs=29.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .++++|.|+ |.+|..++..+... .+ |+++++++++.+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~-V~~~~r~~~~~~   40 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HT-LLLGGRPAERLD   40 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CC-EEEEeCCHHHHH
Confidence            368999998 99999988776666 76 999988877654

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.90  E-value=0.024  Score=35.15  Aligned_cols=32  Identities=25%  Similarity=0.478  Sum_probs=27.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|+|+|+|+.|+.++.-+...+.+ +++++.++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~-v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAK-VLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE-EEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCe-EEEEeccc
Confidence            589999999999999999999999 77775443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.89  E-value=0.029  Score=39.49  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++++++|.|+ |++|..+++.+...|++ |++++++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~~~  243 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAH-VVCLDVP  243 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5789999998 99999999999999998 8887664

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.89  E-value=0.028  Score=38.10  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ..+|.|+|+|.+|......+...|.+ |.+.++++++.+.++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~~~~~~~i~   44 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVP-VRLWARRPEFAAALA   44 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHH
Confidence            34799999999999999888888988 999999887765443

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.88  E-value=0.018  Score=40.87  Aligned_cols=35  Identities=11%  Similarity=0.099  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++|+|+|.|-.|.+++++++. |++ |+++|.+++
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~-v~v~D~~~~   39 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYD-VIVYDDLKA   39 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCE-EEEECCCCC
Confidence            47899999999999999999995 988 999985543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.88  E-value=0.016  Score=39.80  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+|+|+|+.|++++..+...|.+ |.+++..
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIK-TTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCe-EEEecCC
Confidence            489999999999998888889998 8888865

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.032  Score=35.91  Aligned_cols=37  Identities=22%  Similarity=0.119  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++.. +++++
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~   41 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEE   41 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcCCCHHH
Confidence            4789999998 89999999999999998 76653 44443

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=95.87  E-value=0.035  Score=36.00  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE-EEec
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVIC-VCKY   89 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~-~~~~   89 (100)
                      -.+.+++|.|.|.+|..+++++...|++ |+ +.|+
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~-vv~v~D~   63 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGAK-VVAVSDS   63 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            3579999999999999999999999999 66 5544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>KOG1399|consensus

Probab=95.87  E-value=0.016  Score=41.15  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+|.|+|+|+.|+.++.-++..|.+ +++.++++
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~-v~vfEr~~   39 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHE-VVVFERTD   39 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCC-ceEEEecC
Confidence            57799999999999999999999999 88887764

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.87  E-value=0.022  Score=42.22  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +.+|||+|+|++|..+++.+...|.++++.+|.
T Consensus       338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            789999999999999999999999998998875

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.86  E-value=0.035  Score=35.27  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +.++++|.|+ |.+|..++..+...|.+ |+++.++
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~~~~~   39 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGAD-VVVHYRS   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            3578999998 99999999999999998 6654443

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.033  Score=35.56  Aligned_cols=34  Identities=21%  Similarity=0.073  Sum_probs=28.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++++++|.|+ |++|..+++.....|.+ ++.+.++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~   38 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAG   38 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCC
Confidence            5789999998 99999999999999998 6665443

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.86  E-value=0.026  Score=42.41  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+++|+|+|+|+.|+.++..+...|.+ |++++..
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~  463 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL  463 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            4688999999999999999999999998 8888753

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.85  E-value=0.025  Score=40.65  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH--cCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKA--YGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~--~g~~~v~~~~~~~   91 (100)
                      ..+.+|+|+|+||.|+.++..+..  .|.+ |.+++..+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~-Vtv~E~~p   61 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGAR-VDIIERLP   61 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCe-EEEEecCC
Confidence            346789999999999999887764  6888 88887665

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.85  E-value=0.064  Score=37.81  Aligned_cols=64  Identities=22%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             CCCCCChhhhhcchhHHHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCc--EEEEEecC
Q psy16556         27 LPDHLTLEEGALLEPLAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGAR--VICVCKYV   90 (100)
Q Consensus        27 ~p~~~~~~~aa~~~~~~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~--~v~~~~~~   90 (100)
                      +|-.=+..+...+..++..+++++..+ --...+|+++|+|..|..++.+.+..|.+  +++.+|+.
T Consensus       168 IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         168 IPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             CCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            454445556666666666777776544 34567888999999999999999999987  79999864

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.85  E-value=0.028  Score=38.72  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            357899999999999999999999999899887654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.85  E-value=0.035  Score=35.83  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=28.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+.++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~   40 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNS   40 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4689999998 99999999998889998 6665443

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=95.85  E-value=0.067  Score=36.78  Aligned_cols=41  Identities=15%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +--.++++||+|+|-+|..++..+...|.++++++.++.++
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            33468999999999999999999999998878888777543

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.85  E-value=0.074  Score=35.17  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      -+|.+|+|.|.|.+|+.+++++..+|++ |+++
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e~Gak-vvaV   67 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLELGAK-VVTL   67 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE
Confidence            4689999999999999999999999999 7755

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		7e-34
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		8e-31
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		8e-30
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		3e-29
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		3e-14
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-05
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		3e-05
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-04
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		2e-04
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		4e-04
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		4e-04
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		6e-04
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		7e-04
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		8e-04

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 79/88 (89%)
Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL+++Y HAADFC+KLPD+++LEEGALLEPL+VGVHAC+R+GV LGT+V
Sbjct: 113 LTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTV 172
Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCK 88
           LV+ AGPIGLV++LAAKAYGA V+C  +
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAFVVCTAR 200

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 75/100 (75%)
Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL +FYKH A+FCYKLPD++T EEGAL+EPL+VG+HAC+R+GV LG  V
Sbjct: 115 IFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKV 174
Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           LV  AGPIGLV +LAAKA GA  + V      R+   K++
Sbjct: 175 LVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEV 214

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score =  125 bits (313), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 73/100 (73%)
Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  V
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKV 175
Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           LV  AGPIG+VT+L AKA GA  + V      R+   K+I
Sbjct: 176 LVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 215

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 72/100 (72%)
Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  V
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKV 175
Query: 61  LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI 100
           LV  AGPIG VT+L AKA GA  + V      R+   K+I
Sbjct: 176 LVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEI 215

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           F +TPP  G L ++  H A +C+K+  +++ E GA+LEPL+V +   +R+GV LG  VL+
Sbjct: 127 FLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVALAGLQRAGVRLGDPVLI 185
Query: 63  LSAGPIGLVTILAAKAYGA 81
             AGPIGL+T+L AKA GA
Sbjct: 186 CGAGPIGLITMLCAKAAGA 204

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 25  YKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVI 84
           + LP  + +E+GA +EP+ VG+HA   +      +V+++ AG IGL+ I  A A GA+ +
Sbjct: 129 FALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSV 188

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSAGP 67
             G  +++    A+  +  P  L  E  A+LEP    VH     SGV  G SVL+  AGP
Sbjct: 117 RDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVS-GKSVLITGAGP 175
Query: 68  IGLVTILAAKAYGARVICVCK 88
           IGL+  +  +A GA  I V  
Sbjct: 176 IGLMAAMVVRASGAGPILVSD 196

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 27  LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAK-------- 77
           LP  + LE   ++ + +  G H  + + + LG +V VL  GP+GL+ +  AK        
Sbjct: 136 LPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRII 195
Query: 78  AYGARVICV--CKYVG 91
           A G+R +CV   KY G
Sbjct: 196 AVGSRPVCVDAAKYYG 211

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 27  LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAK-------- 77
           LP  + LE   ++ + +  G H  + + + LG +V VL  GP+GL+ +  AK        
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRII 195
Query: 78  AYGARVICV--CKYVG 91
           A G+R +CV   KY G
Sbjct: 196 AVGSRPVCVDAAKYYG 211

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 10  HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVH-ACKRSGVGLGTSVLVLSAGPI 68
            G  +++ + AAD+  K+PD+L+ EE A +    V  + A K +G   G  V +   G +
Sbjct: 117 DGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGL 176
Query: 69  GLVTILAAKAYGARVICV 86
           G V +  AKA G  V+ V
Sbjct: 177 GHVAVQYAKAMGLNVVAV 194

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 16  FYKHAADFCYK-LPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTI 73
           F+ + AD     LP  + LE   ++ + +  G H  + + + LG +V VL  GP+GL+ +
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAV 183
Query: 74  LAAK--------AYGARVICV--CKYVG-IRIFPYKK 99
             AK        A G+R +CV   KY G   I  YK 
Sbjct: 184 AGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKD 220

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPI 68
             G  +++        +++P  L    GA  EPLA  +H    SG+  G++V +L  G I
Sbjct: 135 RDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVI 194
Query: 69  GLVTILAAKAYGARVI 84
           GL+T+  A+  GA  +
Sbjct: 195 GLLTVQLARLAGATTV 210

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 10  HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVH-ACKRSGVGLGTSVLVLSAGPI 68
            G  +++ + AAD+  K+PD+L+ EE A +    V  + A K +G   G  V +   G  
Sbjct: 117 DGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGF 176
Query: 69  GLVTILAAKAYGARVICV 86
           G V +  AKA G  V+ V
Sbjct: 177 GHVAVQYAKAMGLNVVAV 194

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 21  ADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG 80
           A   +K P  +  E  AL EPL   V     +G   G S L+  AGP+GL+ I  AKA G
Sbjct: 133 AKNAWKNPKDMPPEYAALQEPLGNAVDTV-LAGPIAGRSTLITGAGPLGLLGIAVAKASG 191
Query: 81  ARVICVCKYVGIRIFPYKKI 100
           A  + V +    R    KK+
Sbjct: 192 AYPVIVSEPSEFRRKLAKKV 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	2e-42
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-42
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	4e-39
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	4e-37
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	8e-36
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	5e-34
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	6e-31
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-28
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-24
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	7e-24
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	9e-12
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-11
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-09
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	4e-09
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-08
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-08
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	6e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-07
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	3e-07
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	4e-07
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-06
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-06
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	6e-06
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-05
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-05
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-05
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-05
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	5e-05
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	7e-05
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-04
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-04
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	3e-04
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	4e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	6e-04

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  140 bits (356), Expect = 2e-42
 Identities = 62/86 (72%), Positives = 78/86 (90%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL+++Y HAADFC+KLPD+++LEEGALLEPL+VGVHAC+R+GV LGT+V
Sbjct: 113 LTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTV 172

Query: 61  LVLSAGPIGLVTILAAKAYGARVICV 86
           LV+ AGPIGLV++LAAKAYGA V+C 
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAFVVCT 198

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  140 bits (355), Expect = 2e-42
 Identities = 57/87 (65%), Positives = 68/87 (78%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL +FYKH A FCYKLPD++T EEGAL+EPL+VG+HAC+R GV LG  V
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKV 175

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVC 87
           LV  AGPIG+VT+L AKA GA  + V 
Sbjct: 176 LVCGAGPIGMVTLLVAKAMGAAQVVVT 202

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  132 bits (334), Expect = 4e-39
 Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 1/87 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + F +TPP  G L ++  H A +C+K+ + ++ E GA+LEPL+V +   +R+GV LG  V
Sbjct: 125 VDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPV 183

Query: 61  LVLSAGPIGLVTILAAKAYGARVICVC 87
           L+  AGPIGL+T+L AKA GA  + + 
Sbjct: 184 LICGAGPIGLITMLCAKAAGACPLVIT 210

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  126 bits (319), Expect = 4e-37
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
                     G  +++    A+  +  P  L  E  A+LEP    VH         G SV
Sbjct: 110 TQILGVDRD-GGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSV 168

Query: 61  LVLSAGPIGLVTILAAKAYGARVICV 86
           L+  AGPIGL+  +  +A GA  I V
Sbjct: 169 LITGAGPIGLMAAMVVRASGAGPILV 194

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  123 bits (310), Expect = 8e-36
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
             F  +    G  +++        + LP  + +E+GA +EP+ VG+HA   +      +V
Sbjct: 106 YDFIGSRRD-GGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNV 164

Query: 61  LVLSAGPIGLVTILAAKAYGARVICV 86
           +++ AG IGL+ I  A A GA+ +  
Sbjct: 165 IIIGAGTIGLLAIQCAVALGAKSVTA 190

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  119 bits (300), Expect = 5e-34
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           +         G  +++        +++P  L    GA  EPLA  +H    SG+  G++V
Sbjct: 128 LRAIGIHRD-GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTV 186

Query: 61  LVLSAGPIGLVTILAAKAYGARVICV 86
            +L  G IGL+T+  A+  GA  + +
Sbjct: 187 AILGGGVIGLLTVQLARLAGATTVIL 212

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  110 bits (278), Expect = 6e-31
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
                     G  +++    A   +K P  +  E   L EPL   V       +  G SV
Sbjct: 114 TKIFGVDTD-GVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI-SGKSV 171

Query: 61  LVLSAGPIGLVTILAAKAYGARVICV 86
           L+  AGP+GL+ I  AKA GA  + V
Sbjct: 172 LITGAGPLGLLGIAVAKASGAYPVIV 197

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  103 bits (259), Expect = 3e-28
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 1   MVFCAT--PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGT 58
            ++        HG +S+F+     +  ++P     E G L+EP+++   A + +      
Sbjct: 110 GMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSA 168

Query: 59  ------SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK 98
                 S  VL  G +GL+T+   K        +            
Sbjct: 169 FDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPT 214

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDH-------LTLEEGALLEPLAVGVHAC--KR 51
           +         G  +++ K  A + + L +             G+L+EP +V  +A   + 
Sbjct: 150 LNELGFN-VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRG 208

Query: 52  SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
            G+  G +V++L  GPIGL  +   K  GA  + +
Sbjct: 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 92.1 bits (229), Expect = 7e-24
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 4   CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKR------------ 51
                  G + +++     +  K+P  +  + G L +PLA    + +             
Sbjct: 115 AGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWT 173

Query: 52  --SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV 86
              G      VLV+  GPIG++  L  + YG  V   
Sbjct: 174 CDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMA 210

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 58.4 bits (142), Expect = 9e-12
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 19  HAADFCYKLPDHLTLEEGALLEP-LAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAA 76
                  K+ +   L+  A+     A   HA         G +V++  AGP+GL  ++ A
Sbjct: 156 DPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIA 215

Query: 77  KAYGARVICVCKYVGIRIFPYK 98
           ++ GA  +     + I   P +
Sbjct: 216 RSLGAENV-----IVIAGSPNR 232

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 57.2 bits (139), Expect = 2e-11
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 21  ADF-CYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKA 78
           AD     LP  + LE   ++ + +  G H  + + + LG +V V+  GP+GL+++  A  
Sbjct: 129 ADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANH 188

Query: 79  YGA-RVICV 86
            GA R+  V
Sbjct: 189 LGAGRIFAV 197

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 8   PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HA-CKRSGVGLGTSVLVLS 64
            H G LS++      +    P  L   E + L P A      A  ++  +  G  V+V  
Sbjct: 139 AHPGVLSEYVVLPEGWFVAAPKSLDAAEASTL-PCAGLTAWFALVEKGHLRAGDRVVVQG 197

Query: 65  AGPIGLVTILAAKAYGARVI 84
            G + L  +  AKA GA VI
Sbjct: 198 TGGVALFGLQIAKATGAEVI 217

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 50.7 bits (122), Expect = 4e-09
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 21  ADF-CYKLPDHLTLEEG-----ALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTIL 74
           ADF   KLPD     E       L + L  G H    +GVG G++V V  AGP+GL    
Sbjct: 144 ADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAA 203

Query: 75  AAKAYGA-RVICV 86
           +A+  GA  VI  
Sbjct: 204 SARLLGAAVVIVG 216

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 7   PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-----VHACKRSGVGLGTSVL 61
             + G L++     ++     PDHL+ EE A    L        + +   +G+  G +VL
Sbjct: 175 ETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAP-GLVNSTAYRQLVSRNGAGMKQGDNVL 233

Query: 62  VLSA-GPIGLVTILAAKAYGARVICV 86
           +  A G +G      A A GA  ICV
Sbjct: 234 IWGASGGLGSYATQFALAGGANPICV 259

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 21  ADF-CYKLPDHLT---LEEGALL--EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTIL 74
           AD+   K  D        +   L  + L  G H C  +GV  G+ V +  AGP+G     
Sbjct: 144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAA 203

Query: 75  AAKAYGA-RVICV 86
            A+  GA  VI  
Sbjct: 204 GARLLGAACVIVG 216

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 7   PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-----VHACKRSGVGLGTSVL 61
             + G L+++    A      P HLT EE A+  PL  G     + + + + +  G  VL
Sbjct: 167 ETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVS-PLCAGTAYRMLVSDRGAQMKQGDIVL 225

Query: 62  VLSA-GPIGLVTILAAKAYGARVICV 86
           +  A G +G   I   K  G   + V
Sbjct: 226 IWGASGGLGSYAIQFVKNGGGIPVAV 251

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 4   CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTSVLV 62
            A  P  G L++           LP+ L+ EE A           A KR+    G  VLV
Sbjct: 73  AALVPQ-GGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLV 131

Query: 63  L-SAGPIGLVTILAAKAYGARVICVC 87
             +AG +G   +  A+A G RV+   
Sbjct: 132 QAAAGALGTAAVQVARAMGLRVLAAA 157

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 8   PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV--HA-CKRSGVGLGTSVLVL- 63
             HG  +++           P +L+ EE A + PL           + GV  G  VLV+ 
Sbjct: 116 HRHGTYAEYVVLPEANLAPKPKNLSFEEAAAI-PLTFLTAWQMVVDKLGVRPGDDVLVMA 174

Query: 64  SAGPIGLVTILAAKAYGARVI 84
           +   + +  I  AK +GARVI
Sbjct: 175 AGSGVSVAAIQIAKLFGARVI 195

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 2   VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGT 58
           VF ++    G  +++   A    YKLP+ L  ++GA +  +     +      + V  G 
Sbjct: 115 VFTSSTIS-GGYAEYALAADHTVYKLPEKLDFKQGAAI-GIPYFTAYRALIHSACVKAGE 172

Query: 59  SVLVL-SAGPIGLVTILAAKAYGARVI 84
           SVLV  ++G +GL     A+AYG +++
Sbjct: 173 SVLVHGASGGVGLAACQIARAYGLKIL 199

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 4   CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV------HACKRSG-VGL 56
                  G        + +   ++P  + L+  A      +GV              +  
Sbjct: 113 IPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA-----TLGVNPCTAYRMLMDFEQLQP 167

Query: 57  GTSVLVLSA-GPIGLVTILAAKAYGARVICV 86
           G SV+  ++   +G   I  A A G R I V
Sbjct: 168 GDSVIQNASNSGVGQAVIQIAAALGLRTINV 198

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGTSVLVL-SAGPIGLVTILAA 76
                  P  L   E   L       ++    +R  +  G +VLVL +AG IG   I  A
Sbjct: 122 PSNILPTPPQLDDAEAVAL-IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIA 180

Query: 77  KAYGARVICV 86
           K  GA+VI V
Sbjct: 181 KGMGAKVIAV 190

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 8   PHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAV---------------GVHACKRS 52
           P  G  SQ+         K+P  L+ E+ A L P  +                  A +  
Sbjct: 102 PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAAL-PAGISTAGLAMKLLGLPLPSPSADQPP 160

Query: 53  GVGLGTSVLVLS-AGPIGLVTILAAKAYGARVICVC 87
                  VLV   +     VT+   +  G   I  C
Sbjct: 161 THSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC 196

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 21  ADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTSVLVL-SAGPIGLVTILAAKA 78
           A  C  L D +  E+GA ++      +            + ++   A  +  + I  AK 
Sbjct: 128 AAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKE 187

Query: 79  YGARVI 84
            G R I
Sbjct: 188 EGFRPI 193

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVG-VHAC--KRSGVGLGTSVLVLS-AGPIGLVTILAA 76
            +F YK+PD ++  E A   P+     +    + + +  G SVLV S  G +G       
Sbjct: 105 VEFVYKIPDDMSFSEAAAF-PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLC 163

Query: 77  KAYGARVI 84
                  +
Sbjct: 164 STVPNVTV 171

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLA-VGV---HACKRSGVGLGTSVLVLS 64
             G  +++              L   E A   PL   G+    A +++ +    ++LV+ 
Sbjct: 122 FDGAYAEYVIVPHYKYMYKLRRLNAVEAA---PLTCSGITTYRAVRKASLDPTKTLLVVG 178

Query: 65  A-GPIGLVTILAAKA-YGARVICV 86
           A G +G + +  AKA  GA +I V
Sbjct: 179 AGGGLGTMAVQIAKAVSGATIIGV 202

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 21  ADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSG-VGLGTSVLVL-SAGPIGLVTILAAK 77
           ADF   +PD +     A +          C  +  +     +LV      IG +    ++
Sbjct: 107 ADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQ 166

Query: 78  AYGARVICV 86
               R+I V
Sbjct: 167 ILNFRLIAV 175

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 2   VFCATPPHH-GNLSQFYKHAADFCYKLPDHLTLEEGALLEPL-------AVGVHACKRSG 53
           V+ A PP   G LS+F   + +     P  LT  + A L P        A+         
Sbjct: 122 VWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL-PYVALTAWSAINKVGGLNDK 180

Query: 54  VGLGTSVLVL-SAGPIGLVTILAAKAYGARVICVC 87
              G  VL+L ++G +G   I   KA+ A V  VC
Sbjct: 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC 215

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 38.8 bits (90), Expect = 7e-05
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 21  ADFCYKLPDHLTLEEGA--LLEPLAVGVHACKRSGVGLGTSVLVL-SAGPIGLVTILAAK 77
           AD C  LP+  T  +GA   + PL   +   +   +   ++++   +A  +G +      
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLTA-LGMVETMRLEGHSALVHTAAASNLGQMLNQICL 193

Query: 78  AYGARVICVC 87
             G +++ + 
Sbjct: 194 KDGIKLVNIV 203

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLA-VGV---HACKRSGVGL--GTSVLV 62
             G  ++F + +     KLP  ++ E+   + PLA  G+    A K++   L  G  V +
Sbjct: 133 IDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAI 192

Query: 63  LSAGPIGLVTILAAKAYG-ARVICV 86
           +  G +G + +   K    A VI +
Sbjct: 193 VGVGGLGHIAVQLLKVMTPATVIAL 217

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 3   FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVG--VHACKRSGVGLGTSV 60
               P H    +++   + D   +  + L+  + A L P A    + A  ++ V  G  V
Sbjct: 98  IAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASL-PTAGLTALQALNQAEVKQGDVV 156

Query: 61  LVL-SAGPIGLVTILAAKAYGARVICVC 87
           L+   AG +G + I  AK  G  VI   
Sbjct: 157 LIHAGAGGVGHLAIQLAKQKGTTVITTA 184

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 21 ADFCYKLPDHLTLEEGALLEPLAVG--VHA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
          +D    +PD L   E A    +A     H+ C+   +  G  VL+ SA G +G+  +  A
Sbjct: 1  SDLVVPIPDTLADNEAATF-GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA 59

Query: 77 KAYGARVIC 85
          K  GAR+  
Sbjct: 60 KMIGARIYT 68

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 21  ADFCYKLPDHLTLEEGALLEPLAVG--VHA-CKRSGVGLGTSVLVLSA-GPIGLVTILAA 76
                ++P   +    A + P+      +A    +G+  G S+LV SA G +G+  I  A
Sbjct: 308 HRMVTRIPAGWSFARAASV-PIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLA 366

Query: 77  KAYGARVICVC 87
           +  GA V    
Sbjct: 367 RHLGAEVYATA 377

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 36.3 bits (83), Expect = 6e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 57  GTSVLVLSAGPIGLVTILAAKAYGARVICV 86
           G   + +  GP+ L  IL +  YG RV  V
Sbjct: 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVV 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.91
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.91
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.9
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.9
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.9
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.9
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.89
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.89
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.89
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.89
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.89
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.88
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.88
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.88
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.88
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.88
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.88
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.88
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.88
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.88
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.88
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.88
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.88
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.88
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.88
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.87
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.87
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.87
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.87
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.87
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.87
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.87
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.87
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.87
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.86
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.86
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.86
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.86
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.86
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.86
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.86
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.86
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.86
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.86
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.86
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.85
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.85
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.85
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.84
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.84
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.84
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.84
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.84
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.84
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.84
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.84
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.84
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.84
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.84
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.83
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.83
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.83
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.82
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.81
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.81
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.8
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.79
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.78
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.78
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.76
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.68
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.4
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.31
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.26
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.26
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.2
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.19
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.18
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.17
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.08
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.91
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.87
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.87
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.87
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.85
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.82
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.81
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.81
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.73
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.73
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.7
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.67
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.62
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.61
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.61
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.61
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.6
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.55
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.55
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.54
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.52
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.5
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.49
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.48
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.48
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.47
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.47
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.47
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.46
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.46
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.46
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.46
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.46
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.45
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.44
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.44
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.44
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.44
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.44
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.44
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.43
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.43
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.42
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.42
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.41
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.41
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.41
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.4
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.4
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.4
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.4
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.4
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.4
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.4
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.39
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.39
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.39
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.39
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.39
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.39
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.38
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.38
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.38
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.38
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.37
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.37
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.37
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.36
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.36
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.36
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.36
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.36
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.36
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.36
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.35
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.35
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.34
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.34
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.34
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.34
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.34
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.34
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.33
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.33
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.32
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.32
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.32
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.32
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.32
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.32
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.32
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.32
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.31
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.31
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.31
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.31
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.31
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.31
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.3
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.3
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.29
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.29
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.29
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.29
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.29
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.28
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.28
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.28
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.27
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.26
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.26
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.26
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.26
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.26
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.26
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.25
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.25
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.25
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.25
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.24
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.24
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.24
1spx_A	278	Short-chain reductase family member (5L265); paral	97.24
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.23
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.23
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.23
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.23
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.23
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.22
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.22
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.22
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.22
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.21
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.21
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.21
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.2
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.2
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.19
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.19
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.19
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.19
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.19
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.19
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.18
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.18
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.18
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.17
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.16
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.16
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.14
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.14
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.14
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.13
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.13
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.12
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.12
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.12
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.12
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.11
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.08
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.08
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.08
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.08
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.07
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.07
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.07
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.07
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.06
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.06
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.05
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.05
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.04
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.03
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.03
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.02
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.02
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.01
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.01
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.0
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.0
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.99
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.99
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.98
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.98
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.98
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.98
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.97
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.97
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.97
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.97
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.97
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.97
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.96
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.96
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.95
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.95
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.94
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.94
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.94
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.94
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.93
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.93
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.93
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.93
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.93
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.92
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.92
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.92
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.92
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.92
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.91
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.91
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.9
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.9
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.9
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.9
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.9
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.9
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.89
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.89
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.88
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.88
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.88
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.88
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.88
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.87
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.87
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.86
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.86
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.85
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.85
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.83
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.83
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.82
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.82
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.81
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.81
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.81
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.8
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.79
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.79
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.79
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.78
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.78
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.78
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.78
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.77
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.77
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.77
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.77
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.77
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.77
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.77
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.76
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.76
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.75
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.75
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.74
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.74
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.73
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.73
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.72
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.72
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.7
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.7
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.69
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.69
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.68
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.67
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.67
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.66
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.66
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.66
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.65
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.65
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.65
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.64
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.64
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.64
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.64
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.63
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.63
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.63
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.62
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.61
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.61
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.61
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.61
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.6
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.6
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.6
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.6
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.59
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.59
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.59
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.58
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.58
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.57
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.57
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.57
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.57
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.56
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.56
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.55
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.54
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.54
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.54
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.54
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.54
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.53
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.52
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.52
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.51
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.5
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.5
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.5
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.5
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.5
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.49
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.49
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.49
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.49
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.49
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.48
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.48
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.48
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.47
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.47
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.46
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.46
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.46
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.45
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.45
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.45
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.44
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.44
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.44
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.44
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.44
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.43
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.43
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.42
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.42
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.41
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.4
3on5_A	362	BH1974 protein; structural genomics, joint center	96.4
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.4
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.4
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.4
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.39
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.39
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.38
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.38
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.38
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.38
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.37
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.37
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.37
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.37
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.37
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.35
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.33
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.33
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.33
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.33
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.32
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.32
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.32
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.32
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.32
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.31
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.31
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.3
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.3
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.3
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.3
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.3
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.29
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.29
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.29
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.28
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.28
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.28
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.27
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.26
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.26
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.26
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.25
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.25
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.25
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.24
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.23
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.23
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.22
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.22
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.21
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.21
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.2
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.2
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.19
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.19
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	96.19
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.18
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.18
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.17
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.17
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.17
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.17
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.16
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.16
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.16
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.16
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.15
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.15
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.14

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.91  E-value=6.5e-24  Score=142.52  Aligned_cols=93  Identities=42%  Similarity=0.684  Sum_probs=86.9

Q ss_pred             CCCCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          7 PPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         7 ~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+.+|+|+||+++|++.++++|+ +++++|++++++.|||++++..++++|++|||+|+|++|++++|++|.+|+++|++
T Consensus       131 ~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  209 (363)
T 3m6i_A          131 PPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVI  209 (363)
T ss_dssp             TTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHHHHHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCccceeEEEEehhhEEECCC-CCHHHHHhhhHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            34579999999999999999999 99999998889999999999899999999999999999999999999999987999


Q ss_pred             EecChhhhhhhhcC
Q psy16556         87 CKYVGIRIFPYKKI  100 (100)
Q Consensus        87 ~~~~~~~~~~~~~l  100 (100)
                      ++++++|+++++++
T Consensus       210 ~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          210 TDIDEGRLKFAKEI  223 (363)
T ss_dssp             EESCHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHh
Confidence            99999999988763

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.91  E-value=1.9e-23  Score=140.13  Aligned_cols=92  Identities=59%  Similarity=1.007  Sum_probs=86.3

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+|+|+||+++|++.++++|+++++++|++++++.|+|++++..++++|++|||+|+|++|++++|+++.+|+++|++++
T Consensus       124 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  203 (356)
T 1pl8_A          124 DDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD  203 (356)
T ss_dssp             BCCSCBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCccccEEEeehHHEEECcCCCCHHHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            47999999999999999999999999999888999999999889999999999999999999999999999995599999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       204 ~~~~~~~~a~~l  215 (356)
T 1pl8_A          204 LSATRLSKAKEI  215 (356)
T ss_dssp             SCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHh
Confidence            999999988764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.90  E-value=3.9e-23  Score=138.33  Aligned_cols=91  Identities=62%  Similarity=1.002  Sum_probs=86.0

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+|+|+||+++|++.++++|+++++++|++++++.|||++++..++++|++|||+|+|++|++++|+++.+|++ |++++
T Consensus       121 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~  199 (352)
T 1e3j_A          121 DDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTA  199 (352)
T ss_dssp             BCCSCBSEEEEEGGGEEECCTTSCHHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCccceeEEEeChHHeEECcCCCCHHHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEc
Confidence            47999999999999999999999999999888999999999889999999999999999999999999999999 99999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       200 ~~~~~~~~~~~l  211 (352)
T 1e3j_A          200 RSPRRLEVAKNC  211 (352)
T ss_dssp             SCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHh
Confidence            999999988764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.90  E-value=2.6e-23  Score=137.34  Aligned_cols=90  Identities=21%  Similarity=0.277  Sum_probs=84.5

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ +++.|||++++..++++|++|||+|+|++|++++|+++.+|++ |+++
T Consensus        94 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~-Vi~~  172 (315)
T 3goh_A           94 RHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYV-VDLV  172 (315)
T ss_dssp             SCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             CCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEE
Confidence            3799999999999999999999999999877 9999999999888999999999999999999999999999996 9999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      + +++|+++++++
T Consensus       173 ~-~~~~~~~~~~l  184 (315)
T 3goh_A          173 S-ASLSQALAAKR  184 (315)
T ss_dssp             C-SSCCHHHHHHH
T ss_pred             E-ChhhHHHHHHc
Confidence            8 99999988763

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.90  E-value=6.4e-23  Score=136.68  Aligned_cols=91  Identities=18%  Similarity=0.246  Sum_probs=86.0

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .+|+|+||+++|++.++++|+++++++++.+ +++.|+|++++..++++|++|||+|+|++|++++|+++.+|++ |+++
T Consensus       118 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~  196 (340)
T 3s2e_A          118 VNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLR-VAAV  196 (340)
T ss_dssp             BCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCE-EEEE
T ss_pred             CCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEE
Confidence            3799999999999999999999999999977 8999999999888999999999999999999999999999996 9999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       197 ~~~~~~~~~~~~l  209 (340)
T 3s2e_A          197 DIDDAKLNLARRL  209 (340)
T ss_dssp             ESCHHHHHHHHHT
T ss_pred             eCCHHHHHHHHHc
Confidence            9999999998764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.90  E-value=1.3e-22  Score=135.27  Aligned_cols=92  Identities=26%  Similarity=0.489  Sum_probs=86.3

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+|+|+||+++|++.++++|+++++++|+++.++++++++.+..++++|++|+|+|+|++|++++|+++.+|++.+++++
T Consensus       113 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~  192 (346)
T 4a2c_A          113 RDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAID  192 (346)
T ss_dssp             BCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHHHHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCcccccccccchheEEECCCCCCHHHHHhchHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEe
Confidence            37999999999999999999999999999888888888888999999999999999999999999999999999788999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       193 ~~~~k~~~a~~l  204 (346)
T 4a2c_A          193 ISSEKLALAKSF  204 (346)
T ss_dssp             SCHHHHHHHHHT
T ss_pred             chHHHHHHHHHc
Confidence            999999998875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.89  E-value=6.9e-23  Score=138.14  Aligned_cols=91  Identities=25%  Similarity=0.421  Sum_probs=85.9

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+|+|+||+++|++.++++|+++++++|++.+++.++|++++..++++|++|||+|+|++|++++|+++.+|+++|++++
T Consensus       135 ~~G~~aey~~v~~~~~~~~P~~~~~~~aal~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  214 (370)
T 4ej6_A          135 RDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILST  214 (370)
T ss_dssp             BCCSSBSEEEEEGGGEEEECTTSCTTGGGGHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCcceEEEEEchhhEEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            47999999999999999999999999999669999999999999999999999999999999999999999996699999


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      ++++|++++++
T Consensus       215 ~~~~~~~~a~~  225 (370)
T 4ej6_A          215 RQATKRRLAEE  225 (370)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999998875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.89  E-value=9.2e-23  Score=136.36  Aligned_cols=89  Identities=22%  Similarity=0.144  Sum_probs=84.8

Q ss_pred             CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      |+|+||+++|++.++++|+++++++|+.+ +++.|||++++..++++|++|||+|+|++|++++|+++.+|++ |+++++
T Consensus       130 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~  208 (348)
T 3two_A          130 GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE-VSVFAR  208 (348)
T ss_dssp             CSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             ccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeC
Confidence            99999999999999999999999999977 8899999999888999999999999999999999999999997 999999


Q ss_pred             ChhhhhhhhcC
Q psy16556         90 VGIRIFPYKKI  100 (100)
Q Consensus        90 ~~~~~~~~~~l  100 (100)
                      +++|+++++++
T Consensus       209 ~~~~~~~~~~l  219 (348)
T 3two_A          209 NEHKKQDALSM  219 (348)
T ss_dssp             SSTTHHHHHHT
T ss_pred             CHHHHHHHHhc
Confidence            99999998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.89  E-value=1.5e-22  Score=136.43  Aligned_cols=91  Identities=23%  Similarity=0.279  Sum_probs=85.1

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++|+++ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       147 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  226 (376)
T 1e3i_A          147 VSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAI  226 (376)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            499999999999999999999999999988 7899999998 77899999999999999999999999999999659999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       227 ~~~~~~~~~a~~l  239 (376)
T 1e3i_A          227 DINGEKFPKAKAL  239 (376)
T ss_dssp             CSCGGGHHHHHHT
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999988764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.89  E-value=1e-22  Score=137.43  Aligned_cols=90  Identities=23%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             CcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      |+|+||+++|++.++++|+++++++|+++ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|++++
T Consensus       146 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~  225 (378)
T 3uko_A          146 STFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGID  225 (378)
T ss_dssp             CCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             cceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            79999999999999999999999999998 7999999998 788999999999999999999999999999995599999


Q ss_pred             cChhhhhhhhcC
Q psy16556         89 YVGIRIFPYKKI  100 (100)
Q Consensus        89 ~~~~~~~~~~~l  100 (100)
                      ++++|+++++++
T Consensus       226 ~~~~~~~~a~~l  237 (378)
T 3uko_A          226 IDSKKYETAKKF  237 (378)
T ss_dssp             SCTTHHHHHHTT
T ss_pred             CCHHHHHHHHHc
Confidence            999999998864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=2.5e-22  Score=134.88  Aligned_cols=91  Identities=16%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhh---cc-hhHHHHHHHHHh--cCCCCCCEEEEEcCCHHHHHHHHHHHHc-CC
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGA---LL-EPLAVGVHACKR--SGVGLGTSVLVLSAGPIGLVTILAAKAY-GA   81 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa---~~-~~~~ta~~~~~~--~~~~~g~~vli~G~G~~G~~~~~l~~~~-g~   81 (100)
                      .+|+|+||+++|++.++++|+++++++|+   .+ +++.|||++++.  .++++|++|||+|+|++|++++|+++.+ |+
T Consensus       133 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga  212 (359)
T 1h2b_A          133 IDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA  212 (359)
T ss_dssp             BCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC
T ss_pred             CCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            36999999999999999999999999998   45 678899999966  8999999999999999999999999999 99


Q ss_pred             cEEEEEecChhhhhhhhcC
Q psy16556         82 RVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~l  100 (100)
                      + |++++++++|+++++++
T Consensus       213 ~-Vi~~~~~~~~~~~~~~l  230 (359)
T 1h2b_A          213 T-VIALDVKEEKLKLAERL  230 (359)
T ss_dssp             E-EEEEESSHHHHHHHHHT
T ss_pred             e-EEEEeCCHHHHHHHHHh
Confidence            7 99999999999998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=3.1e-22  Score=134.86  Aligned_cols=91  Identities=20%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++|+++ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       144 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  223 (374)
T 1cdo_A          144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAV  223 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            499999999999999999999999999988 7899999998 77899999999999999999999999999999559999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       224 ~~~~~~~~~~~~l  236 (374)
T 1cdo_A          224 DLNPDKFEKAKVF  236 (374)
T ss_dssp             CSCGGGHHHHHHT
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999988764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.88  E-value=3.3e-22  Score=134.74  Aligned_cols=91  Identities=23%  Similarity=0.242  Sum_probs=85.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++|+++ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       143 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  222 (374)
T 2jhf_A          143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGV  222 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            499999999999999999999999999988 7899999998 67899999999999999999999999999999559999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       223 ~~~~~~~~~~~~l  235 (374)
T 2jhf_A          223 DINKDKFAKAKEV  235 (374)
T ss_dssp             CSCGGGHHHHHHT
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999988764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.88  E-value=3.3e-22  Score=134.70  Aligned_cols=90  Identities=21%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|++++++ |+++ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       144 ~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  222 (373)
T 1p0f_A          144 TSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGV  222 (373)
T ss_dssp             TCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            4999999999999999999999999 8888 7899999988 77899999999999999999999999999999659999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       223 ~~~~~~~~~a~~l  235 (373)
T 1p0f_A          223 GTHKDKFPKAIEL  235 (373)
T ss_dssp             CSCGGGHHHHHHT
T ss_pred             CCCHHHHHHHHHc
Confidence            9999999988764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.88  E-value=2.6e-22  Score=135.11  Aligned_cols=90  Identities=21%  Similarity=0.223  Sum_probs=84.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++|+++ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~  221 (373)
T 2fzw_A          142 TSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV  221 (373)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            599999999999999999999999999988 7899999998 77899999999999999999999999999999559999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|++++++
T Consensus       222 ~~~~~~~~~~~~  233 (373)
T 2fzw_A          222 DINKDKFARAKE  233 (373)
T ss_dssp             CSCGGGHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            999999998875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.88  E-value=2.5e-22  Score=134.80  Aligned_cols=90  Identities=22%  Similarity=0.260  Sum_probs=84.6

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ +++.|||++++..++++|++|||+|+|++|++++|+++.+|++ |+++
T Consensus       131 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~-Vi~~  209 (360)
T 1piw_A          131 SQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVI  209 (360)
T ss_dssp             CCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             CCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE
Confidence            3699999999999999999999999999877 8899999999778999999999999999999999999999998 9999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|++++++
T Consensus       210 ~~~~~~~~~~~~  221 (360)
T 1piw_A          210 SRSSRKREDAMK  221 (360)
T ss_dssp             ESSSTTHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            999999988865

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.88  E-value=1.2e-22  Score=135.96  Aligned_cols=92  Identities=22%  Similarity=0.380  Sum_probs=85.7

Q ss_pred             CCCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556          9 HHGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         9 ~~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .+|+|+||+++|++  .++++|+++++++|+++ +++.|||++++..++++|++|||+|+|++|++++|+++.+|+++|+
T Consensus       116 ~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi  195 (352)
T 3fpc_A          116 KDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIF  195 (352)
T ss_dssp             BCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEE
T ss_pred             CCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            47999999999976  89999999999999988 8999999999999999999999999999999999999999995599


Q ss_pred             EEecChhhhhhhhcC
Q psy16556         86 VCKYVGIRIFPYKKI  100 (100)
Q Consensus        86 ~~~~~~~~~~~~~~l  100 (100)
                      +++++++|+++++++
T Consensus       196 ~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          196 AVGSRKHCCDIALEY  210 (352)
T ss_dssp             EECCCHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHh
Confidence            999999999988753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.88  E-value=2.5e-22  Score=135.05  Aligned_cols=90  Identities=22%  Similarity=0.239  Sum_probs=85.1

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|++ |++
T Consensus       140 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~-Vi~  218 (363)
T 3uog_A          140 HPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAE-VIV  218 (363)
T ss_dssp             SCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCE-EEE
T ss_pred             CCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEE
Confidence            3699999999999999999999999999988 8899999999 789999999999999999999999999999997 999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++++++|++++++
T Consensus       219 ~~~~~~~~~~~~~  231 (363)
T 3uog_A          219 TSSSREKLDRAFA  231 (363)
T ss_dssp             EESCHHHHHHHHH
T ss_pred             EecCchhHHHHHH
Confidence            9999999998875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=3e-22  Score=134.79  Aligned_cols=90  Identities=24%  Similarity=0.330  Sum_probs=84.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+++++++|+.+ +++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+++|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~  221 (371)
T 1f8f_A          142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV  221 (371)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            589999999999999999999999999988 7999999999 78899999999999999999999999999999669999


Q ss_pred             ecChhhhhhhhc
Q psy16556         88 KYVGIRIFPYKK   99 (100)
Q Consensus        88 ~~~~~~~~~~~~   99 (100)
                      +++++|++++++
T Consensus       222 ~~~~~~~~~a~~  233 (371)
T 1f8f_A          222 DIVESRLELAKQ  233 (371)
T ss_dssp             ESCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            999999998875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=6.3e-22  Score=133.79  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             CCCcccceEEe-cCCceEECCCCCChh-hhhcchhHHHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556          9 HHGNLSQFYKH-AADFCYKLPDHLTLE-EGALLEPLAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         9 ~~G~~ae~~~~-~~~~~~~~p~~~~~~-~aa~~~~~~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .+|+|+||+++ |++.++++|++++++ +|++++++.|||++++..+ +++|++|||+|+|++|++++|+++.+|+.+|+
T Consensus       145 ~~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi  224 (380)
T 1vj0_A          145 LRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVI  224 (380)
T ss_dssp             CCSSSBSEEEECTTCCEEEECTTSCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEE
T ss_pred             CCccccceEEEcccceEEECCCCCChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEE
Confidence            36999999999 999999999999999 7887799999999998888 99999999999999999999999999963499


Q ss_pred             EEecChhhhhhhhcC
Q psy16556         86 VCKYVGIRIFPYKKI  100 (100)
Q Consensus        86 ~~~~~~~~~~~~~~l  100 (100)
                      +++++++|+++++++
T Consensus       225 ~~~~~~~~~~~~~~l  239 (380)
T 1vj0_A          225 VIAGSPNRLKLAEEI  239 (380)
T ss_dssp             EEESCHHHHHHHHHT
T ss_pred             EEcCCHHHHHHHHHc
Confidence            999999999988764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.88  E-value=3.8e-22  Score=133.39  Aligned_cols=90  Identities=32%  Similarity=0.402  Sum_probs=83.7

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+|+|+||+++|++.++++|+++++++|++++++.|||++++..++ +|++|+|+|+|++|++++|+++.+|+++|++++
T Consensus       121 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~  199 (348)
T 2d8a_A          121 TDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSE  199 (348)
T ss_dssp             SCCSSBSEEEEEGGGEEECCTTSCHHHHTTHHHHHHHHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCcCcceEEeChHHeEECCCCCCHHHHHhhhHHHHHHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            4699999999999999999999999999988899999999988888 999999999999999999999999993399999


Q ss_pred             cChhhhhhhhc
Q psy16556         89 YVGIRIFPYKK   99 (100)
Q Consensus        89 ~~~~~~~~~~~   99 (100)
                      ++++|++++++
T Consensus       200 ~~~~~~~~~~~  210 (348)
T 2d8a_A          200 PSDFRRELAKK  210 (348)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999988765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.88  E-value=3.5e-22  Score=133.91  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|++... +|+|+||+++|++.++++|+++++++++.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++.
T Consensus       112 rV~~~~~-~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~  190 (353)
T 4dup_A          112 KVCGLAN-GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARA  190 (353)
T ss_dssp             EEEEECS-SCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHH
T ss_pred             EEEEecC-CCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            3455443 699999999999999999999999999877 9999999999 7899999999999976 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhhc
Q psy16556         79 YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .|++ |++++++++|++++++
T Consensus       191 ~Ga~-Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          191 FGAE-VYATAGSTGKCEACER  210 (353)
T ss_dssp             TTCE-EEEEESSHHHHHHHHH
T ss_pred             cCCE-EEEEeCCHHHHHHHHh
Confidence            9997 9999999999988765

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.88  E-value=5.9e-22  Score=132.24  Aligned_cols=91  Identities=33%  Similarity=0.489  Sum_probs=84.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACK-RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~-~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .+|+|+||+++|++.++++|+++++++|++++++.|+|++++ ..++ +|++|+|+|+|++|++++|+++.+|+++|+++
T Consensus       117 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~  195 (343)
T 2dq4_A          117 RDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVS  195 (343)
T ss_dssp             BCCSSBSEEEEEGGGEEEECTTSCHHHHTTHHHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCcceeEEEEchHHeEECCCCCCHHHHHhhhHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            469999999999999999999999999998888999999996 8889 99999999999999999999999999339999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       196 ~~~~~~~~~~~~l  208 (343)
T 2dq4_A          196 DPNPYRLAFARPY  208 (343)
T ss_dssp             CSCHHHHGGGTTT
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=9.2e-22  Score=131.87  Aligned_cols=97  Identities=27%  Similarity=0.335  Sum_probs=87.5

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|++....+|+|+||+++|++.++++|+++++++|+.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++.
T Consensus       114 rV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~  193 (351)
T 1yb5_A          114 RVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARA  193 (351)
T ss_dssp             EEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHH
Confidence            34554444699999999999999999999999999888 8999999999 5789999999999998 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhhc
Q psy16556         79 YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .|++ |+++++++++.+.+++
T Consensus       194 ~Ga~-Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          194 YGLK-ILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             TTCE-EEEEESSHHHHHHHHH
T ss_pred             CCCE-EEEEeCChhHHHHHHH
Confidence            9997 9999999999888765

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.88  E-value=6.2e-22  Score=132.01  Aligned_cols=91  Identities=26%  Similarity=0.378  Sum_probs=84.5

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ +++.|||++++..++++|++|+|+|+|++|++++|+++.+|++ |+++
T Consensus       116 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~-Vi~~  194 (339)
T 1rjw_A          116 VDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAV  194 (339)
T ss_dssp             BCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCE-EEEE
T ss_pred             CCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEE
Confidence            3699999999999999999999999999888 8899999999777999999999999988999999999999996 9999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++++++++++
T Consensus       195 ~~~~~~~~~~~~l  207 (339)
T 1rjw_A          195 DIGDEKLELAKEL  207 (339)
T ss_dssp             CSCHHHHHHHHHT
T ss_pred             eCCHHHHHHHHHC
Confidence            9999999988753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.87  E-value=5.2e-22  Score=132.56  Aligned_cols=96  Identities=25%  Similarity=0.196  Sum_probs=87.3

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|++... +|+|+||+++|++.++++|+++++++++.+ +++.|+|+++ +..++++|++|||+|+ |++|++++|+++.
T Consensus       104 rV~~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~  182 (342)
T 4eye_A          104 RVMAFNF-IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKG  182 (342)
T ss_dssp             EEEEECS-SCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHH
T ss_pred             EEEEecC-CCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            3455443 699999999999999999999999999766 9999999999 7899999999999998 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhhc
Q psy16556         79 YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|++ |+++++++++++++++
T Consensus       183 ~Ga~-Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          183 MGAK-VIAVVNRTAATEFVKS  202 (342)
T ss_dssp             TTCE-EEEEESSGGGHHHHHH
T ss_pred             cCCE-EEEEeCCHHHHHHHHh
Confidence            9997 9999999999988775

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.87  E-value=5.2e-22  Score=133.89  Aligned_cols=90  Identities=20%  Similarity=0.146  Sum_probs=84.4

Q ss_pred             CCCcccceEEecCCceEECCCC-CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDH-LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~-~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+++|++.++++|++ +++++|+.+ +++.|||++++..++++|++|||+|+|++|++++|+++.+|++ |++
T Consensus       145 ~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-Vi~  223 (369)
T 1uuf_A          145 TLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVA  223 (369)
T ss_dssp             CCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEE
T ss_pred             CCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEE
Confidence            3699999999999999999999 999998877 8999999999778999999999999999999999999999998 999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      ++++++|++++++
T Consensus       224 ~~~~~~~~~~a~~  236 (369)
T 1uuf_A          224 FTTSEAKREAAKA  236 (369)
T ss_dssp             EESSGGGHHHHHH
T ss_pred             EeCCHHHHHHHHH
Confidence            9999999998865

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.87  E-value=7.5e-22  Score=129.73  Aligned_cols=95  Identities=23%  Similarity=0.303  Sum_probs=85.1

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      |++... +|+|+||+++|++.++++|+++++++++.+ +++.|||+++ +.. +++|++|+|+|+ |++|++++|+++.+
T Consensus        72 V~~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~  149 (302)
T 1iz0_A           72 YAALVP-QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAM  149 (302)
T ss_dssp             EEEECS-SCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHT
T ss_pred             EEEecC-CcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHC
Confidence            444432 699999999999999999999999998877 8999999999 466 999999999998 99999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhcC
Q psy16556         80 GARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |++ |++++++++|+++++++
T Consensus       150 Ga~-Vi~~~~~~~~~~~~~~~  169 (302)
T 1iz0_A          150 GLR-VLAAASRPEKLALPLAL  169 (302)
T ss_dssp             TCE-EEEEESSGGGSHHHHHT
T ss_pred             CCE-EEEEeCCHHHHHHHHhc
Confidence            996 99999999999887653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.87  E-value=4.8e-22  Score=137.06  Aligned_cols=95  Identities=22%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             ecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-h--cCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          4 CATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-R--SGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         4 ~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~--~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|+...+|+|+||+++|++.++++|+++++++|+++ .++.|||+++. .  .++++|++|+|+|+ |++|++++|+++.
T Consensus       172 ~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~  251 (456)
T 3krt_A          172 WGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA  251 (456)
T ss_dssp             TTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHH
T ss_pred             cccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            344344699999999999999999999999999988 78999999983 3  78999999999998 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhhc
Q psy16556         79 YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|++ |++++++++|++++++
T Consensus       252 ~Ga~-vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          252 GGAN-PICVVSSPQKAEICRA  271 (456)
T ss_dssp             TTCE-EEEEESSHHHHHHHHH
T ss_pred             cCCe-EEEEECCHHHHHHHHh
Confidence            9998 8888899999998875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.87  E-value=1e-21  Score=131.74  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=83.2

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVG-LGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~-~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+++|++.++++|+++++++++.+ +++.|+|++++..+++ +|++|+|+|+|++|++++|+++.+|++ |++
T Consensus       131 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~-Vi~  209 (357)
T 2cf5_A          131 TQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHH-VTV  209 (357)
T ss_dssp             CCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEE
T ss_pred             CCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEE
Confidence            4699999999999999999999999999887 8899999999878888 999999999999999999999999997 999


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      ++++++|+++++
T Consensus       210 ~~~~~~~~~~~~  221 (357)
T 2cf5_A          210 ISSSNKKREEAL  221 (357)
T ss_dssp             EESSTTHHHHHH
T ss_pred             EeCChHHHHHHH
Confidence            999999988776

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.87  E-value=9.1e-22  Score=135.23  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             cCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH---HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          5 ATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC---KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         5 ~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~---~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      |+...+|+|+||+++|++.++++|+++++++|+++ .++.|||+++   +..++++|++|||+|+ |++|++++|+++..
T Consensus       165 G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~  244 (447)
T 4a0s_A          165 GFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNG  244 (447)
T ss_dssp             TTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHT
T ss_pred             cccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            33333699999999999999999999999999988 7889999999   3488999999999998 99999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhcC
Q psy16556         80 GARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |++ |++++++++|+++++++
T Consensus       245 Ga~-vi~~~~~~~~~~~~~~l  264 (447)
T 4a0s_A          245 GGI-PVAVVSSAQKEAAVRAL  264 (447)
T ss_dssp             TCE-EEEEESSHHHHHHHHHT
T ss_pred             CCE-EEEEeCCHHHHHHHHhc
Confidence            998 88888999999988764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.87  E-value=7.1e-22  Score=134.03  Aligned_cols=92  Identities=30%  Similarity=0.398  Sum_probs=84.0

Q ss_pred             CCCcccceEEecCC--ceEECCCCCChhh----hhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556          9 HHGNLSQFYKHAAD--FCYKLPDHLTLEE----GALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus         9 ~~G~~ae~~~~~~~--~~~~~p~~~~~~~----aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      .+|+|+||+++|++  .++++|+++++++    ++.+ +++.|||++++..++++|++|||+|+|++|++++|++|.+|+
T Consensus       131 ~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga  210 (398)
T 1kol_A          131 WTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGA  210 (398)
T ss_dssp             BCCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            36999999999987  8999999999887    5666 899999999988899999999999999999999999999999


Q ss_pred             cEEEEEecChhhhhhhhcC
Q psy16556         82 RVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++|++++++++|+++++++
T Consensus       211 ~~Vi~~~~~~~~~~~a~~l  229 (398)
T 1kol_A          211 AVVIVGDLNPARLAHAKAQ  229 (398)
T ss_dssp             SEEEEEESCHHHHHHHHHT
T ss_pred             CeEEEEcCCHHHHHHHHHc
Confidence            6699999999999998764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.87  E-value=1.2e-21  Score=129.95  Aligned_cols=96  Identities=21%  Similarity=0.105  Sum_probs=86.2

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      |+.....+|+|+||+++|++.++++|+++++++|+.+ ....|+|+++ +..++++|++|+|+|+ |++|++++|+++..
T Consensus        85 V~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~  164 (325)
T 3jyn_A           85 VAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKAL  164 (325)
T ss_dssp             EEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH
T ss_pred             EEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC
Confidence            4444445799999999999999999999999999977 7889999998 6689999999999996 99999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhc
Q psy16556         80 GARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |++ |++++++++|++++++
T Consensus       165 Ga~-Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          165 GAK-LIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             TCE-EEEEESSHHHHHHHHH
T ss_pred             CCE-EEEEeCCHHHHHHHHH
Confidence            997 9999999999998765

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.87  E-value=7.3e-22  Score=134.10  Aligned_cols=92  Identities=24%  Similarity=0.349  Sum_probs=84.7

Q ss_pred             CCCcccceEEecCC--ceEECCCCCChhh----hhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556          9 HHGNLSQFYKHAAD--FCYKLPDHLTLEE----GALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus         9 ~~G~~ae~~~~~~~--~~~~~p~~~~~~~----aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      .+|+|+||+++|++  .++++|+++++++    ++.+ +++.|||++++..++++|++|||+|+|++|++++|+++.+|+
T Consensus       131 ~~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga  210 (398)
T 2dph_A          131 WSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGA  210 (398)
T ss_dssp             CCCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            36999999999987  8999999999988    6766 899999999988999999999999999999999999999999


Q ss_pred             cEEEEEecChhhhhhhhcC
Q psy16556         82 RVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++|++++++++|+++++++
T Consensus       211 ~~Vi~~~~~~~~~~~a~~l  229 (398)
T 2dph_A          211 ACVIVGDQNPERLKLLSDA  229 (398)
T ss_dssp             SEEEEEESCHHHHHHHHTT
T ss_pred             CEEEEEcCCHHHHHHHHHc
Confidence            5599999999999998764

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.86  E-value=2.1e-21  Score=128.53  Aligned_cols=90  Identities=19%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             CCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556          8 PHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         8 ~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~   85 (100)
                      ..+|+|+||+++|++.++++|+++++++++.+ .++.|||++++..++++|++|+|+|+ |++|++++|+++.+|++ |+
T Consensus       103 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~-vi  181 (321)
T 3tqh_A          103 DHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTT-VI  181 (321)
T ss_dssp             TCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EE
T ss_pred             CCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EE
Confidence            34799999999999999999999999999988 78889999998899999999999985 99999999999999997 88


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      +++ ++++++++++
T Consensus       182 ~~~-~~~~~~~~~~  194 (321)
T 3tqh_A          182 TTA-SKRNHAFLKA  194 (321)
T ss_dssp             EEE-CHHHHHHHHH
T ss_pred             EEe-ccchHHHHHH
Confidence            886 5666777765

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.86  E-value=1.6e-21  Score=130.06  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=85.8

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      |+++. .+|+|+||+++|++.++++|+++++++|+.+ ....|+|+++ +..++++|++|+|+|+ |++|++++|+++..
T Consensus        90 V~~~~-~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~  168 (340)
T 3gms_A           90 VLPLR-GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL  168 (340)
T ss_dssp             EEECS-SSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH
T ss_pred             EEecC-CCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc
Confidence            44443 3799999999999999999999999999977 7888999988 7899999999999998 59999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhc
Q psy16556         80 GARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |++ |+++++++++++++++
T Consensus       169 Ga~-Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          169 NFR-LIAVTRNNKHTEELLR  187 (340)
T ss_dssp             TCE-EEEEESSSTTHHHHHH
T ss_pred             CCE-EEEEeCCHHHHHHHHh
Confidence            997 9999999999998865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.86  E-value=1.9e-21  Score=130.41  Aligned_cols=95  Identities=21%  Similarity=0.228  Sum_probs=85.8

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      |++... +|+|+||+++|++.++++|+++++++|+.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++..
T Consensus       108 V~~~~~-~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~  186 (354)
T 2j8z_A          108 AMALLP-GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA  186 (354)
T ss_dssp             EEEECS-SCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHT
T ss_pred             EEEecC-CCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHc
Confidence            444432 699999999999999999999999999877 8999999999 7889999999999996 99999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhc
Q psy16556         80 GARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |++ |+++++++++++.+++
T Consensus       187 Ga~-Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          187 GAI-PLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             TCE-EEEEESCHHHHHHHHH
T ss_pred             CCE-EEEEeCCHHHHHHHHH
Confidence            997 9999999999887754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.86  E-value=3.3e-21  Score=128.77  Aligned_cols=90  Identities=21%  Similarity=0.294  Sum_probs=83.5

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCC------CCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVG------LGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~------~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ .++.|||+++ +..+++      +|++|+|+|+ |++|++++|+++..
T Consensus        95 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~  174 (346)
T 3fbg_A           95 QNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY  174 (346)
T ss_dssp             SCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHT
T ss_pred             CCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            4799999999999999999999999999988 7888999999 678888      9999999965 99999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhc
Q psy16556         80 GARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |++ |++++++++|++++++
T Consensus       175 Ga~-Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          175 GLR-VITTASRNETIEWTKK  193 (346)
T ss_dssp             TCE-EEEECCSHHHHHHHHH
T ss_pred             CCE-EEEEeCCHHHHHHHHh
Confidence            996 9999999999998875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.86  E-value=5e-21  Score=128.84  Aligned_cols=89  Identities=21%  Similarity=0.281  Sum_probs=82.8

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVG-LGTSVLVLSAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~-~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+++|++.++++|+++++++++.+ +++.|+|++++..+++ +|++|+|+|+|++|++++|+++.+|++ |++
T Consensus       138 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~-Vi~  216 (366)
T 1yqd_A          138 TYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSK-VTV  216 (366)
T ss_dssp             CCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEE
T ss_pred             CCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEE
Confidence            4699999999999999999999999999877 8899999999777888 999999999999999999999999997 999


Q ss_pred             EecChhhhhhhh
Q psy16556         87 CKYVGIRIFPYK   98 (100)
Q Consensus        87 ~~~~~~~~~~~~   98 (100)
                      +++++++++.++
T Consensus       217 ~~~~~~~~~~~~  228 (366)
T 1yqd_A          217 ISTSPSKKEEAL  228 (366)
T ss_dssp             EESCGGGHHHHH
T ss_pred             EeCCHHHHHHHH
Confidence            999999988765

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.86  E-value=4.3e-21  Score=128.06  Aligned_cols=91  Identities=21%  Similarity=0.259  Sum_probs=83.1

Q ss_pred             CCCcccceEEec-CCceEECCCCCChhhhhcc-hhHHHHHHHHHhc--CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEE
Q psy16556          9 HHGNLSQFYKHA-ADFCYKLPDHLTLEEGALL-EPLAVGVHACKRS--GVGLGTSVLVLSAGPIGLVTILAAKAYGARVI   84 (100)
Q Consensus         9 ~~G~~ae~~~~~-~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~--~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v   84 (100)
                      .+|+|+||+++| ++.++++|+ +++++++.+ +++.|||+++...  ++++|++|+|+|+|++|++++|+++.+|..+|
T Consensus       121 ~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~V  199 (345)
T 3jv7_A          121 SPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARV  199 (345)
T ss_dssp             BCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEE
T ss_pred             CCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            379999999999 999999999 999999977 8999999999654  89999999999999999999999999954459


Q ss_pred             EEEecChhhhhhhhcC
Q psy16556         85 CVCKYVGIRIFPYKKI  100 (100)
Q Consensus        85 ~~~~~~~~~~~~~~~l  100 (100)
                      ++++++++|+++++++
T Consensus       200 i~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          200 IAVDLDDDRLALAREV  215 (345)
T ss_dssp             EEEESCHHHHHHHHHT
T ss_pred             EEEcCCHHHHHHHHHc
Confidence            9999999999998764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.86  E-value=3.4e-21  Score=128.69  Aligned_cols=89  Identities=26%  Similarity=0.311  Sum_probs=83.2

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ .++.|||+++ +..++++|++|||+|+ |++|++++|+++..|++ |+
T Consensus       101 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~-Vi  179 (343)
T 3gaz_A          101 LQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGAR-VF  179 (343)
T ss_dssp             CCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EE
T ss_pred             CCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EE
Confidence            4799999999999999999999999999988 7889999999 8899999999999996 99999999999999997 99


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      ++ .++++++++++
T Consensus       180 ~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          180 AT-ARGSDLEYVRD  192 (343)
T ss_dssp             EE-ECHHHHHHHHH
T ss_pred             EE-eCHHHHHHHHH
Confidence            98 89999988765

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.86  E-value=6.1e-21  Score=128.67  Aligned_cols=89  Identities=27%  Similarity=0.280  Sum_probs=81.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcC----CCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSG----VGLGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~----~~~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      +|+|+||+++|++.++++|+++++++|+.+ .++.|||+++ +..+    +++|++|+|+|+ |++|++++|+++..|++
T Consensus       131 ~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~  210 (375)
T 2vn8_A          131 QGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAH  210 (375)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             CccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCE
Confidence            699999999999999999999999999988 6789999999 5778    999999999996 99999999999999997


Q ss_pred             EEEEEecChhhhhhhhcC
Q psy16556         83 VICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~l  100 (100)
                       |++++ +++++++++++
T Consensus       211 -Vi~~~-~~~~~~~~~~l  226 (375)
T 2vn8_A          211 -VTAVC-SQDASELVRKL  226 (375)
T ss_dssp             -EEEEE-CGGGHHHHHHT
T ss_pred             -EEEEe-ChHHHHHHHHc
Confidence             88887 67888887653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.86  E-value=9.8e-22  Score=131.81  Aligned_cols=90  Identities=22%  Similarity=0.390  Sum_probs=83.3

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCC
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLG------TSVLVLSAGPIGLVT-ILAA-KAYGA   81 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g------~~vli~G~G~~G~~~-~~l~-~~~g~   81 (100)
                      +|+|+||+++|++.++++|++++ ++|++.+++.|||++++..++++|      ++|+|+|+|++|+++ +|++ +.+|+
T Consensus       121 ~G~~aey~~v~~~~~~~iP~~~~-~~aal~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga  199 (357)
T 2b5w_A          121 HGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGY  199 (357)
T ss_dssp             CCSCBSEEEEEGGGEEECCGGGS-TTGGGHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCC
T ss_pred             CcceeeEEEEchHHeEECCCCcc-hhhhhhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCC
Confidence            69999999999999999999999 777766999999999987888999      999999999999999 9999 99999


Q ss_pred             cEEEEEecChh---hhhhhhcC
Q psy16556         82 RVICVCKYVGI---RIFPYKKI  100 (100)
Q Consensus        82 ~~v~~~~~~~~---~~~~~~~l  100 (100)
                      ++|++++++++   |+++++++
T Consensus       200 ~~Vi~~~~~~~~~~~~~~~~~l  221 (357)
T 2b5w_A          200 ENLYCLGRRDRPDPTIDIIEEL  221 (357)
T ss_dssp             CEEEEEECCCSSCHHHHHHHHT
T ss_pred             cEEEEEeCCcccHHHHHHHHHc
Confidence            87999999998   99988764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.86  E-value=4.2e-21  Score=128.03  Aligned_cols=92  Identities=25%  Similarity=0.226  Sum_probs=84.9

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .+|+|+||+.+|++.++++|+++++++++.+ +++.|+|++++..++++|++|+|+|+|++|.+++|+++..+..+|+++
T Consensus       115 ~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~  194 (348)
T 4eez_A          115 VDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAV  194 (348)
T ss_dssp             BCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEE
T ss_pred             cCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEE
Confidence            4799999999999999999999999999988 899999999998999999999999999999999999998755559999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++|+++++++
T Consensus       195 ~~~~~r~~~~~~~  207 (348)
T 4eez_A          195 DINQDKLNLAKKI  207 (348)
T ss_dssp             ESCHHHHHHHHHT
T ss_pred             ECcHHHhhhhhhc
Confidence            9999999988764

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.86  E-value=3.6e-21  Score=129.06  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=80.1

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAY   79 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~   79 (100)
                      |++....+|+|+||+++|++.++++|+++++++|+.+ .+..|||+++ +..++++|++|||+|+ |++|++++|++|.+
T Consensus       112 V~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~  191 (357)
T 1zsy_A          112 VIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAAL  191 (357)
T ss_dssp             EEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHH
T ss_pred             EEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHc
Confidence            4444334699999999999999999999999999988 6789999999 5689999999999998 99999999999999


Q ss_pred             CCcEEEEEecC-h---hhhhhhhc
Q psy16556         80 GARVICVCKYV-G---IRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~-~---~~~~~~~~   99 (100)
                      |++ ++++.++ +   ++++++++
T Consensus       192 Ga~-vi~~~~~~~~~~~~~~~~~~  214 (357)
T 1zsy_A          192 GLR-TINVVRDRPDIQKLSDRLKS  214 (357)
T ss_dssp             TCE-EEEEECCCSCHHHHHHHHHH
T ss_pred             CCE-EEEEecCccchHHHHHHHHh
Confidence            998 5555443 2   24566654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.85  E-value=9.2e-21  Score=126.62  Aligned_cols=90  Identities=21%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+|+|+||+++|++.++++|+++++++++.+ +++.|||++++..++++|++|+|+|+ |++|++++|+++..|++ |++
T Consensus       121 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-V~~  199 (347)
T 2hcy_A          121 HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYR-VLG  199 (347)
T ss_dssp             BCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEE
T ss_pred             CCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCc-EEE
Confidence            3699999999999999999999999999888 88999999997779999999999999 99999999999999997 999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       200 ~~~~~~~~~~~~~  212 (347)
T 2hcy_A          200 IDGGEGKEELFRS  212 (347)
T ss_dssp             EECSTTHHHHHHH
T ss_pred             EcCCHHHHHHHHH
Confidence            9999998887765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.85  E-value=4.3e-21  Score=128.06  Aligned_cols=89  Identities=24%  Similarity=0.308  Sum_probs=82.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHh-cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKR-SGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~-~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||+++|++.++++|+++++++|+.+ +++.|||+++.. .++++|++|+|+|+ |++|++++|+++..|++ |++
T Consensus       118 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~-Vi~  196 (343)
T 2eih_A          118 HGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR-VIA  196 (343)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCE-EEE
T ss_pred             CccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEE
Confidence            699999999999999999999999999966 999999999955 69999999999999 99999999999999997 999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++++.+++
T Consensus       197 ~~~~~~~~~~~~~  209 (343)
T 2eih_A          197 TAGSEDKLRRAKA  209 (343)
T ss_dssp             EESSHHHHHHHHH
T ss_pred             EeCCHHHHHHHHh
Confidence            9999999888764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.85  E-value=2e-20  Score=126.11  Aligned_cols=90  Identities=19%  Similarity=0.109  Sum_probs=80.9

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-Hh-cCC-----------CCCCEEEEEcC-CHHHHHHH
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KR-SGV-----------GLGTSVLVLSA-GPIGLVTI   73 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~-~~~-----------~~g~~vli~G~-G~~G~~~~   73 (100)
                      .+|+|+||+++|++.++++|+++++++|+++ .++.|||+++ +. .++           ++|++|+|+|+ |++|++++
T Consensus       103 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~  182 (371)
T 3gqv_A          103 DQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTM  182 (371)
T ss_dssp             TCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHH
T ss_pred             CCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHH
Confidence            4799999999999999999999999999988 7789999999 55 443           89999999999 99999999


Q ss_pred             HHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         74 LAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        74 ~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |+++..|++ |+++. +++|+++++++
T Consensus       183 qla~~~Ga~-Vi~~~-~~~~~~~~~~l  207 (371)
T 3gqv_A          183 QMLRLSGYI-PIATC-SPHNFDLAKSR  207 (371)
T ss_dssp             HHHHHTTCE-EEEEE-CGGGHHHHHHT
T ss_pred             HHHHHCCCE-EEEEe-CHHHHHHHHHc
Confidence            999999997 88885 88999988764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.84  E-value=1.1e-20  Score=126.16  Aligned_cols=88  Identities=19%  Similarity=0.157  Sum_probs=81.8

Q ss_pred             CCCcccceEEec-CCceEECCCCCChhhhhcc-hhHHHHHHHHHhc-----CCCCCCEEEEEcCCHHHHHHHHHHHHc--
Q psy16556          9 HHGNLSQFYKHA-ADFCYKLPDHLTLEEGALL-EPLAVGVHACKRS-----GVGLGTSVLVLSAGPIGLVTILAAKAY--   79 (100)
Q Consensus         9 ~~G~~ae~~~~~-~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~-----~~~~g~~vli~G~G~~G~~~~~l~~~~--   79 (100)
                      .+|+|+||+++| ++.++++ +++++++|+.+ +++.|||++++..     ++ +|++|||+|+|++|++++|+++.+  
T Consensus       118 ~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~  195 (344)
T 2h6e_A          118 TNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMK  195 (344)
T ss_dssp             BCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCT
T ss_pred             cCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcC
Confidence            369999999999 9999999 99999999877 8899999999665     88 999999999999999999999999  


Q ss_pred             CCcEEEEEecChhhhhhhhc
Q psy16556         80 GARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~   99 (100)
                      |++ |++++++++|++++++
T Consensus       196 Ga~-Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          196 NIT-IVGISRSKKHRDFALE  214 (344)
T ss_dssp             TCE-EEEECSCHHHHHHHHH
T ss_pred             CCE-EEEEeCCHHHHHHHHH
Confidence            998 9999999999998875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.84  E-value=9.4e-21  Score=127.45  Aligned_cols=91  Identities=16%  Similarity=0.167  Sum_probs=83.2

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCC-----CCCEEEEEcC-CHHHHHHHHHHHHc-
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVG-----LGTSVLVLSA-GPIGLVTILAAKAY-   79 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~-----~g~~vli~G~-G~~G~~~~~l~~~~-   79 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ .++.|||+++ +..+++     +|++|||+|+ |++|++++|+++.+ 
T Consensus       117 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~  196 (363)
T 4dvj_A          117 RPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRT  196 (363)
T ss_dssp             SCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHC
T ss_pred             CCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            4799999999999999999999999999988 7788999998 778888     8999999995 99999999999985 


Q ss_pred             CCcEEEEEecChhhhhhhhcC
Q psy16556         80 GARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |++ |++++++++|+++++++
T Consensus       197 g~~-Vi~~~~~~~~~~~~~~l  216 (363)
T 4dvj_A          197 DLT-VIATASRPETQEWVKSL  216 (363)
T ss_dssp             CSE-EEEECSSHHHHHHHHHT
T ss_pred             CCE-EEEEeCCHHHHHHHHHc
Confidence            776 99999999999998764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.84  E-value=6.8e-21  Score=126.24  Aligned_cols=89  Identities=21%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +|+|+||+++|++.++++|+++++++|+.+ +++.|||+++. ..++++|++|+|+|+ |++|++++|+++..|++ |++
T Consensus        92 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-V~~  170 (327)
T 1qor_A           92 LGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIG  170 (327)
T ss_dssp             SCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE-EEE
T ss_pred             CceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEE
Confidence            599999999999999999999999998767 89999999994 789999999999996 99999999999999997 999


Q ss_pred             EecChhhhhhhhc
Q psy16556         87 CKYVGIRIFPYKK   99 (100)
Q Consensus        87 ~~~~~~~~~~~~~   99 (100)
                      +++++++.+.+++
T Consensus       171 ~~~~~~~~~~~~~  183 (327)
T 1qor_A          171 TVGTAQKAQSALK  183 (327)
T ss_dssp             EESSHHHHHHHHH
T ss_pred             EeCCHHHHHHHHH
Confidence            9999998887754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.84  E-value=6.9e-21  Score=126.56  Aligned_cols=89  Identities=24%  Similarity=0.167  Sum_probs=82.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhh--hhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEE--GALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVI   84 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~--aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v   84 (100)
                      +|+|+||+++|++.++++|+++++++  ++.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++ |
T Consensus        95 ~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-V  173 (333)
T 1wly_A           95 LGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-V  173 (333)
T ss_dssp             CCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCE-E
T ss_pred             CCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCE-E
Confidence            69999999999999999999999999  7766 8999999999 5789999999999997 99999999999999997 9


Q ss_pred             EEEecChhhhhhhhc
Q psy16556         85 CVCKYVGIRIFPYKK   99 (100)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (100)
                      +++++++++.+.+++
T Consensus       174 i~~~~~~~~~~~~~~  188 (333)
T 1wly_A          174 IGTVSTEEKAETARK  188 (333)
T ss_dssp             EEEESSHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHH
Confidence            999999988887754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.84  E-value=8e-21  Score=125.71  Aligned_cols=90  Identities=17%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH---HhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC---KRSGVGLGT-SVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~---~~~~~~~g~-~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ ..+.|||+++   ...++++++ +|||+|+ |++|++++|+++.+|++
T Consensus        94 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~  173 (324)
T 3nx4_A           94 HWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQ  173 (324)
T ss_dssp             BCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCE
Confidence            4799999999999999999999999999988 7889999887   345676633 4999998 99999999999999997


Q ss_pred             EEEEEecChhhhhhhhc
Q psy16556         83 VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~   99 (100)
                       |++++++++|++++++
T Consensus       174 -Vi~~~~~~~~~~~~~~  189 (324)
T 3nx4_A          174 -VAAVSGRESTHGYLKS  189 (324)
T ss_dssp             -EEEEESCGGGHHHHHH
T ss_pred             -EEEEeCCHHHHHHHHh
Confidence             9999999999998875

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.84  E-value=1.1e-20  Score=126.83  Aligned_cols=90  Identities=13%  Similarity=0.056  Sum_probs=78.4

Q ss_pred             eecCCCCCCcccceEEecCCceEECCC-----------CCChhhhhcc-hhHHHHHHHHHh-cCCCCC-CEEEEEcC-CH
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPD-----------HLTLEEGALL-EPLAVGVHACKR-SGVGLG-TSVLVLSA-GP   67 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~-----------~~~~~~aa~~-~~~~ta~~~~~~-~~~~~g-~~vli~G~-G~   67 (100)
                      |++....+|+|+||+++|++.++++|+           ++++++|+.+ +++.|||+++.. .++++| ++|||+|+ |+
T Consensus       100 V~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~  179 (364)
T 1gu7_A          100 VIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSA  179 (364)
T ss_dssp             EEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSH
T ss_pred             EEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcH
Confidence            444433469999999999999999998           8999999988 689999999955 689999 99999998 99


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         68 IGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        68 ~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|++++|+++.+|++ ++++.+++++
T Consensus       180 vG~~aiqlak~~Ga~-vi~~~~~~~~  204 (364)
T 1gu7_A          180 VGKYASQIGKLLNFN-SISVIRDRPN  204 (364)
T ss_dssp             HHHHHHHHHHHHTCE-EEEEECCCTT
T ss_pred             HHHHHHHHHHHCCCE-EEEEecCccc
Confidence            999999999999998 7777666554

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.84  E-value=9.5e-21  Score=128.04  Aligned_cols=94  Identities=20%  Similarity=0.106  Sum_probs=83.3

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEE--cCCHHHHHHHHHHHHc
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVL--SAGPIGLVTILAAKAY   79 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~--G~G~~G~~~~~l~~~~   79 (100)
                      |++..  +|+|+||+++|++.++++|+++++++|+.+ ....|||++++... ++|++|||+  |+|++|++++|+++.+
T Consensus       119 V~~~~--~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~  195 (379)
T 3iup_A          119 VAAIG--GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKD  195 (379)
T ss_dssp             EEECC--SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHH
T ss_pred             EEecC--CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHC
Confidence            44443  499999999999999999999999999977 78889998886655 899999999  4599999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhcC
Q psy16556         80 GARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |++ |++++++++|+++++++
T Consensus       196 Ga~-Vi~~~~~~~~~~~~~~l  215 (379)
T 3iup_A          196 GIK-LVNIVRKQEQADLLKAQ  215 (379)
T ss_dssp             TCC-EEEEESSHHHHHHHHHT
T ss_pred             CCE-EEEEECCHHHHHHHHhC
Confidence            998 99999999999998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.84  E-value=1.6e-20  Score=124.80  Aligned_cols=89  Identities=15%  Similarity=0.076  Sum_probs=81.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhh--hcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEG--ALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVI   84 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~a--a~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v   84 (100)
                      +|+|+||+++|++.++++|+++++.++  +.+ +++.|||+++ +..++++|++|||+|+ |++|++++|+++..|++ |
T Consensus        99 ~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~-V  177 (336)
T 4b7c_A           99 ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCR-V  177 (336)
T ss_dssp             ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-E
T ss_pred             cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-E
Confidence            489999999999999999999977665  445 8999999999 8899999999999998 99999999999999996 9


Q ss_pred             EEEecChhhhhhh-hc
Q psy16556         85 CVCKYVGIRIFPY-KK   99 (100)
Q Consensus        85 ~~~~~~~~~~~~~-~~   99 (100)
                      +++++++++.+.+ ++
T Consensus       178 i~~~~~~~~~~~~~~~  193 (336)
T 4b7c_A          178 VGIAGGAEKCRFLVEE  193 (336)
T ss_dssp             EEEESSHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHH
Confidence            9999999999887 54

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.84  E-value=1.4e-20  Score=128.03  Aligned_cols=92  Identities=26%  Similarity=0.416  Sum_probs=80.8

Q ss_pred             CCCcccceEEecCCceEECCCCCCh------hhhhcc-hhHHHHHHHHH-h-cCCCCCCEEEEEcCCHHHHHHHHHHHHc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTL------EEGALL-EPLAVGVHACK-R-SGVGLGTSVLVLSAGPIGLVTILAAKAY   79 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~------~~aa~~-~~~~ta~~~~~-~-~~~~~g~~vli~G~G~~G~~~~~l~~~~   79 (100)
                      .+|+|+||+++|++.++++|+++++      .+++.+ +++.|||+++. . .++++|++|||+|+|++|++++|+++.+
T Consensus       157 ~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~  236 (404)
T 3ip1_A          157 VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHA  236 (404)
T ss_dssp             BCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence            4799999999999999999998753      345555 89999999993 4 4899999999999999999999999999


Q ss_pred             CCcEEEEEecChhhhhhhhcC
Q psy16556         80 GARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        80 g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |+++|++++++++|+++++++
T Consensus       237 Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          237 GASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             TCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHc
Confidence            996699999999999988753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.84  E-value=2.9e-20  Score=123.59  Aligned_cols=90  Identities=22%  Similarity=0.192  Sum_probs=82.3

Q ss_pred             CCcccceEEec-CCceEECCCCCChhh---hhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         10 HGNLSQFYKHA-ADFCYKLPDHLTLEE---GALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        10 ~G~~ae~~~~~-~~~~~~~p~~~~~~~---aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      +|+|+||+++| ++.++++|+++++++   ++.+ .+..|+|+++ +..++++|++|||+|+ |++|++++|+++..|++
T Consensus        96 ~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~  175 (334)
T 3qwb_A           96 NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH  175 (334)
T ss_dssp             SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCE
T ss_pred             CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence            69999999999 999999999999999   6655 8889999999 5679999999999996 99999999999999997


Q ss_pred             EEEEEecChhhhhhhhcC
Q psy16556         83 VICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~l  100 (100)
                       |++++++++|+++++++
T Consensus       176 -Vi~~~~~~~~~~~~~~~  192 (334)
T 3qwb_A          176 -TIAVASTDEKLKIAKEY  192 (334)
T ss_dssp             -EEEEESSHHHHHHHHHT
T ss_pred             -EEEEeCCHHHHHHHHHc
Confidence             99999999999988764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.84  E-value=1.6e-20  Score=124.58  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH---HhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC---KRSGVGLGT-SVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~---~~~~~~~g~-~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      .+|+|+||+++|++.++++|+++++++|+++ +++.|+|.++   +..++++|+ +|+|+|+ |++|++++|+++.+|++
T Consensus        97 ~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~  176 (328)
T 1xa0_A           97 HFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT  176 (328)
T ss_dssp             BCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCE
Confidence            3699999999999999999999999999988 6788888776   456889986 9999998 99999999999999998


Q ss_pred             EEEEEecChhhhhhhhcC
Q psy16556         83 VICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~l  100 (100)
                       |++++++++|+++++++
T Consensus       177 -vi~~~~~~~~~~~~~~l  193 (328)
T 1xa0_A          177 -VEASTGKAAEHDYLRVL  193 (328)
T ss_dssp             -EEEEESCTTCHHHHHHT
T ss_pred             -EEEEECCHHHHHHHHHc
Confidence             99999999999988764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.83  E-value=1.7e-20  Score=124.51  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=81.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH---HhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC---KRSGVGLGT-SVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~---~~~~~~~g~-~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      .+|+|+||+++|++.++++|+++++++|+++ .++.|+|.++   +..++++|+ +|||+|+ |++|++++|+++.+|++
T Consensus        98 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~  177 (330)
T 1tt7_A           98 RDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD  177 (330)
T ss_dssp             BCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC
T ss_pred             CCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCE
Confidence            3699999999999999999999999999988 6788888776   456889996 9999998 99999999999999998


Q ss_pred             EEEEEecChhhhhhhhc
Q psy16556         83 VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~   99 (100)
                       |++++++++|++++++
T Consensus       178 -vi~~~~~~~~~~~~~~  193 (330)
T 1tt7_A          178 -VVASTGNREAADYLKQ  193 (330)
T ss_dssp             -EEEEESSSSTHHHHHH
T ss_pred             -EEEEeCCHHHHHHHHH
Confidence             9999999999988765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.83  E-value=1.3e-20  Score=126.64  Aligned_cols=89  Identities=21%  Similarity=0.393  Sum_probs=81.7

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHH-----hcCCC--C-------CCEEEEEcCCHHHHHHHH
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACK-----RSGVG--L-------GTSVLVLSAGPIGLVTIL   74 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~-----~~~~~--~-------g~~vli~G~G~~G~~~~~   74 (100)
                      .+|+|+||+++|++.++++|++++ ++|++.+++.|||+++.     ..+++  +       |++|+|+|+|++|++++|
T Consensus       120 ~~G~~aey~~v~~~~~~~iP~~l~-~~Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q  198 (366)
T 2cdc_A          120 MDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTL  198 (366)
T ss_dssp             ECCSCBSEEEECGGGEEEECGGGT-TTGGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHH
T ss_pred             CCCceeEEEEechHHeEECcCCcc-hhhhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHH
Confidence            369999999999999999999999 88876699999999997     78888  8       999999999999999999


Q ss_pred             HHHHcCCcEEEEEecCh---hhhhhhhc
Q psy16556         75 AAKAYGARVICVCKYVG---IRIFPYKK   99 (100)
Q Consensus        75 l~~~~g~~~v~~~~~~~---~~~~~~~~   99 (100)
                      +++.+|++ |+++++++   +|.+++++
T Consensus       199 ~a~~~Ga~-Vi~~~~~~~~~~~~~~~~~  225 (366)
T 2cdc_A          199 LFRTYGLE-VWMANRREPTEVEQTVIEE  225 (366)
T ss_dssp             HHHHHTCE-EEEEESSCCCHHHHHHHHH
T ss_pred             HHHhCCCE-EEEEeCCccchHHHHHHHH
Confidence            99999996 99999998   88887764

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.83  E-value=5.8e-20  Score=122.88  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|+++.. +|+|+||+++|++.++++|+++++++++.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++.
T Consensus        87 rV~~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~  165 (349)
T 4a27_A           87 RVMAFVN-YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCST  165 (349)
T ss_dssp             EEEEECS-SCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTT
T ss_pred             EEEEecC-CCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence            3445443 699999999999999999999999999988 7999999998 7789999999999998 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhh
Q psy16556         79 YGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|..+|++++ +++|.+.++
T Consensus       166 ~g~~~V~~~~-~~~~~~~~~  184 (349)
T 4a27_A          166 VPNVTVFGTA-STFKHEAIK  184 (349)
T ss_dssp             STTCEEEEEE-CGGGHHHHG
T ss_pred             cCCcEEEEeC-CHHHHHHHH
Confidence            9765588886 666766654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.82  E-value=2.8e-20  Score=124.37  Aligned_cols=89  Identities=19%  Similarity=0.174  Sum_probs=77.6

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCC-CEEEEEcC-CHHHHHHHHHHHHcCCcEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLG-TSVLVLSA-GPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g-~~vli~G~-G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ ....|||++++..+ ++| ++++|+|+ |++|++++|+++..|++ |+
T Consensus       116 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~-Vi  193 (349)
T 3pi7_A          116 NWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFR-PI  193 (349)
T ss_dssp             SCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCE-EE
T ss_pred             CCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EE
Confidence            4799999999999999999999999999977 78888998777666 666 78888866 99999999999999997 99


Q ss_pred             EEecChhhhhhhhc
Q psy16556         86 VCKYVGIRIFPYKK   99 (100)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (100)
                      +++++++|++++++
T Consensus       194 ~~~~~~~~~~~~~~  207 (349)
T 3pi7_A          194 VTVRRDEQIALLKD  207 (349)
T ss_dssp             EEESCGGGHHHHHH
T ss_pred             EEeCCHHHHHHHHH
Confidence            99999999998875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.81  E-value=2.6e-19  Score=119.62  Aligned_cols=89  Identities=24%  Similarity=0.301  Sum_probs=82.4

Q ss_pred             CCCcccceEEecC-CceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCcEE
Q psy16556          9 HHGNLSQFYKHAA-DFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAY-GARVI   84 (100)
Q Consensus         9 ~~G~~ae~~~~~~-~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~-g~~~v   84 (100)
                      .+|+|+||+++|+ +.++++ +++++++++.+ +++.|+|++++..++++|++|+|+|+ |++|++++|+++.. |++ |
T Consensus       122 ~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~-V  199 (347)
T 1jvb_A          122 FDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-I  199 (347)
T ss_dssp             BCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCE-E
T ss_pred             CCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCe-E
Confidence            3699999999999 999999 99999999877 88999999998889999999999999 59999999999999 997 9


Q ss_pred             EEEecChhhhhhhhc
Q psy16556         85 CVCKYVGIRIFPYKK   99 (100)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (100)
                      +++++++++++.+++
T Consensus       200 i~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          200 IGVDVREEAVEAAKR  214 (347)
T ss_dssp             EEEESSHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHH
Confidence            999999999888764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.81  E-value=1.9e-19  Score=120.98  Aligned_cols=89  Identities=18%  Similarity=0.162  Sum_probs=79.2

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +|+|+||+++|++.++++|+. +++.+++.+++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++ |+++
T Consensus       117 ~G~~aey~~v~~~~~~~~P~~-~~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~  194 (362)
T 2c0c_A          117 PGSFAEYTVVPASIATPVPSV-KPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCH-VIGT  194 (362)
T ss_dssp             SCCSBSEEEEEGGGCEECSSS-CHHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCE-EEEE
T ss_pred             CCcceeEEEEcHHHeEECCCC-chHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEE
Confidence            599999999999999999996 455555558999999999 6689999999999996 99999999999999997 9999


Q ss_pred             ecChhhhhhhhcC
Q psy16556         88 KYVGIRIFPYKKI  100 (100)
Q Consensus        88 ~~~~~~~~~~~~l  100 (100)
                      +++++++++++++
T Consensus       195 ~~~~~~~~~~~~~  207 (362)
T 2c0c_A          195 CSSDEKSAFLKSL  207 (362)
T ss_dssp             ESSHHHHHHHHHT
T ss_pred             ECCHHHHHHHHHc
Confidence            9999999887753

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.80  E-value=1.4e-19  Score=131.80  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|++..  +|+|+||+++|++.++++|+++++++++.+ +++.|+|+++ +..++++|++|||+|+ |++|++++|++|.
T Consensus       291 rV~~~~--~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~  368 (795)
T 3slk_A          291 RVMGMI--PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARH  368 (795)
T ss_dssp             EEEECC--SSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHH
T ss_pred             EEEEEe--cCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence            345543  599999999999999999999999999999 7899999998 7889999999999997 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhh
Q psy16556         79 YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++ |+++++++ |.+.+
T Consensus       369 ~Ga~-V~~t~~~~-k~~~l  385 (795)
T 3slk_A          369 LGAE-VYATASED-KWQAV  385 (795)
T ss_dssp             TTCC-EEEECCGG-GGGGS
T ss_pred             cCCE-EEEEeChH-Hhhhh
Confidence            9998 99987655 55543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.79  E-value=1.1e-18  Score=115.98  Aligned_cols=88  Identities=23%  Similarity=0.201  Sum_probs=78.2

Q ss_pred             CcccceEEecCCceEECCCC----CChhhh-hcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         11 GNLSQFYKHAADFCYKLPDH----LTLEEG-ALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~----~~~~~a-a~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      |+|+||+++|++.++++|++    ++++++ +.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++
T Consensus        93 g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~  172 (333)
T 1v3u_A           93 SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCK  172 (333)
T ss_dssp             CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCE
T ss_pred             CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCE
Confidence            88999999999999999997    888863 555 9999999999 7789999999999998 99999999999999997


Q ss_pred             EEEEEecChhhhhhhhc
Q psy16556         83 VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        83 ~v~~~~~~~~~~~~~~~   99 (100)
                       |+++++++++.+.+++
T Consensus       173 -V~~~~~~~~~~~~~~~  188 (333)
T 1v3u_A          173 -VVGAAGSDEKIAYLKQ  188 (333)
T ss_dssp             -EEEEESSHHHHHHHHH
T ss_pred             -EEEEeCCHHHHHHHHh
Confidence             9999999998887754

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.78  E-value=5.9e-19  Score=118.21  Aligned_cols=90  Identities=13%  Similarity=0.034  Sum_probs=80.2

Q ss_pred             CCcccceEEecCCceEECCCCC-----ChhhhhcchhHHHHHHHH-HhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcC
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHL-----TLEEGALLEPLAVGVHAC-KRSGVGLG--TSVLVLSA-GPIGLVTILAAKAYG   80 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~-----~~~~aa~~~~~~ta~~~~-~~~~~~~g--~~vli~G~-G~~G~~~~~l~~~~g   80 (100)
                      .|+|+||+++|++.++++|+++     +++.+++.+++.|||+++ +..++++|  ++|+|+|+ |++|++++|+++..|
T Consensus       106 ~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~G  185 (357)
T 2zb4_A          106 YWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLG  185 (357)
T ss_dssp             EEESBSEEEEEGGGCEECCGGGGTTCGGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEchHHceecCcccccCchhHHHHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCC
Confidence            3799999999999999999999     666455559999999999 78999999  99999998 999999999999999


Q ss_pred             CcEEEEEecChhhhhhhhc
Q psy16556         81 ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++|+++++++++++.+++
T Consensus       186 a~~Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          186 CSRVVGICGTHEKCILLTS  204 (357)
T ss_dssp             CSEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHH
Confidence            9449999999988887754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.78  E-value=1.1e-18  Score=137.62  Aligned_cols=96  Identities=21%  Similarity=0.194  Sum_probs=87.2

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHH
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKA   78 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~   78 (100)
                      +|++... +|+|+||+++|++.++++|+++++++|+.+ +++.|+|+++ +..++++|++|||+|+ |++|++++|++|.
T Consensus      1612 rV~g~~~-~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~ 1690 (2512)
T 2vz8_A         1612 RVMGMVP-AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALS 1690 (2512)
T ss_dssp             CEEEECS-SCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHH
T ss_pred             EEEEeec-CCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHH
Confidence            4566543 699999999999999999999999999998 7899999999 7789999999999987 9999999999999


Q ss_pred             cCCcEEEEEecChhhhhhhhc
Q psy16556         79 YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        79 ~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .|++ |++++++++|++++++
T Consensus      1691 ~Ga~-Viat~~s~~k~~~l~~ 1710 (2512)
T 2vz8_A         1691 RGCR-VFTTVGSAEKRAYLQA 1710 (2512)
T ss_dssp             TTCE-EEEEESCHHHHHHHHH
T ss_pred             cCCE-EEEEeCChhhhHHHHh
Confidence            9998 9999999999888764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.76  E-value=4.6e-18  Score=113.28  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CcccceEEecCCc--eEECCC---CCChhhhhcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcE
Q psy16556         11 GNLSQFYKHAADF--CYKLPD---HLTLEEGALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARV   83 (100)
Q Consensus        11 G~~ae~~~~~~~~--~~~~p~---~~~~~~aa~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~   83 (100)
                      |+|+||++++++.  ++++|+   +++++.|++.+++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++ 
T Consensus       104 g~~aey~~v~~~~~~~~~ip~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~-  182 (345)
T 2j3h_A          104 VAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCY-  182 (345)
T ss_dssp             EESBSEEEECCCTTTCEEECCCSSCTTGGGTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-
T ss_pred             cCceeEEEecccccceeecCCCCCCHHHHHHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-
Confidence            7899999999876  999996   45656444448999999999 7789999999999998 99999999999999997 


Q ss_pred             EEEEecChhhhhhhh
Q psy16556         84 ICVCKYVGIRIFPYK   98 (100)
Q Consensus        84 v~~~~~~~~~~~~~~   98 (100)
                      |+++++++++++.++
T Consensus       183 V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          183 VVGSAGSKEKVDLLK  197 (345)
T ss_dssp             EEEEESSHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHH
Confidence            999999999988876

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.68  E-value=8.9e-17  Score=99.76  Aligned_cols=77  Identities=26%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             CceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         22 DFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        22 ~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +.++++|+++++++++.+ +++.|+|+++ +..++++|++|+|+|+ |++|++++|+++..|++ |+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH
Confidence            467899999999999988 7999999999 5679999999999996 99999999999999997 999999998887765


Q ss_pred             c
Q psy16556         99 K   99 (100)
Q Consensus        99 ~   99 (100)
                      +
T Consensus        81 ~   81 (198)
T 1pqw_A           81 R   81 (198)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.94  E-value=2.2e-11  Score=83.06  Aligned_cols=89  Identities=19%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcC----CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSG----VGLGTSVLVLSAGPIGLVTILAAKAYGARVIC   85 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~----~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~   85 (100)
                      .|++++|+..+...++++|++++.+.++...+.+++|++++...    -.+|++|+|+|+|++|.++++.++..|+++|+
T Consensus       116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~  195 (404)
T 1gpj_A          116 LGTLDEALKIVFRRAINLGKRAREETRISEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVL  195 (404)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHSSTTCSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEE
T ss_pred             cCCchHHHHHHHHHHhhhhccCcchhhhcCCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEE
Confidence            47788888888888888999888777666677788888874322    35899999999999999999999999996699


Q ss_pred             EEecChhhh-hhhh
Q psy16556         86 VCKYVGIRI-FPYK   98 (100)
Q Consensus        86 ~~~~~~~~~-~~~~   98 (100)
                      +++++++|. ++++
T Consensus       196 v~~r~~~ra~~la~  209 (404)
T 1gpj_A          196 VANRTYERAVELAR  209 (404)
T ss_dssp             EECSSHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHH
Confidence            999998886 4443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.40  E-value=7.9e-07  Score=62.18  Aligned_cols=58  Identities=22%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHhcC--CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         41 PLAVGVHACKRSG--VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        41 ~~~ta~~~~~~~~--~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...+.++++++..  ..+|++|+|+|.|.+|..+++.++.+|++ |+++++++++.+.+++
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~-Viv~d~~~~~~~~A~~  315 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGAR-VSVTEIDPINALQAMM  315 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHH
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH
Confidence            3445667764433  78999999999999999999999999997 9999999988766543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.31  E-value=1.5e-07  Score=55.37  Aligned_cols=55  Identities=7%  Similarity=-0.045  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         41 PLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        41 ~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +.++++++++......+++++|+|+|.+|..+++.++..|.+ |+++++++++.+.
T Consensus         5 ~~sv~~~a~~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~   59 (144)
T 3oj0_A            5 KVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNIDHVRA   59 (144)
T ss_dssp             CCSHHHHHHHHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCHHHHHH
T ss_pred             cccHHHHHHHHHHhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCHHHHHH
Confidence            456677787655555599999999999999999998889998 9999999888754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.28  E-value=1.8e-06  Score=58.94  Aligned_cols=43  Identities=26%  Similarity=0.196  Sum_probs=38.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++++|+|+|+|.+|+.++++++.+|++ |+++++++++.+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAI-VRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHH
Confidence            589999999999999999999999997 9999999998776654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.26  E-value=1.8e-06  Score=58.54  Aligned_cols=43  Identities=26%  Similarity=0.247  Sum_probs=39.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++++|+|+|+|.+|+.+++.++.+|++ |+++++++++.+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH
Confidence            689999999999999999999999997 9999999888776654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.26  E-value=1.6e-06  Score=58.36  Aligned_cols=42  Identities=19%  Similarity=0.225  Sum_probs=38.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++|+|+|+|++|+.+++.++.+|++ |++++++++|.+.+++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~-V~v~dr~~~r~~~~~~  208 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDINVERLSYLET  208 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHH
Confidence            48999999999999999999999995 9999999998877653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.20  E-value=5.3e-06  Score=49.24  Aligned_cols=45  Identities=11%  Similarity=0.161  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ...++++|+|+|+|.+|..+++.++..|.+ |+++++++++.+.++
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~-V~vid~~~~~~~~~~   59 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHS-VVVVDKNEYAFHRLN   59 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCGGGGGGSC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHH
Confidence            345689999999999999999999999997 999999998877654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.19  E-value=3.5e-06  Score=57.22  Aligned_cols=43  Identities=26%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++.+|+|+|+|.+|+.+++.++.+|++ |++.++++++++.+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~-V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAK-TTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCE-EEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH
Confidence            578999999999999999999999997 9999999998877654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.18  E-value=3.6e-06  Score=57.56  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++.+|+|+|+|.+|+.++++++.+|++ |++.|+++++++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~-V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAV-VSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHH
Confidence            578999999999999999999999997 9999999998877654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.17  E-value=4e-06  Score=56.71  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=38.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++++|+|+|+|.+|+.+++.++.+|++ |+++++++++.+.++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~-V~~~d~~~~~l~~~~  208 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGAT-VTVLDINIDKLRQLD  208 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHH
Confidence            589999999999999999999999996 999999998877654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.08  E-value=8.1e-06  Score=55.00  Aligned_cols=42  Identities=21%  Similarity=0.274  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++++|+|+|+|++|+.+++.++.+|++ |+++++++++.+.++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~-V~~~d~~~~~~~~~~  206 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQ-VTILDVNHKRLQYLD  206 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHH
Confidence            468999999999999999999999997 999999998876654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.91  E-value=4.6e-05  Score=44.47  Aligned_cols=44  Identities=14%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..++++|+|.|.+|..+++.++..|.+ |+++++++++.+.+++
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~~-v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIP-LVVIETSRTRVDELRE   48 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHH
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH
Confidence            3457899999999999999999999998 9999999998876653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.87  E-value=3.1e-05  Score=43.26  Aligned_cols=43  Identities=16%  Similarity=0.120  Sum_probs=36.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+++++|+|+|.+|..+++.+...|..+|+++++++++.+.++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~   46 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN   46 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            4578999999999999999999999434999999998877553

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.87  E-value=0.0001  Score=50.85  Aligned_cols=52  Identities=21%  Similarity=0.157  Sum_probs=42.1

Q ss_pred             HHHHHH-Hhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         44 VGVHAC-KRS-GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        44 ta~~~~-~~~-~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ..++++ +.. ..-.|++++|+|.|.+|..+++.++.+|++ |+++++++.+...
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~-Viv~D~dp~ra~~  258 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSI-VYVTEIDPICALQ  258 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH
T ss_pred             HHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEeCChhhhHH
Confidence            345566 333 356899999999999999999999999998 9999988866543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.87  E-value=3.2e-05  Score=46.88  Aligned_cols=41  Identities=20%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAY-GARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~-g~~~v~~~~~~~~~~~~~~   98 (100)
                      +++++|+|.|.+|..+++.++.. |.+ |+++++++++.+.++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~   80 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHR   80 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHH
Confidence            67899999999999999999998 998 999999999887654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.85  E-value=3.3e-05  Score=44.58  Aligned_cols=41  Identities=12%  Similarity=0.199  Sum_probs=35.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +++++|+|+|.+|..+++.++..|.+ |+++++++++.+.++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~   46 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYA   46 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHTTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHH
Confidence            56799999999999999999999998 899999888776553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.82  E-value=5e-05  Score=44.10  Aligned_cols=41  Identities=12%  Similarity=0.125  Sum_probs=36.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .++++|+|+|.+|..+++.+...|.+ |+++++++++.+.++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~-V~~id~~~~~~~~~~   46 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKK-VLAVDKSKEKIELLE   46 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHH
Confidence            46899999999999999999999998 999999999877654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.81  E-value=1.1e-05  Score=50.75  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=42.7

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         46 VHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        46 ~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+.+...++.++++||.+|+| .|..+..+++. +.+ ++++|.+++..+.+++
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~~-v~~vD~~~~~~~~a~~  131 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AGE-VWTFEAVEEFYKTAQK  131 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SSE-EEEECSCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CCE-EEEEecCHHHHHHHHH
Confidence            356677888999999999998 58888899888 665 9999999998887754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.81  E-value=5.4e-05  Score=49.43  Aligned_cols=42  Identities=24%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.|++++|+|.|.+|..+++.++.+|.+ |++.++++++.+.+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~-V~~~dr~~~~~~~~  194 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAK-VKVGARESDLLARI  194 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            4689999999999999999999999996 99999988775543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.73  E-value=4.2e-05  Score=50.39  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=42.1

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         51 RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        51 ~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+++++++||.+|+|+.|..++.+++..|++ |+++|.+++..+.+++
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~  164 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRK  164 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHH
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHH
Confidence            46889999999999998777778888888988 9999999999988765

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.73  E-value=0.00025  Score=47.74  Aligned_cols=42  Identities=26%  Similarity=0.178  Sum_probs=36.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.|++|.|.|.|.+|+.+++.++.+|++ |++.|.++++.++.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Gak-VvvsD~~~~~~~~a  214 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTERVAHA  214 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEEeCCccHHHHH
Confidence            5799999999999999999999999998 88888887654433

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.70  E-value=9.9e-05  Score=48.31  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=36.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -.|++++|+|.|.+|..+++.++.+|.+ |++.++++++.+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~-V~~~d~~~~~~~~  195 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGAN-VKVGARSSAHLAR  195 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSHHHHHH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4689999999999999999999999997 9999998877654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.67  E-value=9.3e-05  Score=51.74  Aligned_cols=42  Identities=26%  Similarity=0.218  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.|++++|+|+|++|..+++.++..|++ |+++++++++.+.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~-Viv~D~~~~~a~~A  304 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGAR-VIVTEIDPICALQA  304 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            4799999999999999999999999997 99999988776543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.62  E-value=0.00017  Score=45.09  Aligned_cols=41  Identities=20%  Similarity=0.093  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++|+|.|+ |.+|..+++.+...|.+ |+++++++++.+.+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~~~~~   61 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHE-PVAMVRNEEQGPEL   61 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHH
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCe-EEEEECChHHHHHH
Confidence            4789999998 99999999999999998 99999998877654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.61  E-value=0.00035  Score=45.63  Aligned_cols=43  Identities=21%  Similarity=0.161  Sum_probs=37.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.+++++|+|+|++|..++..+...|+++|++++++++|.+.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            4688999999999999999999999997799999998887643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.61  E-value=0.00018  Score=41.24  Aligned_cols=40  Identities=13%  Similarity=0.112  Sum_probs=34.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +.+++|+|+|.+|..+++.+...|.+ |+++++++++.+.+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~-v~~~d~~~~~~~~~   43 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDKDICKKA   43 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHH
Confidence            46899999999999999998888987 99999988876654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.61  E-value=0.0004  Score=47.94  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=40.8

Q ss_pred             HHHHH-Hh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         45 GVHAC-KR-SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        45 a~~~~-~~-~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+.++ +. ...-.|++|.|+|.|.+|..+++.++.+|++ |+++++++.+...
T Consensus       197 lldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~-Viv~D~~p~~a~~  249 (436)
T 3h9u_A          197 LVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGAR-VVVTEVDPINALQ  249 (436)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH
T ss_pred             HHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCChhhhHH
Confidence            44455 32 3344799999999999999999999999998 9999998876543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.60  E-value=9.8e-05  Score=45.49  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=28.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|+|+|+|+.|+.++..+...|.+ |.+++.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~-V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQ-VHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCC-EEEEECCC
Confidence            499999999999999999999999 99998654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.55  E-value=0.00043  Score=48.07  Aligned_cols=49  Identities=20%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             HHHHH-Hhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         45 GVHAC-KRS-GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        45 a~~~~-~~~-~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+.++ +.. ..-.|++++|+|.|.+|..+++.++.+|++ |+++++++.+.
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~-Viv~d~dp~~a  283 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGAR-VKVTEVDPICA  283 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHH
T ss_pred             HHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCE-EEEEeCCcchh
Confidence            44555 322 356899999999999999999999999998 99998887654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.55  E-value=0.00019  Score=47.60  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC---hhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV---GIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~---~~~~~   95 (100)
                      .+++++|+|+|++|.+++..+...|+++|+++.++   .+|.+
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~  189 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAV  189 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHH
Confidence            58899999999999999999999999779999998   54443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.54  E-value=0.00026  Score=45.00  Aligned_cols=41  Identities=22%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   47 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRNGEKLAPL   47 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999988876543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.52  E-value=0.00026  Score=44.39  Aligned_cols=40  Identities=33%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   46 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDS   46 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            5789999998 99999999999999998 9999888876653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.50  E-value=0.00025  Score=45.84  Aligned_cols=40  Identities=15%  Similarity=0.168  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|+|+|++|..+++.+...|.+ |++++++++|.+.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~-V~v~~R~~~~~~~  157 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEE  157 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEECCHHHHHH
Confidence            688999999999999999999999976 9999999887643

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.49  E-value=0.00029  Score=44.86  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~   48 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAE-VLLTGRNESNIARI   48 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999998876554

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.48  E-value=0.00028  Score=46.25  Aligned_cols=42  Identities=17%  Similarity=0.016  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -.+++++|+|+|++|..++..+...|+++|++++++++|.+.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~  180 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAER  180 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHH
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            368899999999999999999999999669999999887643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.47  E-value=0.00026  Score=47.84  Aligned_cols=42  Identities=17%  Similarity=0.106  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      --.|++|+|.|.|.+|..+++.+...|++ |++.|+++++.+.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~~~~~l~~  211 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNKAAVSA  211 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence            35789999999999999999999999998 8899988887653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.47  E-value=0.00032  Score=44.51  Aligned_cols=42  Identities=19%  Similarity=0.153  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGAT-VILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            35789999998 89999999998899998 99999988876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.47  E-value=0.00032  Score=45.63  Aligned_cols=41  Identities=20%  Similarity=0.098  Sum_probs=36.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.....|++ |+++++++++++.+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r~~~~l~~~   69 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRRKDVLDAA   69 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999999 99999999887654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.46  E-value=0.00033  Score=44.24  Aligned_cols=41  Identities=20%  Similarity=0.088  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINAEAAEAV   49 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            5789999998 99999999999999998 99999988876543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.46  E-value=0.00022  Score=44.94  Aligned_cols=43  Identities=14%  Similarity=0.144  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..++++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   54 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGSNEEKLKSL   54 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            457899999998 89999999999899998 99999988876554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.46  E-value=0.00035  Score=43.64  Aligned_cols=40  Identities=15%  Similarity=0.003  Sum_probs=34.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++++|.|+ |++|..+++.+...|++ |+.+++++++.+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   42 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSVDRLEKI   42 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            678999998 89999999999999998 99999988876543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.46  E-value=0.00033  Score=44.08  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=34.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++++|.|+ |++|..++..+...|++ |+++++++++.+.+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~   43 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRYQRLQQQ   43 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            578999998 89999999988899998 99999998876644

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.46  E-value=0.00034  Score=45.03  Aligned_cols=41  Identities=15%  Similarity=0.088  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.....|++ |+.+++++++.+.+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~~~~~~~~   47 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELLEDRLNQI   47 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999899999 99999998887654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.45  E-value=0.00036  Score=43.98  Aligned_cols=40  Identities=28%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~   50 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGAR-LILIDREAAALDR   50 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999889998 9999998876553

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.44  E-value=0.00033  Score=44.37  Aligned_cols=41  Identities=24%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~   46 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDINAEGAKAA   46 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999988776543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.44  E-value=0.00036  Score=45.11  Aligned_cols=41  Identities=17%  Similarity=0.085  Sum_probs=36.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~   56 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGAT-VIMAVRDTRKGEAA   56 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 99999999999899998 99999998877654

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.44  E-value=0.0004  Score=45.08  Aligned_cols=49  Identities=12%  Similarity=0.024  Sum_probs=39.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++.......+++++|+|+|+++.+++..+...|+++|+++.++++|.+.
T Consensus       110 ~l~~~~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~  158 (271)
T 1npy_A          110 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQY  158 (271)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            3433344567899999999999999988899998669999999887543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.44  E-value=0.0004  Score=45.10  Aligned_cols=42  Identities=17%  Similarity=0.139  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|+|+|++|..++..+...|+++|+++.++++|.+.+
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~l  160 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALAL  160 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999988899986699999998886543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.44  E-value=0.00041  Score=44.74  Aligned_cols=41  Identities=24%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHSDALQVV   72 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999988776543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.44  E-value=0.0003  Score=45.95  Aligned_cols=50  Identities=16%  Similarity=-0.003  Sum_probs=40.1

Q ss_pred             HHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         48 ACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        48 ~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++...+ -.+++++|+|+|++|.+++..+...|+++|+++.++++|.+.+
T Consensus       112 ~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          112 MLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             HHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             HHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3443343 3589999999999999999999999997699999998887543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.00034  Score=44.43  Aligned_cols=41  Identities=15%  Similarity=0.084  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   47 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYR-VVLIARSKQNLEKV   47 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999988889998 99999988876543

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.43  E-value=0.00029  Score=45.28  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r~~~~~~~~   70 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLG-VVIADLAAEKGKAL   70 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHH
Confidence            4789999998 89999999998899998 99999988876654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.42  E-value=0.00038  Score=44.48  Aligned_cols=41  Identities=7%  Similarity=0.040  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |  ++|..+++.+...|++ |+++++++++.+.+
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~   48 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYRKERSRKEL   48 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEESSGGGHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999997 5  8999999999999999 99999988776544

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.42  E-value=0.00046  Score=45.76  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=37.9

Q ss_pred             HHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC---hhhhh
Q psy16556         48 ACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV---GIRIF   95 (100)
Q Consensus        48 ~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~---~~~~~   95 (100)
                      +++.... -.+++++|+|+|++|.+++..+...|+++|+++.++   .+|.+
T Consensus       144 ~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~  195 (315)
T 3tnl_A          144 ALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAE  195 (315)
T ss_dssp             HHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH
T ss_pred             HHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHH
Confidence            4443333 368999999999999999999999999669999888   55544

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.41  E-value=0.00041  Score=44.02  Aligned_cols=41  Identities=15%  Similarity=0.041  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   49 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRDKAGAERV   49 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            4789999998 89999999999999998 99999998876654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.41  E-value=0.00029  Score=44.34  Aligned_cols=41  Identities=24%  Similarity=0.215  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRTEASLAEV   54 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecCHHHHHHH
Confidence            5789999998 89999999999999998 99999988876543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.41  E-value=0.0004  Score=45.31  Aligned_cols=41  Identities=22%  Similarity=0.200  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQPALEQA   71 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999999998 99999998876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.40  E-value=0.00036  Score=45.93  Aligned_cols=41  Identities=12%  Similarity=0.168  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .++++||.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~~~~~~~~   48 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQDSIDKA   48 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999998899998 99999998876543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.40  E-value=0.00045  Score=43.24  Aligned_cols=40  Identities=28%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++++|.|+ |.+|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   46 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVS   46 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999999998 9999888776543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.40  E-value=0.00044  Score=43.93  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   44 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAA   44 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999999998 9999898876654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.40  E-value=0.00043  Score=44.42  Aligned_cols=40  Identities=25%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~   71 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEE   71 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECChHHHHH
Confidence            4789999998 99999999998889998 9999888776553

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.40  E-value=0.00036  Score=44.67  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         53 GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        53 ~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++-.|++++|.|+ +++|..+++.....|++ |+++++++++.+.
T Consensus         7 dlf~GK~alVTGas~GIG~aia~~la~~Ga~-Vv~~~~~~~~~~~   50 (242)
T 4b79_A            7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGAE-VVALGLDADGVHA   50 (242)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTSTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHhh
Confidence            3457999999998 89999999999999999 9999998887653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.40  E-value=0.0003  Score=44.87  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .++++||.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDVEKLRAV   69 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 99999999988889998 99999988876543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.40  E-value=0.00029  Score=45.43  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~   67 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQK   67 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4789999998 99999999998889998 9999998877654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.39  E-value=0.00045  Score=44.16  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   48 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDGERLRAA   48 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999999999998 99999988876543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.39  E-value=0.00046  Score=43.93  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   46 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAH-IVLVARQVDRLHE   46 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence            4789999998 99999999999889998 9999998876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.39  E-value=0.00047  Score=43.62  Aligned_cols=40  Identities=25%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   46 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAA-VAIAARRVEKLRA   46 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            4689999998 89999999999889998 9999998877654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.39  E-value=0.00029  Score=44.87  Aligned_cols=41  Identities=12%  Similarity=0.084  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .++++||.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   46 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRTKEKLEEA   46 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999999999998 99999998876554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.39  E-value=0.0004  Score=44.77  Aligned_cols=42  Identities=17%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +..++++||.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~   63 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDAKNVSA   63 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            446889999998 89999999988889999 9999998887654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.39  E-value=0.00048  Score=43.53  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   45 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREA   45 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4688999998 99999999999899998 99998888776543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.38  E-value=0.0005  Score=44.85  Aligned_cols=41  Identities=15%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|+|+|++|..++..+...|+++|+++.++++|.+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  165 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQ  165 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence            68899999999999999998888998669999999888654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.38  E-value=0.00043  Score=44.19  Aligned_cols=42  Identities=12%  Similarity=0.065  Sum_probs=36.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.+++++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   51 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAARTVERLEDV   51 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHH
Confidence            35789999998 89999999999999998 99999988876543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.38  E-value=0.00033  Score=45.04  Aligned_cols=41  Identities=24%  Similarity=0.226  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   44 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQARIEAI   44 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            4788999998 89999999999999998 99999988876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.38  E-value=0.00048  Score=43.82  Aligned_cols=41  Identities=22%  Similarity=0.106  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .++++||.|+ |++|..+++.+...|++ |+++++++++.+..
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   48 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDIERARQA   48 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999998899998 99999888776543

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.37  E-value=0.00049  Score=44.02  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   46 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEA   46 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4689999998 89999999999999998 99999988776543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.37  E-value=0.00051  Score=44.00  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=35.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++||.|+ +++|..+++.....|++ |+++++++++.+.+
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~   42 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDK-VCFIDIDEKRSADF   42 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            478999998 89999999999999999 99999998877654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.36  E-value=0.00051  Score=43.66  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~   48 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELND   48 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999988889998 9999888876543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.36  E-value=0.00051  Score=43.86  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   52 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEA   52 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999988889998 9999998876553

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.36  E-value=0.00097  Score=40.72  Aligned_cols=84  Identities=13%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             cccceEE-ecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         12 NLSQFYK-HAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        12 ~~ae~~~-~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|.+|.. .+.+..+.+++.+++..+.. .........+. ..++++++||-+|+|. |..+..+++ .+..+|+++|.+
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~l~-~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s   92 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTTQLAMLGIE-RAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATDIS   92 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-HHHHHHHHHHH-HHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESC
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-ccHHHHHHHHH-HhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEECC
Confidence            4667766 66677777777766554321 11111111221 1256889999999976 666666665 466559999999


Q ss_pred             hhhhhhhhc
Q psy16556         91 GIRIFPYKK   99 (100)
Q Consensus        91 ~~~~~~~~~   99 (100)
                      ++..+.+++
T Consensus        93 ~~~~~~a~~  101 (205)
T 3grz_A           93 DESMTAAEE  101 (205)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988877654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.36  E-value=0.00051  Score=44.31  Aligned_cols=41  Identities=17%  Similarity=0.040  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   67 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAY-VVVADVNEDAAVRV   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999988776543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.36  E-value=0.00051  Score=44.22  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   50 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNPDKLAG   50 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999899998 9999998877654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.36  E-value=0.00036  Score=44.21  Aligned_cols=41  Identities=20%  Similarity=0.070  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~   49 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSESGAQAI   49 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999999 99999988776543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.36  E-value=0.00052  Score=43.97  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   60 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASE   60 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            35789999998 99999999999999998 9999888776543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.35  E-value=0.00054  Score=43.58  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   46 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGAR-LLLFSRNREKLEA   46 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4689999998 99999999988889998 9999898876543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.35  E-value=0.00052  Score=44.14  Aligned_cols=40  Identities=25%  Similarity=0.195  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   61 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRT   61 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999999998 9999998876543

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.34  E-value=0.00034  Score=45.14  Aligned_cols=41  Identities=10%  Similarity=-0.014  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ..+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~-V~~~~r~~~~~~~   51 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIM-VVLTCRDVTKGHE   51 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            45789999998 89999999988889998 9999998877544

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.34  E-value=0.00056  Score=43.20  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~   51 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGAR-VIIADLDEAMAT   51 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999998889998 999988877654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.34  E-value=0.00056  Score=43.53  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   51 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGAT-VAIADLDVMAAQA   51 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999999998 9999888876654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.34  E-value=0.00056  Score=43.87  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   60 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDE   60 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999999999998 9999998876543

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.34  E-value=0.00056  Score=44.14  Aligned_cols=41  Identities=22%  Similarity=0.231  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   45 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGAR-VAVLDKSAERLREL   45 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999999999998 99999988876543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.34  E-value=0.00057  Score=43.57  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   46 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKA   46 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 99999999988889998 9999888876653

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.33  E-value=0.00053  Score=43.99  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   51 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGA   51 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHH
Confidence            4789999998 89999999999999998 99999888776543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.33  E-value=0.00059  Score=43.48  Aligned_cols=40  Identities=30%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   46 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEK   46 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999999998 9999888876553

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.32  E-value=0.0006  Score=43.76  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   48 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRA   48 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999999998 9999988876654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.32  E-value=0.0004  Score=44.65  Aligned_cols=41  Identities=24%  Similarity=0.177  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+ +++|+|+|++|.+++..+...|+++|++++++++|.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            46 999999999999999999999995599999999886654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.32  E-value=0.0006  Score=43.67  Aligned_cols=40  Identities=18%  Similarity=0.162  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~   70 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEE   70 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEcCHHHHHH
Confidence            5789999998 99999999999999998 9999988876553

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.32  E-value=0.00052  Score=43.30  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   46 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESKLQEL   46 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            4788999998 99999999999999998 99999988776543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.32  E-value=0.00029  Score=45.34  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+++++++++.+..
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~   49 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDIRATLLAES   49 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999999 99999998876543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.32  E-value=0.00062  Score=43.08  Aligned_cols=40  Identities=20%  Similarity=0.201  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~   46 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGAT-VAACDLDRAAAQE   46 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHH
Confidence            4689999998 99999999988889998 9999988876553

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.32  E-value=0.00039  Score=44.42  Aligned_cols=40  Identities=25%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   49 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGAN-VAVAGRSTADIDA   49 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999999998 9999998887654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.32  E-value=0.00056  Score=44.06  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~   68 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGAR-VFICARDAEACAD   68 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999999999998 9999888876543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.00034  Score=45.25  Aligned_cols=41  Identities=17%  Similarity=0.022  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   73 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRRPDVLDAA   73 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999899998 99999988776543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.31  E-value=0.00061  Score=44.19  Aligned_cols=41  Identities=22%  Similarity=0.360  Sum_probs=35.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      -+|++++|+|+ |++|..++..+...|++ |+++++++++.+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~~~~~~  158 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQA  158 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCHHHHHH
Confidence            36899999995 99999999999999998 9999998777653

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.31  E-value=0.00065  Score=43.56  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   56 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRVERLKAL   56 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHh
Confidence            4689999998 89999999999999999 99999988876543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.00064  Score=43.97  Aligned_cols=41  Identities=22%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   68 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVT-VGALGRTRTEVEEV   68 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999988776543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.31  E-value=0.00045  Score=43.47  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~   45 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGAT-VVGTATSQASAEKF   45 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4688999998 89999999988889998 99999988776543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.31  E-value=0.00044  Score=45.06  Aligned_cols=41  Identities=22%  Similarity=0.119  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   81 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGAN-VAVAARSPRELSSV   81 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999999998 99999988776543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.30  E-value=0.00054  Score=42.75  Aligned_cols=39  Identities=10%  Similarity=0.067  Sum_probs=33.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |++|..++..+...|++ |+++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   41 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKA-TYLTGRSESKLSTV   41 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            46899998 89999999999999999 99999998877654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.30  E-value=0.00041  Score=44.40  Aligned_cols=41  Identities=24%  Similarity=0.129  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999999999998 99999988776543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.29  E-value=0.00079  Score=39.58  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC-hhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV-GIRI   94 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~-~~~~   94 (100)
                      .++++|+|+|.+|...++.+...|.+ |++++++ +++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~-V~vid~~~~~~~   40 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLPEDDI   40 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEECCChHHH
Confidence            46799999999999999999999998 9999887 4433

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.29  E-value=0.00068  Score=43.20  Aligned_cols=40  Identities=23%  Similarity=0.100  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      -.+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~   45 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGV   45 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEECCHHHHH
Confidence            35789999998 99999999999999998 999988877653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.29  E-value=0.00045  Score=43.94  Aligned_cols=41  Identities=17%  Similarity=0.053  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   52 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKSEGAEAV   52 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999988889999 99999988776543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.29  E-value=0.00064  Score=43.04  Aligned_cols=40  Identities=15%  Similarity=0.084  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   51 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEA   51 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcHhHHH
Confidence            4789999998 99999999999999998 8889888776543

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.29  E-value=0.00074  Score=42.41  Aligned_cols=39  Identities=18%  Similarity=0.133  Sum_probs=33.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..++..+...|++ |+++++++++.+.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   41 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDR-VAALDLSAETLEE   41 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            578999998 99999999988889998 9999888776543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.28  E-value=0.00046  Score=43.25  Aligned_cols=40  Identities=20%  Similarity=0.187  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~   46 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGTSGERAKA   46 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCChHHHHH
Confidence            4688999998 99999999988889998 9999888776543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00037  Score=45.07  Aligned_cols=41  Identities=24%  Similarity=0.248  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   48 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARNGNALAEL   48 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999999998 99999988776543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.28  E-value=0.0005  Score=43.70  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~   52 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAH-VVVSSRKQENVD   52 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4789999998 99999999999899998 999988887654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.27  E-value=0.00051  Score=42.94  Aligned_cols=41  Identities=22%  Similarity=0.042  Sum_probs=34.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC--CcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYG--ARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g--~~~v~~~~~~~~~~~~~~   98 (100)
                      +++++|.|+ |++|..+++.+...|  .+ |+++++++++.+.++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~-V~~~~r~~~~~~~l~   46 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRH-IIATARDVEKATELK   46 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCE-EEEEESSGGGCHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcE-EEEEecCHHHHHHHH
Confidence            578999998 999999999988899  77 999999887765443

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.26  E-value=0.00075  Score=43.62  Aligned_cols=39  Identities=10%  Similarity=0.056  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..++..+...|++ |+++++++++.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r~~~~~~   64 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLK   64 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4689999998 99999999999899998 999988887654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.00058  Score=43.35  Aligned_cols=40  Identities=13%  Similarity=-0.041  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   46 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKPPAGEE   46 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSCC----
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHH
Confidence            5789999998 89999999999999998 9999888776543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.26  E-value=0.00053  Score=43.60  Aligned_cols=40  Identities=20%  Similarity=0.053  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   44 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGAT-VYITGRHLDTLRV   44 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4688999998 89999999999999998 9999888876643

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.26  E-value=0.00075  Score=42.79  Aligned_cols=39  Identities=21%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   41 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKA   41 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            578999998 99999999999999998 9999888876543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.26  E-value=0.00076  Score=43.67  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~   56 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLK   56 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4689999998 99999999998889998 999988877654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.25  E-value=0.00052  Score=43.15  Aligned_cols=40  Identities=15%  Similarity=0.031  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   45 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEK   45 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4688999998 99999999998889998 9999888776543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.25  E-value=0.00068  Score=43.59  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~   66 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCH-TVIASRSLPRVLT   66 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            5789999998 89999999999899998 9999888776543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.25  E-value=0.00047  Score=44.42  Aligned_cols=40  Identities=18%  Similarity=0.107  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~   72 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAH-VILHGVKPGSTAA   72 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSTTTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHH
Confidence            5789999998 89999999999999998 9999988876554

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.25  E-value=0.00042  Score=46.14  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      -+|+|+|+|+.|++++..++..|.+ |.+++++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence            3799999999999999999999998 899887543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.24  E-value=0.00061  Score=43.69  Aligned_cols=41  Identities=20%  Similarity=0.007  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   45 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDT-VIGTARRTEALDDL   45 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4688999998 99999999999999998 99999988776543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.24  E-value=0.00067  Score=46.46  Aligned_cols=43  Identities=21%  Similarity=0.203  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+.+|+|+|.|.+|..+++.++..|.+ |++++.++++.+.+++
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~~v~~~~~   45 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPDHIETLRK   45 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHh
Confidence            356799999999999999999999999 9999999999887654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.24  E-value=0.0018  Score=44.12  Aligned_cols=51  Identities=16%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         40 EPLAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        40 ~~~~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ...+..+.+++..+ --.+.+|+|+|+|..|..+++++..+|.++|+++|++
T Consensus       174 V~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          174 VVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             HHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34444455555444 3367899999999999999999999999889999987

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.24  E-value=0.00053  Score=43.93  Aligned_cols=40  Identities=15%  Similarity=0.167  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   45 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEE   45 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4688999998 99999999988889998 9999998876553

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.23  E-value=0.00057  Score=44.02  Aligned_cols=41  Identities=15%  Similarity=-0.085  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.....|++ |+++++++++.+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~-Vv~~~r~~~~~~~~   47 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAI-PVVFARHAPDGAFL   47 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCcccHHHH
Confidence            5899999998 89999999999999999 88888887765543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.23  E-value=0.00055  Score=44.01  Aligned_cols=40  Identities=18%  Similarity=0.007  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~   67 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAM-VIGTATTEAGAEG   67 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            5789999998 89999999998899998 9999998877654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.23  E-value=0.00054  Score=44.06  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   45 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEE   45 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4688999998 89999999998889998 9999998876654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.23  E-value=0.00048  Score=43.34  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~   49 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAAN   49 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHH
Confidence            4689999998 99999999998889998 999988877654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.23  E-value=0.00056  Score=43.74  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~   49 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRREENVNE   49 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4789999998 89999999998899998 9999998876543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.22  E-value=0.00051  Score=44.36  Aligned_cols=41  Identities=20%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~   69 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADIDGDAADAA   69 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            4789999998 89999999998899998 99999988776543

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.22  E-value=0.00056  Score=44.22  Aligned_cols=41  Identities=17%  Similarity=0.084  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|+|+|++|..++..+...|.+ |++++++++|.+.+
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~-v~v~~R~~~~a~~l  158 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQN-IVLANRTFSKTKEL  158 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            578999999999999999988899965 99999998876543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.22  E-value=0.00062  Score=42.44  Aligned_cols=40  Identities=25%  Similarity=0.213  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   44 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYR-VGLMARDEKRLQA   44 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            3578999998 99999999999889998 9999888876654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.22  E-value=0.00032  Score=45.72  Aligned_cols=41  Identities=15%  Similarity=0.004  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|+|+|++|..++..+...|+++|+++.++++|.+.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            57899999999999999999999999559999999887654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.21  E-value=0.00054  Score=43.43  Aligned_cols=40  Identities=18%  Similarity=0.166  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~   45 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQ   45 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4688999998 99999999998889998 9999888876654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.21  E-value=0.00064  Score=43.61  Aligned_cols=41  Identities=24%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~   67 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTREDKLKEI   67 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 88898888776543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.21  E-value=0.00077  Score=43.68  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|.|+|+|.+|..+++.+...|.+ |++.++++++.+.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~   44 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFA-VTAYDINTDALDAAK   44 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHH
Confidence            6899999999999999999999998 999999998876553

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.20  E-value=0.0011  Score=40.86  Aligned_cols=49  Identities=20%  Similarity=0.146  Sum_probs=40.8

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+....+.++++||-+|+|. |..++.+++. +.+ |+++|.+++..+.+++
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~~-v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GGR-AITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TCE-EEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CCE-EEEEeCCHHHHHHHHH
Confidence            44667888999999999986 8888888888 776 9999999998887754

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.20  E-value=0.00047  Score=44.36  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGAR-ILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5789999998 89999999999999998 99999888776543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.19  E-value=0.00076  Score=42.69  Aligned_cols=39  Identities=15%  Similarity=0.028  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKA-YGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+.. .|++ |+++++++++.+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~-V~~~~r~~~~~~   43 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQ   43 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCe-EEEEeCChHHHH
Confidence            5789999998 9999999888887 8998 999988877654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.19  E-value=0.001  Score=42.25  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~   42 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEG   42 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhH
Confidence            4789999998 99999999998899998 9999888776

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.19  E-value=0.00078  Score=43.35  Aligned_cols=38  Identities=18%  Similarity=0.103  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++++++...
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~   68 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAH-VLAWGRTDGVK   68 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCHHHHH
Confidence            4789999998 89999999999999998 88888654433

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.19  E-value=0.00065  Score=43.14  Aligned_cols=40  Identities=23%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~   53 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNE   53 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4688999998 99999999999899998 9999888776543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.19  E-value=0.00061  Score=43.87  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   68 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRLDALQET   68 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5788999998 89999999999999998 99999988876543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.19  E-value=0.0011  Score=42.33  Aligned_cols=39  Identities=18%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~   54 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQ   54 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCChhHHH
Confidence            4789999998 99999999988889998 888888876654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.18  E-value=0.001  Score=43.20  Aligned_cols=40  Identities=18%  Similarity=0.098  Sum_probs=35.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++++|+|+|++|.+++..+...| .+|+++.++++|.+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~l  157 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFF  157 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH
Confidence            899999999999999999999999 4599999998887543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.18  E-value=0.00063  Score=44.29  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~   65 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEE   65 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH
Confidence            4788999998 89999999999899998 9999998876653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.18  E-value=0.0011  Score=41.98  Aligned_cols=40  Identities=25%  Similarity=0.213  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .-.+++++|.|+ |++|..+++.+...|++ |++++++++..
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~   56 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELL   56 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHH
Confidence            346899999998 99999999998889998 99998887543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.17  E-value=0.00094  Score=40.94  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +|+|+|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~   39 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHE-VTAIVRNAGKITQ   39 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCSHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCE-EEEEEcCchhhhh
Confidence            6999998 99999999999999988 9999998877653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.16  E-value=0.0007  Score=43.28  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +.+|+|+|+|++|..+++.+...|..+++++|.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999999997799998876

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.16  E-value=0.0011  Score=43.19  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .++++|||.|+ |.+|..++..+...|.+ |+++++++++.+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~   49 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLA   49 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCcccHH
Confidence            46789999998 99999999988888988 999988876644

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.14  E-value=0.00096  Score=41.77  Aligned_cols=51  Identities=12%  Similarity=0.113  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++...++++++||.+|+| .|..+..+++..+.+ |++++.+++..+.+++
T Consensus        82 ~~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~~-v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           82 IMLEIANLKPGMNILEVGTG-SGWNAALISEIVKTD-VYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCSC-EEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCCE-EEEEeCCHHHHHHHHH
Confidence            34466678899999999998 688888899888745 9999999988777654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.14  E-value=0.00074  Score=42.48  Aligned_cols=39  Identities=26%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC-hhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV-GIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~-~~~~~   95 (100)
                      .+++++|.|+ |++|..++..+...|++ |++++++ +++.+
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   46 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRKAPANID   46 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCCTTHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCCchhhHH
Confidence            4688999998 99999999988889998 8888887 65544

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.14  E-value=0.00079  Score=42.46  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~   43 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNYAGNEQKAN   43 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHH
Confidence            4688999998 99999999999999998 888877 666554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.13  E-value=0.0022  Score=39.12  Aligned_cols=51  Identities=12%  Similarity=-0.020  Sum_probs=41.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+....++++++||-+|+|. |..++.+++.....+|+++|.+++..+.+++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            34667888999999999985 8888888888644559999999998887754

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.13  E-value=0.00076  Score=43.13  Aligned_cols=40  Identities=13%  Similarity=0.029  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   51 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQR   51 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHH
Confidence            4688999998 89999999998889998 999888 7766543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.12  E-value=0.00085  Score=42.52  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~   59 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRENPN   59 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCTT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcccc
Confidence            4789999998 89999999999999998 99998887654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.12  E-value=0.0012  Score=40.61  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +|+|.|+ |.+|..+++.+...|.+ |+++++++++.+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~   39 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHE-VLAVVRDPQKAAD   39 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCE-EEEEEeccccccc
Confidence            6999998 99999999999989988 9999999887654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.12  E-value=0.00083  Score=42.82  Aligned_cols=41  Identities=12%  Similarity=0.114  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIFP   96 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~~   96 (100)
                      ..+++++|.|+ |++|..+++.+...|++ |+++ ++++++.+.
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~~~~~~~   44 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARSKKAALE   44 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHH
Confidence            35789999998 89999999999999999 6665 677766543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.12  E-value=0.0012  Score=41.70  Aligned_cols=38  Identities=16%  Similarity=0.124  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh-hhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG-IRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~-~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++ ++.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~   45 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEA   45 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCchhHH
Confidence            4789999998 89999999999899998 88888887 554

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.11  E-value=0.00075  Score=42.89  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~   40 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAA   40 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCcch
Confidence            4688999998 89999999999999998 8888888766

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.08  E-value=0.0013  Score=41.79  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=31.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~   38 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADLPQQE   38 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECGGGH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcch
Confidence            678999998 89999999888888998 8888888766

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.08  E-value=0.00081  Score=44.41  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+|+.|++++..+...|.+ |+++++.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~-V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLK-TLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            389999999999999999999999 99998754

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.08  E-value=0.00097  Score=42.16  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~   46 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEAN   46 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCCChHHHH
Confidence            4688999998 99999999988889998 888888 665543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.08  E-value=0.00094  Score=41.98  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ..+++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~   43 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENE   43 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCChhh
Confidence            45789999998 89999999999889998 8888887655

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.07  E-value=0.00089  Score=42.98  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++++|.|+ +++|..+++.+...|++ |+++++++++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~   42 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGAN-VAIAAKSAVA   42 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeccchh
Confidence            5789999998 89999999998899998 9999888764

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.07  E-value=0.0013  Score=43.40  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~  177 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMN-ILLYDPYPNE  177 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCH
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCE-EEEECCCCCh
Confidence            478999999999999999999999998 9999888765

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.07  E-value=0.0016  Score=41.86  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      -.|++++|.|+ |++|..+++.+...|++ |+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEec
Confidence            35789999998 89999999999999998 888876

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.07  E-value=0.001  Score=42.90  Aligned_cols=39  Identities=13%  Similarity=-0.081  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~   82 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCD   82 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHH
Confidence            4689999998 99999999988888998 888887776654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.06  E-value=0.00069  Score=42.41  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=32.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~   40 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQ   40 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecCcccc
Confidence            578999998 99999999999999998 88888877653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.06  E-value=0.0014  Score=44.12  Aligned_cols=39  Identities=15%  Similarity=0.313  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.++++|+|+|+|.+|.++++.++.+|.+ |++++.+++
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~-viv~d~~~~   46 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYK-VVVLDPSED   46 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCC
Confidence            356789999999999999999999999998 888887654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.05  E-value=0.00095  Score=42.47  Aligned_cols=41  Identities=34%  Similarity=0.354  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-C-HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-G-PIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G-~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ | ++|..+++.+...|++ |+++++++++.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~   63 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHERRLGET   63 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCHHHHHHH
Confidence            5789999998 7 7999999988889999 99999988776543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.05  E-value=0.0017  Score=43.03  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAY-GARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~-g~~~v~~~~~~~~~~~~   96 (100)
                      .-.+++|||.|+ |.+|..+++.+... |..+|+++++++++.+.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~   62 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSE   62 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHH
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHH
Confidence            345789999998 99999998888877 98449999998876543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.04  E-value=0.0014  Score=41.68  Aligned_cols=40  Identities=15%  Similarity=0.065  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GP--IGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~--~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |.  +|..+++.+...|++ |++++++++..+.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~   48 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGERLEKS   48 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCchHHHHH
Confidence            5789999997 66  999999888889998 8888887654443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.03  E-value=0.0013  Score=42.80  Aligned_cols=41  Identities=12%  Similarity=0.044  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |  ++|..+++.+...|++ |++++++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCChHHHHHH
Confidence            5789999998 6  9999999998899999 99998887654433

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.03  E-value=0.0011  Score=42.03  Aligned_cols=39  Identities=21%  Similarity=0.077  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~   60 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAE   60 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHH
Confidence            4789999998 99999999999889998 888877 665543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.02  E-value=0.00094  Score=43.09  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh-hhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG-IRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~-~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++ ++.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~   62 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYHNSAEAAV   62 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeCCchHHHH
Confidence            4788999998 89999999988889998 88888887 5543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.02  E-value=0.0019  Score=41.45  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++||.|+ |++|..+++.+...|++ |++++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEccc
Confidence            5789999998 89999999999999999 8888776

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.01  E-value=0.00066  Score=43.09  Aligned_cols=40  Identities=13%  Similarity=0.008  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcC---CcEEEEEecChhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYG---ARVICVCKYVGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g---~~~v~~~~~~~~~~~   95 (100)
                      -.+++++|.|+ |++|..+++.+...|   .+ |+++++++++.+
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~-V~~~~r~~~~~~   62 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQH-LFTTCRNREQAK   62 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSE-EEEEESCTTSCH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcE-EEEEecChhhhH
Confidence            45789999998 999999999988889   66 999988876544

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.0018  Score=41.82  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~   64 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGAN-IVLNGFGAPDEIR   64 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEECCCCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHH
Confidence            4689999998 89999999999999998 888887 444443

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.00  E-value=0.0012  Score=42.73  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++ +++++.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~r~~~~~~~   49 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANA   49 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEcCCCHHHHHH
Confidence            4688999998 89999999999999998 98988 88776543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.00  E-value=0.002  Score=41.25  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++||.|+ |++|..+++.+...|++ |++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecc
Confidence            5789999998 89999999999999999 8888876

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.00  E-value=0.0013  Score=41.80  Aligned_cols=38  Identities=26%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~   58 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDK-VAITYRSGEPP   58 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHhh
Confidence            4789999998 99999999999999998 88888876654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.99  E-value=0.0023  Score=39.85  Aligned_cols=39  Identities=18%  Similarity=-0.101  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAY--GARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~--g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |.+|..+++.+...  |.+ |+++++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~-V~~~~r~~~~~~   44 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQGKE   44 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCE-EEEEESCHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcE-EEEEEcCCCchh
Confidence            4678999998 99999999988888  677 999988877654

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.99  E-value=0.0013  Score=41.44  Aligned_cols=41  Identities=10%  Similarity=0.043  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+++++|.|+ |++|..+++.+.. |.+ |+++++++++.+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~-v~~~~r~~~~~~~~~   45 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHI-VYALGRNPEHLAALA   45 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCe-EEEEeCCHHHHHHHH
Confidence            4688999998 8999998777655 877 999999888776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.98  E-value=0.0012  Score=40.91  Aligned_cols=38  Identities=3%  Similarity=-0.043  Sum_probs=34.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+|+|+|.+|..+++.+...|.+ |+++++++++.+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~-v~vid~~~~~~~~l   39 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG-VVIINKDRELCEEF   39 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC-EEEEESCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHH
Confidence            589999999999999999999998 99999999887654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.98  E-value=0.0014  Score=41.06  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=32.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCc------EEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGAR------VICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~------~v~~~~~~~~~~~~   96 (100)
                      +++++|.|+ |++|..+++.+...|..      +|+++++++++.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~   48 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEK   48 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHH
Confidence            568999998 99999998888888982      39999888776654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.98  E-value=0.00086  Score=42.55  Aligned_cols=40  Identities=10%  Similarity=-0.052  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH---cCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKA---YGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~---~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+..   .|++ |+++++++++.+.
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~-V~~~~r~~~~~~~   48 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQ   48 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCe-EEEEeCCHHHHHH
Confidence            3678999998 8999998887777   7998 9999998876554

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.98  E-value=0.0013  Score=43.46  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~~~~   96 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++ +++++.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~-Vv~~~~r~~~~~~~   86 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANA   86 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHH
Confidence            5788999998 89999999999999998 88888 88776544

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.97  E-value=0.0013  Score=42.00  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~   62 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRS   62 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5789999998 89999999988899998 8888874

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.97  E-value=0.0013  Score=42.54  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++++|+|+|.+|..++..+...|.+ |++.++++++.+.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~~-V~v~~r~~~~~~~  167 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGAK-VFLWNRTKEKAIK  167 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCCE-EEEEECCHHHHHH
Confidence            578999999999999999998888984 9999999887654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.97  E-value=0.0019  Score=39.03  Aligned_cols=37  Identities=24%  Similarity=0.306  Sum_probs=32.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++|.|+ |.+|..+++.+...|.+ |+++++++++.+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~-V~~~~r~~~~~~   41 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRLP   41 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGSC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCe-EEEEEeChhhcc
Confidence            68999998 99999999999888987 999988877643

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.97  E-value=0.0022  Score=41.30  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++++|.|+ +++|..+++.+...|++ |++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEecc
Confidence            5789999998 89999999999999999 8888776

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.97  E-value=0.00082  Score=42.47  Aligned_cols=39  Identities=26%  Similarity=0.181  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~   53 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPK   53 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHH
Confidence            4788999998 99999999998889998 888888776543

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.97  E-value=0.0017  Score=40.71  Aligned_cols=36  Identities=22%  Similarity=0.155  Sum_probs=31.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~-V~~~~r~~~~   38 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYR-VAIASRNPEE   38 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHH
Confidence            578999998 99999999999999998 9998888765

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.96  E-value=0.0017  Score=44.41  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.++++|+|+|+|.+|..+++.++.+|.+ |++++.+++
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~-v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYR-VAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCc
Confidence            466899999999999999999999999999 888876544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.96  E-value=0.0015  Score=38.76  Aligned_cols=50  Identities=8%  Similarity=-0.036  Sum_probs=40.7

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++...+.++++||-+|+|. |..+..+++..+..+|+++|.+++..+.+++
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3556788999999999986 8888888888754459999999988877653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.95  E-value=0.0013  Score=42.00  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~   64 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTEHAS   64 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESSCCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCChHHH
Confidence            4688999998 89999999998899999 99998887653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.95  E-value=0.0021  Score=40.93  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~   95 (100)
                      .|++++|.|+ |++|..+++.+...|++ |+++ .+++++.+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~   47 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGAAEGAA   47 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSSCHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence            5789999998 89999999999899999 7776 55554433

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.94  E-value=0.0024  Score=40.94  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|++++|.|+ +++|..+++.+...|++ |+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEec
Confidence            5789999998 89999999999999998 888876

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.94  E-value=0.0012  Score=42.34  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         53 GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        53 ~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ....++++||.|+ |++|..+++.+...|++ |+++++++++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~   50 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAK-VVSVSLDEKS   50 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCC--
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchh
Confidence            3456899999998 89999999999899999 8888877654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.94  E-value=0.0026  Score=38.90  Aligned_cols=49  Identities=14%  Similarity=0.207  Sum_probs=39.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .++...++++++||-+|+|. |..+..+++. +.+ |+++|.+++..+.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~~-v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQH-VCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SSE-EEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CCE-EEEEecCHHHHHHHHH
Confidence            34667788999999999984 7777778877 665 9999999998877654

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.94  E-value=0.0014  Score=41.34  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCcchh
Confidence            4678999998 99999999988889998 8888886544

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.93  E-value=0.0013  Score=42.75  Aligned_cols=40  Identities=8%  Similarity=0.063  Sum_probs=34.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|+|+|++|..++..+...| + |+++++++++.+.+
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~-V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-N-IIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-E-EEEECSSHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-C-EEEEECCHHHHHHH
Confidence            5789999999999999999988899 5 99999988776543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.0025  Score=41.08  Aligned_cols=40  Identities=20%  Similarity=0.103  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      ..+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~   68 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIGDAEGVA   68 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCCCHHHHH
Confidence            35789999998 89999999999999998 888874 555443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.93  E-value=0.0023  Score=41.45  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++||.|+ |++|..+++.+...|++ |+++++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~   83 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYLDEEG   83 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchH
Confidence            5789999998 89999999999999998 8888877653

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.93  E-value=0.0015  Score=40.94  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++ .+++++.
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~~r~~~~~   43 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNGSPASTSL   43 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECTTCSHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCcCHHHH
Confidence            4688999998 99999999999999998 8877 5555543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.93  E-value=0.0019  Score=42.09  Aligned_cols=48  Identities=10%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..+++++++||-+|+|. |..+..+++..|.+ |+++|.+++..+.+++
T Consensus        84 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIGCGW-GTTMRRAVERFDVN-VIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             TTSCCCTTCEEEEESCTT-SHHHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HhcCCCCcCEEEEEcccc-hHHHHHHHHHCCCE-EEEEECCHHHHHHHHH
Confidence            556788999999999987 77888888887886 9999999988877653

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.92  E-value=0.0025  Score=40.87  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGAD-IAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            5789999998 89999999999999999 8888876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.92  E-value=0.002  Score=42.78  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .|++|.|+|.|.+|..+++.++..|.+ |++.++++++.+.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~  193 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQ-RFLYTGRQPRPEE  193 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCC-EEEEESSSCCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCcchhH
Confidence            478999999999999999999999998 9999887765443

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.92  E-value=0.001  Score=42.59  Aligned_cols=39  Identities=21%  Similarity=0.101  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..++..+...|++ |+++++++++.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~   72 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGAD-VAIWYNSHPADE   72 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCE-EEEEESSSCCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH
Confidence            4789999998 89999998888888998 888888776544

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.92  E-value=0.0013  Score=40.94  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--cEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGA--RVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~--~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |.+|..+++.+...|.  + |+++++++++.
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~-V~~~~r~~~~~   57 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSK-VTLIGRRKLTF   57 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSE-EEEEESSCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCE-EEEEEcCCCCc
Confidence            3678999998 9999999998888898  7 99988877654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.92  E-value=0.003  Score=38.72  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++...+.++++||.+|+| .|..+..+++..|. .+|++++.+++..+.+++
T Consensus        68 ~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           68 MMCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            34466678899999999998 48888888888762 349999999988777653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.91  E-value=0.0018  Score=39.91  Aligned_cols=38  Identities=21%  Similarity=0.109  Sum_probs=32.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH-HcCCcEEEEEecChh-hhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAK-AYGARVICVCKYVGI-RIFP   96 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~-~~g~~~v~~~~~~~~-~~~~   96 (100)
                      ++++|.|+ |.+|..+++.+. ..|.+ |++++++++ +.+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~-V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMH-ITLYGRQLKTRIPP   46 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCE-EEEEESSHHHHSCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCce-EEEEecCccccchh
Confidence            56999998 999999988887 89998 999999887 6543

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.91  E-value=0.00085  Score=42.30  Aligned_cols=40  Identities=15%  Similarity=0.007  Sum_probs=33.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-e--cChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVC-K--YVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~--~~~~~~~~~   97 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++ +  +++++.+.+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~r~~~~~~~~   44 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYT-VVCHDASFADAAERQRF   44 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCcCCHHHHHHH
Confidence            468999998 89999999999999998 8888 6  887766543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.90  E-value=0.0024  Score=43.00  Aligned_cols=39  Identities=26%  Similarity=0.328  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.++++|+|+|+|.+|..+++.++.+|.+ |++++.+++
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~-vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGYK-IAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEeCCCC
Confidence            356889999999999999999999999999 888887653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.90  E-value=0.0026  Score=41.30  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++++|.|+ +++|..+++.+...|++ |++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence            5789999998 89999999999999999 8888776

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.90  E-value=0.0045  Score=42.28  Aligned_cols=55  Identities=24%  Similarity=0.175  Sum_probs=41.2

Q ss_pred             hhcchhHHHHHHHHHhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         36 GALLEPLAVGVHACKRSGVG-LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        36 aa~~~~~~ta~~~~~~~~~~-~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ......++.-+.+++..+.+ +..+|+|+|+|..|..+++++..+|+++|+.+|++
T Consensus       166 GTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          166 GTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            33334444455566554433 45789999999999999999999999779999876

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.90  E-value=0.0024  Score=41.05  Aligned_cols=40  Identities=18%  Similarity=0.100  Sum_probs=34.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC--cEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA--RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~--~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|...++.++..|.  + |++.++++++.+.++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~   43 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAV   43 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHH
Confidence            378999999999999999988887  5 999999988877654

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.90  E-value=0.0012  Score=40.64  Aligned_cols=36  Identities=8%  Similarity=0.131  Sum_probs=31.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +|+|.|+ |.+|..+++.+...|.+ |+++++++++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~   38 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQ-IYAGARKVEQVP   38 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCE-EEEEESSGGGSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCccchh
Confidence            6999998 99999999999999988 999999887653

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.90  E-value=0.0018  Score=43.07  Aligned_cols=34  Identities=9%  Similarity=0.155  Sum_probs=30.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ++|+|+|+|..|..+++.||.+|.+ +++++.+++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~-vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMK-VVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCC
Confidence            5899999999999999999999999 888887765

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.89  E-value=0.0035  Score=39.54  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ |++|..+++.+...|+++|+++++++
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~   40 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc
Confidence            4689999998 99999999999999997577777765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.89  E-value=0.0025  Score=41.27  Aligned_cols=48  Identities=15%  Similarity=0.113  Sum_probs=40.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..+++++++||-+|+|. |..+..+++..|.+ |+++|.+++..+.+++
T Consensus        66 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           66 DKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDVN-VIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCE-EEEEECCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEeeccC-cHHHHHHHHhCCCE-EEEEECCHHHHHHHHH
Confidence            667789999999999986 78888899988876 9999999988877653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.88  E-value=0.0018  Score=42.07  Aligned_cols=40  Identities=20%  Similarity=0.065  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         55 GLGTSVLVLSA-GP--IGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~--~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      -.|++++|.|+ |.  +|..+++.+...|++ |++++++++..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~~~~~   71 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGDALKK   71 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHH
Confidence            45789999997 66  999999999999998 888888865443

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.88  E-value=0.0021  Score=41.10  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~   43 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSK-VIDLSIHDP   43 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEecCcc
Confidence            4689999998 99999999999999998 888887754

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.0017  Score=42.09  Aligned_cols=42  Identities=17%  Similarity=0.070  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--cEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGA--RVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~--~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|.|+ |++|..+++.+...|+  .+|+.+++++++.+.+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~   76 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEEL   76 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHH
Confidence            4689999998 8999998877776676  1399999988876554

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.88  E-value=0.0017  Score=41.46  Aligned_cols=35  Identities=6%  Similarity=0.055  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ +++|..+++.+...|++ |++++++.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~   45 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQA   45 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCc
Confidence            4789999998 89999999999899998 88876543

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.88  E-value=0.0013  Score=41.74  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~   39 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGAN-IVLNGFGDP   39 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCch
Confidence            4688999998 99999999999889998 888887765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.87  E-value=0.0018  Score=41.47  Aligned_cols=39  Identities=26%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~   67 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAK-VAVNYASSAGAAD   67 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCChHHHH
Confidence            5789999998 89999999999999999 777766 444443

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.87  E-value=0.0014  Score=40.99  Aligned_cols=38  Identities=16%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~   95 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++ ++++++.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~-v~~~~~r~~~~~~   40 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFA-LAIHYGQNREKAE   40 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESSCHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence            468999998 99999999998889998 7777 77776654

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.86  E-value=0.0017  Score=40.61  Aligned_cols=38  Identities=21%  Similarity=0.165  Sum_probs=31.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICV-CKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~~   95 (100)
                      |++++|.|+ |++|..+++.+...|++ |++ ..+++++.+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~-v~~~~~r~~~~~~   40 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAE   40 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence            578999998 99999999999999998 777 467766554

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.86  E-value=0.0023  Score=44.72  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .-.|++|.|+|.|.+|..+++.++.+|++ |+++++++.+.
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~-Viv~d~~~~~~  293 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGAR-VYITEIDPICA  293 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSCHHHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcCE-EEEEeCChhhH
Confidence            45799999999999999999999999998 99999988764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.85  E-value=0.0014  Score=42.36  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ +++|..+++.+...|++ |+++++++++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~   45 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGAN-VALVAKSAEP   45 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCE-EEEEESCCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECChhh
Confidence            4789999998 89999999998889998 9999888764

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.85  E-value=0.001  Score=42.18  Aligned_cols=39  Identities=10%  Similarity=-0.015  Sum_probs=33.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~   41 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKDEL   41 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            46899998 89999999999999998 99998887766543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.83  E-value=0.0026  Score=40.62  Aligned_cols=39  Identities=18%  Similarity=0.026  Sum_probs=33.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+|+|.|+|.+|..++..+...|.+ |+++++++++.+.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~   44 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWR-IIGTSRNPDQMEAI   44 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCE-EEEEESCGGGHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCE-EEEEEcChhhhhhH
Confidence            6899999999999999999888998 99999988776543

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.0013  Score=40.55  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=32.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+|+|.|+ |.+|..+++.+...|.+ |+++++++++.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~   42 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFE-VTAVVRHPEKIK   42 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCE-EEEECSCGGGCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCE-EEEEEcCcccch
Confidence            68999998 99999999999999987 999999887653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.82  E-value=0.0027  Score=41.35  Aligned_cols=39  Identities=18%  Similarity=0.155  Sum_probs=33.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++|.|+|+|.+|..+++.+...|.+ |+++++++++.+.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHH
Confidence            6799999999999877777777987 99999998877653

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.82  E-value=0.0018  Score=41.72  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|++++|.|+ +++|+.+++.+...|++ |++++++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQ-VLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCE-EEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCE-EEEEECCch
Confidence            6899999998 89999999999999999 888887654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.81  E-value=0.0024  Score=41.71  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ..+.+|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~   41 (341)
T 3enk_A            3 STKGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNS   41 (341)
T ss_dssp             CSSCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSS
T ss_pred             CCCcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcc
Confidence            35679999998 99999999999999998 8888876554

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.81  E-value=0.0021  Score=41.85  Aligned_cols=40  Identities=18%  Similarity=-0.010  Sum_probs=30.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         53 GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        53 ~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +..++.+|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~   50 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARRSS   50 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSS
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcc
Confidence            4567899999998 99999999988888987 8888876553

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.81  E-value=0.002  Score=42.87  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++.
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~  173 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGMH-VIGVNTTGHPA  173 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSCCCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCCE-EEEECCCcchh
Confidence            478999999999999999999999998 99998876543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.80  E-value=0.0014  Score=41.48  Aligned_cols=39  Identities=18%  Similarity=0.081  Sum_probs=32.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++++.+.+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   40 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQEL   40 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            46889998 89999999998889998 99999988776543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.80  E-value=0.003  Score=41.66  Aligned_cols=42  Identities=17%  Similarity=0.086  Sum_probs=36.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecChhhhhhhhc
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~   99 (100)
                      .+|.|+|.|.+|...++.++..|.. +|++.++++++.+.+++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~   76 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   76 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            6899999999999999999999982 39999999988776543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.79  E-value=0.0022  Score=40.98  Aligned_cols=43  Identities=21%  Similarity=0.043  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhhh
Q psy16556         53 GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIFP   96 (100)
Q Consensus        53 ~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~~   96 (100)
                      .+..+++++|.|+ |++|..+++.+...|++ |+++ .+++++.+.
T Consensus        22 ~m~~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~~~~~~~~   66 (272)
T 4e3z_A           22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAANREAADA   66 (272)
T ss_dssp             --CCSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             hccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCChhHHHH
Confidence            3456789999998 89999999999999999 6555 666665543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.79  E-value=0.0015  Score=43.55  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++++|.|+ +++|..+++.+...|++ |+++++++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~-Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGAN-IVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCE-EEEEECChhh
Confidence            5789999998 89999999998889998 8888888765

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.79  E-value=0.0023  Score=41.73  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=31.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +++|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~   39 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYE-VYGADRRSGE   39 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCCST
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCCcc
Confidence            578999998 99999999888888988 9998887654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.78  E-value=0.0029  Score=42.12  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++..|.+ |++.++++++
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~  185 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMR-ILYYSRTRKE  185 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCE-EEEECCCcch
Confidence            478999999999999999999999998 9999988766

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.78  E-value=0.0014  Score=42.20  Aligned_cols=38  Identities=11%  Similarity=0.088  Sum_probs=33.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~-V~~~~r~~~~~~~   60 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWS-LVLTGRREERLQA   60 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            78999998 89999999999899998 9999998877654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.0015  Score=41.62  Aligned_cols=38  Identities=16%  Similarity=0.036  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~   65 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYR-VVATSRSIKPS   65 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhhc
Confidence            4789999998 89999999999999998 99888876543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.78  E-value=0.0036  Score=38.91  Aligned_cols=41  Identities=15%  Similarity=0.053  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ...++.|+|+|.+|...+..+...|.+ |++.++++++.+.+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~-V~~~~r~~~~~~~~   67 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFK-VVVGSRNPKRTARL   67 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSHHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            346899999999999998888888987 99999998877654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.77  E-value=0.0032  Score=40.26  Aligned_cols=39  Identities=28%  Similarity=0.367  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .| +++|+|+|.+|..++..+...|.+ |++.++++++.+.
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~-v~v~~r~~~~~~~  154 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLE-VWVWNRTPQRALA  154 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            46 999999999999999999999995 9999998877543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.77  E-value=0.0026  Score=41.99  Aligned_cols=38  Identities=24%  Similarity=0.373  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++.
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~  178 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMK-VLAYDILDIRE  178 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCE-EEEECSSCCHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCCcchh
Confidence            578999999999999999999999998 99998887654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.77  E-value=0.002  Score=40.61  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~   37 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchh
Confidence            47899998 99999999998889998 8888887654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.77  E-value=0.003  Score=44.31  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .-.|++|.|+|.|.+|..+++.++.+|++ |+++++++.+.
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~-V~v~d~~~~~~  313 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGAT-VWVTEIDPICA  313 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSCHHHH
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCCE-EEEEeCChHhH
Confidence            35789999999999999999999999998 99999988764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.77  E-value=0.0021  Score=42.14  Aligned_cols=38  Identities=16%  Similarity=0.166  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .++++|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~   55 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRT-VRGFDLRPSG   55 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCC-EEEEESSCCS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCC
Confidence            45788999998 99999999999999998 9998887643

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.77  E-value=0.0029  Score=42.64  Aligned_cols=40  Identities=15%  Similarity=0.276  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .|++|.|+|.|.+|..+++.++.+|.++|++.++++++.+
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~  202 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD  202 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh
Confidence            5889999999999999999999999955888887765444

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.77  E-value=0.0035  Score=41.63  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=35.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..+|.|+|+|.+|.-.++.....|.+ |+..|.+++.++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~~~~l~~~   45 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIEPRQITGA   45 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECCHHHHHHH
Confidence            46899999999999999999999999 99999998876654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.76  E-value=0.0021  Score=40.21  Aligned_cols=35  Identities=9%  Similarity=-0.010  Sum_probs=30.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ++++|.|+ |.+|..++..+...|.+ |+++++++++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~-V~~~~r~~~~   37 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHT-VIGIDRGQAD   37 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCChhH
Confidence            47999998 99999999988888998 9998887654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.76  E-value=0.006  Score=38.31  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=41.2

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+....+.++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  139 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAER  139 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            44667889999999999986 888888998864 3349999999988877654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.75  E-value=0.0014  Score=42.07  Aligned_cols=38  Identities=37%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|++++|.|+ |++|..+++.+...|++ |++++++.++.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~   65 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGAR-VAVADRAVAGI   65 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECSSCCTTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHH
Confidence            5789999998 89999999999899998 99888876654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.75  E-value=0.0042  Score=40.12  Aligned_cols=40  Identities=8%  Similarity=0.020  Sum_probs=35.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|.|.+|....+.+...|.+ |++.++++++.+.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~~~   41 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCS-VTIWNRSPEKAEELA   41 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSGGGGHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHH
Confidence            5799999999999999998889987 999999999877654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.74  E-value=0.0023  Score=41.96  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++.
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~  158 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGMR-VIAYTRSSVDQ  158 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSCCCT
T ss_pred             ecchheeeccCchhHHHHHHHHhhCcE-EEEEecccccc
Confidence            478999999999999999999999998 99998876544

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.74  E-value=0.0033  Score=39.72  Aligned_cols=36  Identities=31%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~   42 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAK-VTGFDQAFT   42 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCchh
Confidence            4689999998 99999999999999998 888887754

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.73  E-value=0.0029  Score=42.38  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAK-AYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~~~~~~~~   95 (100)
                      .|+++.|+|.|.+|..+++.++ .+|.+ |++.++++++.+
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~~-V~~~d~~~~~~~  201 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGLGMK-LVYYDVAPADAE  201 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSCCCHH
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhcCCE-EEEECCCCcchh
Confidence            5789999999999999999999 99998 999988776544

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.73  E-value=0.0033  Score=40.68  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=33.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|...+..+...|.+ |+++++++++.+.++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~-V~~~~r~~~~~~~~~   43 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGND-VTLIDQWPAHIEAIR   43 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHH
Confidence            3799999999999988888888887 999999888776553

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.72  E-value=0.0051  Score=38.59  Aligned_cols=48  Identities=19%  Similarity=0.096  Sum_probs=39.7

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +....++++.+||-+|+|. |..+..+++..|.+ |+++|.+++..+.++
T Consensus        29 ~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvD~s~~~l~~a~   76 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLGSGS-GEMLCTWARDHGIT-GTGIDMSSLFTAQAK   76 (256)
T ss_dssp             HHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCCE-EEEEESCHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHH
Confidence            3566788999999999976 77788888888887 999999998777664

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.70  E-value=0.0033  Score=41.96  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~  200 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGMK-TIGYDPIISP  200 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSSCH
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCCE-EEEECCCcch
Confidence            578999999999999999999999998 9999887654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.70  E-value=0.0021  Score=45.22  Aligned_cols=41  Identities=24%  Similarity=0.341  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++++|+|+|++|.+++..+...|++ |+++.+++++.+.+
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~~-V~i~~R~~~~a~~l  403 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGAK-VVIANRTYERALEL  403 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            467899999999999999999999996 99998988776543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.0043  Score=39.80  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=29.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++++|.|+ |++|..+++.+...|++ |++++++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~   64 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVN   64 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5789999998 89999999999999999 7777544

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.69  E-value=0.0028  Score=42.21  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++..|.+ |++.++++++
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~d~~~~~  181 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVK-LYYWSRHRKV  181 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCCcch
Confidence            478999999999999999999999998 9999888765

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.68  E-value=0.0027  Score=41.69  Aligned_cols=34  Identities=41%  Similarity=0.425  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++++|.|+ |++|..+++.+...|++ |++++++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~-Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCc
Confidence            5789999998 89999999988889998 8888776

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.67  E-value=0.0021  Score=42.80  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++.+.
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~  181 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGAT-LQYHEAKALDT  181 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCE-EEEECSSCCCH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCCCCcH
Confidence            478999999999999999999999998 99998876433

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.67  E-value=0.0023  Score=42.54  Aligned_cols=37  Identities=24%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~  181 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVFEIK  181 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCccH
Confidence            368999999999999999999999998 9999877654

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.66  E-value=0.0033  Score=39.09  Aligned_cols=35  Identities=31%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++++|.|+ |++|..+++.+...|++ |++++++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEccCcc
Confidence            578999998 99999999888888998 888887654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.66  E-value=0.0026  Score=40.92  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchH
Confidence            4789999998 89999999999999998 8888877543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.66  E-value=0.0034  Score=39.51  Aligned_cols=39  Identities=23%  Similarity=0.128  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Chhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++ ++++.+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~   43 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYAGSKEKAE   43 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHH
Confidence            4688999998 89999999999999999 777665 444443

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.65  E-value=0.0033  Score=42.77  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +..+++|+|+|.++..++++++.+|++ |+++|.+++
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~-V~v~D~R~~  238 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYR-VTVCDARPV  238 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCE-EEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCchh
Confidence            667899999999999999999999999 999987655

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.65  E-value=0.003  Score=41.62  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+.+|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~   45 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPT   45 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCe-EEEEeCCCcc
Confidence            3578999998 99999999988888988 9998887654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.65  E-value=0.0035  Score=42.03  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~   91 (100)
                      .|++|+|+|+|+.|+.++..++..+.+ +|+++++++
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            489999999999999988777666532 388887664

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.64  E-value=0.0036  Score=41.04  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++++|.|+ |++|..+++.+...|++ |++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEecc
Confidence            5789999998 89999999999999999 8888765

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.64  E-value=0.0047  Score=40.90  Aligned_cols=39  Identities=18%  Similarity=0.046  Sum_probs=32.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAY-GARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~-g~~~v~~~~~~~~~~~~   96 (100)
                      +++|||.|+ |.+|..+++.+... |.+ |+++++++++.+.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~   64 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWE-VFGMDMQTDRLGD   64 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCE-EEEEESCCTTTGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCE-EEEEeCChhhhhh
Confidence            578999998 99999998888877 887 9999888766543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.64  E-value=0.0032  Score=42.32  Aligned_cols=39  Identities=18%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++.+.+
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr~~~~~~  201 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQMAPE  201 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECSSCCCHH
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCCCccCHH
Confidence            588999999999999999999999999 999988764433

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.64  E-value=0.0046  Score=40.09  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|+++||.|+ |++|..+++.+...|++ |++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5789999998 89999999999999999 8887765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.63  E-value=0.0043  Score=41.53  Aligned_cols=42  Identities=14%  Similarity=0.018  Sum_probs=36.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+|.|+|.|.+|..++..++..|.+ |++.++++++.+.+++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~-V~~~dr~~~~~~~a~~   49 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHS-VFGYNRSRSGAKSAVD   49 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH
Confidence            36799999999999999999999988 9999999988876643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.63  E-value=0.0083  Score=38.39  Aligned_cols=51  Identities=14%  Similarity=0.083  Sum_probs=41.2

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+....+.++++||-+|+|. |..++.+++..+ ..+|+++|.+++..+.+++
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            34667889999999999987 888888998864 3459999999988877653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.63  E-value=0.0046  Score=39.61  Aligned_cols=39  Identities=13%  Similarity=-0.041  Sum_probs=33.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|.+|...+..+...|.+ |+++++++++.+.++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~-V~~~~~~~~~~~~~~   40 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHY-LIGVSRQQSTCEKAV   40 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            689999999999999888888987 999999988876654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.62  E-value=0.0015  Score=40.86  Aligned_cols=38  Identities=21%  Similarity=0.162  Sum_probs=32.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEecChhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYG-ARVICVCKYVGIRIF   95 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~   95 (100)
                      .++|+|.|+ |.+|..+++.+...| .+ |+++++++++.+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~-V~~~~R~~~~~~   62 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIK-QTLFARQPAKIH   62 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEE-EEEEESSGGGSC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCce-EEEEEcChhhhc
Confidence            367999998 999999999999999 66 999988887654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.61  E-value=0.0045  Score=43.16  Aligned_cols=39  Identities=21%  Similarity=0.103  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++++++||.|+ |++|..+++.+...|.++|+.+++++.
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            567899999998 999999988888889977888888764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.61  E-value=0.0023  Score=41.86  Aligned_cols=36  Identities=19%  Similarity=0.101  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++|||.|+ |.+|..++..+...|.+ |++++++++
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~   40 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPT   40 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEECCcc
Confidence            4688999998 99999999888889998 888777765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.61  E-value=0.0043  Score=39.64  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +.+|||.|+|.+|..+++.+...|.+ |+++++++++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHE-VTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            46899999999999999999999998 9999887654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.61  E-value=0.0026  Score=42.11  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~~~~  174 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRSRKS  174 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESSCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCchh
Confidence            489999999999999999999999999 9999887654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.60  E-value=0.0045  Score=37.05  Aligned_cols=50  Identities=12%  Similarity=0.020  Sum_probs=38.2

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +.+....++++++||=+|+|. |..+..+++. +.+ |+++|.+++..+.+++
T Consensus        13 ~~~l~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~-v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           13 HDFLAEVLDDESIVVDATMGN-GNDTAFLAGL-SKK-VYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             HHHHHTTCCTTCEEEESCCTT-SHHHHHHHTT-SSE-EEEEESCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEEcCCC-CHHHHHHHHh-CCE-EEEEECCHHHHHHHHH
Confidence            334445678999999999875 6667777776 666 9999999998877654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.60  E-value=0.0026  Score=39.72  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=39.0

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++...++++++||-+|+|. |..+..+++..|..+|+++|.+++..+.++
T Consensus        67 l~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~  115 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELL  115 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHH
T ss_pred             ccccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHH
Confidence            3445678899999999987 888888888887556999999998776554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.60  E-value=0.0031  Score=42.02  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~  180 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPMK  180 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCcch
Confidence            478999999999999999999999999 9999877654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.60  E-value=0.0034  Score=41.78  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCCcchh
Confidence            478999999999999999999999998 99998877653

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.59  E-value=0.0043  Score=39.29  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ +++|..+++.+...|++ |++++++.++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~   45 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQ-VVVLDIRGED   45 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCchHH
Confidence            4688999998 89999999988889998 8888775543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.59  E-value=0.004  Score=41.09  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~  179 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMR-VVYHARTPKP  179 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCS
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCE-EEEECCCCcc
Confidence            578999999999999999999999998 9999887654

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.58  E-value=0.0043  Score=40.15  Aligned_cols=39  Identities=8%  Similarity=-0.071  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      -++..+|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~   48 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVE-VFGTSRNNEA   48 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCTTC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCE-EEEEecCCcc
Confidence            356789999998 99999999998888987 8888877654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.57  E-value=0.0037  Score=43.56  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +.++...|+|+|+|+.|+++...+...|.+ |+++++.+.
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~-v~vlE~~~~   45 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVE-VVVLERLVE   45 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESCCC
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            344556799999999999998888889999 999987654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.57  E-value=0.0036  Score=42.69  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++.+
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~-V~~~d~~~~~~~  228 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRLPES  228 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCCHH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCE-EEEEcCCccchh
Confidence            588999999999999999999999998 999988764433

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.57  E-value=0.0088  Score=37.60  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=41.2

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+...+++++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            34667889999999999987 888888888853 3459999999988877654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.57  E-value=0.0028  Score=40.81  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +++|+|.|+ |.+|..+++.+...|.+ |+++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNP-TYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCC-EEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCc-EEEEECCC
Confidence            467999998 99999999888888988 88888876

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.56  E-value=0.0053  Score=36.59  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +++|+|+|+.|+.++..+...|.+ |+++++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~-v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLK-VLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            689999999999999999999998 88888765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.56  E-value=0.0044  Score=41.61  Aligned_cols=35  Identities=29%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .-.|+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGID-CDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCCC
Confidence            45799999999999999988889998 999987654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.55  E-value=0.0054  Score=39.21  Aligned_cols=36  Identities=14%  Similarity=0.053  Sum_probs=30.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEecChhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAY-GARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~-g~~~v~~~~~~~~~~~   95 (100)
                      +|||.|+ |.+|..+++.+... |.+ |+++++++++.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~-V~~~~R~~~~~~   39 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDH-FHIGVRNVEKVP   39 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTT-EEEEESSGGGSC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCc-EEEEECCHHHHH
Confidence            5899998 99999999888877 888 999989887654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.54  E-value=0.0047  Score=41.40  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ...|+|+|+|+.|+.++..++..|.+ |.++++.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVD-VDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence            45799999999999999999989998 999987654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.54  E-value=0.0051  Score=40.13  Aligned_cols=36  Identities=8%  Similarity=-0.022  Sum_probs=30.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +++|||.|+ |.+|..+++.+...|.+ |+++.+++++
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~-V~~~~r~~~~   45 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYA-VNTTVRDPDN   45 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCE-EEEEESCTTC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCcch
Confidence            689999998 99999999988889998 8877776553

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.54  E-value=0.0041  Score=43.34  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +....|+|+|+|+.|+++...+...|.+ |+++++.+.
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~-v~vlE~~~~   46 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVD-VMVLEQLPQ   46 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCC-EEEEESCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence            3456799999999999998888889999 999987644

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.54  E-value=0.0054  Score=38.53  Aligned_cols=48  Identities=15%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..+++++.+||-+|+| .|..+..+++..+.+ |+++|.+++..+.+++
T Consensus        49 ~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~-v~~vD~s~~~~~~a~~   96 (266)
T 3ujc_A           49 SDIELNENSKVLDIGSG-LGGGCMYINEKYGAH-THGIDICSNIVNMANE   96 (266)
T ss_dssp             TTCCCCTTCEEEEETCT-TSHHHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCC-CCHHHHHHHHHcCCE-EEEEeCCHHHHHHHHH
Confidence            55678899999999997 577778888877777 9999999988877654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.54  E-value=0.0056  Score=37.60  Aligned_cols=38  Identities=21%  Similarity=0.172  Sum_probs=31.9

Q ss_pred             EEEEEc-CCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLS-AGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G-~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++|+| +|.+|...+..+...|.+ |+++++++++.+.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~-V~~~~r~~~~~~~~   40 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            689999 699999988888888887 99999988876543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.53  E-value=0.0056  Score=39.17  Aligned_cols=40  Identities=13%  Similarity=0.022  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~   95 (100)
                      ..+++++|.|+ |++|..+++.+...|++ |+++ .+++++.+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~   66 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGKAAAAE   66 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSCSHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence            35789999998 89999999888888999 6665 44444433

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0047  Score=39.09  Aligned_cols=40  Identities=13%  Similarity=0.058  Sum_probs=31.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC--CcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYG--ARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g--~~~v~~~~~~~~~~~~~   97 (100)
                      |++++|.|+ +++|..+++.+...|  .. |+.+++++++.+.+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~-v~~~~r~~~~~~~~   44 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTV-VYGVARSEAPLKKL   44 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCE-EEEEESCHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeE-EEEecCCHHHHHHH
Confidence            578999998 899999887766665  55 88888888776544

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.52  E-value=0.0024  Score=40.29  Aligned_cols=39  Identities=21%  Similarity=0.072  Sum_probs=29.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIR   93 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~   93 (100)
                      ..+++++||.|+ |++|..++..+...|++ |++++ ++.++
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~~~~~~~   50 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGCGPNSPR   50 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEECTTCSS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHH
Confidence            456889999998 89999999998899998 77766 44443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.51  E-value=0.0043  Score=39.29  Aligned_cols=42  Identities=17%  Similarity=-0.016  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         54 VGLGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      ..++++++|.|+   |++|..+++.+...|++ |++++++++..+.
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~   55 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAE-LAFTYVGDRFKDR   55 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCC-EEEEecchhhHHH
Confidence            456899999984   68999999998899998 8888877554443

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.50  E-value=0.0038  Score=41.91  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ...|+|+|+|+.|++++..++..|.+ |+++++.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGID-VSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCE-EEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            45899999999999999998889998 99998765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.50  E-value=0.0061  Score=39.70  Aligned_cols=41  Identities=10%  Similarity=-0.003  Sum_probs=35.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ..+|.|+|.|.+|......+...|.+ |++.++++++.+.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~~~   47 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLS-TWGADLNPQACANLL   47 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHH
Confidence            35799999999999999888889988 999999999887654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.0057  Score=40.11  Aligned_cols=41  Identities=15%  Similarity=0.122  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -.++|.|+|+|.+|...++.+. .|.+ |++.++++++.+.++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~-V~v~d~~~~~~~~~~   51 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHE-VVLQDVSEKALEAAR   51 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSE-EEEECSCHHHHHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCE-EEEEECCHHHHHHHH
Confidence            3588999999999998888888 8998 999999999887654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.50  E-value=0.0075  Score=39.47  Aligned_cols=41  Identities=15%  Similarity=0.036  Sum_probs=36.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -.+|.|+|.|.+|....+.+...|.+ |++.++++++.+.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~   61 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFK-VTVWNRTLSKCDELV   61 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSGGGGHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHH
Confidence            36899999999999999998889987 999999999877654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.50  E-value=0.0067  Score=42.57  Aligned_cols=39  Identities=23%  Similarity=0.201  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++++++||.|+ |++|..++..+...|+++|+.+.+++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            467899999998 999999998888899976888887763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.49  E-value=0.006  Score=42.48  Aligned_cols=37  Identities=30%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ......|+|+|+|+.|+.++..+...|.+ |++++..+
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~-V~liEk~~  125 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALLGAR-VVLVEKRI  125 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCS
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHCCCe-EEEEEecc
Confidence            34567899999999999998888888998 88888654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.49  E-value=0.0056  Score=40.28  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=36.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ..+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~l~   71 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYA-LQVWNRTPARAASLA   71 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCe-EEEEcCCHHHHHHHH
Confidence            46899999999999999988889998 999999999877654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.49  E-value=0.0044  Score=39.53  Aligned_cols=38  Identities=13%  Similarity=0.100  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIR   93 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~   93 (100)
                      ..+++++|.|+ |++|..+++.+...|++ |++++ +++++
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~   62 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSHSERNDH   62 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEECSCHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCchHH
Confidence            45788999998 89999999999899998 87776 44443

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.49  E-value=0.0052  Score=39.72  Aligned_cols=34  Identities=18%  Similarity=0.045  Sum_probs=28.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec-Ch
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY-VG   91 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~-~~   91 (100)
                      |++|||.|+ |.+|..+++.+...|.+ |+++++ ++
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~   36 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYS-VNTTIRADP   36 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEECCCC-
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCE-EEEEEeCCc
Confidence            578999998 99999999988889998 887766 44

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.49  E-value=0.0061  Score=38.99  Aligned_cols=48  Identities=15%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..+++++.+||-+|+|. |..+..+++..|.+ |++++.+++..+.+++
T Consensus        58 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGCGW-GATMMRAVEKYDVN-VVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             TTTTCCTTCEEEEETCTT-SHHHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCcc-cHHHHHHHHHcCCE-EEEEECCHHHHHHHHH
Confidence            556788999999999976 67778888777886 9999999988776653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.48  E-value=0.0069  Score=39.49  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+|||.|+ |.+|..+++.+...|.+ |+++++++++.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~   51 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHD-LVLIHRPSSQIQ   51 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECTTSCGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecChHhhh
Confidence            47999998 99999999998889987 999988776543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.48  E-value=0.0046  Score=40.94  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec-Chhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY-VGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~-~~~~   93 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++ ++++
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~  182 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRASS  182 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCCCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCcCh
Confidence            578999999999999999999999998 999988 6654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.48  E-value=0.0042  Score=40.16  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=27.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++|||.|+ |.+|..+++.+...|.+ |++++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWH-AVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCe-EEEEccCCC
Confidence            578999998 99999999988888987 888876543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.47  E-value=0.0047  Score=39.03  Aligned_cols=35  Identities=34%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|++|||+|+|.+|...++.+...|++ |++++++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~-VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAA-ITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCC-EEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCC
Confidence            589999999999999999999999999 88886643

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.47  E-value=0.0053  Score=38.97  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+   |++|..+++.+...|++ |++++++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~   45 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAER   45 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEESCGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHH
Confidence            4688999996   59999999888888998 888888764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.46  E-value=0.0051  Score=38.64  Aligned_cols=40  Identities=20%  Similarity=0.043  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-ecChhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC-KYVGIRIF   95 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~-~~~~~~~~   95 (100)
                      -.+++++|.|+ +++|..+++.+...|++ |+++ .+++++.+
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~   46 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAE   46 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCSHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchHHHH
Confidence            35789999998 89999999999999998 6664 45554443

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.46  E-value=0.0055  Score=39.01  Aligned_cols=39  Identities=28%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EecChhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICV-CKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~~   95 (100)
                      .+++++|.|+ |++|..+++.+...|++ |++ ..+++++.+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i~~~r~~~~~~   65 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFN-IGVHYHRDAAGAQ   65 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCchHHHH
Confidence            4688999998 89999999999999999 655 445555443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.46  E-value=0.0061  Score=40.23  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=33.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|......+...|.+ |+++++++++.+.++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~-V~~~~r~~~~~~~~~   44 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQS-VLAWDIDAQRIKEIQ   44 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHH
Confidence            4799999999999988888888987 999999888776543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.45  E-value=0.006  Score=41.01  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~  194 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMN-VLVWGRENS  194 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSHHH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCE-EEEECCCCC
Confidence            478999999999999999999999998 999987753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.45  E-value=0.0044  Score=40.51  Aligned_cols=36  Identities=19%  Similarity=0.152  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.+|||.|+ |.+|..+++.+...|.+ |++++++++
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~-V~~~~r~~~   55 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHE-ILVIDNFAT   55 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCE-EEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCc
Confidence            4789999998 99999999988888988 888887544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.45  E-value=0.0068  Score=37.46  Aligned_cols=46  Identities=13%  Similarity=0.074  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYG-----ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g-----~~~v~~~~~~~~~~~~~~~   99 (100)
                      .++++++||-+|+|. |..+..+++..+     ..+|+.++.+++..+.+++
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            678999999999987 888888888876     1249999999988877653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.44  E-value=0.0058  Score=40.97  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++.+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~  208 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGLA-IHYHNRTRLS  208 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTCE-EEEECSSCCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCCE-EEEECCCCcc
Confidence            378999999999999999999999998 9999887543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.44  E-value=0.0059  Score=39.98  Aligned_cols=39  Identities=10%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|+|+|+|.+|.+....+. .|.+ |..+++++++.+.++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~-V~~~~r~~~~~~~l~   41 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHD-VTVVTRRQEQAAAIQ   41 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSE-EEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCc-eEEEECCHHHHHHHH
Confidence            47999999999998877777 7877 999999887766543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.44  E-value=0.011  Score=37.67  Aligned_cols=51  Identities=20%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+....+.++++||-+|+| .|..+..+++..+ ..+|+.+|.+++..+.+++
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            3466778999999999998 6888888888764 3359999999988877653

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.44  E-value=0.0052  Score=37.29  Aligned_cols=31  Identities=16%  Similarity=0.225  Sum_probs=27.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +++|.|+ |.+|..+++.+. .|.+ |+++++++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~-V~~~~r~~   36 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAE-VITAGRHS   36 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSE-EEEEESSS
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCe-EEEEecCc
Confidence            7999998 999999988888 8988 88887764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.44  E-value=0.0058  Score=40.08  Aligned_cols=36  Identities=11%  Similarity=-0.000  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++|||.|+ |.+|..+++.+...|.+ |+++++++.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQV-VIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCC
Confidence            3689999998 99999999999999988 888887543

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.43  E-value=0.0053  Score=40.38  Aligned_cols=34  Identities=24%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+|+|.|+ |.+|..+++.+...|.+ |+++++++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRP-TYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCC-EEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCC-EEEEECCC
Confidence            368999999 99999999999888987 88888876

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.42  E-value=0.0048  Score=41.06  Aligned_cols=37  Identities=24%  Similarity=0.432  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~  175 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGMK-VLGVSRSGRE  175 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCCE-EEEEcCChHH
Confidence            488999999999999999999999998 9999877643

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.42  E-value=0.011  Score=38.90  Aligned_cols=51  Identities=20%  Similarity=0.167  Sum_probs=40.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      .+....+.++++||-+|+|. |..++.+++..|. .+|+++|.+++..+.+++
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            34556789999999999987 7778888888764 459999999988877654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.41  E-value=0.005  Score=39.76  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|.|.+|....+.+...|.+ |++.++++++.+.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~~~   41 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFD-VTVWNRNPAKCAPLV   41 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCC-EEEECSSGGGGHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHH
Confidence            3689999999999988888888988 999999999877654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.40  E-value=0.0054  Score=39.23  Aligned_cols=36  Identities=14%  Similarity=0.089  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+   |++|..+++.+...|++ |++++++++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~-V~~~~r~~~   43 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNES   43 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence            4789999986   69999999998889998 888888765

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.40  E-value=0.0028  Score=42.86  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+..+++|+|+|.++..++++++.+|++ |+++|..++.
T Consensus       197 ~p~~~L~I~GaGhva~aLa~la~~lgf~-V~v~D~R~~~  234 (362)
T 3on5_A          197 SPKERLIIFGAGPDVPPLVTFASNVGFY-TVVTDWRPNQ  234 (362)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHHTEE-EEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEECCCccc
Confidence            4567899999999999999999999999 9999887663

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.40  E-value=0.0052  Score=40.93  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ...|+|+|+|+.|+.++..+...|.+ |.++++++.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~-v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWD-VRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC-EEEEecCCC
Confidence            45799999999999999988889998 999987543

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.40  E-value=0.0069  Score=39.02  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +++|||.|+ |.+|..+++.+...|.+ |+++++++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEE-VTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCC-EEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCE-EEEEecCCc
Confidence            678999999 99999999999989998 999887665

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.40  E-value=0.0042  Score=42.32  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+|+|+|+|+.|+.+...+...|.+ |++++..+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~-V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVD-VTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCE-EEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCe-EEEEcCCC
Confidence            36799999999999998888889998 88888654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.39  E-value=0.0048  Score=41.18  Aligned_cols=33  Identities=30%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc--CCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAY--GARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~--g~~~v~~~~~~~~   92 (100)
                      .|+|+|+|+.|++++..++..  |.+ |+++++++.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~-V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWA-IDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSE-EEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCC-EEEEECCCC
Confidence            689999999999988887777  988 999987654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.39  E-value=0.0068  Score=39.19  Aligned_cols=37  Identities=14%  Similarity=0.046  Sum_probs=30.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +++|||.|+ |.+|..+++.+...|.+ |+++++++.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~   39 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNT-PIILTRSIGNK   39 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCCCCcc
Confidence            368999998 99999999999999988 99998875443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.38  E-value=0.0058  Score=40.88  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|+.++..+...|.+ |+++++.+.
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~-V~viE~~~~   40 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHR-VVVVEQARR   40 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence            4699999999999999888889999 999987643

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.38  E-value=0.0044  Score=37.76  Aligned_cols=37  Identities=14%  Similarity=0.049  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--cEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGA--RVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~--~~v~~~~~~~~~   93 (100)
                      .+++++|.|+ |.+|..+++.+...|.  + |+++++++++
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~-V~~~~r~~~~   43 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAK-VIAPARKALA   43 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCE-EECCBSSCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCe-EEEEeCCCcc
Confidence            3578999998 9999999999999997  5 9888887654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.38  E-value=0.012  Score=37.28  Aligned_cols=47  Identities=19%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +..+++++.+||-+|+|. |..+..+++..+.+ |++++.+++..+.++
T Consensus        55 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~  101 (273)
T 3bus_A           55 ALLDVRSGDRVLDVGCGI-GKPAVRLATARDVR-VTGISISRPQVNQAN  101 (273)
T ss_dssp             HHSCCCTTCEEEEESCTT-SHHHHHHHHHSCCE-EEEEESCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCE-EEEEeCCHHHHHHHH
Confidence            667788999999999875 66777888877877 999999988777664

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.38  E-value=0.0055  Score=41.05  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~  183 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGAK-VIAYDVAYNP  183 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCG
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCCE-EEEECCChhh
Confidence            378999999999999999999999998 9999887654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.37  E-value=0.0059  Score=39.12  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+.++|.|+ +++|..+++.....|++ |++++++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~r~~~   44 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAE-VVCAARRAP   44 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCE-EEEEeCCcH
Confidence            5899999998 89999999999999999 888887653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.37  E-value=0.034  Score=35.30  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++++++||-+|+|. |..++.+++ .|. +|+++|.++...+.+++
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHH
Confidence            67899999999976 767777666 577 49999999988877654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.37  E-value=0.0063  Score=39.15  Aligned_cols=34  Identities=24%  Similarity=0.149  Sum_probs=30.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|||.|+ |-+|..+++.+...|.+ |+++.+++++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~-V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHE-VTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCc
Confidence            6999998 99999999999999998 8888887654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.37  E-value=0.007  Score=38.65  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .|++++|.|+ +++|..+++.+...|++ |++++++
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~~   51 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYAN   51 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence            5789999998 89999999999999998 7776553

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.37  E-value=0.0055  Score=43.10  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=29.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~-V~vlEr~~~   60 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVG-HLVVEQTDG   60 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            3699999999999998888889999 999987653

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.35  E-value=0.006  Score=39.21  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|.|+   |++|..+++.+...|++ |++++++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQ-LAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCCHH
Confidence            5789999996   59999999988889998 888888764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.33  E-value=0.0089  Score=41.64  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+|.|+|+|.+|+.....+...|.+ |+++++++++.+.+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~-V~~~d~~~~~v~~l~~   49 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHD-VFCLDVDQAKIDILNN   49 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHT
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHC
Confidence            46899999999999988888888988 9999999998887653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.33  E-value=0.0085  Score=38.46  Aligned_cols=36  Identities=17%  Similarity=0.098  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSA-GP--IGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~-G~--~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -.+++++|.|+ |.  +|..+++.+...|++ |+++++++
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~   62 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAE-LAFTYVGQ   62 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCE-EEEEECTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCE-EEEeeCch
Confidence            35789999996 55  999999988899998 88888876

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.33  E-value=0.0074  Score=39.48  Aligned_cols=36  Identities=14%  Similarity=0.102  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.+|||.|+ |.+|..+++.+...|.+ |+++++++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~   56 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDK-VVGIDNFAT   56 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCCc
Confidence            4678999998 99999999988888987 888887643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.32  E-value=0.0052  Score=40.97  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+|+|+|+.|++++..+...|.+ |+++++.+.
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   36 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGID-NVILERQTP   36 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEECSSCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            599999999999998888888999 999987654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.32  E-value=0.0064  Score=42.03  Aligned_cols=40  Identities=20%  Similarity=0.110  Sum_probs=33.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +++|+|+|+|.+|..+++.+...|.+ |++.++++++.+.+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~-V~v~~R~~~~a~~l   42 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIK-VTVACRTLESAKKL   42 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCE-EEEEESSHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCE-EEEEECCHHHHHHH
Confidence            57899999999999998888888987 99999988776543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.32  E-value=0.014  Score=35.99  Aligned_cols=46  Identities=15%  Similarity=0.149  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      .++++++||-+|+|+ |..+..+++..|. .+|+++|.+++..+.+++
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            378899999999986 7777888888764 259999999988877653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.32  E-value=0.013  Score=38.40  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      .++...++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            34667889999999999987 7778888887652 459999999988877654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.32  E-value=0.013  Score=37.04  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+.+|.|+|+|.+|..+++.+...|.+ |++.++++++
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~-V~~~~r~~~~   54 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHE-VTIGTRDPKA   54 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCE-EEEEeCChhh
Confidence            468899999999999999999889987 9999999887

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.31  E-value=0.0072  Score=39.86  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=29.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +++++|.|+ |++|..+++.+...|++ |+++.++
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~   38 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGHR-VYASMRD   38 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCc
Confidence            678999998 99999999999999998 8877664

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.31  E-value=0.0059  Score=39.35  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+|+|.|+ |.+|..+++.+...|.+ |++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~   37 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRP   37 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCc-EEEEECC
Confidence            467999998 99999999998888988 8888887

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.30  E-value=0.009  Score=38.39  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=31.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEecChhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYG-ARVICVCKYVGIRI   94 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~   94 (100)
                      .++|+|.|+ |.+|..+++.+...| .+ |+++++++++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~-V~~~~R~~~~~   43 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFK-VRVVTRNPRKK   43 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSE-EEEEESCTTSH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCce-EEEEEcCCCCH
Confidence            578999998 999999998888778 77 99988887653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.30  E-value=0.0074  Score=41.85  Aligned_cols=39  Identities=18%  Similarity=0.148  Sum_probs=34.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+|.|+|+|.+|..+++.+...|.+ |++.++++++.+.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~-V~l~D~~~~~~~~~   76 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQLDAA   76 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHH
Confidence            5799999999999999888888998 99999998877654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.30  E-value=0.0079  Score=41.59  Aligned_cols=40  Identities=18%  Similarity=0.066  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc---CCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAY---GARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~---g~~~v~~~~~~~~~~   94 (100)
                      ...+++|+|.|+ |.+|..+++.+...   |.+ |+++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~-V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGR-LICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCE-EEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCE-EEEEECCCCcH
Confidence            346889999998 99999988777766   777 99998876543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.30  E-value=0.01  Score=38.77  Aligned_cols=40  Identities=13%  Similarity=0.099  Sum_probs=34.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~   70 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHT-VTVWNRTAEKCDLFI   70 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC-EEEECSSGGGGHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHH
Confidence            6799999999999998888888988 999999988876543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.0051  Score=38.35  Aligned_cols=39  Identities=15%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEE-EecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICV-CKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~-~~~~~~~~~~~   97 (100)
                      .+|.|+|+|.+|...+..+...|.+ |++ .++++++.+.+
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~r~~~~~~~l   63 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIP-AIIANSRGPASLSSV   63 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCC-EEEECTTCGGGGHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCCHHHHHHH
Confidence            5799999999999998888888988 777 88888887654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.29  E-value=0.0096  Score=39.91  Aligned_cols=36  Identities=33%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+.+|+|+|+|++|..++..+...|..++.++|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            478999999999999999999999999898887643

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.29  E-value=0.011  Score=38.73  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ...+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~~~   49 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKR-VAIWNRSPGKAAALV   49 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHH
Confidence            346799999999999999988889998 999999998877653

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.28  E-value=0.0082  Score=39.67  Aligned_cols=36  Identities=14%  Similarity=0.159  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH--cCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKA--YGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~--~g~~~v~~~~~~~~   92 (100)
                      .+++|||.|+ |.+|..+++.+..  .|.+ |+++++++.
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~-V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAK-VVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSE-EEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCe-EEEEECCCc
Confidence            4689999998 9999999888888  8998 888887554

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.28  E-value=0.0085  Score=37.98  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=32.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|.+|...+..+...| .+ |++.++++++.+.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~-v~~~~r~~~~~~~~~   41 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYR-IYIANRGAEKRERLE   41 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCE-EEEECSSHHHHHHHH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCe-EEEECCCHHHHHHHH
Confidence            6889999999999888877778 66 999999988876553

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.28  E-value=0.0087  Score=40.27  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|++++..+...|.++|+++++.+.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            57999999999999998888889875788876543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.27  E-value=0.0016  Score=41.47  Aligned_cols=37  Identities=16%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +++|+|.|+ |.+|..+++.+...|.+ |+++++++++.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~-V~~~~r~~~~~   40 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEI-LRLADLSPLDP   40 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEE-EEEEESSCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCE-EEEEecCCccc
Confidence            468999998 99999999888888987 88888877543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.26  E-value=0.0096  Score=37.61  Aligned_cols=40  Identities=10%  Similarity=0.103  Sum_probs=34.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC----cEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA----RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~----~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|...+..+...|.    + |++.++++++.+.+.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~-V~~~~r~~~~~~~~~   46 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQ-IICSDLNTANLKNAS   46 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGG-EEEECSCHHHHHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCe-EEEEeCCHHHHHHHH
Confidence            468999999999999888888887    6 999999998877653

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.26  E-value=0.012  Score=38.31  Aligned_cols=36  Identities=19%  Similarity=-0.001  Sum_probs=30.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEecChhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAY-GARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~-g~~~v~~~~~~~~~~~   95 (100)
                      +|||.|+ |.+|..+++.+... |.+ |+++++++++.+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~   39 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYE-VYGLDIGSDAIS   39 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCE-EEEEESCCGGGG
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCE-EEEEeCCcchHH
Confidence            6999998 99999999888887 787 999888776543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.26  E-value=0.011  Score=38.34  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC---cEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA---RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~---~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|...++.+...|.   + |++.++++++.+.++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~-V~v~dr~~~~~~~l~   46 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNR-ICVTNRSLDKLDFFK   46 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGG-EEEECSSSHHHHHHH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCe-EEEEeCCHHHHHHHH
Confidence            579999999999999998888886   5 999999998887654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.25  E-value=0.0066  Score=38.59  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+   |++|..+++.+...|++ |+++++++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCcH
Confidence            4688999986   58999999998889998 88888876

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.25  E-value=0.0086  Score=38.16  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA---GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~---G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+++++|.|+   |++|..+++.+...|++ |+++++++++
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~-V~~~~r~~~~   45 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLR   45 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEECSCHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecChHH
Confidence            4788999994   79999999999899998 8888887755

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.25  E-value=0.0081  Score=38.70  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=30.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .+|||.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~   36 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYE-VVVVDNLSSG   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCC
Confidence            37999998 99999999999999998 8888876654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.24  E-value=0.0067  Score=40.72  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=28.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..|+|+|+|+.|++++..+...|.+ |+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~-V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFK-VKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC-EEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            4699999999999998888888998 99998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.23  E-value=0.0071  Score=39.05  Aligned_cols=40  Identities=15%  Similarity=-0.006  Sum_probs=34.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|...+..+...|.+ |++.++++++.+.++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~-V~~~~~~~~~~~~~~   45 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVI   45 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHH
Confidence            3799999999999988888888987 999999988876654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.23  E-value=0.0085  Score=38.66  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+|+|+|+|+.|+.++..++..|.+ |++++.++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~   40 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQAS-VKIIESLP   40 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCC-EEEEEcCC
Confidence            4699999999999998888888998 99998764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.22  E-value=0.034  Score=36.50  Aligned_cols=43  Identities=7%  Similarity=0.031  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..+.++.|+|+|.+|...++.+.. .|.++|.+.++++++.+.+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l  176 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKF  176 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Confidence            457789999999999988776655 4886699999998887654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.22  E-value=0.007  Score=38.92  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++|+|.|+ |.+|..+++.+...|.+ |+++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCC-EEEEECCc
Confidence            467999998 99999999998889988 88888763

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.21  E-value=0.0075  Score=40.19  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++.|+|.|.+|..+++.++..|.+ |++.++++++
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~dr~~~~  199 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSRSKKP  199 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCchh
Confidence            478899999999999999999999998 9999887654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.21  E-value=0.012  Score=34.90  Aligned_cols=47  Identities=15%  Similarity=0.017  Sum_probs=37.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +...+.++++||-+|+|. |..+..+++.. . +++++|.+++..+.+++
T Consensus        27 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHH
Confidence            556788999999999977 77777777766 4 49999999988777653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.20  E-value=0.0039  Score=39.03  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ....++++|+|+|.+|..+++.++..|.  |+++++++++.+.+
T Consensus         6 ~~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~   47 (234)
T 2aef_A            6 VAKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVL   47 (234)
T ss_dssp             ----CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHH
Confidence            3456789999999999998888887776  78888888876543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.20  E-value=0.0077  Score=41.60  Aligned_cols=35  Identities=37%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+.+|+|+|+|+.|+.++..++..|.+ |++++..+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~-V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYE-VHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCC-EEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            467899999999999998888888998 88887654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.19  E-value=0.0094  Score=39.78  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=28.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..|+|+|+|.+|++++..+...|.+ |++++..+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~-V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHR-VLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCC
Confidence            3699999999999988888888998 99998654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.19  E-value=0.0098  Score=41.13  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+|.|+|+|.+|..++..+...|.+ |+++++++++.+.++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~-V~~~D~~~~~v~~l~   42 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGAN-VRCIDTDRNKIEQLN   42 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCE-EEEEECCHHHHHHHH
Confidence            4799999999999988888888988 999999999877654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=96.19  E-value=0.007  Score=42.24  Aligned_cols=34  Identities=32%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|+++...+...|.+ |+++++++.
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~-v~viEr~~~   39 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVR-VLVVERRPG   39 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            4699999999999998888888999 999987653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.18  E-value=0.012  Score=39.18  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=32.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh-hhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR-IFPY   97 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~-~~~~   97 (100)
                      +.+|.|+|.|.+|...++.++..|.+ |++.++++++ .+.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~-V~~~~~~~~~~~~~a   56 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVD-VTVGLRSGSATVAKA   56 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCC-EEEECCTTCHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCE-EEEEECChHHHHHHH
Confidence            46799999999999999999999987 8888887665 4443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.18  E-value=0.0076  Score=41.35  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=33.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|.+|......+...|.+ |+++++++++.+.++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~-V~~~d~~~~~~~~l~   40 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLIN   40 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHh
Confidence            688999999999988888888988 999999999887654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.17  E-value=0.013  Score=36.64  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..|+|+|+|+.|+.++..+...|.+ |++++++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~-v~lie~~~   36 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVR-VGLLTQSL   36 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEEESCG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            3599999999999999999999998 88888763

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.17  E-value=0.0037  Score=38.75  Aligned_cols=35  Identities=17%  Similarity=0.040  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~   40 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTI-VHVASRQT   40 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEE-EEEESGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEecCCc
Confidence            4678999998 89999999988888998 88887654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.17  E-value=0.044  Score=36.23  Aligned_cols=43  Identities=5%  Similarity=0.008  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~   97 (100)
                      +...+++|+|+|.+|...++.+.. .+.++|.+.++++++.+.+
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~l  166 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKF  166 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence            567899999999999887776655 5777799999998887654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.17  E-value=0.0067  Score=38.89  Aligned_cols=38  Identities=11%  Similarity=-0.004  Sum_probs=31.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|+|.+|...+..+.. |.+ |++.++++++.+.+.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~-V~~~~~~~~~~~~~~   40 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFP-TLVWNRTFEKALRHQ   40 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSC-EEEECSSTHHHHHHH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCe-EEEEeCCHHHHHHHH
Confidence            68999999999988877777 988 999999888876543

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.16  E-value=0.0092  Score=39.38  Aligned_cols=36  Identities=14%  Similarity=-0.003  Sum_probs=28.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +++|+|.|+ |.+|..+++.+...|.+ |+++++++++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~   37 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRASS   37 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC----
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCCcc
Confidence            368999998 99999999988888987 8888876543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.16  E-value=0.0087  Score=40.11  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.+++++
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~-V~~~d~~~~  202 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYLS  202 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCE-EEEECCCcc
Confidence            578999999999999999999999998 998887654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.16  E-value=0.0092  Score=35.88  Aligned_cols=41  Identities=22%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC---------cEEEEEecChhh
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGA---------RVICVCKYVGIR   93 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~~g~---------~~v~~~~~~~~~   93 (100)
                      ..++++++||-+|+|+ |..+..+++..|.         .+|+++|.++..
T Consensus        18 ~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~   67 (196)
T 2nyu_A           18 QILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF   67 (196)
T ss_dssp             CCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC
T ss_pred             CCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc
Confidence            3468899999999998 8899999999874         459999988743

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.16  E-value=0.0052  Score=38.13  Aligned_cols=46  Identities=17%  Similarity=0.104  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC------cEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGA------RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~------~~v~~~~~~~~~~~~~~~   99 (100)
                      .++++++||-+|+|. |..+..+++..+.      .+|+.+|.+++..+.+++
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence            578899999999986 8888888887763      249999999988877653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.15  E-value=0.006  Score=41.96  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++|+|+|+|..|+.++..+...|.+ |.+.+.++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~-V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIP-VLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCC-EEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCc-EEEEccCC
Confidence            4699999999999999888889999 99887654

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.15  E-value=0.014  Score=40.97  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +++||.|+ |++|..+++.+...|+++|+.+.+++
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            89999998 99999999888889997688887753

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.15  E-value=0.0089  Score=40.00  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |++.++++++
T Consensus       170 ~gktiGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~  206 (340)
T 4dgs_A          170 KGKRIGVLGLGQIGRALASRAEAFGMS-VRYWNRSTLS  206 (340)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCCT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCccc
Confidence            478999999999999999999999998 9999887654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.14  E-value=0.012  Score=38.86  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ..+|.|+|+|.+|......+...|.+ |.++++++++.+.++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~-V~~~~r~~~~~~~l~   54 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEE-VILWARRKEIVDLIN   54 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHH
Confidence            46799999999999988888788887 999999888776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	6e-12
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-11
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	9e-11
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-10
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-09
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	9e-08
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	3e-07
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	5e-07
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	1e-06
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	5e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	9e-06
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	1e-05
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-05
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	3e-05
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	3e-05
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	9e-05
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	1e-04
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	8e-04
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	0.001
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	0.002
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	0.002
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.004

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 6e-12
 Identities = 36/57 (63%), Positives = 43/57 (75%)

Query: 32 TLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK 88
          T EEGAL+EPL+VG+HAC+R GV LG  VLV  AGPIG+VT+L AKA GA  + V  
Sbjct: 2  TFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD 58

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 56.1 bits (134), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 19  HAADFCYKLPDHLT-LEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAK 77
           +A     KLPD    +E+  + E + V V +   +  G G       AG      I   K
Sbjct: 142 YADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAPRGYG----EFDAGVPKKFVIDPHK 197

Query: 78  AYGA 81
            + A
Sbjct: 198 TFSA 201

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 53.1 bits (126), Expect = 9e-11
 Identities = 42/58 (72%), Positives = 52/58 (89%)

Query: 32 TLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89
          +LEEGALLEPL+VGVHAC+R+GV LGT+VLV+ AGPIGLV++LAAKAYGA V+C  + 
Sbjct: 2  SLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-10
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
           + FCATPP  GNL +FYKH A FCYKLPD++         PL   + A +    GLG  +
Sbjct: 116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLV-THRFPLEKALEAFETFKKGLGLKI 174

Query: 61  LVLSAGPIG 69
           ++    P  
Sbjct: 175 ML-KCDPSD 182

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (117), Expect = 3e-09
 Identities = 6/63 (9%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEP-LAVGVHACKRSGVGLGTS 59
             +       G  + + +    F   +P+++ +E   + E  +       ++  V    +
Sbjct: 123 QPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVRYRFT 182

Query: 60  VLV 62
           ++ 
Sbjct: 183 LVG 185

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 45.6 bits (107), Expect = 9e-08
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 33 LEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG 91
          + +   L + L  G H    +GVG G++V V  AGP+GL    +A+  GA V+ V     
Sbjct: 1  IRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 60

Query: 92 IRIFPYKK 99
           R+   K 
Sbjct: 61 ARLAHAKA 68

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.7 bits (102), Expect = 3e-07
 Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 6/57 (10%)

Query: 7   PPHHGNLSQFYK-HAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLV 62
           P   G  S            K+ + +T        PL     A +         V++
Sbjct: 130 PHLRGCYSSHIVLDPETDVLKVSEKITHRL-----PLKEANKALELMESREALKVIL 181

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.4 bits (101), Expect = 5e-07
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
               A     G  +++ + AAD+  K+PD+  +E    LE +        + G   G  V
Sbjct: 108 HQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEV-QPLEKINEVFDRMLK-GQINGRVV 165

Query: 61  LVL 63
           L L
Sbjct: 166 LTL 168

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 42.6 bits (99), Expect = 1e-06
 Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 12/82 (14%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGV------------HA 48
               A      +++  +       Y L    T  E  ++  +AV                
Sbjct: 114 NDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTK 173

Query: 49  CKRSGVGLGTSVLVLSAGPIGL 70
                +     +L    G   +
Sbjct: 174 LTLDQINKAFELLSSGQGVRSI 195

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 40.7 bits (94), Expect = 5e-06
 Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 2/58 (3%)

Query: 8   PHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSG-VGLGTSVLVL 63
                 SQ+         K+   + L+E      PL     A           +VL L
Sbjct: 142 LGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 39.9 bits (92), Expect = 9e-06
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY 89
          + LE   ++ + +  G H  + + + +G+SV+V+  G +GL+ I  AK  GA  I     
Sbjct: 1  MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 39.7 bits (91), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 8   PHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTSVLV 62
              G  ++F + +     KLP  + +E     L+ +   +   ++  V LG +VL+
Sbjct: 116 NIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEKGEV-LGRAVLI 170

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 38.4 bits (88), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTS 59
           + FCATPP  GNL+++Y HAADFC+KLPD+  +++       L   V A + +      +
Sbjct: 110 LTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNT 169

Query: 60  VLVLSA 65
           + V+ +
Sbjct: 170 IKVMIS 175

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.3 bits (88), Expect = 3e-05
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
             +       G LS++     D+   LP +L+L+E  + + L +            G   
Sbjct: 89  TSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEE-TPGALK 147

Query: 61  LVLSAGPIGLVTI 73
            +L     G V +
Sbjct: 148 DILQNRIQGRVIV 160

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGA-LLEPLAVGVHACKRSGVGLGTS 59
                    +G  +++     ++   LP ++        L+ +   +    R+G   G  
Sbjct: 113 SQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RAGQIEGRI 171

Query: 60  VLVL 63
           VL +
Sbjct: 172 VLEM 175

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 36.9 bits (84), Expect = 9e-05
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 9/58 (15%)

Query: 19  HAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAA 76
            A      LP  + L +      +    H        +  ++L++   P  L+  +  
Sbjct: 128 DADMNLAILPKDVDLSK-----LVTHVYHGFDH----IEEALLLMKDKPKDLIKAVVI 176

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 8   PHHGNLSQFYKH-AADFCYKLPDHLTLEEGAL-LEPLAVGVHACKRSGVGLGTSVLV 62
              G  +++       + YKL     +    + LE     +   +     +G  VL+
Sbjct: 121 NFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKA-IGRQVLI 176

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.1 bits (77), Expect = 8e-04
 Identities = 10/63 (15%), Positives = 19/63 (30%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
             +     H G  S++ +   ++   LP  L      +              G   G +V
Sbjct: 89  TGYEIGVTHFGGYSEYARLHGEWLVPLPKGLERIAQEISLAELPQALKRILRGELRGRTV 148

Query: 61  LVL 63
           + L
Sbjct: 149 VRL 151

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 2/50 (4%)

Query: 6   TPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVG 55
                G  SQ       +  ++       E    + +        R  V 
Sbjct: 120 PGHTLGGYSQQIVVHERYVLRIRVAD--IEMIRADQINEAYERMLRGDVK 167

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 6/84 (7%), Positives = 15/84 (17%), Gaps = 23/84 (27%)

Query: 1   MVFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSV 60
            V         + + +     +   K+      ++                         
Sbjct: 130 GVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYA------------------- 170

Query: 61  LVLSAGPIGLVTILAAKAYGARVI 84
                  I    I + K    + I
Sbjct: 171 ----FDEINQAAIDSRKGITLKPI 190

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 9   HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVL 63
              + SQ+   +     ++ D   L+       L           +  G S+  +
Sbjct: 146 GVSSFSQYTVVSEANLARVDDEFDLDLLVTH-ALPFESINDAIDLMKEGKSIRTI 199

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 32.6 bits (73), Expect = 0.004
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query: 58 TSVLVLSAGPIGLVTILAAKAYGARVICVCK 88
          T VLV+ AG  G    LAAK  GA VI V K
Sbjct: 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDK 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.79
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.79
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.78
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.76
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.76
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.76
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.75
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.75
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.75
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.75
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.75
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.73
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.72
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.72
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.71
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.71
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.69
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.68
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.68
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.67
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.66
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.65
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.63
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.63
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.55
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.55
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.51
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.5
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.4
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.35
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.3
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.28
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.26
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.24
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.19
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.18
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.16
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.1
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.06
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.99
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.9
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.9
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.84
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.83
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.77
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.75
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.69
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.62
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.27
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.26
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.13
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.02
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.97
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.96
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.93
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.9
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.87
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.84
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	97.83
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.81
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.79
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.78
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.77
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.75
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.73
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.73
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.73
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.71
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.7
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.7
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.69
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.69
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.68
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.68
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.68
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.68
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.68
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.67
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.66
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.65
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.65
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.64
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.63
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.63
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.62
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.62
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.61
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.61
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.59
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.59
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.59
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.59
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.58
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.57
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.57
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.57
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.56
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.55
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.55
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.52
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.52
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.52
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	97.47
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.47
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.46
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.43
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.43
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.41
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.4
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.4
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.39
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.38
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.38
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.35
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.34
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.34
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.33
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.32
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.32
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.31
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.29
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.28
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.27
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.27
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.26
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.26
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.25
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.24
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.24
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.24
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.23
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.23
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.22
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.19
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.19
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	97.17
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.16
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.14
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.13
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	97.13
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.12
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.11
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.11
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.1
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.1
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.09
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.09
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.09
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.08
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.05
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.03
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.01
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.01
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.0
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.0
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.0
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.99
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.99
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.99
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.99
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.99
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.98
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.97
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.97
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.93
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.93
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.91
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.91
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.88
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.87
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.85
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.83
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.83
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.82
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.81
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.8
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.79
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.79
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.78
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.78
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.77
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.77
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	96.76
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.73
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.71
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.69
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.68
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.67
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.66
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.66
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.65
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.64
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.64
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.64
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.63
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.62
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.61
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.6
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.6
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.59
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.59
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.58
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.58
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.57
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	96.56
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.54
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.53
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.52
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.52
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.51
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.5
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.48
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.47
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.42
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.41
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	96.39
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	96.36
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.35
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.35
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.32
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.31
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.31
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.3
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.29
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.27
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.27
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.23
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.23
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.21
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.2
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.19
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.18
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.17
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.17
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.15
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.15
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.11
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.11
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.11
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.11
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.09
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.09
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.08
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.05
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	96.02
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.02
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.01
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.01
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.01
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	95.99
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.98
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	95.98
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.93
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.92
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.91
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.91
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.9
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.88
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.88
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.85
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	95.83
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.82
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.8
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.74
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.72
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.71
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	95.71
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.7
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.69
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.68
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.68
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.63
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.62
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.6
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	95.58
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.56
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.5
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.49
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.47
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.46
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	95.37
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.35
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.32
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.29
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.29
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	95.27
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.18
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	95.06
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	95.06
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.05
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.99
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	94.96
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.94
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	94.78
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.72
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.62
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.59
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.58
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.57
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.55
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	94.53
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.5
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.49
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.47
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.47
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.43
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.39
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.36
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.3
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.21
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	94.11
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.99
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.99
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.94
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	93.93
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	93.92
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	93.82
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.76
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	93.72
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.69
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.54
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	93.42
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.39
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	93.33
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	93.26
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.24
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.2
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.16
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	93.09
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.04
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	92.97
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	92.96
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.95
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.93
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.87
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.77
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	92.69
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	92.64
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	92.46
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	92.45
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	92.38
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.27
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.15
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.95
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	91.83
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.68
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.43
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	91.4
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.11
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.84
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.47
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	90.42
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	90.38
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	90.36
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.16
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.1
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	89.98
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	89.96
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.93
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	89.75
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	89.67
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	89.61
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.5
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.41
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.34
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.29
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	89.2
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.01
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	88.9
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.78
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	88.74
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	88.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	88.57
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.52
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	88.41
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	88.15
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.07
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	87.87
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.67
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.62
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	87.6
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	87.43
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.08
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	87.08
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.04
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	87.0
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	86.83
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.67
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	86.12
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	86.07
d1qb7a_	236	Adenine PRTase {Leishmania donovani [TaxId: 5661]}	85.78
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	85.74
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	85.57
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.57
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	85.4
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	84.75
d1g2qa_	178	Adenine PRTase {Baker's yeast (Saccharomyces cerev	84.61
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	83.55
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.53
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.4
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	83.38
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.27
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	83.21
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	82.48
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	82.45
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	82.32
d1p3da2	152	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.24
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.21
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	82.17
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	81.99
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	81.66
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	81.35
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	81.28
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	80.41
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	80.16
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	80.04
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	80.01

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.7e-19  Score=107.91  Aligned_cols=70  Identities=56%  Similarity=0.898  Sum_probs=66.4

Q ss_pred             CChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+++|++++|++++||++++.++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         1 vS~e~Aal~epla~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2           1 VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999998799999999999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.79  E-value=2.4e-19  Score=107.86  Aligned_cols=69  Identities=61%  Similarity=0.928  Sum_probs=65.2

Q ss_pred             CChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+|+|++++|++++||++++.++++|++|+|+|+|++|++++|+++.+|++ |++++++++|+++++++
T Consensus         1 VS~e~Aal~ePla~a~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~-vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2           1 VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             SCHHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcccccchhhHhhHhhhccc-ccccchHHHHHHHHHHc
Confidence            5789999999999999999999999999999999999999999999999997 99999999999998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.78  E-value=2.4e-19  Score=108.72  Aligned_cols=70  Identities=27%  Similarity=0.410  Sum_probs=65.6

Q ss_pred             CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+|+|+++ ++++|+|++++..++++|++|+|+|+|++|++++|++|.+|+++|++++++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            578999998 9999999999999999999999999999999999999999997799999999999998763

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=1.6e-18  Score=103.92  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++++++|.+ +++.|+|+++++.++++|++|+|+|+|++|++++|++|.+|++ |++++++++|+++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~-Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLH-VAAIDIDDAKLELARKL   70 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCc-cceecchhhHHHhhhcc
Confidence            578999988 9999999999889999999999999999999999999999987 99999999999998864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.4e-18  Score=104.95  Aligned_cols=69  Identities=26%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+++||.+ +++.|||++++..++++|++|+|+|+ |++|++++|++|.+|++ |++++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~-vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKLALPLAL   71 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGSHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccc-ccccccccccccccccc
Confidence            578999988 89999999998899999999999997 99999999999999998 99999999999988764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.76  E-value=1.8e-18  Score=104.43  Aligned_cols=69  Identities=23%  Similarity=0.290  Sum_probs=63.9

Q ss_pred             Chhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         32 TLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        32 ~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |+|+||.+ +.+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            57889988 8999999998 678999999999999999999999999999998899999999999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.75  E-value=3.1e-18  Score=103.76  Aligned_cols=69  Identities=26%  Similarity=0.331  Sum_probs=64.6

Q ss_pred             Chhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         32 TLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        32 ~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++++++++ +.+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            56888888 9999999998 789999999999999999999999999999998899999999999999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.75  E-value=3.3e-18  Score=103.56  Aligned_cols=68  Identities=24%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             hhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         33 LEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        33 ~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |.+|+++ +.+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            4567877 9999999998 788999999999999999999999999999998899999999999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.7e-18  Score=103.31  Aligned_cols=68  Identities=25%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             Chhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         32 TLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        32 ~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |++.|+.+ ++..|+|+++++.++++|++|+|+|+|++|++++|++|.+|++ |++++++++|+++++++
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKREDAMKM   70 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEECCCCcchhHHHHhhhcccc-ccccccchhHHHHhhcc
Confidence            45667766 8999999999889999999999999999999999999999998 99999999999998763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.3e-18  Score=103.32  Aligned_cols=69  Identities=29%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             CChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+++||.+ +++.|||+++ +..++++|++|||+|+ |++|++++|+++.+|++ |++++++++|+++++++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~-vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHT
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcc-ccccccccccccccccc
Confidence            578999988 9999999998 6789999999999997 99999999999999998 99998999999988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.75  E-value=3.6e-18  Score=103.60  Aligned_cols=69  Identities=23%  Similarity=0.267  Sum_probs=64.8

Q ss_pred             Chhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         32 TLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        32 ~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++++|+++ +.+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+.+|++++.+++|+++++++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            58899999 9999999998 778999999999999999999999999999988899999999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.4e-18  Score=103.46  Aligned_cols=69  Identities=20%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             CChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+++||.+ +++.|||+++ +..++++|++|+|+|+ |++|++++|+++..|++ |++++++++|.++++++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCe-EeecccchHHHHHHHhc
Confidence            578999988 9999999999 5678999999999987 78999999999999998 99999999999998763

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.72  E-value=1.9e-17  Score=100.09  Aligned_cols=69  Identities=26%  Similarity=0.319  Sum_probs=64.1

Q ss_pred             Chhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         32 TLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        32 ~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |+++||.+ +.+.|+|+++ +..++++|++|+|+|+|++|++++++++.+|+.+|++++++++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            57889988 8999999998 789999999999999999999999999999988899999999999998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.72  E-value=1.5e-17  Score=99.58  Aligned_cols=69  Identities=25%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|+++||.+ +++.|+|++++..++++|++|+|+|+|++|++++|+++..|++ |++++++++|+++++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~-v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCe-EeccCCCHHHhhhhhhc
Confidence            578999988 8999999999999999999999999999999999999999997 99999999999998864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.4e-17  Score=88.42  Aligned_cols=69  Identities=10%  Similarity=0.075  Sum_probs=61.4

Q ss_pred             CChhhhhcc-hhHHHHHHHH----HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHAC----KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~----~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|++||+.+ .+..|||.++    +....+++++|+|+|+ |++|.+++|++|.+|++ |+++.++++|.++++++
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~-Vi~~t~s~~k~~~~~~l   75 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTHEYLKSL   75 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCe-EEEEECCHHHHHHHHHC
Confidence            578899988 8899998876    3456789999999998 99999999999999999 99999999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.9e-17  Score=100.52  Aligned_cols=68  Identities=26%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             hhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         33 LEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        33 ~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++.++.+ ++..|||+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            3445555 8899999999 567899999999999999999999999999997799999999999998874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.5e-17  Score=98.98  Aligned_cols=69  Identities=22%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      .+++.++.+ ++..|+|++++..++++|++|+|+|+|++|++++|++|.+|++ +++++++++|+++++++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~-~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHH
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEeccchHHHHHHHHhhccccc-chhhccchhHHHHHhcc
Confidence            345566655 8889999999999999999999999999999999999999999 77888999999988763

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.69  E-value=1.1e-16  Score=96.48  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=64.4

Q ss_pred             Chhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         32 TLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        32 ~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      |+++|+.+ +++.|+|+++ +..++++|++|+|+|+|++|+++++.++..|..+|++++++++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            57889988 8999999998 788999999999999999999999999999998899999999999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.68  E-value=7.5e-17  Score=97.40  Aligned_cols=70  Identities=30%  Similarity=0.394  Sum_probs=63.3

Q ss_pred             CChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++++.++.+ +.+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            356778888 8899999997 788999999999999999999999999999999888999999999998763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=1.6e-16  Score=97.66  Aligned_cols=65  Identities=34%  Similarity=0.489  Sum_probs=60.0

Q ss_pred             hhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         36 GALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        36 aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +++.++++|+|++++..++++|++|+|+|+|++|++++++++.+|+.+|++++.+++|+++++++
T Consensus         5 ~~l~d~~~ta~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2           5 TCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             GGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhcccHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            34449999999999999999999999999999999999999999998899999999999998864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=1.9e-16  Score=95.03  Aligned_cols=69  Identities=22%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             CChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         31 LTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++.+|+.+ +++.|||+++++.++++|++|+|+|+ |++|++++|+++.+|..+|++++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence            478889988 89999999999999999999999996 9999999999999998779999999999999875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.66  E-value=8.8e-17  Score=97.49  Aligned_cols=69  Identities=16%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             CChhhhhcc-hhHHHHHHHH----HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         31 LTLEEGALL-EPLAVGVHAC----KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~----~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +|++|||.+ .++.|||+++    +..+.++|++|||+|+ |++|.+++|++|..|++ |+++.++++|.++++++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~-Viat~~s~~k~~~~~~l   75 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEHDYLRVL   75 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCHHHHHHT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCc-eEEecCchHHHHHHHhc
Confidence            589999999 8999999775    3477889999999998 99999999999999999 99999999999998764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.5e-16  Score=96.36  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             hhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         34 EEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        34 ~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ||||.+ +++.|||+++ +..++++|++|||+|+ |++|++++|+++.+|++ +++++++++|.++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~~~~~l~~~   69 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKREMLSRL   69 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHTT
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcccccc-ceeeecccccccccccc
Confidence            467777 9999999998 7788999999999997 99999999999999998 88888999999988764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.63  E-value=1.1e-15  Score=91.94  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             hhhhhcc-hhHHHHHHHHHh-c-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         33 LEEGALL-EPLAVGVHACKR-S-GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        33 ~~~aa~~-~~~~ta~~~~~~-~-~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +.++|.+ +++.|+|+++++ . .+++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            3456666 999999999954 3 589999999999999999999999999998799999999999998764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.63  E-value=5.1e-16  Score=94.19  Aligned_cols=63  Identities=27%  Similarity=0.249  Sum_probs=57.0

Q ss_pred             hcchhHHHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         37 ALLEPLAVGVHAC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        37 a~~~~~~ta~~~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      ++-+++.|||+++ +..++++|++|+|+|+ |++|++++|++|..|++ ||+++++++|.++++++
T Consensus         9 ~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~-vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2           9 TIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             TTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCE-EEEeCCCHHHHHHHHhh
Confidence            3338899999999 7889999999999998 89999999999999998 99999999999988764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.55  E-value=7.1e-15  Score=89.60  Aligned_cols=62  Identities=11%  Similarity=0.035  Sum_probs=53.8

Q ss_pred             CChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         31 LTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVL-SA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~-G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|++|||.+ +++.|||+++ +..++++|++++|+ |+ |++|++++|++|.+|++ ||++.+++++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~-vI~~v~~~~~   66 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPN   66 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCe-EEEEEecccc
Confidence            588999988 8999999999 67899999999997 55 89999999999999998 7777655443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=5.8e-15  Score=89.41  Aligned_cols=68  Identities=10%  Similarity=0.070  Sum_probs=58.1

Q ss_pred             CChhhhhcc-hhHHHHHHHH---Hhc-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         31 LTLEEGALL-EPLAVGVHAC---KRS-GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        31 ~~~~~aa~~-~~~~ta~~~~---~~~-~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|+.+|+.+ ++..|||+++   ... ..+++++|||+|+ |++|.+++|++|.+|++ |+++.++++|.+.+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~-Via~~~~~~k~~~~~~   74 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTHEYLKS   74 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHHH
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCC-eEEEecchhHHHHHHh
Confidence            578899988 8999999775   233 4455679999998 99999999999999999 9999999999998875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.3e-14  Score=88.37  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             CChhhhhcchhHHHHHHHH-HhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         31 LTLEEGALLEPLAVGVHAC-KRSGVGLG--TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        31 ~~~~~aa~~~~~~ta~~~~-~~~~~~~g--~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.+.++-.+..|||+++ +..++++|  ++|||+|+ |++|++++|++|.+|+++|++++.++++...+
T Consensus         2 ~~~~~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l   72 (187)
T d1vj1a2           2 LSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL   72 (187)
T ss_dssp             GGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH
T ss_pred             ccHHHHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh
Confidence            5677777558899999999 77888887  88999997 99999999999999998777777776665543

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.50  E-value=3.6e-15  Score=90.22  Aligned_cols=61  Identities=36%  Similarity=0.576  Sum_probs=55.8

Q ss_pred             cCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC
Q psy16556          5 ATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA   65 (100)
Q Consensus         5 ~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~   65 (100)
                      +....+|+|+||+++|+++++++|+++++++++.+ +++.|+|++++..++++|++|+|+|+
T Consensus       114 ~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         114 ATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMIS  175 (178)
T ss_dssp             TBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEE
T ss_pred             eccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence            34456799999999999999999999999999988 89999999999999999999999975

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=2.4e-13  Score=81.53  Aligned_cols=59  Identities=15%  Similarity=0.018  Sum_probs=49.1

Q ss_pred             hHHHHHH---HH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         41 PLAVGVH---AC-KRSGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        41 ~~~ta~~---~~-~~~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      +..|||.   ++ +....+++++|||+|+ |++|.+++|++|.+|++ |+++.++++|.++++++
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~-Viat~~s~~k~~~~~~l   67 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAADYLKQL   67 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCc-eEEEecCHHHHHHHHhh
Confidence            3456664   44 3456677889999998 99999999999999999 99999999999988753

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.35  E-value=6.6e-13  Score=79.72  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=48.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLV   62 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli   62 (100)
                      .+|+|+||+++|+++++++|++++++.++.+ +++.|+|++++..++ .|++|||
T Consensus       117 ~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al~~~~~-~G~~VlI  170 (171)
T d1h2ba1         117 IDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEKGEV-LGRAVLI  170 (171)
T ss_dssp             BCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHHHTTCC-SSEEEEE
T ss_pred             cccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHHHhcCC-CCCEEEe
Confidence            3799999999999999999999999877755 999999999988888 8999998

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.6e-13  Score=80.06  Aligned_cols=63  Identities=44%  Similarity=0.829  Sum_probs=52.9

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCH
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGP   67 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~   67 (100)
                      +++....+|+|+||+++++++++++|++++++++++ +++++++++++..++++|++|+| |+||
T Consensus       118 ~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~-~pl~~a~~a~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         118 FCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHR-FPLEKALEAFETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             ETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEE-EEGGGHHHHHHHHHTTCCSEEEE-ECCT
T ss_pred             eeecccccccceEEEEEchHHEEECCCCCCHHHHHH-HHHHHHHHHHHHhCCCCCCEEEE-EeCC
Confidence            344555689999999999999999999999988765 46677888888888999999988 7765

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=9.8e-13  Score=75.94  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEE
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVL   63 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~   63 (100)
                      +|++..+ +|+|+||++++++.++++|+++++++|+.+ .++.|||+++ +++  ..|++||++
T Consensus        71 ~V~~~~~-~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          71 RYAALVP-QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             EEEEECS-SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             eEEEEec-cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            4566654 799999999999999999999999999988 8999999999 444  458988863

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.7e-12  Score=74.47  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=54.4

Q ss_pred             eeecCCCCCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEE
Q psy16556          2 VFCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVL   63 (100)
Q Consensus         2 ~~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~   63 (100)
                      +|++....+|+|+||+.++++.++++|+++++++|+.+ ....|+++++ .....+.|+++||+
T Consensus        87 rV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          87 RVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             EEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             cccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            45666666899999999999999999999999999987 7888999887 77888999999974

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.24  E-value=2.5e-12  Score=75.76  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEEc
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVLS   64 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~G   64 (100)
                      .+|+|+||+++|+++++++|++++. +|+.+ .+..|++.++ ...+++ |++|||+|
T Consensus        97 ~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          97 HFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             BCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             cCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            4699999999999999999999985 55555 7778887777 667775 99999976

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.19  E-value=6.4e-12  Score=76.93  Aligned_cols=54  Identities=20%  Similarity=0.043  Sum_probs=49.4

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH-HhcCCCCCCEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC-KRSGVGLGTSVLVL   63 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vli~   63 (100)
                      +|+|+||++++++.++++|+++++++++.+ +++.|+++++ .....+.|++|||+
T Consensus       144 ~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         144 TSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             cCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            599999999999999999999999998877 9999999999 55778899999984

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.18  E-value=1.5e-11  Score=73.38  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=46.2

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcC
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSA   65 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~   65 (100)
                      .+|+|+||+++|+++++++|++++++.|+ +.+..++++.+....+ +|++|||+|.
T Consensus       116 ~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~~~~~~~~~~~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         116 VDGGYAEYCRAAADYVVKIPDNTIIEVQP-LEKINEVFDRMLKGQI-NGRVVLTLED  170 (171)
T ss_dssp             BCCSSBSEEEEEGGGCEECCTTCCEEEEE-GGGHHHHHHHHHTTCC-SSEEEEECCC
T ss_pred             ccCccccceEecHHHEEECCCCCCHHHHH-HHHHHHHHHHHHhcCC-CCCEEEEeCC
Confidence            47999999999999999999999987665 4567788888766666 4999999984

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1e-11  Score=75.74  Aligned_cols=55  Identities=11%  Similarity=0.241  Sum_probs=49.7

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcchh-HHHHHHHHHhcCCCCCCEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALLEP-LAVGVHACKRSGVGLGTSVLVL   63 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~-~~ta~~~~~~~~~~~g~~vli~   63 (100)
                      .+|+|+||++++++.++++|+++++++|+++++ +.+||++++..++++|++|+|.
T Consensus       131 ~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         131 SQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  186 (192)
T ss_dssp             CCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             cccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            369999999999999999999999998887754 6799999999999999999975

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.10  E-value=6.2e-11  Score=70.97  Aligned_cols=54  Identities=11%  Similarity=0.182  Sum_probs=46.4

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEE
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVL   63 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~   63 (100)
                      .+|+|+||+++++++++++|++++++.++.+ .++.++++.++...+ +|++|||+
T Consensus       121 ~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~~~g~~-~G~~VLVl  175 (175)
T d1llua1         121 VNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQMRAGQI-EGRIVLEM  175 (175)
T ss_dssp             BCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHHHTTCC-SSEEEEEC
T ss_pred             cccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHHHhCCC-CCCEEEeC
Confidence            4789999999999999999999998877755 888999988876555 69999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.8e-10  Score=66.38  Aligned_cols=60  Identities=20%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhh--cc-hhHHHHHHHHHhcCCCCCCEEEE
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGA--LL-EPLAVGVHACKRSGVGLGTSVLV   62 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa--~~-~~~~ta~~~~~~~~~~~g~~vli   62 (100)
                      |+......|+|+||++++++.++++|+++++++++  .+ ....++++++...++++|++|||
T Consensus        84 V~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          84 VVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             EEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             eeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            44444457999999999999999999999887554  33 56678888876678999999998

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=1.2e-13  Score=82.28  Aligned_cols=59  Identities=22%  Similarity=0.272  Sum_probs=47.0

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcC-CH
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSA-GP   67 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~-G~   67 (100)
                      .+|+|+||+++|++.++++|+++++++|+.+ ....|+|.++...+...+++|||.|+ |.
T Consensus        97 ~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1          97 RDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRIQGR  157 (162)
T ss_dssp             BCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTHHHHHHHTTTTCCSSE
T ss_pred             cccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCcce
Confidence            4799999999999999999999999999988 77778877653334445566777766 53

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.90  E-value=5.6e-14  Score=84.29  Aligned_cols=71  Identities=11%  Similarity=-0.014  Sum_probs=54.6

Q ss_pred             eecCCCCCCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHH--HhcCCCCCCEEEEEcC--CHHHHHHHH
Q psy16556          3 FCATPPHHGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHAC--KRSGVGLGTSVLVLSA--GPIGLVTIL   74 (100)
Q Consensus         3 ~~~~~~~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~--~~~~~~~g~~vli~G~--G~~G~~~~~   74 (100)
                      +......+|+|+||+.+|+++++++|++++.+.++. ....|+|+++  ...++++|++|+|+|+  |++|++++|
T Consensus       100 v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a~~-~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         100 VIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGK-PNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTC-SCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eeccccccccccceeeehhhhccCCCccchhhhhcc-chHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            333444579999999999999999999876555544 4556778776  2467999999999984  679987765

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.90  E-value=5.8e-10  Score=68.01  Aligned_cols=54  Identities=11%  Similarity=-0.035  Sum_probs=46.9

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHH-hcCCCCCCEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACK-RSGVGLGTSVLVL   63 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vli~   63 (100)
                      +|+|+||+++|+++++++|+++++++++.+ +++.+++.+++ ...-+.+++|||+
T Consensus       142 ~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         142 TSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             cccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            599999999999999999999999999877 88999999984 4445678888874

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=8e-10  Score=66.79  Aligned_cols=52  Identities=15%  Similarity=0.093  Sum_probs=44.4

Q ss_pred             CCCCcccceEEec-CCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEc
Q psy16556          8 PHHGNLSQFYKHA-ADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLS   64 (100)
Q Consensus         8 ~~~G~~ae~~~~~-~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G   64 (100)
                      ..+|+|+||++++ ++.++++|++++.++     ++++|+++++..++++|++|+|+-
T Consensus       131 ~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~-----pl~~A~~a~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         131 HLRGCYSSHIVLDPETDVLKVSEKITHRL-----PLKEANKALELMESREALKVILYP  183 (184)
T ss_dssp             CCCSSSBSEEEECTTCCEEEECTTCCEEE-----EGGGHHHHHHHHHHTSCSCEEEEC
T ss_pred             CcceeCcCcEEechhHcEEECCCCCCHHH-----HHHHHHHHHHHhCCCcCCEEEEee
Confidence            3579999999985 578999999998653     566788999999999999999973

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.83  E-value=3e-09  Score=64.62  Aligned_cols=55  Identities=11%  Similarity=0.115  Sum_probs=47.5

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      .|+|+||.++++..++++|++++++++                       +++.|+|++|++++|+++.+|+++|+++
T Consensus       139 ~g~fae~~~v~~~~~~~ip~~i~~~~~-----------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         139 QSSFATYALSRENNTVKVTKDFPFDQL-----------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTCCGGGG-----------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             ccccceeEEEehHHEEECCCCCCcccE-----------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            378999999999999999999987653                       4556779999999999999999977765

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.77  E-value=2.5e-13  Score=83.61  Aligned_cols=70  Identities=23%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCCCcccceEEecCC--ceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q psy16556          8 PHHGNLSQFYKHAAD--FCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA   81 (100)
Q Consensus         8 ~~~G~~ae~~~~~~~--~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~   81 (100)
                      ..+|+|+||+++|..  .++++||+.++.+++.+ +++.+++++++..+.+.++    +|+|++|++++|.+|.+|+
T Consensus       129 ~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         129 DWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CBCCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECGGGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             ccccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHHHhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            347999999999853  69999998666665555 8888888887555544443    5889999999999999885

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=4.6e-09  Score=61.19  Aligned_cols=41  Identities=20%  Similarity=0.231  Sum_probs=35.1

Q ss_pred             CCCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHH
Q psy16556          9 HHGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHAC   49 (100)
Q Consensus         9 ~~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~   49 (100)
                      .+|+|+||+++|+++++++|+++|+++|+.+ .+..||+..+
T Consensus        94 ~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          94 HWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             BCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             CCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999988 6666664443

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.69  E-value=3.8e-09  Score=64.39  Aligned_cols=53  Identities=15%  Similarity=0.092  Sum_probs=44.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEc
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLS   64 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G   64 (100)
                      +|+|+||++++++.++++|++++++.++.+ +++.+.+++++.  +++|++|.|+.
T Consensus       147 ~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k~G~~V~vi~  200 (202)
T d1e3ia1         147 VSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAIDL--MKEGKSIRTIL  200 (202)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH--HHTTCCSEEEE
T ss_pred             cCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            499999999999999999999999987766 778888888754  46789888763

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.62  E-value=4.1e-08  Score=58.46  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             ecCCCCCCcccceEEecCCc-eEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEE
Q psy16556          4 CATPPHHGNLSQFYKHAADF-CYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLV   62 (100)
Q Consensus         4 ~~~~~~~G~~ae~~~~~~~~-~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli   62 (100)
                      +|.. .+|+|+||+++++.. ++++|+..+.+.++.. +++.+++++++..++ .|++|||
T Consensus       118 ~g~~-~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         118 LGIN-FDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             BTTT-BCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHHHTTCC-CSEEEEE
T ss_pred             eeec-cccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHHHhhcc-cCCceEC
Confidence            3443 479999999997654 6677766655555554 799999999988777 5899987

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.27  E-value=1.2e-06  Score=51.57  Aligned_cols=51  Identities=12%  Similarity=0.020  Sum_probs=44.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .++..++.++++|+|+|+|+.+.+++..++..|+++|.++.++++|.+.+.
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~   58 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA   58 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHH
Confidence            456677778899999999999999999999999977999999998876653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.26  E-value=1.2e-06  Score=52.50  Aligned_cols=43  Identities=26%  Similarity=0.286  Sum_probs=39.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhcC
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKKI  100 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~l  100 (100)
                      .-+|+|+|+|.+|+.++..|+.+|+. |.+.|.++++++.++++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~-V~v~D~~~~~~~~l~~l   71 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAATKEQVESL   71 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHHHHT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCE-EEEEeccHHHHHHHHHh
Confidence            46899999999999999999999999 99999999999888753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.13  E-value=3.4e-06  Score=49.80  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..+|+|+|+|.+|+.+++.++.+|+. |.+.|.++++++.+++
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~-V~~~D~~~~~l~~l~~   73 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDINVERLSYLET   73 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCE-EEEEeCcHHHHHHHHH
Confidence            457899999999999999999999999 9999999999987653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.02  E-value=6.9e-06  Score=49.07  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      --+|++++|.|+ |++|..+++.+...|++ |+.+++++++.+.+.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAA   64 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccc-hhhcccchHHHHHHH
Confidence            447999999998 99999999999999998 999999998886653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2e-05  Score=46.18  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=40.7

Q ss_pred             HHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         47 HACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        47 ~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++++..+ ..+|++|+|+|+|+.+.+++..+...|.+ |+++.|+++|.+.+
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~-i~I~nRt~~ka~~l   57 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEEL   57 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHH
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceE-EEeccchHHHHHHH
Confidence            3454334 46789999999999999999998999997 99999998886654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.96  E-value=6.8e-06  Score=47.81  Aligned_cols=42  Identities=19%  Similarity=0.097  Sum_probs=37.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+++|+|+|+|.+|..+++.+...|.+ |+++++++++.+.+.
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~-V~v~dr~~~~a~~l~   42 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIK-VTVACRTLESAKKLS   42 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECChHHHHHHH
Confidence            368999999999999999999989998 999999999887654

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.93  E-value=2.3e-06  Score=51.59  Aligned_cols=53  Identities=13%  Similarity=0.041  Sum_probs=38.7

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEc
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLS   64 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G   64 (100)
                      .|+|+||+++|+.+++++|+.++++.++.. .+......+.  ..+++|++|+|+.
T Consensus       143 ~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g~--~~l~~G~~VaVi~  196 (198)
T d2jhfa1         143 TSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINEGF--DLLRSGESIRTIL  196 (198)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHH--HHHHTTCCSEEEE
T ss_pred             CCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhhCC--ceeeCCCEEEEEE
Confidence            489999999999999999999988765544 4444333332  2356888888763

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=1e-05  Score=43.00  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|++|+|+|.|..|+.+++++...|.+ |++.|.+++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcC
Confidence            578999999999999999999999999 999987543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=3.5e-05  Score=45.63  Aligned_cols=51  Identities=20%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             HHHHhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         47 HACKRSGV-GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        47 ~~~~~~~~-~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+++..+. -.+++|+|+|+|+.+.+++..+...|+++++++.+++++.+.+
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~   58 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA   58 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence            34543333 4689999999999999999999999998899999987766543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.85  E-value=1.1e-05  Score=47.53  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++|+|+|+|+.|+.++..++..|.+.|.++++++.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            3689999999999999999999999855888877653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.84  E-value=2.1e-05  Score=44.19  Aligned_cols=39  Identities=10%  Similarity=0.065  Sum_probs=35.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|+|.|.|.+|..+++.+...|.+ |++++.++++.+.+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~   40 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDKDICKKAS   40 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC-cceecCChhhhhhhh
Confidence            689999999999999999999998 999999999887654

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=9.8e-06  Score=48.16  Aligned_cols=45  Identities=13%  Similarity=0.031  Sum_probs=34.8

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcchhHHHHHHHHHhcCCCC
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGL   56 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~   56 (100)
                      +|+|+||+++|+++++++|+..  ..++...++.++++++.++.++-
T Consensus       124 ~GgfaEy~~v~~~~~~~ip~~~--~~~~~a~~l~~a~~a~~~a~v~~  168 (179)
T d1uufa1         124 LGGYSQQIVVHERYVLRIRVAD--IEMIRADQINEAYERMLRGDVKY  168 (179)
T ss_dssp             CCSSBSEEEEEGGGCEECCCCC--EEEECGGGHHHHHHHHHTTCSSS
T ss_pred             ccccceEEEechHHEEECCCCC--cChhHhchhHHHHHHHHHhCccc
Confidence            5899999999999999999654  23344467888999987666543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.81  E-value=2.3e-05  Score=45.83  Aligned_cols=41  Identities=17%  Similarity=0.076  Sum_probs=36.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++++.|+|+|.+|+.++..+...|.+ |.+.++++++.+.++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~-V~~~~r~~~~~~~~~   41 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQS-VLAWDIDAQRIKEIQ   41 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            47899999999999999999999998 999999998887654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.8e-05  Score=48.06  Aligned_cols=41  Identities=32%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ +++|..+++.....|++ |+.+++++++++.+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~   47 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSL   47 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHH
Confidence            6899999998 89999999999999998 99999999887654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=2.4e-05  Score=43.86  Aligned_cols=41  Identities=12%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++++|.|.|.+|..+++.+...|.+ |++++.++++.+.+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~   41 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYAS   41 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHH
Confidence            4678999999999999999999999 9999999999887654

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.77  E-value=5.8e-07  Score=54.41  Aligned_cols=52  Identities=10%  Similarity=0.048  Sum_probs=38.0

Q ss_pred             CCcccceEEecCCceEECCCCCChhhhhcc-hhHHHHHHHHHhcCCCCCCEEEEEcCCHHHH
Q psy16556         10 HGNLSQFYKHAADFCYKLPDHLTLEEGALL-EPLAVGVHACKRSGVGLGTSVLVLSAGPIGL   70 (100)
Q Consensus        10 ~G~~ae~~~~~~~~~~~~p~~~~~~~aa~~-~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~   70 (100)
                      +|+|+||+.+++..++++|++++.+..+.. ....         .+.++++|+|.|+|++|+
T Consensus       143 ~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~---------~v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         143 TSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLD---------QINKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGG---------GHHHHHHHTTTSSCSEEE
T ss_pred             CccceeeEEecHHHEEECCCCCCHHHHHHhhcchh---------hcCCCCEEEEECCCcceE
Confidence            589999999999999999999997765533 2222         223344577788887764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.3e-05  Score=48.99  Aligned_cols=43  Identities=21%  Similarity=0.130  Sum_probs=38.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      =+|++++|.|+ +++|+.++..+...|++ |+.+++++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~-Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            36899999998 89999999999999998 999999999887653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.73  E-value=2.1e-05  Score=48.15  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +++|+|+|+|+.|+.++..++..|.+ |.+++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~-V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLN-VTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCE-EEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            68999999999999999999999998 99998654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.73  E-value=3.9e-05  Score=47.81  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=36.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~-V~i~~r~~~~l~~~   46 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDEC   46 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            6899999998 89999999999999998 99999998886654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.1e-05  Score=47.87  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|+++||.|+ +++|..+++.....|++ |+.+++++++.+.+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~-Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESKLQELEK   48 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHGGGGG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHh
Confidence            6899999998 89999999999999998 9999999988776543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.72  E-value=3e-05  Score=47.38  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..++|+|+|+|+.|++++..++..|.+ |++++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~-v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVD-VDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            468999999999999999999899998 999987653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.71  E-value=0.00014  Score=42.21  Aligned_cols=47  Identities=23%  Similarity=0.261  Sum_probs=39.2

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +...--.+++++|+|+|.+|..+++.+...|+++++++.++.+|.+.
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~   63 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVE   63 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHH
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHH
Confidence            33444578999999999999999999999999879999888777653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.4e-05  Score=47.35  Aligned_cols=41  Identities=22%  Similarity=0.118  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|+.+||.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~   43 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQC   43 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999999 99999998876544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=3.8e-05  Score=45.59  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +...+++|+|+|+||.|+.++..+...|.+ |++.+.++
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~-Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQ-VTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCE-EEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccc-eEEEeccC
Confidence            345679999999999999999999999998 99998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.70  E-value=4.4e-05  Score=48.04  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~-Vii~~r~~~~l~~~   65 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKAT   65 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHH
Confidence            4799999998 89999999999999999 99999998876543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.9e-05  Score=47.30  Aligned_cols=41  Identities=24%  Similarity=0.189  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.+||.|+ +++|..++..+...|++ |+.+++++++.+.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~-Vv~~~r~~~~l~~~   50 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEEL   50 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999998 99999999887654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=4.8e-05  Score=41.84  Aligned_cols=38  Identities=16%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCC-CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         54 VGLG-TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        54 ~~~g-~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +.++ .+|.|+|+|-+|++.++-++.+|.+ +++.+++++
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCC
Confidence            3444 5699999999999999999999999 888887765

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=4.7e-05  Score=46.81  Aligned_cols=41  Identities=15%  Similarity=0.068  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++-+...|++ |+.+++++++.+.+
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   45 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQ   45 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHH
Confidence            6899999998 89999999999999998 99999988877654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=5.2e-05  Score=46.79  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~   45 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSL   45 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999999 99999998877544

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.68  E-value=4.9e-05  Score=47.70  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+++++++++++.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~   45 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAK-VAVLDKSAERLAEL   45 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999998 99999998887654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.68  E-value=5.1e-05  Score=47.22  Aligned_cols=42  Identities=29%  Similarity=0.282  Sum_probs=37.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|+.++|.|+ +++|+.+++.+...|++ |+.+++++++.+.+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~   46 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAE   46 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            5899999998 89999999999999999 999999998876543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=5.3e-05  Score=46.89  Aligned_cols=41  Identities=20%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~   46 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAM   46 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            6899999998 89999999999999998 99999999887654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.67  E-value=5.5e-05  Score=48.40  Aligned_cols=45  Identities=16%  Similarity=0.094  Sum_probs=37.8

Q ss_pred             cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         52 SGVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        52 ~~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..+++|++|||.|+ |-+|..++..+...|.+ |+++.++.++.+.+
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~-V~~~vR~~~~~~~~   51 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLANL   51 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCchhHHHH
Confidence            45678999999998 99999999888888998 89888887766543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.67  E-value=5.4e-05  Score=47.27  Aligned_cols=41  Identities=17%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.+||.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~   46 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKV   46 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999999 99999999887654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=5.7e-05  Score=46.59  Aligned_cols=42  Identities=24%  Similarity=0.228  Sum_probs=37.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|++++|.|+ +++|..+++.....|++ |+.+++++++.+.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~~~l~~~~   46 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAA   46 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            5799999998 89999999999999999 999999998877653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.1e-05  Score=46.74  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=37.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+++++++++.+.+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~   47 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALE   47 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            5899999998 89999999999999999 999999998877653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=6.3e-05  Score=46.58  Aligned_cols=43  Identities=23%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -+|+.+||.|+ +++|..+++.+...|++ |+.+++++++.+.++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~   46 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEGKEVAE   46 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            46899999998 89999999999999998 999999988877654

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.64  E-value=8.7e-05  Score=42.69  Aligned_cols=51  Identities=14%  Similarity=0.047  Sum_probs=35.9

Q ss_pred             CcccceEEecCCceEECCCCCChh-----hhhcc-hhHHHH-HHHHHhcCCCCCCEEEE
Q psy16556         11 GNLSQFYKHAADFCYKLPDHLTLE-----EGALL-EPLAVG-VHACKRSGVGLGTSVLV   62 (100)
Q Consensus        11 G~~ae~~~~~~~~~~~~p~~~~~~-----~aa~~-~~~~ta-~~~~~~~~~~~g~~vli   62 (100)
                      ++|+||.+.+++.+.++|+..+..     ..+.+ .+..|| |..+ ....+.|++|++
T Consensus        89 ~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl-~~~~k~Getvv~  146 (147)
T d1v3va1          89 SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM-LNGANLGKAVVT  146 (147)
T ss_dssp             CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHH-HTTCCSSEEEEE
T ss_pred             cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHh-hCCCCCCCEEEe
Confidence            679999999999999998765433     23334 566664 4455 333567999986

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.63  E-value=6.6e-05  Score=46.71  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~   48 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDC   48 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999998 99999998887654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.63  E-value=4.1e-05  Score=48.04  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~   44 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEET   44 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999999 99999998887654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.62  E-value=7.5e-05  Score=45.09  Aligned_cols=43  Identities=26%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -.|++|+|.|.|.+|..+++++...|++ |++.+.++++.+...
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gak-vvv~d~d~~~~~~~~   67 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTERVAHAV   67 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEecchHHHHHHHH
Confidence            3689999999999999999999999999 999998888776543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.62  E-value=4.3e-05  Score=47.84  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+.+++++++++.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~l~~r~~~~l~~~   45 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEET   45 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999999998 99999999887654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=5e-05  Score=46.88  Aligned_cols=42  Identities=21%  Similarity=0.087  Sum_probs=37.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|++++|.|+ +++|..+++.....|++ |+.+++++++.+.+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~   45 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAIS   45 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH
Confidence            5889999998 89999999999999998 999999998876543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=7.6e-05  Score=46.25  Aligned_cols=41  Identities=15%  Similarity=0.055  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~   45 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEA   45 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999998 99999998876543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.59  E-value=8.3e-05  Score=46.27  Aligned_cols=41  Identities=17%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~   44 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEAS   44 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999999999 99999999887654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.59  E-value=8.3e-05  Score=46.22  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~   45 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAAT   45 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            6899999998 89999999999999999 99999998887654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=8.6e-05  Score=45.47  Aligned_cols=41  Identities=24%  Similarity=0.222  Sum_probs=36.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ +++|..+++.+...|++ |+.+++++++.+..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~~l~~~   44 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLKRS   44 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHhc
Confidence            5799999998 89999999999999999 99999998876643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8.5e-05  Score=45.92  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=37.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .|+.++|.|+ +++|..++.-....|++ |+.+++++++.+.+.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~~~l~~~~   48 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETA   48 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            5899999998 89999999888899999 999999999887543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=0.00012  Score=42.93  Aligned_cols=43  Identities=16%  Similarity=0.080  Sum_probs=35.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ..++++|+|+|+|+.+.+++..+...+ ++|+++.|+.++.+.+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l   57 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKEL   57 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHH
Confidence            457899999999999999988877655 5599999999887655

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=8e-05  Score=44.50  Aligned_cols=40  Identities=20%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|.|+|+|.+|...++++...|.+ |+..|.+++.++.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCc-EEEEECChHHHHHHH
Confidence            6899999999999999999999999 999999998776553

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.57  E-value=7.9e-05  Score=45.99  Aligned_cols=41  Identities=20%  Similarity=0.089  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         53 GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        53 ~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ..+|+.++||.|+ |++|+.++..+...|+++|+.+.+++.+
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~   46 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD   46 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccC
Confidence            4678899999998 9999999998888999767777766433

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=8.9e-05  Score=47.07  Aligned_cols=42  Identities=14%  Similarity=0.122  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -+|+.++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~~~~l~~~   52 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSA   52 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            36899999998 89999999999999998 99999998876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=5e-05  Score=47.23  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~   51 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHV   51 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            6899999998 89999999999999999 99999998887654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.56  E-value=5.8e-05  Score=47.00  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=36.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~l~~~   48 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNEC   48 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5899999998 89999999999999998 99999998887654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.55  E-value=6.1e-05  Score=46.67  Aligned_cols=42  Identities=14%  Similarity=0.009  Sum_probs=37.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+++++++++.+.+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~   47 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAA   47 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            5899999998 89999999999999999 999999988876553

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.55  E-value=6.1e-05  Score=46.78  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|+.+++.+...|++ |+++++++++.+.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~   45 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGAR-VAIADINLEAARAT   45 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5889999998 89999999999999998 99999998877654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.52  E-value=0.00011  Score=42.53  Aligned_cols=40  Identities=13%  Similarity=-0.030  Sum_probs=35.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|.|+|.|.+|...+..++..|.+ |++.++++++.+.+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~-V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY-LIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHH
Confidence            688999999999988888889998 9999999988877654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=7.3e-05  Score=46.56  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~   45 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEET   45 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5788999998 89999999999999998 99999998887654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.52  E-value=6.9e-05  Score=46.57  Aligned_cols=40  Identities=23%  Similarity=0.257  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +|+++||.|+ +++|..+++.+...|++ |+++++++++.+.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~   48 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVE   48 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
Confidence            5899999998 89999999999999998 9999998877654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.47  E-value=0.00015  Score=44.53  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++++|.|+ +++|..+++-+...|++ |+.+++++++.+..
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEA   45 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            6899999998 89999999999999999 99999998887654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.46  E-value=8.8e-05  Score=46.02  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~   46 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQL   46 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            5789999998 89999999999999999 99999998887654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=6.4e-05  Score=38.80  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ++|.|+|+|-+|++.++-++.+|.+ +.+.+.+++-
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCCCC
Confidence            4789999999999999999999999 8888766543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.43  E-value=0.00011  Score=45.65  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .....++|+|+|+|+.|+.++..+...|.+ |.+++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~-V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQ-VTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            344567999999999999999888888998 99998654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.41  E-value=0.00014  Score=45.09  Aligned_cols=41  Identities=20%  Similarity=0.045  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ +++|..++......|++ |+++.+++++.+.+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~-vii~~r~~~~~~~~   45 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLK-NFVILDRVENPTAL   45 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCS-EEEEEESSCCHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCcccHHHH
Confidence            5899999998 89999999999999999 77776766655433

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.40  E-value=0.00018  Score=43.70  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +.+++|+|+|+|+.|+.++..++..|.+ |.+++.++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~-v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYT-VHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccc-eeeEeecc
Confidence            4679999999999999999999999998 88887654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00049  Score=40.15  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=41.0

Q ss_pred             HHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         45 GVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        45 a~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+.++ +..+ +-.|++++|+|-|-+|.-+++.++.+|++ |++++.+|.+.
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp~~a   60 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDPINA   60 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHH
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCe-eEeeecccchh
Confidence            44555 4344 56899999999999999999999999999 99999988654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.39  E-value=0.00045  Score=37.77  Aligned_cols=42  Identities=14%  Similarity=0.066  Sum_probs=35.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +.....++++++|+|+|.+|+=+++.++..|.+ |..+.+.+.
T Consensus        15 ~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~~~~   56 (121)
T d1mo9a2          15 EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVRTEP   56 (121)
T ss_dssp             HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCT
T ss_pred             HHHhhCCCCEEEEECCCHHHHHHHHHHHhcchh-heEeeccch
Confidence            455667899999999999999999999999998 888877654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.38  E-value=0.00014  Score=45.00  Aligned_cols=41  Identities=12%  Similarity=-0.083  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .++.++|.|+ +++|..++..+...|++ |+++++++++.+.+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~-V~~~~r~~~~l~~~   50 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSV   50 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHH
Confidence            4788999998 89999999988899998 99999998887654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.38  E-value=0.00017  Score=43.99  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+|+|+|+.|+++..+++..|...|.+++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            6999999999999999999999755888887654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.35  E-value=0.00011  Score=45.62  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+|+|+|+.|++++..++..|.+ |.+++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~-v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGID-NVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            599999999999999999999998 999988764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.34  E-value=0.00027  Score=43.72  Aligned_cols=40  Identities=25%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      |+.+||.|+ +++|..+++.+...|++ |+++++++++.+.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~   42 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTT   42 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            677899998 89999999999999999 99999998887654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0002  Score=42.65  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .++|+|+|+ |.+|..++..+...|.+ |.++.++++|.+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~-V~~~~R~~~~~~~   42 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRLPS   42 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEEcChhhccc
Confidence            478999998 99999999988888988 9999998887643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.33  E-value=0.00014  Score=43.28  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|+|+|+|+.|+.++..++..|.++|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            599999999999999999889974498888754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.32  E-value=0.00016  Score=42.88  Aligned_cols=39  Identities=21%  Similarity=0.088  Sum_probs=34.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++|.|+|+|.+|...+.++...|.+ |+..|.+++.++.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHHHhhh
Confidence            6799999999999999888889999 99999999877654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.32  E-value=0.00026  Score=42.65  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +...++|+|+|+|..|++++..+...|.+ |.+++++
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~-V~vier~   38 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYS-VHILARD   38 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCC-EEEEeCC
Confidence            34567899999999999999999999998 9999864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.31  E-value=0.00016  Score=44.80  Aligned_cols=41  Identities=12%  Similarity=0.008  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++||.|+ |  ++|.++++.+...|++ |+.++++++..+.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~~~~~~~~   47 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRV   47 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHH
Confidence            5899999996 5  7999999999999999 99998886544444

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=0.00057  Score=41.21  Aligned_cols=52  Identities=17%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++..++++|++||-+|+|. |..++.+++..|. .+|+.++.+++..+.+++
T Consensus        66 ~~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          66 LFMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            355788999999999999977 7778888888764 359999999988877654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=0.00033  Score=43.11  Aligned_cols=41  Identities=17%  Similarity=0.177  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|++++|.|+ |  ++|..+++.+...|++ |++++++++..+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~   50 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEA   50 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESSGGGHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHH
Confidence            5899999997 5  7999999999999999 88888876655443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.27  E-value=0.00044  Score=39.90  Aligned_cols=42  Identities=17%  Similarity=0.056  Sum_probs=35.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      ++|+|+|+|.+|...+..++..|. .+|++.|++++.++.+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            369999999999999988888885 359999999998887765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.27  E-value=0.00029  Score=40.77  Aligned_cols=38  Identities=21%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             EEEEEc-CCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLS-AGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G-~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|.|+| +|.+|..+.+.+...|.+ |++.++++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            688885 599999999999999999 99999999887654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00027  Score=43.50  Aligned_cols=36  Identities=14%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++..+|+|+|+|..|+.++..+...|.+ |.+.+.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~-V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMD-VTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            5567899999999999999999999998 98887653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.26  E-value=0.00042  Score=38.06  Aligned_cols=38  Identities=13%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++..++++|+|+|.+|+=+++.++.+|.+ |.++++.+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGID-SYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhcccc-ceeeehhc
Confidence            455568999999999999999999999999 88887654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.25  E-value=0.00035  Score=38.00  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|++|+|+|+|.+|..-++.+...|++ |++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            479999999999999999999999998 77776533

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.24  E-value=0.00048  Score=40.29  Aligned_cols=42  Identities=7%  Similarity=-0.001  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      --+|++|+|+|+|+++.+++..+...|  +|.+..|+.+|.+.+
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhhhhHHHHH
Confidence            357899999999999998876665444  599999998887654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.24  E-value=0.00046  Score=38.11  Aligned_cols=38  Identities=18%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ++++++++|+|+|.+|.=++..++..|.+ |..+++++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGVH-VSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccce-EEEEeeccc
Confidence            46779999999999999999999999998 888887664

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00024  Score=43.39  Aligned_cols=37  Identities=22%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|++|||.|+ +++|..+++.....|++ |+.++.++.+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            4899999998 89999999999999999 8888776544

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.23  E-value=0.00043  Score=37.78  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .++++|+|+|.+|+=+++.+..+|.+ |.++++.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTK-VTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccE-EEEEEecce
Confidence            47899999999999999999999999 888877654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.0002  Score=43.97  Aligned_cols=43  Identities=16%  Similarity=0.016  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -+|+++||.|+ +  ++|..++..+...|++ |+.++++++..+.+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~~~~~~~~~   48 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVE   48 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH
Confidence            36899999997 6  6899999999999999 888888877665543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.22  E-value=0.0012  Score=36.35  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +...-..+++++|+|+|.+|+-+++.+..+|.+ |.++++.+.
T Consensus        23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~~   64 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILDR   64 (123)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             HHhhccCCCEEEEECChHHHHHHHHHhhccceE-EEEEEecCc
Confidence            334445678999999999999999999999999 888877653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.19  E-value=0.00041  Score=39.64  Aligned_cols=36  Identities=17%  Similarity=0.142  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~   91 (100)
                      .|++|+|+|+|..|+.+++.++..+.+ +|+++++++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            489999999999999999998888753 378777655

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.19  E-value=0.00047  Score=42.33  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      -.|.+|+|.|.|.+|..+++++...|++ +++++.++.+.+.+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~~~~~~~~~   78 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNKAAVSAA   78 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecccHHHHHHH
Confidence            4799999999999999999999999999 88888887776544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.00023  Score=43.12  Aligned_cols=39  Identities=28%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .+++||.|+ +++|..+++.+...|++ |+++++++++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~   40 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRREGEDL   40 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCCSSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcccccc
Confidence            367899998 89999999999999999 9999988776543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.16  E-value=0.00023  Score=43.71  Aligned_cols=40  Identities=25%  Similarity=0.164  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~   96 (100)
                      +|++++|.|+ +++|..+++.+...|++ |+++++++++.+.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~   46 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKG   46 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcC
Confidence            6899999998 89999999999999999 9999988776553

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.14  E-value=0.00047  Score=42.30  Aligned_cols=43  Identities=21%  Similarity=0.005  Sum_probs=34.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEecChhhhhhhhc
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGAR-VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~   99 (100)
                      .++|||.|+ +++|..+++.+...|+. +|+.+.+++++.+.+++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~   47 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence            378999998 89999998888778874 48888889888776544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.13  E-value=0.00037  Score=44.30  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++|+|+|+|..|+.++..+...|.+ |.+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~-V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQ-VHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE-EEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCC-EEEEECCC
Confidence            57899999999999999988888988 99998664

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.13  E-value=0.00012  Score=43.20  Aligned_cols=54  Identities=15%  Similarity=0.238  Sum_probs=36.3

Q ss_pred             CCCcccceEEecC--CceEECCCCCChhhhhcchhHHHHHHHHHhcCCCCCCEEEEEcCCHHHHH
Q psy16556          9 HHGNLSQFYKHAA--DFCYKLPDHLTLEEGALLEPLAVGVHACKRSGVGLGTSVLVLSAGPIGLV   71 (100)
Q Consensus         9 ~~G~~ae~~~~~~--~~~~~~p~~~~~~~aa~~~~~~ta~~~~~~~~~~~g~~vli~G~G~~G~~   71 (100)
                      .+|+|+||+++|.  .+++++|+++++++++....  ++++.+       ++.++++|+|++|++
T Consensus       116 ~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~--~~~~~~-------~~~vlv~g~gp~gl~  171 (177)
T d1jqba1         116 KDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVY--HGFDHI-------EEALLLMKDKPKDLI  171 (177)
T ss_dssp             BCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEE--ESGGGH-------HHHHHHHHHCCTTCS
T ss_pred             CChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHH--HHHHHh-------cCceEEECCCHHHhh
Confidence            4799999999986  36899999999887664411  112222       234666677776654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00019  Score=42.14  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++..|+|+|+|+.|+.++..+...|.+ |+++++.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEeec
Confidence            456899999999999999999999999 77776543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.11  E-value=0.00069  Score=37.93  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..++++++++|+|+|.+|+=++..++..|.+ |.++++.+.
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~~~   69 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTAAR   69 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCcc-eeeeeeccc
Confidence            3456789999999999999999999999998 888877654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.11  E-value=0.00037  Score=43.12  Aligned_cols=39  Identities=28%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh-hhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG-IRIF   95 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~-~~~~   95 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+++++++ ++.+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~   43 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIE   43 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCcHHHHH
Confidence            6889999998 89999999999999998 88888763 4443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.00063  Score=41.28  Aligned_cols=51  Identities=12%  Similarity=0.127  Sum_probs=39.3

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++...+++|++||.+|+|. |..++.+++..|.+ |+.++.+++-.+.+++
T Consensus        69 ~ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~~-V~~ie~~~~l~~~a~~  119 (215)
T d1jg1a_          69 IMLEIANLKPGMNILEVGTGS-GWNAALISEIVKTD-VYTIERIPELVEFAKR  119 (215)
T ss_dssp             HHHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCSC-EEEEESCHHHHHHHHH
T ss_pred             HHHHhhccCccceEEEecCCC-ChhHHHHHHhhCce-eEEEeccHHHHHHHHH
Confidence            456778999999999999864 55566677777866 9999999877766543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00052  Score=37.49  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .++++|+|+|.+|+=+++.++.+|.+ |.++++.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~-Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAK-THLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccE-EEEEeecch
Confidence            47899999999999999999999998 888877653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.09  E-value=0.00046  Score=43.77  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|++|||.|+ |-+|..+++.+...|.+ |+++++++.+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCc
Confidence            5799999998 99999999999999998 9999876543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.09  E-value=0.00043  Score=43.04  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|++++|.|+ +++|..+++.+...|++ |++++++.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~   52 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANS   52 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCc
Confidence            4899999998 89999999999999999 88887653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.09  E-value=0.00042  Score=40.29  Aligned_cols=47  Identities=17%  Similarity=0.087  Sum_probs=37.2

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ....+.+|.+||.+|+|. |..+..+++ .|.+ |+++|.+++-++.+++
T Consensus        14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~~-V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGK-SQDMSWLSG-QGYH-VVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHH-HCCE-EEEEEECHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEecCcC-CHHHHHHHH-cCCc-eEeecccHHHHHHHHH
Confidence            445789999999999864 355666665 4998 9999999998887764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.08  E-value=0.00064  Score=41.93  Aligned_cols=38  Identities=21%  Similarity=0.187  Sum_probs=32.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+||.|+ +++|+.+++.+...|++ |+.+++++++.+.+
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~   41 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAV   41 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            3588898 89999999888889998 99999999887654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.05  E-value=0.00053  Score=41.07  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|++|.|+|.|.+|..++++++.+|.+ |++.++...
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhccc-ccccCcccc
Confidence            389999999999999999999999999 988876543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00076  Score=37.19  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++++|+|+|.+|+=+++.+..+|.+ |.++++++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc-eeEEEecc
Confidence            47999999999999999999999999 88887655

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.03  E-value=0.00035  Score=42.46  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|+|+|+|+.|+.++..+...|.+ |++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~-V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTD-AVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            589999999999999999999998 99998653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.01  E-value=0.00095  Score=36.59  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..++++|+|+|.+|+=+++..+.+|.+ |.++.+++
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAE-VTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCc-eEEEEeec
Confidence            348899999999999999999999999 88777654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.01  E-value=0.00053  Score=41.45  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=27.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      |+|+|+|+.|++++..+...|.+ |++++.++
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~-V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGAN-VLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            89999999999988888888999 99998754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.00  E-value=0.0011  Score=38.05  Aligned_cols=42  Identities=14%  Similarity=-0.024  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +++..+|.|+|+|.+|..+..++...+..+++..|.++++.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            466789999999999998888888878766999988877654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.00  E-value=0.0018  Score=37.58  Aligned_cols=49  Identities=18%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             HHHHH-HhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         45 GVHAC-KRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        45 a~~~~-~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .+.++ +..+ +-.|++++|.|-|-+|.-+++-+|.+|++ |++++.+|-+.
T Consensus         9 ~~d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~-V~V~E~DPi~a   59 (163)
T d1v8ba1           9 LPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGAR-VYITEIDPICA   59 (163)
T ss_dssp             HHHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSCHHHH
T ss_pred             HHHHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCE-EEEEecCchhh
Confidence            34455 4334 57899999999999999999999999999 99999998654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.00055  Score=41.83  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ..|+|+|+|+.|++++..+...|.+ |.+++.+++
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            3489999999999998888888998 999987653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.00  E-value=0.00054  Score=40.72  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=28.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+||.|+.++..+...|.+ |++++..+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~k-V~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFK-TTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCC-EEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEEecC
Confidence            389999999999999999999999 88887643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.99  E-value=0.00073  Score=41.70  Aligned_cols=42  Identities=19%  Similarity=0.035  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhhhhh
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIRIFP   96 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~~~~   96 (100)
                      +-.|+++||.|+ +++|..+++.+...|++ |+++. +++++.+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~   46 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEE   46 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHH
Confidence            346899999998 89999999999999999 76654 45444443

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.99  E-value=0.00094  Score=41.02  Aligned_cols=37  Identities=16%  Similarity=0.139  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |+++++++++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~   41 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAP   41 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchH
Confidence            4789999998 89999999999999998 8888887653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00047  Score=42.89  Aligned_cols=41  Identities=20%  Similarity=0.197  Sum_probs=31.8

Q ss_pred             CCCEE-EEEcC-CHHHHHHHH-HHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSV-LVLSA-GPIGLVTIL-AAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~v-li~G~-G~~G~~~~~-l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|++| ||.|+ +++|+.+++ +++.-|++ |+.+++++++.+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~-Vi~~~r~~~~~~~~   44 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQAA   44 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            37788 56688 899998765 55556887 99999999987654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.99  E-value=0.00096  Score=37.97  Aligned_cols=40  Identities=13%  Similarity=0.067  Sum_probs=31.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.++|+|.+|.+.++-....|..+|++.++++++.+.++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~   41 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLE   41 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhh
Confidence            5889999999998877444445445999999999887654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.99  E-value=0.00055  Score=40.99  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|++|.|+|.|.+|..++++++.+|.+ |++.++.+.
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             cceeeeeeeccccccccccccccccee-eeccCCccc
Confidence            478999999999999999999999999 999987554

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.00094  Score=36.81  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .++++|+|+|.+|+=+++.++.+|.+ |.++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~-Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLD-VTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCe-EEEEEec
Confidence            46899999999999999999999999 7777654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00065  Score=38.62  Aligned_cols=33  Identities=15%  Similarity=0.397  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|++|||+|+|.+|.--+..+...|++ |+++.+
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~-VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCK-LTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCE-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            589999999999999999999999998 777754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.97  E-value=0.00065  Score=42.17  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |++++++++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~~~   42 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKE   42 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcH
Confidence            5899999998 89999999999999998 888887754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.97  E-value=0.00069  Score=40.02  Aligned_cols=36  Identities=28%  Similarity=0.210  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|++|.|+|.|.+|..++++++.+|.+ |++.++++.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~-v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQ-VRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeeccccc-ccccccccc
Confidence            488999999999999999999999998 999987654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.93  E-value=0.00095  Score=36.29  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .++++|+|+|++|+=+++.++.+|.+ |.++++.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~-Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ-VSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc-eEEEeeecc
Confidence            48999999999999999999999998 888877543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00089  Score=42.20  Aligned_cols=48  Identities=15%  Similarity=0.196  Sum_probs=39.7

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++.++++|++||=+|+|- |..++.+++..|++ |++++.+++..+.+++
T Consensus        56 ~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~~-v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          56 GKLGLQPGMTLLDVGCGW-GATMMRAVEKYDVN-VVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             TTTTCCTTCEEEEETCTT-SHHHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEecCcc-hHHHHHHHhcCCcc-eEEEeccHHHHHHHHH
Confidence            778999999999999863 34566788888998 9999999988877654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.91  E-value=0.00053  Score=41.70  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=32.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +.+|||.|+ +++|..+++.+...|++ |+.+++++++.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~~~   39 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQ   39 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCchhc
Confidence            457999998 89999999999999999 99998876643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00075  Score=39.74  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+|..|+.++..+...|.+ |.+++.++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~-V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKK-VLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCC-EEEEcCCC
Confidence            389999999999998888889998 99998865

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00078  Score=38.90  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=26.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      -|+|+|+|+.|+.+...+...|.+ |.++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            489999999999999999999999 777875

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.87  E-value=0.00093  Score=39.84  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .|+++.|+|.|.+|..+++.++.+|.+ |+..++...
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   83 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYLS   83 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSC
T ss_pred             eCceEEEeccccccccceeeeeccccc-eeeccCccc
Confidence            578999999999999999999999999 888876543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0011  Score=36.53  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++++|+|+|.+|+=+++.++.+|.+ |.++.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSK-TSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcE-EEEEeecc
Confidence            37999999999999999999999999 88887764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.83  E-value=0.0013  Score=36.47  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +..++++|+|+|.+|+=+++..+.+|.+ |.++++.+.
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~~~~   60 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEMMDG   60 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCE-EEEEEeecc
Confidence            3458999999999999999999999999 888876553

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.82  E-value=0.0007  Score=42.57  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             EEEEEcCCHHHHHHHHHHH-----HcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAK-----AYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~-----~~g~~~v~~~~~~~~   92 (100)
                      -|+|+|+|++|++++.++.     ..|.+ |+++++++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCCC
Confidence            4899999999999877763     46999 999987654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.81  E-value=0.0011  Score=39.82  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=28.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+||.|+.+...+...|.+ |.+++..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~-V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLK-VAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            388999999999999999999999 88887654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0011  Score=39.47  Aligned_cols=32  Identities=25%  Similarity=0.502  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+||.|+.+...+...|.+ |++++..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~k-V~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFN-TACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEEecC
Confidence            489999999999999999999999 88887653

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.80  E-value=0.0035  Score=38.52  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .--.|++|+|.|.|.+|..+++++...|++ |++++
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gak-vv~vs   61 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAK-VIAVS   61 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEee
Confidence            334799999999999999999999999999 77665

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.79  E-value=0.0009  Score=36.89  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      ..++++|+|+|.+|+=+++..+.+|.+ |.++.+++.-
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~-Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSE-VTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCE-EEEECSSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCe-EEEEEEcccc
Confidence            357999999999999999999999998 8888776654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.0011  Score=39.54  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=34.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|.|-+|+.++......|.+ |+++|.++++.+.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~-V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc-EEEEeCCHHHHHHhc
Confidence            588999999999988888888998 999999999887664

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.0027  Score=39.57  Aligned_cols=51  Identities=14%  Similarity=0.089  Sum_probs=42.2

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~   99 (100)
                      .+...++++|++||=.|+|. |.+++.+++..|.+ +|+.+|.+++..+.+++
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            45788999999999999876 66677888887642 59999999999988765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.78  E-value=0.0014  Score=40.60  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=38.3

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      +...++++|++||=.|+|. |.++..+++..|. .+|+.++.+++..+.+++
T Consensus        78 i~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            3567899999999999865 5666778887654 359999999998888764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.77  E-value=0.0011  Score=41.79  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .-.|+|+|+|+.|++++..++..|.+ +++.+.+++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~-v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRS-VHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCC-EEEEEcCCC
Confidence            34699999999999999999999998 888887643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.77  E-value=0.0013  Score=38.97  Aligned_cols=31  Identities=29%  Similarity=0.499  Sum_probs=27.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      -++|+|+||.|+.++..+...|.+ |.+++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~k-V~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQK-VTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCE-EEEEecC
Confidence            388999999999999999999999 8888754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.76  E-value=0.0016  Score=38.42  Aligned_cols=40  Identities=20%  Similarity=0.048  Sum_probs=31.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEecChhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGAR-VICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~   97 (100)
                      .+|||.|+ |.+|..++..+...|.+ .|+...+++++.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~   45 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI   45 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc
Confidence            68999998 99999999999988865 256667777766543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0011  Score=39.33  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=27.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      -|+|+|+|+.|+.++..+..+|.+ |.+++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~k-V~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQK-CALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence            389999999999999999999999 8888764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0013  Score=37.38  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +|+|+|+|.+|.+....+...|.+ |..+++++++.+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~-V~~~~r~~~~~~   37 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHE-VQGWLRVPQPYC   37 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCc-eEEEEcCHHHhh
Confidence            699999999999988888888998 999988876554

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.71  E-value=0.00064  Score=41.65  Aligned_cols=40  Identities=13%  Similarity=0.031  Sum_probs=31.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH---HcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAK---AYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~---~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|||.|+ +++|+.+++.+.   ..|++ |+++++++++.+.++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~-V~~~~r~~~~~~~~~   46 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQH-LFTTCRNREQAKELE   46 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSE-EEEEESCTTSCHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHH
Confidence            57999998 899999876554   35777 999999998876554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.69  E-value=0.0014  Score=37.70  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGAR   82 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~   82 (100)
                      ++++|+|+|+|++|+-++..++.+|.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~   28 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWE   28 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCc
Confidence            578999999999999999999999987

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.68  E-value=0.0012  Score=39.30  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=28.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .++|+|+|+.|+.++..+..+|.+ |.+++.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~-V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIP-TVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            489999999999999999999999 8888754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.0008  Score=42.64  Aligned_cols=36  Identities=36%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+.++|.|+ +++|..+++.+...|++ |++.+++.+
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~~~   42 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGD   42 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCch
Confidence            5899999998 89999999999999998 888876543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0014  Score=40.77  Aligned_cols=31  Identities=19%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      |+|+|+|..|+.++..++..|.+ |++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~-V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLN-VVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            78999999999999999999998 99998644

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.66  E-value=0.0019  Score=39.60  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         54 VGLGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        54 ~~~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +=+|+++||.|+ |  ++|..+++-+...|++ |+.+++++++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~~~   45 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRL   45 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChHHH
Confidence            446899999995 4  5999999999999999 88888877765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.65  E-value=0.0015  Score=38.67  Aligned_cols=30  Identities=27%  Similarity=0.493  Sum_probs=27.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      |+|+|+||.|+.++..+...|.+ |.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~-V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLK-TALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            88999999999999999999999 8888754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0031  Score=38.20  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=38.3

Q ss_pred             HHHHhc--CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhh
Q psy16556         47 HACKRS--GVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        47 ~~~~~~--~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~   98 (100)
                      ..++..  .+++|++||-+|+|. |..++.+++..|. .+|+.++.+++-.+.++
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            455543  789999999999864 5666777777763 35999999988777664

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.64  E-value=0.0021  Score=40.28  Aligned_cols=49  Identities=8%  Similarity=0.019  Sum_probs=39.4

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++..++++|++||=+|+|.=| .+..+++..|++ |+.++.+++..+.+++
T Consensus        45 ~~~l~l~~g~~VLDiGCG~G~-~a~~~a~~~g~~-v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIGCGWGT-TMRRAVERFDVN-VIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HTTSCCCTTCEEEEESCTTSH-HHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCCchH-HHHHHHHhCcee-EEEecchHHHHHHHHH
Confidence            377889999999999986324 356678888997 9999999998877654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.64  E-value=0.0014  Score=38.41  Aligned_cols=33  Identities=12%  Similarity=0.135  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ..+|+|+|+|+.|+.++..+...|.+ +++++..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEee
Confidence            36799999999999999888899999 7777643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.64  E-value=0.0011  Score=40.61  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      -++|||+|+ |.+|..++..+...|.+ |+++++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~-V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEECCCcc
Confidence            368999998 99999999999999998 8888876544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0033  Score=38.09  Aligned_cols=48  Identities=19%  Similarity=0.129  Sum_probs=38.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..++++|++||=+|+|. |..+..+++..|++ |+.+|.+++-.+.+++
T Consensus        27 ~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~~-v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          27 RVLRMKPGTRILDLGSGS-GEMLCTWARDHGIT-GTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHTCCCTTCEEEEETCTT-CHHHHHHHHHTCCE-EEEEESCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCCE-EEEEecccchhhHHHH
Confidence            778999999999999863 23456677788887 9999999987776653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.62  E-value=0.0014  Score=41.54  Aligned_cols=34  Identities=32%  Similarity=0.417  Sum_probs=26.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~   91 (100)
                      ++|+|+|+|+.|++++..++..|. ..|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999988766655553 2388888764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0012  Score=41.50  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=28.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++|+|+|..|+.++..+...|.+ |.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~-V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKK-VLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCC-EEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCc-EEEEECCC
Confidence            489999999999999998888988 99988654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.60  E-value=0.0037  Score=35.70  Aligned_cols=40  Identities=13%  Similarity=0.058  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      |..+|.|+|+|.+|..+..++...+...++..|.++++.+
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~   41 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence            4578999999999998888888888877999998776643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.60  E-value=0.0023  Score=40.56  Aligned_cols=38  Identities=21%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      ..++|+|+|+ |.+|..++..+...|.+ |+++.+++++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEEECCcchh
Confidence            4578999998 99999999999999999 88888876543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.59  E-value=0.002  Score=35.29  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+++++|+|+|.+|+=+++.+...|.+ |..+++++.
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~-Vtlv~~~~~   66 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGYH-VKLIHRGAM   66 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTCE-EEEECSSSC
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccce-EEEEecccc
Confidence            457899999999999999999999998 888877654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.0012  Score=40.60  Aligned_cols=41  Identities=12%  Similarity=-0.010  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHH-HHHH--cCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTIL-AAKA--YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~-l~~~--~g~~~v~~~~~~~~~~~~~   97 (100)
                      .|+.++|.|+ +++|..+++ +++.  .|++ |+.+++++++++.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~-Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCE-EEEEECCHHHHHHH
Confidence            4677788898 899998765 5553  5888 99999999887654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.58  E-value=0.003  Score=38.43  Aligned_cols=50  Identities=20%  Similarity=0.161  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++...+++|++||-+|+| .|..++.+++. +.+ |+.++.+++-.+.+++
T Consensus        61 ~ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~~-V~aiE~~~~~~~~A~~  110 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VDK-VVSVEINEKMYNYASK  110 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SSE-EEEEESCHHHHHHHHH
T ss_pred             HHHHHhhhcccceEEEecCC-CCHHHHHHHHH-hcc-cccccccHHHHHHHHH
Confidence            35577899999999999987 35556666665 445 9999999988877654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.58  E-value=0.0013  Score=38.91  Aligned_cols=39  Identities=13%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      .+|.|+|+|..|.++...+...|.+ |...+++++..+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~-V~l~~r~~~~~~~i   46 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCRE-VCVWHMNEEEVRLV   46 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEE-EEEECSCHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCe-EEEEEecHHHHHHH
Confidence            4699999999999998888888877 99999988877654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0021  Score=39.23  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +.+|+|+|+|++|..++..+...|.+++..+|.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4789999999999999999999999989988754

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.0019  Score=40.24  Aligned_cols=33  Identities=21%  Similarity=0.034  Sum_probs=28.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++|||.|+ |.+|..++..+...|.+ |+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCC
Confidence            58999998 99999999988888998 99888654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.54  E-value=0.0022  Score=38.93  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +-|+|.|+ +++|.++++.+...|++ |+.+++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~-V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECChHH
Confidence            34788898 89999999999999999 9888876543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.53  E-value=0.0019  Score=38.65  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHH--cCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKA--YGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~--~g~~~v~~~~~~~   91 (100)
                      .+|+|+|+|+.|+.++..++.  .|.+ |++.+..+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~-V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAH-VDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCE-EEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCe-EEEEeCCC
Confidence            479999999999999886654  4666 88887765

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.52  E-value=0.0021  Score=39.94  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSA-G--PIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~-G--~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      +|+++||.|+ |  ++|..+++.+...|++ |+.++++++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCchh
Confidence            6899999997 5  8999999999999999 888876543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0024  Score=37.83  Aligned_cols=30  Identities=33%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++|+|+||.|+.+...+...|.+ |.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~k-V~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGAR-AAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence            78999999999999999999999 8888753

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0044  Score=39.66  Aligned_cols=51  Identities=20%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGAR-VICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~   99 (100)
                      .+...++++|++||=.|+|. |.+++.+++..|.+ +|+.++.+++..+.+++
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            34678999999999999876 77888899988753 69999999998888764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.50  E-value=0.0056  Score=34.93  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..+++|+|+|+|.+|.=++..+...|++.|+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3477899999999999999999999999777775543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.48  E-value=0.0026  Score=37.42  Aligned_cols=38  Identities=11%  Similarity=0.181  Sum_probs=31.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|.|+|.|-+|+.++.++ +.|.+ |+.+|.++++.+.++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~~-V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQNE-VTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTSE-EEEECSCHHHHHHHH
T ss_pred             EEEEECCChhHHHHHHHH-HCCCc-EEEEECCHHHHHHHh
Confidence            588999999999876655 46887 999999999887765

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.47  E-value=0.0029  Score=37.23  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      .|+++.|+|.|.+|..++++++.+|.+ |++.++..++
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~-v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAY-VVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSCH
T ss_pred             cceeeeeccccchhHHHHHHhhhccce-EEeecCCCCh
Confidence            478999999999999999999999998 9999875543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.47  E-value=0.0023  Score=38.99  Aligned_cols=32  Identities=13%  Similarity=0.102  Sum_probs=27.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|+|+|+|.+|+.++-.+...|.+ |+++++++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~-V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKN-TALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            499999999999988777788988 99998753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.46  E-value=0.0041  Score=35.30  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRI   94 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~   94 (100)
                      ....+|.|+|+|.+|..++..+...| +++++.+|.++++.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            34678999999999999888877776 45699999888764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.42  E-value=0.0053  Score=34.83  Aligned_cols=40  Identities=23%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRI   94 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~   94 (100)
                      ..+.+|.|+|+|.+|..++..+...+. ++++.+|.++++.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~   44 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA   44 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence            356789999999999998888877664 5699999888773

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.41  E-value=0.0029  Score=36.17  Aligned_cols=40  Identities=15%  Similarity=-0.004  Sum_probs=34.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +|-++|.|.+|...+.-+...|.+ |++.++++++.+.+++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~   41 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIA   41 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHH
Confidence            588999999999988888888998 9999999998876643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.39  E-value=0.0021  Score=38.47  Aligned_cols=31  Identities=19%  Similarity=0.485  Sum_probs=27.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      -|+|+|+||.|+.++..+...|.+ |.+++..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~k-V~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKK-VMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCC-EEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            489999999999999999999999 8888743

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.36  E-value=0.0038  Score=39.49  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .|++|+|.|.|.+|..+++.+...|++ |++++
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Gak-vv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGAK-CVAVG   66 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEE
Confidence            589999999999999999999999999 77764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.35  E-value=0.0024  Score=39.25  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=29.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      -++|||+|+ |.+|..++..+...|.+ |+++++++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCc
Confidence            356999998 99999999988889988 888877543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.35  E-value=0.0015  Score=38.92  Aligned_cols=33  Identities=6%  Similarity=0.140  Sum_probs=26.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-------CcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYG-------ARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g-------~~~v~~~~~~~   91 (100)
                      .+|+|+|+||.|+.++..+...|       .+ |.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~-V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMA-VDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE-EEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCc-eEEEecCC
Confidence            48999999999999988877766       34 88887654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.32  E-value=0.0029  Score=39.19  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=26.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .|+|+|+|.+|++++..+...|.+.|.++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            599999999999887776678865488887653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.31  E-value=0.0017  Score=39.83  Aligned_cols=40  Identities=10%  Similarity=-0.004  Sum_probs=33.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .++||.|+ +++|+.++..+...|++ |++.+++.++.+.++
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~-V~i~~r~~~~~~~~~   41 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKDELE   41 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH
Confidence            36899998 79999999998999998 999998888776554

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.31  E-value=0.0031  Score=39.18  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+|..|+.++.-+...|.+ |++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAK-VILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            499999999999998888889999 88887643

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.30  E-value=0.004  Score=36.90  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      |+++.|+|.|.+|...+++++.+|.+ |+..++...
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCC
T ss_pred             ccceEEeecccchHHHHHHHHhhccc-ccccccccc
Confidence            79999999999999999999999999 888876443

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.0043  Score=39.39  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +..+.+|||+|+ |-+|..++..+...|.+ |+++++.
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~-V~~~d~~   48 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHY-VIASDWK   48 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCC
Confidence            346789999998 99999999999999988 8888754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.29  E-value=0.0083  Score=37.13  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=29.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      -.|++|+|.|.|.+|..+++.+...|++ |+++.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Gak-vvavs   66 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGAK-AVTLS   66 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTCE-EEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEe
Confidence            4689999999999999999999999999 66653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.27  E-value=0.0031  Score=37.61  Aligned_cols=47  Identities=13%  Similarity=0.015  Sum_probs=36.1

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++..+++++++||=+|+| .|..+..+++. |.+ |+++|.+++-.+.++
T Consensus         8 l~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~~-v~gvD~s~~~i~~A~   54 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVATG-GGHVANAFAPF-VKK-VVAFDLTEDILKVAR   54 (231)
T ss_dssp             HHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SSE-EEEEESCHHHHHHHH
T ss_pred             HHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CCE-EEEEECCHHHHhhhh
Confidence            477899999999999987 45555566544 666 999999988766654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0039  Score=37.46  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEecChhh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGA-RVICVCKYVGIR   93 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~-~~v~~~~~~~~~   93 (100)
                      +++|||.|+ |.+|..+++.+...|. .+|+++.+++.+
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            478999999 9999999988887775 359998876544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.0057  Score=38.47  Aligned_cols=49  Identities=12%  Similarity=0.043  Sum_probs=39.0

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++.++++|++||=+|+|-=| .++.+++..|++ |+.++.+++..+.+++
T Consensus        54 ~~~l~l~~G~~VLDiGCG~G~-~~~~~a~~~g~~-v~git~s~~q~~~a~~  102 (291)
T d1kpia_          54 LDKLNLEPGMTLLDIGCGWGS-TMRHAVAEYDVN-VIGLTLSENQYAHDKA  102 (291)
T ss_dssp             HHTTCCCTTCEEEEETCTTSH-HHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEecCcchH-HHHHHHHhcCcc-eeeccchHHHHHHHHH
Confidence            378899999999999986322 466788888998 9999999988776543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.23  E-value=0.0047  Score=37.06  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=35.0

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +..++++|++||=+|+|. |..+..+++ .+.+ |+++|.+++-.+.++
T Consensus        10 ~~~~~~~~~rILDiGcGt-G~~~~~la~-~~~~-v~gvD~S~~~l~~A~   55 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGA-GHTALAFSP-YVQE-CIGVDATKEMVEVAS   55 (234)
T ss_dssp             HHHTCCTTCEEEEESCTT-SHHHHHHGG-GSSE-EEEEESCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEeCCcC-cHHHHHHHH-hCCe-EEEEeCChhhhhhhh
Confidence            778999999999999863 344455555 4566 999999988776654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.21  E-value=0.0038  Score=40.13  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=27.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      |++|||.|+ |-+|..++..+...|.+ |+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~-V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYE-VCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence            689999998 99999999999999988 99886

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.20  E-value=0.0089  Score=37.14  Aligned_cols=51  Identities=18%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      .+...+++||++||=.|+|. |.+++.+++..|. .+|+.+|.+++..+.+++
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~  139 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARR  139 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHH
Confidence            44778999999999998864 5667788888775 369999999999888764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0048  Score=36.34  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .++++.|+|.|.+|..++++++.+|.+ |+..++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   78 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIENK   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             cceEEEEeecccchhhhhhhcccccce-Eeecccccc
Confidence            478999999999999999999999999 888876543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.18  E-value=0.0043  Score=35.23  Aligned_cols=38  Identities=11%  Similarity=0.038  Sum_probs=31.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      ++.++|+|.+|.+.+.-....|.+ +++.++++++.+.+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~-i~v~~r~~~~~~~l   39 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHE-LIISGSSLERSKEI   39 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCE-EEEECSSHHHHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCe-EEEEcChHHhHHhh
Confidence            578999999999887766666777 99999998887765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.17  E-value=0.0053  Score=35.54  Aligned_cols=40  Identities=13%  Similarity=0.239  Sum_probs=34.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ..|-++|.|.+|..++.-+...|.+ |++.+++++|.+.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~   42 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFL   42 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHH
Confidence            4588999999999988888888998 999999999887653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.17  E-value=0.0063  Score=37.59  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=38.1

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...+++++++||=+|+|. |..+..+++..|++ |++++.++...+.+++
T Consensus        61 ~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          61 MTGVLQRQAKGLDLGAGY-GGAARFLVRKFGVS-IDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCE-EEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHhhhhccCCcE-EEEEeccchhhhhhhc
Confidence            557899999999999863 44566777877887 9999999887776653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0023  Score=38.51  Aligned_cols=46  Identities=13%  Similarity=0.034  Sum_probs=35.5

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ....+.++.+||..|+|. |..+..+++ .|++ |+++|.+++-.+.++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~~-V~gvD~S~~ai~~a~   84 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGHS-VVGVEISELGIQEFF   84 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTCE-EEEECSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCCc-EEEEeCCHHHHHHHH
Confidence            345678899999999975 566666665 6998 999999998776654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.15  E-value=0.0067  Score=36.29  Aligned_cols=49  Identities=18%  Similarity=0.142  Sum_probs=37.5

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ....++||++||=+|+|+ |..+..+++..+..+|+++|.+++..+.+++
T Consensus        50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~   98 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   98 (209)
T ss_dssp             CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHH
Confidence            346799999999999864 3355666777665569999999998887653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.11  E-value=0.0063  Score=35.15  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=34.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +|-|+|.|.+|...+.-+...|.+ |++.++++++.+.+.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~   41 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFM   41 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHH
Confidence            478999999999988888888999 999999999887653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0061  Score=38.11  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=27.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      ++|||.|+ |-+|..++..+...|.+ |+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHE-VTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            68999998 99999999988889998 888864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0076  Score=33.96  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=30.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +.++|.|.|.+|..+++.+...|.+ +++++.++++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~~~   38 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQN-VTVISNLPED   38 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccchh
Confidence            4699999999999999999999998 8888887764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.11  E-value=0.0046  Score=37.76  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=26.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      |+|+|+|.+|+.++.-+...|.+ |++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~-V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVK-TLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            89999999999988888888998 9998764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.09  E-value=0.0056  Score=36.01  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+.++.|+|.|.+|..+++.++.+|.+ |+..++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~   77 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHR   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSC
T ss_pred             cccceeeccccccchhhhhhhhccCce-EEEEeecc
Confidence            578999999999999999999999999 88888643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.09  E-value=0.0044  Score=38.17  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             CEEEEEcCCHHHHHHHH-HHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTIL-AAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~-l~~~~g~~~v~~~~~~~   91 (100)
                      .-|+|+|+|+.|+.++. +++..|.+ |.+++.++
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCe-EEEEecCC
Confidence            44999999999998765 56667999 99998765

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0055  Score=38.55  Aligned_cols=47  Identities=21%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             HHH-HH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhh
Q psy16556         45 GVH-AC-KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIR   93 (100)
Q Consensus        45 a~~-~~-~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~   93 (100)
                      +|. ++ +.....+|++||-+|+| .|.+.+.+++ .|+++|++++.++.-
T Consensus        22 ~y~~ai~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          22 SYRDFIYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             HHHHHHHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             HHHHHHHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            444 44 33466789999999987 4445554444 588779999988753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.05  E-value=0.0042  Score=38.93  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      |+|+|+|+.|+.++--+...|++ |++++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLS-TIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCC-EEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            89999999999998888889999 88887543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.02  E-value=0.005  Score=39.94  Aligned_cols=32  Identities=25%  Similarity=0.547  Sum_probs=25.0

Q ss_pred             EEEEEcCCHHHHHHHH-HHH-----HcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTIL-AAK-----AYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~-l~~-----~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+||.|++++. +++     ..|.+ |.++++.+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCCC
Confidence            4999999999988654 444     27899 99998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.02  E-value=0.0045  Score=38.82  Aligned_cols=33  Identities=39%  Similarity=0.495  Sum_probs=28.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      --|+|+|+|..|+.+..-+...|.+ |++++..+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~-V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGAN-VILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCC-EEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            4499999999999998888888999 88887543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.01  E-value=0.0071  Score=34.03  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLS-AGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G-~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++|.|+| .|.+|...+..++..|.+ |.+.++++++..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~~~~~   47 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYP-ISILDREDWAVA   47 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTCGGGH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCC-cEeccccccccc
Confidence            6899999 599999999999999999 999988765543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.01  E-value=0.0098  Score=33.67  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRI   94 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~   94 (100)
                      ++|.|+|+|.+|..++..+...| +.+++..|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            68999999999988887777766 45699999888764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.01  E-value=0.0047  Score=38.72  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+|+.|+.++.-+...|.+ |++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~-V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAK-VILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            499999999999998888889999 99887653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.99  E-value=0.0064  Score=37.05  Aligned_cols=30  Identities=17%  Similarity=0.323  Sum_probs=27.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++|+|+|+.|+.+...+...|.+ |.+++..
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~-V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAK-VALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            78999999999999999999999 8888754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.98  E-value=0.0072  Score=34.51  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=33.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++|-++|.|.+|...+.-+...|.+ |.+.++++++.+.+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~-v~~~d~~~~~~~~~~   41 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQSAVDGLV   41 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCe-EEEEECchhhhhhhh
Confidence            4688999999999887777778998 999999998877654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0053  Score=38.59  Aligned_cols=33  Identities=15%  Similarity=0.003  Sum_probs=28.6

Q ss_pred             CEE-EEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSV-LVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~v-li~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++| ||.|+ |-+|..++..+...|.+ |+++++.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEECCC
Confidence            467 99998 99999999999889998 99998754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.93  E-value=0.0044  Score=37.72  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=30.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      ..||.|+ +++|..++..+...|++ |+.++++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~-Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHH
Confidence            5688898 89999999999999998 99998876553

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.92  E-value=0.014  Score=33.56  Aligned_cols=40  Identities=8%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRI   94 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~   94 (100)
                      .+..+|.|+|+|.+|..++..+...|. ++++.+|.++++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            456799999999999999888888875 6699999887664

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.91  E-value=0.007  Score=37.82  Aligned_cols=32  Identities=13%  Similarity=-0.062  Sum_probs=28.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +++||.|+ |-+|..++..+...|.+ |+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~-V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYE-VHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCE-EEEEECC
Confidence            57999998 99999999999999998 9999874

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.015  Score=36.92  Aligned_cols=51  Identities=14%  Similarity=0.023  Sum_probs=41.8

Q ss_pred             HHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         47 HACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        47 ~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +.++..+++++++++=+|+|. |..+.++++..++.++++++.+++..+.++
T Consensus       142 ~~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         142 QMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            345788999999999888864 566778889999877999999998877664

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.90  E-value=0.011  Score=33.25  Aligned_cols=38  Identities=18%  Similarity=0.040  Sum_probs=30.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      .+|.|+|+|.+|..++.++...+...++.+|.++++.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~   39 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence            57899999999998877776667655999988777643

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.88  E-value=0.0072  Score=35.59  Aligned_cols=44  Identities=20%  Similarity=0.169  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      -++++.+||=+|+|. |..+..+++ .|.+ |+++|.+++-.+.+++
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~-~~~~-v~giD~S~~~i~~ak~   77 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLED-YGFE-VVGVDISEDMIRKARE   77 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHH-TTCE-EEEEESCHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhh-hhcc-cccccccccchhhhhh
Confidence            457889999999865 556666665 4777 9999999988877654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.015  Score=38.25  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         45 GVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        45 a~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+.++..++++|++++=+|+| +|..+.++|+..|+.++++++.++.-.+.+++
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            4456688999999998888875 47788899999998779999999988777653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0073  Score=38.46  Aligned_cols=34  Identities=15%  Similarity=0.016  Sum_probs=28.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+.|||.|+ |-+|..++..+...|.+ |+++++..
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~-V~~~~r~~   35 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRA   35 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC--
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCE-EEEEECCC
Confidence            367889998 99999999999999998 99998743

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.026  Score=34.33  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=27.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCcEEEEEe
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAA-KAYGARVICVCK   88 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~-~~~g~~~v~~~~   88 (100)
                      -.|.+|+|.|.|.+|..+++.+ +..|++ |++++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~-vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGSK-VVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCCE-EEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCCc-eEEee
Confidence            4689999999999999999887 567998 76664

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.82  E-value=0.004  Score=37.85  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      +|||+|+ |-+|..++..++..|.+ |+++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVE-VIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCE-EEEeechh
Confidence            6999998 99999999999999998 99987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.80  E-value=0.016  Score=31.27  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCc--EEEEEecChh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGAR--VICVCKYVGI   92 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~--~v~~~~~~~~   92 (100)
                      ..++++|+|+|++|.=++...+.++.+  .|..+++.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            458999999999999888777776542  4878876543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.011  Score=36.45  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..++|++||=+|+|. |.+++.++ ..|++ |+++|.+++-.+.+++
T Consensus       117 ~~~~g~~VLDiGcGs-G~l~i~aa-~~g~~-V~gvDis~~av~~A~~  160 (254)
T d2nxca1         117 HLRPGDKVLDLGTGS-GVLAIAAE-KLGGK-ALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             HCCTTCEEEEETCTT-SHHHHHHH-HTTCE-EEEEESCGGGHHHHHH
T ss_pred             hcCccCEEEEcccch-hHHHHHHH-hcCCE-EEEEECChHHHHHHHH
Confidence            367999999999874 55555554 46887 9999999998887764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.72  E-value=0.016  Score=32.48  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~   95 (100)
                      +|.|+|+|.+|..++..+...+ .++++..|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            5889999999999888887776 456999998887754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.016  Score=36.27  Aligned_cols=36  Identities=19%  Similarity=0.014  Sum_probs=28.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      +|||.|+ |-+|..+++.+...|...|++++....+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~   38 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI   38 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch
Confidence            6999998 99999999888888853488887655443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.013  Score=35.77  Aligned_cols=33  Identities=24%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      -|+|+|+|+.|+-++..+..+|.+ +..++.+.+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~k-tllit~~~~   36 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVR-VGLLTQSLD   36 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEEESCGG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCc-EEEEEeccc
Confidence            389999999999999999999999 666655544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.70  E-value=0.014  Score=31.36  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc---CCcEEEEEecChh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAY---GARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~---g~~~v~~~~~~~~   92 (100)
                      .++++|+|+|.+|.=++++...+   |.+ |..+++.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~-Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQ-VDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCE-EEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccc-cceeccccc
Confidence            58999999999999887776554   666 888876543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.69  E-value=0.0065  Score=36.91  Aligned_cols=50  Identities=18%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      ++...+++|++||=+|+|+ |..+..+++..|. .+|+++|.+++..+.+++
T Consensus        66 l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~  116 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            3566899999999999864 5567788888874 369999999988877653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.68  E-value=0.019  Score=32.29  Aligned_cols=38  Identities=29%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~   95 (100)
                      .+|.|+|+|.+|..++..+...+. ++++.+|.++++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            468999999999998877777764 56999998887643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.68  E-value=0.0093  Score=36.19  Aligned_cols=50  Identities=14%  Similarity=0.113  Sum_probs=36.8

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ++..++++|++||=+|+|. |..+..+++......|+++|.+++-.+.+++
T Consensus        67 l~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~  116 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            4567899999999999853 4455566665444469999999987776653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.63  E-value=0.011  Score=36.03  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -++|+|+|+.|+.+...+..+|.+ |.+++..+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~k-v~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGR-QLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            389999999999999999999999 77777643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.62  E-value=0.018  Score=32.38  Aligned_cols=39  Identities=13%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             cCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         52 SGVGLGTSVLVL--SAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        52 ~~~~~g~~vli~--G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+..+++.++|+  |+|.+|+-+++.+...|.+ |..+++.+
T Consensus        34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~-Vtlv~~~~   74 (156)
T d1djqa2          34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHE-VTIVSGVH   74 (156)
T ss_dssp             TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CccccCCceEEEecCCChHHHHHHHHHHHcCCe-EEEEecCC
Confidence            566778889988  6689999999999999999 88887664

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.60  E-value=0.014  Score=35.36  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=30.7

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCc------EEEEEecChhhhhhh
Q psy16556         60 VLVLSA-GPIGLVTILAAKAYGAR------VICVCKYVGIRIFPY   97 (100)
Q Consensus        60 vli~G~-G~~G~~~~~l~~~~g~~------~v~~~~~~~~~~~~~   97 (100)
                      +||.|+ +++|..++..+...|++      .|+..++++++.+.+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~   48 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKI   48 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHH
Confidence            678898 89999998888888876      477888888877654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.58  E-value=0.037  Score=33.29  Aligned_cols=58  Identities=17%  Similarity=0.060  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHhc--CCCCCCEEEEEcC--CHHHHHHHHHHHHcCC---cEEEEEecChhhhhhhh
Q psy16556         40 EPLAVGVHACKRS--GVGLGTSVLVLSA--GPIGLVTILAAKAYGA---RVICVCKYVGIRIFPYK   98 (100)
Q Consensus        40 ~~~~ta~~~~~~~--~~~~g~~vli~G~--G~~G~~~~~l~~~~g~---~~v~~~~~~~~~~~~~~   98 (100)
                      .|...| ..++..  .+++|++||.+|+  |-....+.+++...|.   .+|+.++.+++-.+.++
T Consensus        63 ~P~~~a-~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          63 APHMHA-FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             CHHHHH-HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             hhhhHH-HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            344433 344443  7899999999997  4455566666766664   24999999888766654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.56  E-value=0.052  Score=32.79  Aligned_cols=48  Identities=17%  Similarity=0.077  Sum_probs=37.0

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         43 AVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        43 ~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +.-+.+++..+ --...+++++|+|..|..+.++....+.++++.+|+.
T Consensus        11 Agll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          11 AAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            33444554433 3457889999999999999999999999999999864

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.50  E-value=0.012  Score=35.80  Aligned_cols=38  Identities=21%  Similarity=0.121  Sum_probs=29.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe-cChhhhhhh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCK-YVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~-~~~~~~~~~   97 (100)
                      -+||.|+ +++|+.+++.....|++ |+..+ +++++.+.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~~~~~~~~   42 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEV   42 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHH
Confidence            4678898 89999999999999999 76654 455555543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.013  Score=36.75  Aligned_cols=31  Identities=32%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      ++|||.|+ |-+|..++..+...|.+ |+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~-V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYL-PVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            68999998 99999999999889988 888763

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.47  E-value=0.012  Score=34.80  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      ++|+|+||.|+.+...+...|.++|.+++.
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            789999999999988888888765777654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.46  E-value=0.013  Score=34.11  Aligned_cols=47  Identities=15%  Similarity=0.002  Sum_probs=33.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...++++|++||=+|+|. |...+.+++. +. +|+++|.+++..+.+++
T Consensus        27 ~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             HHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHH
Confidence            567899999999998742 2223445543 44 49999999998888764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.37  E-value=0.014  Score=36.57  Aligned_cols=34  Identities=12%  Similarity=0.049  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      ..-+++||.|+ |-+|..++..+...|.+ |+++++
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            34578999998 99999999999999998 998874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.35  E-value=0.015  Score=36.00  Aligned_cols=29  Identities=21%  Similarity=0.232  Sum_probs=26.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +|||.|+ |-+|..+++.+...|.+ |++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~-V~~id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGID-LIVFD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCE-EEEEE
Confidence            7999998 99999999988888998 88886

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.32  E-value=0.02  Score=30.02  Aligned_cols=37  Identities=11%  Similarity=0.054  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHH-HHHHHHcCCcEEEEEecC
Q psy16556         53 GVGLGTSVLVLSAGPIGLVT-ILAAKAYGARVICVCKYV   90 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~-~~l~~~~g~~~v~~~~~~   90 (100)
                      .++..+++.++|-|++|+.+ +++++..|.+ |...|..
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~   41 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIA   41 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCC
Confidence            35677899999998888776 8999999998 9998864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.03  Score=32.09  Aligned_cols=38  Identities=11%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhh
Q psy16556         57 GTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRI   94 (100)
Q Consensus        57 g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~   94 (100)
                      ..+|.|+|+|.+|..++..+...|. ++++.+|.++++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            3579999999999999888887774 5699998887654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.29  E-value=0.018  Score=36.22  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      .+.+|++||-+|+|. |.+.+.+++ .|+++|++++.++.
T Consensus        30 ~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          30 HLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             ccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            456899999999875 555555555 68877999998764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.27  E-value=0.0098  Score=35.57  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+||.|+.+...+...|.++|.+++..+
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            478999999999998888788876577776543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.18  E-value=0.033  Score=33.28  Aligned_cols=47  Identities=19%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .....++.++||=+|+|. |..+..+++ .|++ |+++|.+++-.+.+++
T Consensus        35 ~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~~-v~gvD~s~~mi~~a~~   81 (251)
T d1wzna1          35 KEDAKREVRRVLDLACGT-GIPTLELAE-RGYE-VVGLDLHEEMLRVARR   81 (251)
T ss_dssp             HHTCSSCCCEEEEETCTT-CHHHHHHHH-TTCE-EEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCEEEEeCCCC-Cccchhhcc-cceE-EEEEeecccccccccc
Confidence            455677788999999976 666777766 5777 9999999987776653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.016  Score=36.19  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-H-cCCcEEEEEecCh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAK-A-YGARVICVCKYVG   91 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~-~-~g~~~v~~~~~~~   91 (100)
                      ....|+|+|+|+.|+.+...+. . .|.+ |.+++.++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~-~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLK-VCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEEcCC
Confidence            3455999999999999766554 3 5888 99888764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.06  E-value=0.023  Score=33.92  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=24.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCc--EEEEEec
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGAR--VICVCKY   89 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~--~v~~~~~   89 (100)
                      +|+|+|+||.|+.++..+..+|.+  +|.+++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk   35 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDC   35 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec
Confidence            689999999999888877766643  3677764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.033  Score=31.10  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~~   95 (100)
                      +|.|+|+|.+|..++..+...+ +++++..|.++++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            6889999999998877666655 356999988877654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.99  E-value=0.034  Score=31.14  Aligned_cols=36  Identities=11%  Similarity=0.064  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CcEEEEEecChhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYG-ARVICVCKYVGIRI   94 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g-~~~v~~~~~~~~~~   94 (100)
                      +|.|+|+|.+|..++..+...| +++++.+|.++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            6889999999998877777665 46799999888774

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.96  E-value=0.077  Score=32.29  Aligned_cols=33  Identities=12%  Similarity=0.252  Sum_probs=27.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEe
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAK-AYGARVICVCK   88 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~   88 (100)
                      -.|++|+|.|.|.+|..+++++. ..|++ |+.+.
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~k-vv~vs   63 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMK-VVAVS   63 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcc-eeecc
Confidence            37899999999999999998775 57888 66553

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.94  E-value=0.051  Score=32.14  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...++ .|++||=.|+|. |.+.+. +...|+++|+.+|.+++-.+.+++
T Consensus        43 ~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~   89 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKR   89 (197)
T ss_dssp             HHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHH
Confidence            34444 589999999863 333333 455787779999999988887664

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.82  E-value=0.03  Score=31.37  Aligned_cols=36  Identities=8%  Similarity=-0.012  Sum_probs=29.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      +|-|+|.|.+|...+.-++..|.+ |++.++++++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~~~~~~~   37 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSLEGRSPST   37 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECCTTCCHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEcCchhHHH
Confidence            588999999999999988888988 888876665543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.01  Score=35.62  Aligned_cols=44  Identities=11%  Similarity=0.002  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+|.+||-+|+|. |..+..+++..+.+ +++++.+++-.+.+++
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~~-v~~id~s~~~~~~a~~   94 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPIDE-HWIIECNDGVFQRLRD   94 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEEE-EEEEECCHHHHHHHHH
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCCe-EEEeCCCHHHHHHHHH
Confidence            46789999999863 34556677765555 9999999988887754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.72  E-value=0.03  Score=31.38  Aligned_cols=37  Identities=11%  Similarity=0.184  Sum_probs=27.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRI   94 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~   94 (100)
                      .+|.|+|+|.+|..++..+...+. .+++.+|.++++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~   39 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKA   39 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---C
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCcc
Confidence            468999999999998877777664 5699999887763

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.029  Score=35.15  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=26.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|||+|+ |-+|..++..+...|.+ |+++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~-V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHD-VIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            6999998 99999999999999988 888864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.015  Score=36.01  Aligned_cols=32  Identities=16%  Similarity=0.127  Sum_probs=26.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++|||.|+ |-+|..+++.+...|.. +++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~-vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCE-EEEecCc
Confidence            58999998 99999999999888987 6666443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.58  E-value=0.04  Score=31.85  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +|.|+|+|..|.+.+..+...|.+ |....+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~-V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNE-VRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCE-EEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCE-EEEEEec
Confidence            688999999999988888888877 8888664

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.57  E-value=0.011  Score=33.89  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGAR   82 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~   82 (100)
                      .+|+|+|+|++|+-++..++..|.+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~   28 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQ   28 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCc
Confidence            3499999999999998888888876

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.013  Score=38.75  Aligned_cols=34  Identities=29%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+|||+|+|++|.-++..+-..|..++.++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            5799999999999999999999998898887643

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.017  Score=36.27  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=25.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      |+|+|+|+.|+.++.-+...|.+ |++++..
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~~-V~lleK~   39 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQT-CALLSKV   39 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTCC-CEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCe-EEEEeCC
Confidence            89999999999988888888998 8777653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.50  E-value=0.022  Score=33.77  Aligned_cols=44  Identities=14%  Similarity=0.095  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+++.+||=+|+| .|..+..+++ .|.+ |+++|.+++-.+.+++
T Consensus        39 ~~~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~giD~s~~~l~~a~~   82 (246)
T d2avna1          39 YLKNPCRVLDLGGG-TGKWSLFLQE-RGFE-VVLVDPSKEMLEVARE   82 (246)
T ss_dssp             HCCSCCEEEEETCT-TCHHHHHHHT-TTCE-EEEEESCHHHHHHHHH
T ss_pred             hcCCCCEEEEECCC-Cchhcccccc-cceE-EEEeeccccccccccc
Confidence            35578899999987 5677777765 5887 9999999998887764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.49  E-value=0.026  Score=34.47  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=26.2

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC-hhhh
Q psy16556         60 VLVLSA-GPIGLVTILAAKAYGARVICVCKYV-GIRI   94 (100)
Q Consensus        60 vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~-~~~~   94 (100)
                      ++|.|+ +++|..+++.+...|++ |++++++ +++.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~   40 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEA   40 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCCHHHH
Confidence            466788 89999999999999999 7766554 4433

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.47  E-value=0.038  Score=34.69  Aligned_cols=31  Identities=29%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +.|||.|+ |-+|..++..+...|.+ |+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEEC
Confidence            57899998 99999999988889988 888763

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.015  Score=32.75  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=27.7

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGAR   82 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~   82 (100)
                      .....|++|+|+|+|.+|.-++..+...|++
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            4567899999999999999999999999876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.43  E-value=0.026  Score=31.61  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=23.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+|+|+|+|++|.-++..++. +.+ |.++++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~-Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYE-VTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSE-EEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCC-EEEEecc
Confidence            479999999999887766654 555 7777653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.43  E-value=0.045  Score=31.66  Aligned_cols=32  Identities=16%  Similarity=0.034  Sum_probs=25.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCc-EEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGAR-VICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~~   90 (100)
                      +|+|+|+|..|+-++.-++..+.. .|++++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            699999999999988888877543 37777654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.39  E-value=0.027  Score=32.95  Aligned_cols=34  Identities=15%  Similarity=-0.004  Sum_probs=26.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEecCh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGAR-VICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~-~v~~~~~~~   91 (100)
                      ++|||.|+ |.+|..++..+...|.. +|++..+++
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            78999999 99999999988888763 366665543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.043  Score=30.25  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=26.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH----HHcCCcEEEEEecChh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAA----KAYGARVICVCKYVGI   92 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~----~~~g~~~v~~~~~~~~   92 (100)
                      +.+++++|+|+|.+|.=++..+    +..|.+ |+.+++++.
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~-Vt~i~~~~~   75 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGTE-VIQLFPEKG   75 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCCE-EEEeccccc
Confidence            4578999999999985543322    457888 888876554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.30  E-value=0.048  Score=30.60  Aligned_cols=37  Identities=24%  Similarity=0.145  Sum_probs=30.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEecChhhh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGA-RVICVCKYVGIRI   94 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~   94 (100)
                      .+|.|+|+ |.+|..++.++...+. ++++.+|.++.+-
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~   39 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG   39 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch
Confidence            37899997 9999999998888875 7788888776543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.21  E-value=0.0056  Score=36.27  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCc
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGAR   82 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~   82 (100)
                      +|+|+|+|.+|+.++..+...|.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC
Confidence            699999999999887777777764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.065  Score=32.40  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         60 VLVLSA-GPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        60 vli~G~-G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      |||.|+ |-+|..++..+...|...|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            789998 99999998888888975488875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.99  E-value=0.072  Score=31.82  Aligned_cols=37  Identities=11%  Similarity=0.118  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH--------------------cCCcEEEEEecCh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKA--------------------YGARVICVCKYVG   91 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~--------------------~g~~~v~~~~~~~   91 (100)
                      ..|++|+|+|+|.+++=++.++..                    .|+++|..+.++.
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            358999999999999888887776                    5898899997654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.99  E-value=0.055  Score=31.38  Aligned_cols=42  Identities=19%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +++| +||=+|+| .|..+..+++ .|.+ |+++|.+++-++.+++
T Consensus        29 ~~~g-rvLDiGcG-~G~~~~~la~-~g~~-v~gvD~s~~~l~~a~~   70 (198)
T d2i6ga1          29 VAPG-RTLDLGCG-NGRNSLYLAA-NGYD-VTAWDKNPASMANLER   70 (198)
T ss_dssp             SCSC-EEEEETCT-TSHHHHHHHH-TTCE-EEEEESCHHHHHHHHH
T ss_pred             CCCC-cEEEECCC-CCHHHHHHHH-Hhhh-hccccCcHHHHHHHHH
Confidence            3444 89999997 5666666665 5887 9999999988876653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=0.037  Score=34.90  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         51 RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        51 ~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .....+|++||-+|+|. |.+.+.+ ...|++.|++++.++
T Consensus        33 ~~~~~~~~~VLDlGcGt-G~ls~~a-a~~Ga~~V~avd~s~   71 (328)
T d1g6q1_          33 NKDLFKDKIVLDVGCGT-GILSMFA-AKHGAKHVIGVDMSS   71 (328)
T ss_dssp             HHHHHTTCEEEEETCTT-SHHHHHH-HHTCCSEEEEEESST
T ss_pred             ccccCCcCEEEEeCCCC-CHHHHHH-HHhCCCEEEEEeCCH
Confidence            34556899999999863 4444433 446887799999875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.93  E-value=0.023  Score=34.98  Aligned_cols=43  Identities=14%  Similarity=-0.028  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcC--CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSA--GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~--G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+++|++||-.|+  |+.++   .+++. |..+|+++|.+++..+.+++
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l---~~a~~-~~~~V~avd~n~~a~~~~~~  148 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSL---PIAVY-GKAKVIAIEKDPYTFKFLVE  148 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHH---HHHHH-TCCEEEEECCCHHHHHHHHH
T ss_pred             hcCCccEEEECcceEcHHHH---HHHHh-CCcEEEEecCCHHHHHHHHH
Confidence            4689999998876  45554   45554 44349999999999888764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.92  E-value=0.048  Score=34.10  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=23.6

Q ss_pred             EEEEEcCCHHHHHH-HHHHH---HcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVT-ILAAK---AYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~-~~l~~---~~g~~~v~~~~~~   90 (100)
                      -|+|+|+|+.|+.+ +++++   ..|++ |++++..
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~-V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLK-VTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCC-EEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCE-EEEEeCC
Confidence            38999999999875 55554   36898 8888753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.82  E-value=0.27  Score=30.89  Aligned_cols=45  Identities=4%  Similarity=-0.003  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHH-cCCcEEEEEecChhhhhhh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKA-YGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~-~g~~~v~~~~~~~~~~~~~   97 (100)
                      .-+..+++.|+|+|..+...++.... +..++|.+.++++++.+..
T Consensus       121 a~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~  166 (320)
T d1omoa_         121 ARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKF  166 (320)
T ss_dssp             SCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHH
T ss_pred             ccCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHH
Confidence            33456789999999999887776665 6788899999998887654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.76  E-value=0.058  Score=34.21  Aligned_cols=31  Identities=13%  Similarity=0.145  Sum_probs=26.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|||.|+ |-+|..++..+...|...|+.++.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            6999998 999999999998889885666653

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.034  Score=34.33  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=23.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      -|+|+|+|+.|+.++.-++..| + |++++..+
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~-V~llEK~~   39 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-Q-VIVLSKGP   39 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-C-EEEECSSC
T ss_pred             CEEEECccHHHHHHHHHhhcCC-C-EEEEECCC
Confidence            4899999999988776666555 6 88886543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.69  E-value=0.097  Score=31.00  Aligned_cols=51  Identities=12%  Similarity=0.027  Sum_probs=34.8

Q ss_pred             hhHHHHHHHH-Hhc---CCCCCCEEEEEcCCHHHHHHHHHHH--------------------HcCCcEEEEEecC
Q psy16556         40 EPLAVGVHAC-KRS---GVGLGTSVLVLSAGPIGLVTILAAK--------------------AYGARVICVCKYV   90 (100)
Q Consensus        40 ~~~~ta~~~~-~~~---~~~~g~~vli~G~G~~G~~~~~l~~--------------------~~g~~~v~~~~~~   90 (100)
                      ..+...|+.. +..   ....|++|+|+|+|.+++=++.++.                    ..|+++|..+.++
T Consensus        18 ~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          18 VDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             HHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             HHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            3455555543 111   1235899999999999987766654                    5789889888664

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.54  E-value=0.019  Score=31.56  Aligned_cols=37  Identities=5%  Similarity=-0.026  Sum_probs=24.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHH-HcCCcEEEEEecChhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAK-AYGARVICVCKYVGIRI   94 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~-~~g~~~v~~~~~~~~~~   94 (100)
                      .+|+|+|+|..|.+++...+ ..+++-+-.+|.++++.
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~   41 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV   41 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc
Confidence            47999999999997765433 24666455556666554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=93.42  E-value=0.24  Score=31.58  Aligned_cols=44  Identities=14%  Similarity=0.067  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHH-HHcCCcEEEEEecChhhhhh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAA-KAYGARVICVCKYVGIRIFP   96 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~-~~~g~~~v~~~~~~~~~~~~   96 (100)
                      .-+..+++.|+|+|..+..-++.. ..++.++|.+.++++++.+.
T Consensus       124 A~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~  168 (340)
T d1x7da_         124 ARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAK  168 (340)
T ss_dssp             SCTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             hccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHH
Confidence            335568899999999888776654 45789999999999887654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.073  Score=29.13  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCHH--H------HH---HHHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPI--G------LV---TILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~--G------~~---~~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      ..++|||+|+||.  |      .+   ++..+|..|.+ ++.+.+||+-.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~-~IliN~NPeTV   51 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE-TIMVNCNPETV   51 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE-EEEECCCTTSS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe-EEEEecChhhh
Confidence            4578999999752  2      33   44555567998 88888888754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.33  E-value=0.045  Score=33.73  Aligned_cols=44  Identities=14%  Similarity=0.055  Sum_probs=31.8

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .+.+++++||=+|+|. |..++.+++. |.+ |+++|.+++-++.++
T Consensus        52 l~~~~~~~vLD~GcG~-G~~~~~la~~-g~~-v~gvD~S~~ml~~A~   95 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGT-GVDSIMLVEE-GFS-VTSVDASDKMLKYAL   95 (292)
T ss_dssp             HHHTTCCEEEESSCTT-SHHHHHHHHT-TCE-EEEEESCHHHHHHHH
T ss_pred             hhhcCCCEEEEecCCC-cHHHHHHHHc-CCe-eeeccCchHHHHHHH
Confidence            3445678999988863 4456666664 887 999999998776654

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=93.26  E-value=0.11  Score=30.23  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=25.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +.++++|+|+|+.|..+..+++..+.+ ++...
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~-~~~f~   32 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYK-ECIFL   32 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCC-EEEEC
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCc-EEEEE
Confidence            357899999999999999999999988 55543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.24  E-value=0.054  Score=31.19  Aligned_cols=41  Identities=10%  Similarity=0.054  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCHHHHHH---HHHHHH--cCCcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVT---ILAAKA--YGARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~---~~l~~~--~g~~~v~~~~~~~~~~~~   96 (100)
                      |+-++.|+|+|.+|...   ..+++.  +...+++.+|.+++|.+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~   46 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA   46 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHH
Confidence            46689999999888542   223332  223459999999988764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.20  E-value=0.16  Score=26.02  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=27.1

Q ss_pred             CEEEEEcCCHHHHHH-HHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVT-ILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~-~~l~~~~g~~~v~~~~~~~   91 (100)
                      .++-++|-|++|+.. +++++..|.. |...|..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGND-VYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCe-EEEEeCCC
Confidence            467788988888864 7889999998 99998765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.16  E-value=0.059  Score=28.43  Aligned_cols=32  Identities=16%  Similarity=0.033  Sum_probs=20.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      -.|++|+|+|+|..|.=++.-+.....+ ++..
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~-v~~~   61 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKH-PIYQ   61 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCS-SEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCE-EEEE
Confidence            4689999999998876544433333444 4433

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.09  E-value=0.12  Score=32.44  Aligned_cols=35  Identities=9%  Similarity=0.068  Sum_probs=28.1

Q ss_pred             CCEEEEEcCC---HHHHHHHHHHHHcCCcEEEEEecChh
Q psy16556         57 GTSVLVLSAG---PIGLVTILAAKAYGARVICVCKYVGI   92 (100)
Q Consensus        57 g~~vli~G~G---~~G~~~~~l~~~~g~~~v~~~~~~~~   92 (100)
                      ++-.||.|+|   ++|+.+++.+...|++ |+.+.++++
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~-V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCE-EEEEeCchh
Confidence            5667888953   8999999999999999 877765544

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.36  Score=30.58  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=36.8

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe--cChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK--YVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~--~~~~~~~~~~~   99 (100)
                      +...+++++.|+...+|..|.++...++.+|.+-++++.  .+++|.+.++.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~  141 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRA  141 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHH
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHh
Confidence            456677888877777899999999999999998444443  25556665553

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.081  Score=32.91  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=23.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc--CCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAY--GARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~--g~~~v~~~~~~   90 (100)
                      -|||+|+|..|+.++.-++..  |++ |++++..
T Consensus         7 DVlVIG~G~AGl~AA~~a~~~~~g~~-V~lleK~   39 (311)
T d1kf6a2           7 DLAIVGAGGAGLRAAIAAAQANPNAK-IALISKV   39 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCC-EEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCE-EEEEECC
Confidence            389999999999876555544  777 8777643

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=92.96  E-value=0.077  Score=30.05  Aligned_cols=34  Identities=24%  Similarity=0.175  Sum_probs=27.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEecChh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAY--GARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~--g~~~v~~~~~~~~   92 (100)
                      ++|.|+|+ |.+|..+.++.+..  .++ |++...+..
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~-v~~lsa~~N   39 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQ-VIALTANRN   39 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEE-EEEEEESSC
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcE-EEEEEeCCC
Confidence            68999999 99999999999885  456 777655443

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.95  E-value=0.056  Score=33.87  Aligned_cols=31  Identities=16%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEe
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGAR-VICVCK   88 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~~-~v~~~~   88 (100)
                      .+|||.|+ |-+|..++..+...|.+ ++++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            57999998 99999998888877865 255544

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.93  E-value=0.16  Score=28.33  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=28.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEecChh
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGA-RVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~-~~v~~~~~~~~   92 (100)
                      +|.|+|+ |.+|..++.++...+. ++++.+|.+++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            5899997 9999999988888884 66888887653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.87  E-value=0.061  Score=29.17  Aligned_cols=38  Identities=11%  Similarity=-0.040  Sum_probs=29.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      +.++|.|.|.+|..+++-++  +.+ |++++.++++.+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~-i~vi~~d~~~~~~~~   38 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSE-VFVLAEDENVRKKVL   38 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGG-EEEEESCTTHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCC-CEEEEcchHHHHHHH
Confidence            35889999999998877664  445 778888888777654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=92.77  E-value=0.08  Score=31.85  Aligned_cols=43  Identities=23%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++++++||=+|+|. |..+..+++. |..+|+++|.+++-++.++
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~   64 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDAR   64 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHH
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHH
Confidence            67899999999875 4445566554 5545999999999887765

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=92.74  E-value=0.39  Score=29.34  Aligned_cols=50  Identities=18%  Similarity=0.235  Sum_probs=35.8

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe--cChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK--YVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~--~~~~~~~~~~~   99 (100)
                      +...+.+++.|+...+|..|+++...++.+|.+.++++.  .++.|.+.++.
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~  104 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRA  104 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHH
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHH
Confidence            455667777777777799999999999999998444443  25556665543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=92.69  E-value=0.059  Score=31.84  Aligned_cols=45  Identities=16%  Similarity=0.073  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHH---cCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKA---YGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~---~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .++++.+||=+|+|. |..+..+++.   -+++ |+++|.+++-++.+++
T Consensus        36 ~~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~   83 (225)
T d1im8a_          36 FVTADSNVYDLGCSR-GAATLSARRNINQPNVK-IIGIDNSQPMVERCRQ   83 (225)
T ss_dssp             HCCTTCEEEEESCTT-CHHHHHHHHTCCCSSCE-EEEECSCHHHHHHHHH
T ss_pred             hcCCCCEEEEeccch-hhHHHHHHHhhcCCCCc-eEEeCCCHHHHHHHHH
Confidence            368899999999853 3334455554   4666 9999999988777754

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.64  E-value=0.16  Score=29.60  Aligned_cols=43  Identities=16%  Similarity=0.148  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         56 LGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        56 ~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++++|.|+|-|+-|.+-.+-+|..|.+.++.........+.++
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~   57 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE   57 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh
Confidence            4789999999999999999999999984444433333344443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.11  Score=32.01  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         60 VLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        60 vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      +||.|+ +++|..++..+...|++
T Consensus         5 vlITGassGIG~a~A~~la~~Ga~   28 (285)
T d1jtva_           5 VLITGCSSGIGLHLAVRLASDPSQ   28 (285)
T ss_dssp             EEESCCSSHHHHHHHHHHHTCTTC
T ss_pred             EEEccCCCHHHHHHHHHHHHCCCC
Confidence            456698 89999999988889987

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=92.45  E-value=0.095  Score=32.62  Aligned_cols=31  Identities=19%  Similarity=0.366  Sum_probs=24.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      -++|+|+|+-|..++.-+...|.+ |++++.-
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~k-VlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYK-VAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCe-EEEEecC
Confidence            389999999998876666667988 9999853

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.38  E-value=0.2  Score=28.88  Aligned_cols=47  Identities=19%  Similarity=0.111  Sum_probs=33.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +...+.++++||=+|+|. |..++.+++ .+.+ |+++|.++.-.+.+++
T Consensus        46 ~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~~-v~~iD~s~~~i~~a~~   92 (194)
T d1dusa_          46 ENVVVDKDDDILDLGCGY-GVIGIALAD-EVKS-TTMADINRRAIKLAKE   92 (194)
T ss_dssp             HHCCCCTTCEEEEETCTT-SHHHHHHGG-GSSE-EEEEESCHHHHHHHHH
T ss_pred             HhCCcCCCCeEEEEeecC-ChhHHHHHh-hccc-cceeeeccccchhHHH
Confidence            667788999999998753 233344444 3455 9999999888877753

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.27  E-value=0.15  Score=28.74  Aligned_cols=38  Identities=8%  Similarity=0.156  Sum_probs=27.6

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLSAGPIGLV-TILAAKAY-GARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~G~~G~~-~~~l~~~~-g~~~v~~~~~~~~~~~~~   97 (100)
                      ++.|+|+|..|.- .+...+.. +.+ ++++++++++.+.+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~-~~~~d~~~~~~~~~   42 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIE-LVLCTRNPKVLGTL   42 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEE-EEEECSCHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcE-EEEEECCHHHHHHH
Confidence            6889999999854 56666655 445 77888888776654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.17  Score=27.77  Aligned_cols=38  Identities=32%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCHH--H------HHH---HHHHHHcCCcEEEEEecChhhh
Q psy16556         56 LGTSVLVLSAGPI--G------LVT---ILAAKAYGARVICVCKYVGIRI   94 (100)
Q Consensus        56 ~g~~vli~G~G~~--G------~~~---~~l~~~~g~~~v~~~~~~~~~~   94 (100)
                      .-++|||+|+||.  |      .++   +..+|..|.+ ++.+.+||+-.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~-~iliN~NP~TV   54 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR-VINVNSNPATI   54 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE-EEEECSCTTCG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe-EEEecCchHhh
Confidence            4589999999762  2      444   4445557999 88888888754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.95  E-value=0.14  Score=32.03  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSAGPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      -|+|+|+|.-|..++.-+...|.+ |++++.-
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~-VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQ-TLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCe-EEEEecC
Confidence            388999999997765555557998 9999863

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.15  Score=28.78  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=26.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC--CcEEEEEecChh
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYG--ARVICVCKYVGI   92 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g--~~~v~~~~~~~~   92 (100)
                      +++.|+|+ |.+|..+..+.+...  ++ |+....+..
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~-v~~Lsa~~N   38 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFR-VVALVAGKN   38 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEE-EEEEEESSC
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcE-EEEEEecCc
Confidence            36899999 999999999998863  55 666654433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.68  E-value=0.5  Score=27.11  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             HHHHHHhcCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         45 GVHACKRSGVG-LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        45 a~~~~~~~~~~-~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      .+..++..++. .|++++|+|. ..+|.=+..++...|++ |+.+...
T Consensus        26 ii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gat-Vt~~~~~   72 (170)
T d1a4ia1          26 CLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNAT-VTTCHSK   72 (170)
T ss_dssp             HHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTT
T ss_pred             HHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCc-eEEEecc
Confidence            33344555554 7999999998 57999999999999999 7777543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.43  E-value=0.22  Score=31.48  Aligned_cols=31  Identities=19%  Similarity=0.226  Sum_probs=24.5

Q ss_pred             CCEEEEEcC-CHHHHHHHH-HHHHcCCcEEEEEe
Q psy16556         57 GTSVLVLSA-GPIGLVTIL-AAKAYGARVICVCK   88 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~-l~~~~g~~~v~~~~   88 (100)
                      +-+|||.|+ |-+|..++. |++..|.+ |+++|
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~-V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHS-VVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCE-EEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCE-EEEEe
Confidence            457999998 999987665 55667887 88886

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.40  E-value=0.53  Score=27.40  Aligned_cols=45  Identities=20%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             hcCCCCCCEEEEEcCC--HHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         51 RSGVGLGTSVLVLSAG--PIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        51 ~~~~~~g~~vli~G~G--~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+--.|++||=.|+|  .++.   .+ ...|+.+|+++|.+++..+.+++
T Consensus        41 ~~~dl~g~~vLDlg~GtG~l~i---~a-~~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTGVLSY---GA-LLLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             HTTSSTTCEEEEETCTTCHHHH---HH-HHTTCSEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCCEEEECcCcchHHHH---HH-HHcCCCEEEEEcCcHHHHHHHHH
Confidence            3444468899988874  4443   33 35687679999999988877654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.11  E-value=0.26  Score=26.88  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=25.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      +|.|+|+ |-+|+...+++...+.+.+..++.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~   33 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   33 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence            6899998 999999999999999884444443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.84  E-value=0.21  Score=28.51  Aligned_cols=37  Identities=14%  Similarity=-0.053  Sum_probs=27.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCcEEEE-EecChhhhhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAY-GARVICV-CKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~-g~~~v~~-~~~~~~~~~~   96 (100)
                      ++.|+|+|.+|...++..+.. +.+ +++ .++++++.+.
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~-i~ai~d~~~~~~~~   41 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNAT-ISGVASRSLEKAKA   41 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEE-EEEEECSSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCE-EEEEEeCCcccccc
Confidence            588999999999888888776 556 654 4667666443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.71  Score=26.36  Aligned_cols=44  Identities=16%  Similarity=0.200  Sum_probs=34.0

Q ss_pred             HHHHhcCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         47 HACKRSGV-GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        47 ~~~~~~~~-~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ..++..++ -.|++++|+|. ..+|.-+..++...|++ |+.+....
T Consensus        26 ~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gat-Vt~~h~~t   71 (166)
T d1b0aa1          26 TLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRFT   71 (166)
T ss_dssp             HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCE-EEEECSSC
T ss_pred             HHHHHcCcccccceEEEEeccccccHHHHHHHHHhhcc-cccccccc
Confidence            34455554 46999999998 57999999999999999 87775543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=0.054  Score=30.11  Aligned_cols=37  Identities=8%  Similarity=-0.074  Sum_probs=25.0

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         61 LVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        61 li~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      -++|+|.+|..+++.++. +...+.+..+++++.+.+.
T Consensus         3 gfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~   39 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLA   39 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHH
T ss_pred             EEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchh
Confidence            367999999998877655 3332456788888887654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=90.38  E-value=0.16  Score=31.37  Aligned_cols=45  Identities=24%  Similarity=0.083  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ....++|||+|+|. |..+-.+++..+.++|.+++-+++=.+.+++
T Consensus        73 ~~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~  117 (274)
T d1iy9a_          73 HPNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKK  117 (274)
T ss_dssp             SSSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHH
Confidence            34568999998753 2334556676777779999999887777654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=90.36  E-value=0.47  Score=28.45  Aligned_cols=48  Identities=6%  Similarity=-0.009  Sum_probs=34.8

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .++..+++++++|+=+|.|. |.++-.+++. +.+ |++++.+++-.+.++
T Consensus        13 iv~~~~~~~~d~VlEIGpG~-G~LT~~Ll~~-~~~-v~avE~D~~l~~~l~   60 (235)
T d1qama_          13 IMTNIRLNEHDNIFEIGSGK-GHFTLELVQR-CNF-VTAIEIDHKLCKTTE   60 (235)
T ss_dssp             HHTTCCCCTTCEEEEECCTT-SHHHHHHHHH-SSE-EEEECSCHHHHHHHH
T ss_pred             HHHhcCCCCCCeEEEECCCc-hHHHHHHHhC-cCc-eEEEeeccchHHHHH
Confidence            44667889999999999753 4455566654 555 999998877666554

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.33  Score=28.33  Aligned_cols=32  Identities=9%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCc-EEEEEec
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGAR-VICVCKY   89 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~-~v~~~~~   89 (100)
                      .+++|+|+|..|..++.-++..+.+ +|+.++.
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~   37 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSE   37 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            4688999999999988888877653 4766654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.10  E-value=0.16  Score=31.89  Aligned_cols=44  Identities=16%  Similarity=0.067  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..++|||+|+|. |..+-++++.....+|.+++.+++=.+.+++
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~  119 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKR  119 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHh
Confidence            4568999999853 3445566666666569999999887776653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=89.98  E-value=0.26  Score=30.84  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=22.9

Q ss_pred             EEEEcCCHHHHHHHH-HHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLVTIL-AAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~~~~-l~~~~g~~~v~~~~~~   90 (100)
                      |+|+|+|..|..++. |++ .|.+ |++++.-
T Consensus        10 vIVVGsG~aG~v~A~rLae-aG~~-VlvLEaG   39 (370)
T d3coxa1          10 ALVIGSGYGGAVAALRLTQ-AGIP-TQIVEMG   39 (370)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCC-EEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHH-CCCe-EEEEeCC
Confidence            788999999977654 555 6988 9999863

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=89.96  E-value=0.56  Score=26.34  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=23.9

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHHcCCcEEEEEe-cChh
Q psy16556         58 TSVLVLSAGPIGL-VTILAAKAYGARVICVCK-YVGI   92 (100)
Q Consensus        58 ~~vli~G~G~~G~-~~~~l~~~~g~~~v~~~~-~~~~   92 (100)
                      -++.|+|+|.+|. .+.++.+....-+++++. ++++
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~   41 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA   41 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence            4789999999986 567887766443366654 4443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.16  Score=27.50  Aligned_cols=41  Identities=10%  Similarity=0.038  Sum_probs=28.3

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .....-.|++|+|+|+|..+.=.+..+.....+ |+.+.+.+
T Consensus        20 cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~-V~li~r~~   60 (126)
T d1trba2          20 SDGFFYRNQKVAVIGGGNTAVEEALYLSNIASE-VHLIHRRD   60 (126)
T ss_dssp             HHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSE-EEEECSSS
T ss_pred             cchHHhCCCEEEEECCCHHHHHHHHHHhhcCCc-EEEEeecc
Confidence            345566899999999997765555555555555 88887654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.17  Score=29.70  Aligned_cols=45  Identities=13%  Similarity=-0.045  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ...++.+||=+|+|. |..+..+++..+.+ |+++|.+++-++.+++
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~ak~  101 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFRE-VDMVDITEDFLVQAKT  101 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCSE-EEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCCE-EEEeecCHHHhhcccc
Confidence            456788999999863 33444555444444 9999999987776653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=89.67  E-value=0.16  Score=29.96  Aligned_cols=44  Identities=14%  Similarity=-0.145  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +...+++||=+|+|. |..+..++ ..|.+ |+++|.+++-.+.+++
T Consensus        17 ~~~~~~~VLDiGcG~-G~~~~~l~-~~g~~-v~giD~s~~~i~~a~~   60 (225)
T d2p7ia1          17 PFFRPGNLLELGSFK-GDFTSRLQ-EHFND-ITCVEASEEAISHAQG   60 (225)
T ss_dssp             GGCCSSCEEEESCTT-SHHHHHHT-TTCSC-EEEEESCHHHHHHHHH
T ss_pred             hhCCCCcEEEEeCCC-cHHHHHHH-HcCCe-EEEEeCcHHHhhhhhc
Confidence            445577899999864 44444444 45777 9999999988887753

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.61  E-value=0.13  Score=29.14  Aligned_cols=39  Identities=5%  Similarity=-0.145  Sum_probs=25.5

Q ss_pred             EEEEEcCCHHH--HHHHHHHHHc---CCcEEEEEecChhhhhhh
Q psy16556         59 SVLVLSAGPIG--LVTILAAKAY---GARVICVCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~G~~G--~~~~~l~~~~---g~~~v~~~~~~~~~~~~~   97 (100)
                      +|.|+|+|.+|  .+...+++..   ..+.+...|.+++|.+..
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~   45 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIV   45 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHH
Confidence            58899998665  3333334332   234599999999887644

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.50  E-value=0.97  Score=29.08  Aligned_cols=48  Identities=17%  Similarity=0.103  Sum_probs=33.6

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec--Chhhhhhhhc
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY--VGIRIFPYKK   99 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~--~~~~~~~~~~   99 (100)
                      .+++++.+|+-..+|..|.+++..++.+|.+.++++..  +++|.+.++.
T Consensus       139 ~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira  188 (382)
T d1wkva1         139 RRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRL  188 (382)
T ss_dssp             TTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHH
T ss_pred             hccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccc
Confidence            35677776555566999999999999999984444432  4556555543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.41  E-value=0.19  Score=31.39  Aligned_cols=44  Identities=18%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..++|||+|+|.- ..+-.+++..+..+|.+++-+++=.+.+++
T Consensus        88 ~~pk~VLiiGgG~G-~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~  131 (295)
T d1inla_          88 PNPKKVLIIGGGDG-GTLREVLKHDSVEKAILCEVDGLVIEAARK  131 (295)
T ss_dssp             SSCCEEEEEECTTC-HHHHHHTTSTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCceEEEecCCch-HHHHHHHhcCCCceEEEecCCHHHHHHHHH
Confidence            44589999987532 334566677777679999999887777654

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=89.34  E-value=0.64  Score=28.67  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      .+...+.+++.|+...+|.-|.++...++..|.+.++++.
T Consensus        53 ~~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p   92 (310)
T d1y7la1          53 EKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMP   92 (310)
T ss_dssp             HHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccch
Confidence            3455667888777777799999999999999999555543

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.27  Score=33.09  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=28.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+|+|+|+|++|.-++.-+-..|...++.+|.+.
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            6799999999999888888888998888887543

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=89.20  E-value=0.29  Score=30.69  Aligned_cols=48  Identities=19%  Similarity=0.043  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHc----C------CcEEEEEec
Q psy16556         42 LAVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAY----G------ARVICVCKY   89 (100)
Q Consensus        42 ~~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~----g------~~~v~~~~~   89 (100)
                      ++.-+++++..+ --...++++.|+|..|..+..+....    |      .++++.+|+
T Consensus         9 lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~   67 (298)
T d1gq2a1           9 VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDS   67 (298)
T ss_dssp             HHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEET
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeC
Confidence            333455564433 33567899999998777665555432    3      345888875

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.01  E-value=0.24  Score=28.28  Aligned_cols=41  Identities=10%  Similarity=0.038  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCCHHHH--HHHHHHHHc-C--CcEEEEEecChhhhhh
Q psy16556         56 LGTSVLVLSAGPIGL--VTILAAKAY-G--ARVICVCKYVGIRIFP   96 (100)
Q Consensus        56 ~g~~vli~G~G~~G~--~~~~l~~~~-g--~~~v~~~~~~~~~~~~   96 (100)
                      +.-+|.|+|+|.+|.  +...+++.. .  ..+++..|.+++|.+.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~   47 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR   47 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHH
Confidence            455799999986653  333444432 2  2459999999998763

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=88.90  E-value=0.098  Score=32.35  Aligned_cols=24  Identities=25%  Similarity=0.126  Sum_probs=20.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCc
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGAR   82 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~   82 (100)
                      +|||.|+ |.+|..+++.+...|..
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~   26 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYP   26 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCC
Confidence            6999998 99999999988877643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.78  E-value=0.37  Score=27.86  Aligned_cols=32  Identities=22%  Similarity=0.197  Sum_probs=22.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      -.|++|+|+|+|..|.=++.-+...+.+ ++.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~-~~~~   61 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAE-LFVF   61 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSE-EEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcc-cccc
Confidence            4689999999998876655555555666 4433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.74  E-value=0.24  Score=30.81  Aligned_cols=44  Identities=23%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..-++|||+|+|. |..+-.+++..+.++|..++-+++=.+.+++
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~  122 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQ  122 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHH
Confidence            4567999999743 2234466777777679999999887777654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.24  Score=30.76  Aligned_cols=46  Identities=22%  Similarity=0.139  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .....++|||+|+|. |..+-.+.+..+..+|++++-+++=.+.+++
T Consensus        75 ~~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~  120 (285)
T d2o07a1          75 SHPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKK  120 (285)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred             hCcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHh
Confidence            445668999998753 2334456666677779999999887777654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.57  E-value=0.13  Score=30.53  Aligned_cols=41  Identities=12%  Similarity=-0.087  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      .++++||=+|+| .|..+..+++ .|.+ |+++|.+++-++.++
T Consensus        36 ~~~~~vLDiGCG-~G~~~~~l~~-~g~~-v~GvD~S~~ml~~A~   76 (246)
T d1y8ca_          36 LVFDDYLDLACG-TGNLTENLCP-KFKN-TWAVDLSQEMLSEAE   76 (246)
T ss_dssp             CCTTEEEEETCT-TSTTHHHHGG-GSSE-EEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEeCc-CCHHHHHHHH-hCCc-cEeeccchhhhhhcc
Confidence            445789999986 3455555554 4776 999999998776664

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.52  E-value=0.29  Score=30.80  Aligned_cols=45  Identities=11%  Similarity=0.025  Sum_probs=28.0

Q ss_pred             HHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHc----C------CcEEEEEec
Q psy16556         45 GVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAY----G------ARVICVCKY   89 (100)
Q Consensus        45 a~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~----g------~~~v~~~~~   89 (100)
                      -+.+++..+ --...+++++|+|..|..++.+....    |      .++++.+|+
T Consensus        12 linAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~   67 (308)
T d1o0sa1          12 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDI   67 (308)
T ss_dssp             HHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeC
Confidence            344554433 33467899999998877766655433    3      234787764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.41  E-value=0.29  Score=27.21  Aligned_cols=36  Identities=11%  Similarity=0.030  Sum_probs=24.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIF   95 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~   95 (100)
                      ++|-++|.|.+|...+.-+...|.. + +..+++++.+
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~-~-~~~~~~~~~~   36 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPT-L-VWNRTFEKAL   36 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCE-E-EECSSTHHHH
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCE-E-EEeCCHHHHH
Confidence            5788999999998877766666654 4 4445555443

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=0.7  Score=26.52  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=27.1

Q ss_pred             CCCCCEEEEE----cCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         54 VGLGTSVLVL----SAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        54 ~~~g~~vli~----G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +.+|++|+|+    ..|+.-..++++.+..|++ |+.
T Consensus       115 i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~-vvg  150 (178)
T d1zn7a1         115 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAE-VLE  150 (178)
T ss_dssp             SCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCE-EEE
T ss_pred             ccCCCeEEEehhhhhhchHHHHHHHHHHHCCCE-EEE
Confidence            5689999998    3499999999999999998 543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=0.48  Score=25.53  Aligned_cols=40  Identities=13%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         51 RSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        51 ~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      .+..-.|++|+|+|+|..+.-.+..+... ++.|+.+.+.+
T Consensus        24 D~~~~~gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~   63 (126)
T d1fl2a2          24 DGPLFKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP   63 (126)
T ss_dssp             HGGGGBTCEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSS
T ss_pred             ChhhcCCceEEEEeCCHHHHHHHHhhhcc-CCceEEEeccc
Confidence            44566799999999987655544444445 44488886543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=87.87  E-value=0.66  Score=27.86  Aligned_cols=48  Identities=17%  Similarity=-0.075  Sum_probs=34.9

Q ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         50 KRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        50 ~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +......+.+||=+|+|. |..+..++.....+ |++++.+++-++.+++
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~~-v~~vD~s~~~l~~a~~  134 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYAT-TDLLEPVKHMLEEAKR  134 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCSE-EEEEESCHHHHHHHHH
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCce-EEEEcCCHHHHHhhhc
Confidence            445566788999888864 56666776655545 9999999987777653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.67  E-value=0.67  Score=25.66  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=24.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHH-HcC-CcEEEEEecChh
Q psy16556         59 SVLVLSA-GPIGLVTILAAK-AYG-ARVICVCKYVGI   92 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~-~~g-~~~v~~~~~~~~   92 (100)
                      +|.|+|+ |.+|..++.+.. ..+ .+++...|..+.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~   38 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV   38 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence            6889996 999987776543 444 455888876543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.62  E-value=0.16  Score=30.51  Aligned_cols=30  Identities=13%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecC
Q psy16556         59 SVLVLSA-GPIGLVTILAAKAYGARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~   90 (100)
                      +|||.|+ |.+|..++..+...|.  ++.++.+
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~   32 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVH   32 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE--EEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC--EEEEECC
Confidence            6999998 9999999887776663  4555443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.60  E-value=0.58  Score=29.28  Aligned_cols=44  Identities=25%  Similarity=0.120  Sum_probs=31.9

Q ss_pred             cCCCCCCEEEEEcC--CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         52 SGVGLGTSVLVLSA--GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        52 ~~~~~g~~vli~G~--G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+++|++||=.++  |+.+.   .++ ..|++.|+.+|.+++..+.+++
T Consensus       141 ~~~~~g~~VLDl~~g~G~~si---~~a-~~ga~~V~~vD~s~~al~~a~~  186 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYTGGFAI---HAA-IAGADEVIGIDKSPRAIETAKE  186 (324)
T ss_dssp             GGCCTTCEEEETTCTTTHHHH---HHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             hhcCCCCeeecccCcccchhh---hhh-hcCCcEEEeecCCHHHHHHHHH
Confidence            34678999987765  45444   333 3477779999999999888764

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=0.77  Score=24.79  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +.+..+|+|.|- |..|....+..+.+|-+ |++-
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~-vVaG   36 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGG   36 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCc-eEEE
Confidence            457789999998 99999999999999998 5543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=87.08  E-value=0.54  Score=28.62  Aligned_cols=47  Identities=4%  Similarity=-0.050  Sum_probs=35.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-cEEEEEecChhhhhhhhc
Q psy16556         52 SGVGLGTSVLVLSAGPIGLVTILAAKAYGA-RVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        52 ~~~~~g~~vli~G~G~~G~~~~~l~~~~g~-~~v~~~~~~~~~~~~~~~   99 (100)
                      .++.++.+||=+|+|. |..+..+++..+. .+|+++|.+++-.+.+++
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~   70 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARE   70 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHH
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhc
Confidence            3677888999999874 6777788877542 249999999887776653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.04  E-value=1.4  Score=24.22  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=25.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEec
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYGA-RVICVCKY   89 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g~-~~v~~~~~   89 (100)
                      .+|.|+|+ |.+|..++..+...+. ++++..|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            37899995 9999998888888764 45777774

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=87.00  E-value=0.33  Score=27.42  Aligned_cols=35  Identities=9%  Similarity=0.059  Sum_probs=24.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCcEEEEEecChhh
Q psy16556         59 SVLVLSAGPIGLVTILAAKAY-GARVICVCKYVGIR   93 (100)
Q Consensus        59 ~vli~G~G~~G~~~~~l~~~~-g~~~v~~~~~~~~~   93 (100)
                      +|.|+|.|.+|...+...+.. +++-+-+.++++++
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~   40 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL   40 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence            689999999999888877764 56633344445443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.83  E-value=0.36  Score=30.40  Aligned_cols=44  Identities=18%  Similarity=0.102  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      +..++|||+|+|.- ..+-.+++.....+|..++-+++=.+.+++
T Consensus       105 ~~pk~VLIiGgG~G-~~~rellk~~~v~~v~~VEID~~Vv~~a~~  148 (312)
T d2b2ca1         105 PDPKRVLIIGGGDG-GILREVLKHESVEKVTMCEIDEMVIDVAKK  148 (312)
T ss_dssp             SSCCEEEEESCTTS-HHHHHHTTCTTCCEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEeCCCch-HHHHHHHHcCCcceEEEEcccHHHHHHHHh
Confidence            45678999987542 234466666676679999999887776654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.39  Score=28.80  Aligned_cols=37  Identities=14%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHH--HH---HHHcCCcEEEEEecChh
Q psy16556         55 GLGTSVLVLSA-GPIGLVTI--LA---AKAYGARVICVCKYVGI   92 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~--~l---~~~~g~~~v~~~~~~~~   92 (100)
                      +++.+|+|+.+ |++|..++  .+   +...|.+ |.++|.++.
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~r-VllvD~Dp~   59 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFD-VHLTTSDPA   59 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEESCCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            67889999977 88886542  22   2235877 999988764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.12  E-value=1.3  Score=24.34  Aligned_cols=41  Identities=17%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcC--CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSA--GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~--G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      -.|.+||=.++  |.+|+.+    ...|+++|+.++.+++-.+.+++
T Consensus        13 ~~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~   55 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQD   55 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHH
T ss_pred             CCCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhh
Confidence            46888887754  6666532    34788889999999888776553

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.07  E-value=2.3  Score=25.70  Aligned_cols=50  Identities=20%  Similarity=0.112  Sum_probs=35.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEec--Chhhhhhh
Q psy16556         48 ACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKY--VGIRIFPY   97 (100)
Q Consensus        48 ~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~--~~~~~~~~   97 (100)
                      +.+...++++..++..++|..|.++...++.+|.+.++++..  ++.+.+.+
T Consensus        52 a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~  103 (302)
T d1fcja_          52 AEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLL  103 (302)
T ss_dssp             HHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHH
T ss_pred             HHHcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHH
Confidence            445567788888777778999999999999999984444432  33444443

>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Leishmania donovani [TaxId: 5661]

Probab=85.78  E-value=0.92  Score=27.28  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=26.6

Q ss_pred             CCCCCEEEEE----cCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         54 VGLGTSVLVL----SAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        54 ~~~g~~vli~----G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      +.+|++|+|+    ..|+.-..++++.+..|++ |+.
T Consensus       135 l~~g~rVlIVDDviaTGgT~~aa~~ll~~~Ga~-Vvg  170 (236)
T d1qb7a_         135 IGKGSRVVLIDDVLATGGTALSGLQLVEASDAV-VVE  170 (236)
T ss_dssp             SCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCE-EEE
T ss_pred             ccCCceEEEehhhhhccHHHHHHHHHHHHCCCE-EEE
Confidence            5679999988    3489999999999999998 433

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.74  E-value=0.53  Score=29.40  Aligned_cols=47  Identities=21%  Similarity=0.034  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEEcCCHHHHHHHHHHHHc----CC------cEEEEEec
Q psy16556         43 AVGVHACKRSG-VGLGTSVLVLSAGPIGLVTILAAKAY----GA------RVICVCKY   89 (100)
Q Consensus        43 ~ta~~~~~~~~-~~~g~~vli~G~G~~G~~~~~l~~~~----g~------~~v~~~~~   89 (100)
                      +.-.++++..+ --...++++.|+|..|..+..++...    |.      ++++.+|+
T Consensus        10 AglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~   67 (294)
T d1pj3a1          10 AGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDK   67 (294)
T ss_dssp             HHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeC
Confidence            33345554433 23467899999998887776665543    32      35888875

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.71  Score=25.62  Aligned_cols=38  Identities=13%  Similarity=0.044  Sum_probs=25.4

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCcEEEEEecChhhhhh
Q psy16556         59 SVLVLSAGPIGLV-TILAAKAY-GARVICVCKYVGIRIFP   96 (100)
Q Consensus        59 ~vli~G~G~~G~~-~~~l~~~~-g~~~v~~~~~~~~~~~~   96 (100)
                      ++.|+|+|.+|.- .+...+.. +.+.+.+.++++++.+.
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~   42 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP   42 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhh
Confidence            5889999999864 56666654 66634455666666544

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.57  E-value=2.6  Score=25.96  Aligned_cols=49  Identities=24%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             HhcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCcEEEEEe--cChhhhhhhh
Q psy16556         50 KRSGVGLGTSVLVL-SAGPIGLVTILAAKAYGARVICVCK--YVGIRIFPYK   98 (100)
Q Consensus        50 ~~~~~~~g~~vli~-G~G~~G~~~~~l~~~~g~~~v~~~~--~~~~~~~~~~   98 (100)
                      +...++.+...+|. .+|..|.++...++.+|.+.++++.  .++.|++.++
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~  108 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILL  108 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHH
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhh
Confidence            44556666555555 5599999999999999998444442  2445555544

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.40  E-value=0.74  Score=25.57  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC
Q psy16556         57 GTSVLVLSA-GPIGLVTILAAKAYG   80 (100)
Q Consensus        57 g~~vli~G~-G~~G~~~~~l~~~~g   80 (100)
                      |-+|.|+|+ |-+|.-+++++....
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~   25 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEEST   25 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCC
Confidence            457999999 999999999998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=84.75  E-value=1.2  Score=25.11  Aligned_cols=42  Identities=19%  Similarity=0.052  Sum_probs=30.5

Q ss_pred             CCCCCCEEEEEcC--CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         53 GVGLGTSVLVLSA--GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        53 ~~~~g~~vli~G~--G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+..|.+||=.++  |.+|+   . +...|++ ++.+|.+++..+.+++
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i---~-a~~~ga~-vv~vD~~~~a~~~~~~   81 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGL---E-AASEGWE-AVLVEKDPEAVRLLKE   81 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHH---H-HHHTTCE-EEEECCCHHHHHHHHH
T ss_pred             cccCCCeEEEeccccchhhh---h-hhhccch-hhhcccCHHHHhhhhH
Confidence            5678889887765  56554   3 3346887 8899999998887764

>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.61  E-value=1.5  Score=25.01  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEE----cCCHHHHHHHHHHHHcCCcEEEE
Q psy16556         53 GVGLGTSVLVL----SAGPIGLVTILAAKAYGARVICV   86 (100)
Q Consensus        53 ~~~~g~~vli~----G~G~~G~~~~~l~~~~g~~~v~~   86 (100)
                      .+.+|++|+|+    ..|+.-..++++.+..|++ |+.
T Consensus       118 ~l~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~-vvg  154 (178)
T d1g2qa_         118 AIPAGSNVIIVDDIIATGGSAAAAGELVEQLEAN-LLE  154 (178)
T ss_dssp             SSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCE-EEE
T ss_pred             cccCCCEEEEEehHhhhChHHHHHHHHHHHcCCE-EEE
Confidence            36688999988    3499999999999999998 443

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.55  E-value=0.38  Score=26.87  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=29.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEecChhhhhhh
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKYVGIRIFPY   97 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~   97 (100)
                      +|+++.|++. |+.|.+++..+...|.+ +  ..-+++-.+.+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~-l--~~l~~~t~~~L   41 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLK-L--ATLEEKTIEEL   41 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCE-E--CCCCHHHHHHH
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCc-c--CCCCHHHHHHH
Confidence            5899999987 89999999999999976 3  22344444443

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.53  E-value=1.5  Score=23.63  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         54 VGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        54 ~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      +.++.+|+|.|- |..|....+..+.+|-+ |++-
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~-iVaG   37 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTK-IVAG   37 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCc-eEee
Confidence            456789999998 99999999999999988 5544

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.40  E-value=1.5  Score=23.94  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q psy16556         53 GVGLGTSVLVLSA-GPIGLVTILAAKAYGARVICVC   87 (100)
Q Consensus        53 ~~~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~   87 (100)
                      -+.++.+|+|.|- |..|....+..+.+|-+ |++-
T Consensus        11 li~k~TrVivQGiTG~~G~~ht~~m~~YGT~-iVaG   45 (130)
T d1euca1          11 YVDKNTKVICQGFTGKQGTFHSQQALEYGTN-LVGG   45 (130)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             EEcCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEe
Confidence            4677899999998 99999999999999988 5544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=83.38  E-value=1.6  Score=27.15  Aligned_cols=44  Identities=18%  Similarity=0.106  Sum_probs=32.5

Q ss_pred             cCCCCCCEEEEEcC--CHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         52 SGVGLGTSVLVLSA--GPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        52 ~~~~~g~~vli~G~--G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ..+.+|++||=..+  |+.++.    +...|++.|+.+|.++...+.+++
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~  185 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLA  185 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHH
Confidence            45678999997754  666543    334688779999999998887764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.27  E-value=1.1  Score=24.30  Aligned_cols=38  Identities=11%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecCh
Q psy16556         53 GVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVG   91 (100)
Q Consensus        53 ~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~   91 (100)
                      ++-.|+.|+|+|+|..+.-.+..+...-.+ |+.+.+.+
T Consensus        30 ~~frgk~V~VvGgGdsA~e~A~~L~~~a~~-V~li~r~~   67 (130)
T d1vdca2          30 PIFRNKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRD   67 (130)
T ss_dssp             GGGTTSEEEEECCSHHHHHHHHHHTTTSSE-EEEECSSS
T ss_pred             HHhCCCEEEEEcCchHHHHHHHHHhCCCCc-EEEEEecc
Confidence            567899999999986654444333333344 88886543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=83.21  E-value=0.44  Score=29.83  Aligned_cols=42  Identities=14%  Similarity=0.029  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         55 GLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        55 ~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      .+|++||=.++|+ |...+.+++  |+..|+.+|.+++..+.+++
T Consensus       144 ~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~  185 (318)
T d1wxxa2         144 FRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEE  185 (318)
T ss_dssp             CCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHH
T ss_pred             hCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHH
Confidence            4689999887643 222344553  34459999999999888764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=1.8  Score=23.88  Aligned_cols=32  Identities=16%  Similarity=0.058  Sum_probs=22.0

Q ss_pred             EEEEEcC-CHHHHHHHHH-HHHc--CCcEEEEEecC
Q psy16556         59 SVLVLSA-GPIGLVTILA-AKAY--GARVICVCKYV   90 (100)
Q Consensus        59 ~vli~G~-G~~G~~~~~l-~~~~--g~~~v~~~~~~   90 (100)
                      +|.|+|+ |.+|+-.+++ +.+.  -..+++...++
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss   38 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc
Confidence            6899999 9999999974 4432  33336555544

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.45  E-value=1.4  Score=27.29  Aligned_cols=44  Identities=20%  Similarity=0.088  Sum_probs=29.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEe
Q psy16556         45 GVHACKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCK   88 (100)
Q Consensus        45 a~~~~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~   88 (100)
                      +++.+....-...+.++...+|..|.++..+++..|.+.++++.
T Consensus        65 a~~~i~~a~~~g~~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p  108 (351)
T d1v7ca_          65 MTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLP  108 (351)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHHhcCCCeeeeeccccHHHHHHHHHhhhcccceeecC
Confidence            44444333223356666666699999999999999998555554

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=82.32  E-value=0.62  Score=27.42  Aligned_cols=39  Identities=8%  Similarity=-0.001  Sum_probs=25.3

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHH-cCCcEEEEEecChhhhhh
Q psy16556         58 TSVLVLSAGPIGL-VTILAAKA-YGARVICVCKYVGIRIFP   96 (100)
Q Consensus        58 ~~vli~G~G~~G~-~~~~l~~~-~g~~~v~~~~~~~~~~~~   96 (100)
                      =+|.|+|+|.+|. ..+...+. -+.+.+-++++++++.+.
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~   74 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKI   74 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHH
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHH
Confidence            3688999999986 34444444 367633456777777654

>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.24  E-value=1.1  Score=24.13  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=19.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHH
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKA   78 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~   78 (100)
                      .++|+.||+.|+|.+...+=.++..
T Consensus       127 ~~~gDiil~mGaGdi~~i~~~l~e~  151 (152)
T d1p3da2         127 IQDGDLILAQGAGSVSKISRGLAES  151 (152)
T ss_dssp             CCTTCEEEEECSSTHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHhc
Confidence            5789999999999888776665543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.21  E-value=2.9  Score=23.73  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=27.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         55 GLGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        55 ~~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      -.|++++|+|. .-+|.=+..++...|++ |..+..
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaT-Vt~~~~   61 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGAT-VYSVDV   61 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCE-EEEECS
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCE-EEEecc
Confidence            46899999998 57899888888889998 766643

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=82.17  E-value=1.9  Score=25.74  Aligned_cols=23  Identities=13%  Similarity=-0.025  Sum_probs=20.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC
Q psy16556         58 TSVLVLSAGPIGLVTILAAKAYG   80 (100)
Q Consensus        58 ~~vli~G~G~~G~~~~~l~~~~g   80 (100)
                      ++|.|+|-|.-|.+-.+-+|..|
T Consensus        45 KkIaViGYGsQG~AhAlNLrDSG   67 (226)
T d1qmga2          45 KQIGVIGWGSQAPAQAQNLKDSL   67 (226)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEeccHHHHHHHhChhhc
Confidence            89999999999999999999844

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.99  E-value=0.66  Score=28.43  Aligned_cols=44  Identities=16%  Similarity=0.061  Sum_probs=28.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhhc
Q psy16556         54 VGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYKK   99 (100)
Q Consensus        54 ~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~   99 (100)
                      ....++|||+|+|.=+ .+-++++. +.++|.+++.+++=.+.+++
T Consensus        70 ~~~p~~vLiiG~G~G~-~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~  113 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGG-TVREVLQH-DVDEVIMVEIDEDVIMVSKD  113 (276)
T ss_dssp             SSCCCEEEEEECTTSH-HHHHHTTS-CCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCceEEEecCCchH-HHHHHHHh-CCceEEEecCCHHHHHHHHH
Confidence            3556899999875322 22334443 44569999999887776653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.66  E-value=1.3  Score=27.18  Aligned_cols=47  Identities=13%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCcEEEEEecChhhhhhhh
Q psy16556         49 CKRSGVGLGTSVLVLSAGPIGLVTILAAKAYGARVICVCKYVGIRIFPYK   98 (100)
Q Consensus        49 ~~~~~~~~g~~vli~G~G~~G~~~~~l~~~~g~~~v~~~~~~~~~~~~~~   98 (100)
                      ++...+.+++.|+=+|.|. |.++-.+++. +.+ |++++.+++=.+.++
T Consensus        14 v~~~~~~~~d~VlEIGPG~-G~LT~~Ll~~-~~~-v~aiE~D~~l~~~L~   60 (278)
T d1zq9a1          14 IDKAALRPTDVVLEVGPGT-GNMTVKLLEK-AKK-VVACELDPRLVAELH   60 (278)
T ss_dssp             HHHTCCCTTCEEEEECCTT-STTHHHHHHH-SSE-EEEEESCHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCc-hHHHHHHHhc-CCc-EEEEEEccchhHHHH
Confidence            3667889999999998753 4445556655 555 999998877555443

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.35  E-value=2.3  Score=23.65  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=28.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCcEEEEEec
Q psy16556         56 LGTSVLVLSA-GPIGLVTILAAKAYGARVICVCKY   89 (100)
Q Consensus        56 ~g~~vli~G~-G~~G~~~~~l~~~~g~~~v~~~~~   89 (100)
                      .|.+|+++|. ..+....+.++..+|++ +..+.+
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~~-v~~~~P   36 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGAD-VVVATP   36 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCe-EEEecc
Confidence            4789999998 68999999999999998 776644

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.28  E-value=1.9  Score=24.20  Aligned_cols=35  Identities=9%  Similarity=0.044  Sum_probs=23.4

Q ss_pred             EEEEEcCCHH--HHHHHHHHHHcC---CcEEEEEecChhh
Q psy16556         59 SVLVLSAGPI--GLVTILAAKAYG---ARVICVCKYVGIR   93 (100)
Q Consensus        59 ~vli~G~G~~--G~~~~~l~~~~g---~~~v~~~~~~~~~   93 (100)
                      +|.|+|+|.+  +.....+++...   ...++..|.++++
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~   42 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK   42 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH
Confidence            5889998754  455556665542   3458889887765

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=80.41  E-value=1.5  Score=27.39  Aligned_cols=29  Identities=17%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             EEEEcCCHHHHH-HHHHHHHcCCcEEEEEecC
Q psy16556         60 VLVLSAGPIGLV-TILAAKAYGARVICVCKYV   90 (100)
Q Consensus        60 vli~G~G~~G~~-~~~l~~~~g~~~v~~~~~~   90 (100)
                      ++|+|+|..|.. +.+|++ .|.+ |.+++.-
T Consensus         5 ~IIVGsG~aG~v~A~rLae-~g~~-VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSE-AGKK-VLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCC-EEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhh-CCCe-EEEEEcc
Confidence            689999999975 556665 5877 9998764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=80.16  E-value=1.9  Score=24.16  Aligned_cols=39  Identities=13%  Similarity=0.043  Sum_probs=25.7

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHcCCc-EEE-EEecChhhhhhh
Q psy16556         59 SVLVLSAGPIGLV-TILAAKAYGAR-VIC-VCKYVGIRIFPY   97 (100)
Q Consensus        59 ~vli~G~G~~G~~-~~~l~~~~g~~-~v~-~~~~~~~~~~~~   97 (100)
                      ++.|+|+|..|.- .+...+..+-. +++ +.++++++.+.+
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~   46 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEF   46 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhh
Confidence            6889999999864 56666665432 255 456777766543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.04  E-value=1.4  Score=25.06  Aligned_cols=30  Identities=27%  Similarity=0.207  Sum_probs=22.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEe
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAY-GARVICVCK   88 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~-g~~~v~~~~   88 (100)
                      =+|.|+|+ |-+|+-+++++... ..+ +..+.
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~e-i~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFR-IKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEE-EEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCce-EEEEe
Confidence            36889999 99999999998875 344 55443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.01  E-value=2.2  Score=23.30  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC---CcEEEEEecC
Q psy16556         58 TSVLVLSA-GPIGLVTILAAKAYG---ARVICVCKYV   90 (100)
Q Consensus        58 ~~vli~G~-G~~G~~~~~l~~~~g---~~~v~~~~~~   90 (100)
                      -+|.|+|+ |-+|+-+++++...+   .+ +..+.++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~-l~~~~s~   38 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHR-LHLLASA   38 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSC-EEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceE-EEEEeec
Confidence            36899999 999999999986443   34 6555443