Psyllid ID: psy16631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
cccccccccccEEEEcccccEEEcccccccccEEccccccccccccccccccccccccccHHHHccccEEEcccccccccccHHHHHHHHHHHccccccccccccccEEEccccccccHHHHHHHHHHHHccccccEEEEcHHHHHHHcccccEEEEEEcccccEEEccccccccccccEEEEccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEcccccccccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEcccccccccHHHHHHHHHHHcccccccEEEEcccccccEEEEHHHHHccccccccccEEcccccccccccEEcccc
ccccccccccEEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccEEcHHHHHccccEEEEccEEccEEccHHHHHHHHHHHHHcccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
mepydvivnqpvvidngsgvikagfagdqvpkccfpnyigrpkHIRVMAGAlegdifvgpkaeehrgllsihypmehgiitdwNDMERIWQYVYSndqlqtfseehpvllteaplnprrnREKAAEIFFESFNVPALYVSMQAVLSLYATGrttgvvldsgdgvthavpiyegfamphsimrndiagRDVTRYLKLLLRKegvnfrttAEFEIVRTIKEKAcylssnpvkeettdsekhtyvlpdgssldigharfrapevlfrpdligeeseGIHDVLYYAIQKSDLDLRKVLYQNIVLsggstlfkgFGDRLLAEIRKNAPKDlkirisapqerlysTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLlrkegvnfrttaeFEIVRTIkekacylssnpvkeettdsekhtyvlpdgssldiGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKnapkdlkirisapqerlystwiggsilasldTFKRMWVskrefdedgkraihrktf
MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
***YDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLT************AAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLS***************YVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSK****************
*****VIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRV**GALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPV*************LPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSN***********HTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
*******VNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
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MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
P85515376 Alpha-centractin OS=Rattu yes N/A 1.0 1.0 0.827 0.0
P61164376 Alpha-centractin OS=Mus m yes N/A 1.0 1.0 0.827 0.0
Q4R6J9376 Alpha-centractin OS=Macac N/A N/A 1.0 1.0 0.827 0.0
P61163376 Alpha-centractin OS=Homo yes N/A 1.0 1.0 0.827 0.0
P61162376 Alpha-centractin OS=Canis yes N/A 1.0 1.0 0.827 0.0
P42025376 Beta-centractin OS=Homo s no N/A 1.0 1.0 0.819 0.0
Q8R5C5376 Beta-centractin OS=Mus mu no N/A 1.0 1.0 0.819 0.0
P45889376 Actin-like protein 87C OS yes N/A 1.0 1.0 0.824 0.0
A4IFE3376 Beta-centractin OS=Bos ta no N/A 1.0 1.0 0.813 0.0
P42023385 Actin-2 OS=Pneumocystis c N/A N/A 0.992 0.968 0.658 1e-146
>sp|P85515|ACTZ_RAT Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE=1 SV=1 Back     alignment and function desciption
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/376 (82%), Positives = 353/376 (93%)

Query: 1   MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGP 60
           ME YDVI NQPVVIDNGSGVIKAGFAGDQ+PK CFPNY+GRPKH+RVMAGALEGDIF+GP
Sbjct: 1   MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP 60

Query: 61  KAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRN 120
           KAEEHRGLLSI YPMEHGI+ DWNDMERIWQYVYS DQLQTFSEEHPVLLTEAPLNPR+N
Sbjct: 61  KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN 120

Query: 121 REKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI 180
           RE+AAE+FFE+FNVPAL++SMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
Sbjct: 121 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI 180

Query: 181 MRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHT 240
           MR DIAGRDV+R+L+L LRKEG +F +++EFEIV+ IKE+ACYLS NP K+ET ++EK  
Sbjct: 181 MRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQ 240

Query: 241 YVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVL 300
           Y LPDGS+++IG +RFRAPE+LFRPDLIGEESEGIH+VL +AIQKSD+DLR+ L+ NIVL
Sbjct: 241 YYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVL 300

Query: 301 SGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSK 360
           SGGSTLFKGFGDRLL+E++K APKD+KIRISAPQERLYSTWIGGSILASLDTFK+MWVSK
Sbjct: 301 SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK 360

Query: 361 REFDEDGKRAIHRKTF 376
           +E++EDG R+IHRKTF
Sbjct: 361 KEYEEDGARSIHRKTF 376
Component of a multi-subunit complex involved in microtubule based vesicle motility. It is associated with the centrosome.
Rattus norvegicus (taxid: 10116)
>sp|P61164|ACTZ_MOUSE Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV=1 Back     alignment and function description
>sp|Q4R6J9|ACTZ_MACFA Alpha-centractin OS=Macaca fascicularis GN=ACTR1A PE=2 SV=1 Back     alignment and function description
>sp|P61163|ACTZ_HUMAN Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV=1 Back     alignment and function description
>sp|P61162|ACTZ_CANFA Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=2 SV=1 Back     alignment and function description
>sp|P42025|ACTY_HUMAN Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1 Back     alignment and function description
>sp|Q8R5C5|ACTY_MOUSE Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=1 Back     alignment and function description
>sp|P45889|ACTZ_DROME Actin-like protein 87C OS=Drosophila melanogaster GN=Arp87C PE=2 SV=2 Back     alignment and function description
>sp|A4IFE3|ACTY_BOVIN Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1 Back     alignment and function description
>sp|P42023|ACTZ_PNECA Actin-2 OS=Pneumocystis carinii PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
307184407376 Actin-like protein 87C [Camponotus flori 1.0 1.0 0.877 0.0
66547891376 PREDICTED: actin-like protein 87C-like [ 1.0 1.0 0.875 0.0
340725922376 PREDICTED: actin-like protein 87C-like [ 1.0 1.0 0.872 0.0
307195892376 Actin-like protein 87C [Harpegnathos sal 1.0 1.0 0.872 0.0
383847967376 PREDICTED: actin-like protein 87C-like [ 1.0 1.0 0.859 0.0
225713588376 Beta-centractin [Lepeophtheirus salmonis 1.0 1.0 0.859 0.0
260826410376 hypothetical protein BRAFLDRAFT_125875 [ 1.0 1.0 0.843 0.0
242021533376 alpha-centractin, putative [Pediculus hu 1.0 1.0 0.848 0.0
56118984376 alpha-centractin [Gallus gallus] gi|5312 1.0 1.0 0.835 0.0
194742343376 GF17116 [Drosophila ananassae] gi|190626 1.0 1.0 0.837 0.0
>gi|307184407|gb|EFN70816.1| Actin-like protein 87C [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/376 (87%), Positives = 358/376 (95%)

Query: 1   MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGP 60
           MEPYDVIVNQPVVIDNGSGVIKAGFAGDQ+PKC FPNYIGRPKH+RVMAGALEGD+FVGP
Sbjct: 1   MEPYDVIVNQPVVIDNGSGVIKAGFAGDQIPKCRFPNYIGRPKHVRVMAGALEGDLFVGP 60

Query: 61  KAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRN 120
            AEEHRGLLS+ YPMEHGI+TDWNDMERIW YVYS DQL TFSEEHPVLLTEAPLNPR+N
Sbjct: 61  IAEEHRGLLSLRYPMEHGIVTDWNDMERIWSYVYSKDQLATFSEEHPVLLTEAPLNPRKN 120

Query: 121 REKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI 180
           REKAAEIFFE+FNVPAL+VSMQAVLSLYATGRTTGVVLD+GDGVTHAVPIYEGFAMPHSI
Sbjct: 121 REKAAEIFFETFNVPALFVSMQAVLSLYATGRTTGVVLDAGDGVTHAVPIYEGFAMPHSI 180

Query: 181 MRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHT 240
           MR DIAGRDVTR+L+LLLRKEG+NF+TTAEFEIVR IKE+ACYL+SNP KEET ++EK  
Sbjct: 181 MRVDIAGRDVTRHLRLLLRKEGINFKTTAEFEIVRIIKERACYLASNPQKEETIETEKFQ 240

Query: 241 YVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVL 300
           YVLPDGS L+IG ARFRAPEVLFRPDLIGEE EG+H+VL Y+IQKSDLDLRKVL+QNIVL
Sbjct: 241 YVLPDGSHLEIGPARFRAPEVLFRPDLIGEECEGLHEVLTYSIQKSDLDLRKVLFQNIVL 300

Query: 301 SGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSK 360
           SGGSTLF+GFGDRLL+EIR+ +PKD+KIRISAPQERLYSTWIGGSILASLDTFK+MWVSK
Sbjct: 301 SGGSTLFRGFGDRLLSEIRRMSPKDIKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK 360

Query: 361 REFDEDGKRAIHRKTF 376
           REFDEDG RAIHRKTF
Sbjct: 361 REFDEDGIRAIHRKTF 376

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66547891|ref|XP_623834.1| PREDICTED: actin-like protein 87C-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340725922|ref|XP_003401313.1| PREDICTED: actin-like protein 87C-like [Bombus terrestris] gi|350397352|ref|XP_003484853.1| PREDICTED: actin-like protein 87C-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307195892|gb|EFN77671.1| Actin-like protein 87C [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383847967|ref|XP_003699624.1| PREDICTED: actin-like protein 87C-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|225713588|gb|ACO12640.1| Beta-centractin [Lepeophtheirus salmonis] Back     alignment and taxonomy information
>gi|260826410|ref|XP_002608158.1| hypothetical protein BRAFLDRAFT_125875 [Branchiostoma floridae] gi|229293509|gb|EEN64168.1| hypothetical protein BRAFLDRAFT_125875 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|242021533|ref|XP_002431199.1| alpha-centractin, putative [Pediculus humanus corporis] gi|212516448|gb|EEB18461.1| alpha-centractin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|56118984|ref|NP_001007949.1| alpha-centractin [Gallus gallus] gi|53127712|emb|CAG31185.1| hypothetical protein RCJMB04_3a24 [Gallus gallus] Back     alignment and taxonomy information
>gi|194742343|ref|XP_001953662.1| GF17116 [Drosophila ananassae] gi|190626699|gb|EDV42223.1| GF17116 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
UNIPROTKB|Q5ZM58376 ACTR1A "Uncharacterized protei 1.0 1.0 0.835 2e-175
UNIPROTKB|E2RHX6376 ACTR1B "Uncharacterized protei 1.0 1.0 0.821 3.7e-174
UNIPROTKB|P42025376 ACTR1B "Beta-centractin" [Homo 1.0 1.0 0.819 3.7e-174
UNIPROTKB|F2Z4F0376 ACTR1B "Beta-centractin" [Bos 1.0 1.0 0.827 4.7e-174
UNIPROTKB|P61162376 ACTR1A "Alpha-centractin" [Can 1.0 1.0 0.827 4.7e-174
UNIPROTKB|P61163376 ACTR1A "Alpha-centractin" [Hom 1.0 1.0 0.827 4.7e-174
UNIPROTKB|F2Z5G5376 ACTR1A "Uncharacterized protei 1.0 1.0 0.827 4.7e-174
MGI|MGI:1858964376 Actr1a "ARP1 actin-related pro 1.0 1.0 0.827 4.7e-174
MGI|MGI:1917446376 Actr1b "ARP1 actin-related pro 1.0 1.0 0.819 4.7e-174
RGD|1307025376 Actr1a "ARP1 actin-related pro 1.0 1.0 0.827 4.7e-174
UNIPROTKB|Q5ZM58 ACTR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
 Identities = 314/376 (83%), Positives = 353/376 (93%)

Query:     1 MEPYDVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGP 60
             ME YDVI NQPVVIDNGSGVIKAGFAGDQ+PK CFPNY+GRPKH+RVMAGALEGDIF+GP
Sbjct:     1 MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGP 60

Query:    61 KAEEHRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRN 120
             KAEEHRGLLSI YPMEHGI+ DWNDMERIWQYVYS DQLQTFSEEHPVLLTEAPLNPR+N
Sbjct:    61 KAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKN 120

Query:   121 REKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI 180
             RE+AAE+FFE+FNVPAL++SMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI
Sbjct:   121 RERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSI 180

Query:   181 MRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHT 240
             MR DIAGRDV+R+L+L LRKEG +F TT+EFEIV+TIKE+ACYLS NP K+ET ++EK  
Sbjct:   181 MRIDIAGRDVSRFLRLYLRKEGYDFHTTSEFEIVKTIKERACYLSINPQKDETLETEKAQ 240

Query:   241 YVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVL 300
             Y LPDGS+++IG ARFRAPE+LFRPDLIGEE EG+H+VL +AIQKSD+DLR+ L+ NIVL
Sbjct:   241 YYLPDGSTIEIGSARFRAPELLFRPDLIGEECEGLHEVLVFAIQKSDMDLRRTLFSNIVL 300

Query:   301 SGGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSK 360
             SGGSTLFKGFGDRLL+E++K APKD+KIRISAPQERLYSTWIGGSILASLDTFK+MWVSK
Sbjct:   301 SGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSK 360

Query:   361 REFDEDGKRAIHRKTF 376
             +E++EDG RAIHRKTF
Sbjct:   361 KEYEEDGARAIHRKTF 376
GO:0005524 "ATP binding" evidence=IEA
GO:0005813 "centrosome" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISS
UNIPROTKB|E2RHX6 ACTR1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P42025 ACTR1B "Beta-centractin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4F0 ACTR1B "Beta-centractin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61162 ACTR1A "Alpha-centractin" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P61163 ACTR1A "Alpha-centractin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5G5 ACTR1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1858964 Actr1a "ARP1 actin-related protein 1A, centractin alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1917446 Actr1b "ARP1 actin-related protein 1B, centractin beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307025 Actr1a "ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O17320ACT_CRAGINo assigned EC number0.57180.96800.9680N/AN/A
P92179ACTC_BIOGLNo assigned EC number0.57180.96800.9680N/AN/A
Q4R6J9ACTZ_MACFANo assigned EC number0.82711.01.0N/AN/A
P85515ACTZ_RATNo assigned EC number0.82711.01.0yesN/A
P0CJ46ACT1_ARATHNo assigned EC number0.56060.97340.9708yesN/A
P61164ACTZ_MOUSENo assigned EC number0.82711.01.0yesN/A
Q26065ACT_PLAMGNo assigned EC number0.57450.96800.9680N/AN/A
P61162ACTZ_CANFANo assigned EC number0.82711.01.0yesN/A
P61163ACTZ_HUMANNo assigned EC number0.82711.01.0yesN/A
P30163ACT2_ONCVONo assigned EC number0.57180.96800.9680N/AN/A
Q964E1ACTC_BIOOBNo assigned EC number0.57720.96800.9680N/AN/A
Q964E0ACTC_BIOTENo assigned EC number0.57450.96800.9680N/AN/A
Q964E3ACTC_BIOALNo assigned EC number0.57180.96800.9680N/AN/A
Q964E2ACTC_BIOPFNo assigned EC number0.57720.96800.9680N/AN/A
Q2U7A3ACT_ASPORNo assigned EC number0.57990.96800.9706noN/A
Q10DV7ACT1_ORYSJNo assigned EC number0.56330.97340.9708yesN/A
P53480ACTC_TAKRUNo assigned EC number0.57990.96800.9655N/AN/A
P17304ACTM_APLCANo assigned EC number0.57720.96800.9680N/AN/A
P53496ACT11_ARATHNo assigned EC number0.56060.97340.9708yesN/A
P02578ACT1_ACACANo assigned EC number0.57410.97340.976N/AN/A
P0CJ47ACT3_ARATHNo assigned EC number0.56060.97340.9708yesN/A
Q6P640ACTC_XENTRNo assigned EC number0.57990.96800.9655noN/A
P53500ACT_CYAMENo assigned EC number0.58100.96800.9655N/AN/A
P45886ACT3_BACDONo assigned EC number0.57180.96800.9680N/AN/A
P68035ACTC_RATNo assigned EC number0.57990.96800.9655noN/A
P53492ACT7_ARATHNo assigned EC number0.57140.97340.9708yesN/A
P45889ACTZ_DROMENo assigned EC number0.82441.01.0yesN/A
P38673ACTZ_NEUCRNo assigned EC number0.64050.96010.95N/AN/A
A2XLF2ACT1_ORYSINo assigned EC number0.56330.97340.9708N/AN/A
P68556ACT1_DIPDENo assigned EC number0.57140.97340.9734N/AN/A
P68555ACT_TAESONo assigned EC number0.57140.97340.9734N/AN/A
P20904ACT_VOLCANo assigned EC number0.57720.96800.9655N/AN/A
P53471ACT2_SCHMANo assigned EC number0.56870.97340.9734N/AN/A
P53470ACT1_SCHMANo assigned EC number0.57180.96800.9680N/AN/A
P53498ACT_CHLRENo assigned EC number0.57720.96800.9655N/AN/A
P69005ACTD_STRPUNo assigned EC number0.57450.96800.9680noN/A
P69004ACT2_STRFNNo assigned EC number0.57450.96800.9680N/AN/A
P69003ACT1_HELTBNo assigned EC number0.57720.96800.9680N/AN/A
P69002ACT1_HELERNo assigned EC number0.57720.96800.9680N/AN/A
Q964D9ACTC_HELTINo assigned EC number0.57180.96800.9680N/AN/A
Q8R5C5ACTY_MOUSENo assigned EC number0.81911.01.0noN/A
P53472ACTA_STRPUNo assigned EC number0.57450.96800.9680noN/A
Q54I79ACTY_DICDINo assigned EC number0.59250.97340.9556yesN/A
P53457ACT3_DIPDENo assigned EC number0.57720.96800.9655N/AN/A
P10990ACT1_STRFNNo assigned EC number0.57450.96800.9680N/AN/A
P42023ACTZ_PNECANo assigned EC number0.65800.99200.9688N/AN/A
O65314ACT_SCHDUNo assigned EC number0.56360.96800.9629N/AN/A
P42025ACTY_HUMANNo assigned EC number0.81911.01.0noN/A
P10986ACT4_CAEELNo assigned EC number0.57180.96800.9680noN/A
A4IFE3ACTY_BOVINNo assigned EC number0.81381.01.0noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 0.0
smart00268373 smart00268, ACTIN, Actin 0.0
pfam00022367 pfam00022, Actin, Actin 0.0
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 1e-163
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 1e-162
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 1e-122
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-120
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 1e-102
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 1e-17
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information 
 Score =  562 bits (1449), Expect = 0.0
 Identities = 226/375 (60%), Positives = 295/375 (78%), Gaps = 5/375 (1%)

Query: 5   DVIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEE 64
            +  NQP++IDNG+G IKAGFAG+ VP   FP+Y+GRPK+ RVMAGA+EG+IFVG KAEE
Sbjct: 8   QLYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEE 67

Query: 65  HRGLLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKA 124
           +RGLL + YP+ HGII +WNDME IW +VY+   ++  SEEHPVLLTEAPLNP++N+EK 
Sbjct: 68  YRGLLKVTYPINHGIIENWNDMENIWIHVYN--SMKINSEEHPVLLTEAPLNPQKNKEKI 125

Query: 125 AEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRND 184
           AE+FFE+FNVPAL++S+QA+LSLY+ G+T G VLD GDGV H V IYEG+++ ++I R D
Sbjct: 126 AEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTD 185

Query: 185 IAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSEKHT---Y 241
           +AGRD+T YL  LLRK G  F T+AE E+V+ +KE  CY+S N  KE+ +  +  T   Y
Sbjct: 186 VAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY 245

Query: 242 VLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLS 301
           +LPDGS + IG  R+RAPEVLF P ++G E  G+ +++  +I ++D+DLR+ LY +IVLS
Sbjct: 246 ILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLS 305

Query: 302 GGSTLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKR 361
           GG+T+F GFGDRLL EIRK APKD+ IRISAP ER +ST+IGGSILASL TFK++W+SK+
Sbjct: 306 GGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQ 365

Query: 362 EFDEDGKRAIHRKTF 376
           EFDE G   +HRKTF
Sbjct: 366 EFDEYGSVILHRKTF 380

Length = 380
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676|consensus372 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679|consensus426 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
KOG0677|consensus389 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680|consensus400 100.0
KOG0681|consensus645 100.0
KOG0678|consensus415 100.0
KOG0797|consensus618 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 100.0
PRK13928336 rod shape-determining protein Mbl; Provisional 99.97
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.95
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.84
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.8
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.73
CHL00094 621 dnaK heat shock protein 70 99.73
PLN03184 673 chloroplast Hsp70; Provisional 99.72
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.7
PRK01433 595 hscA chaperone protein HscA; Provisional 99.69
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.69
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.69
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.68
PRK13410 668 molecular chaperone DnaK; Provisional 99.68
PRK13411 653 molecular chaperone DnaK; Provisional 99.67
PRK05183 616 hscA chaperone protein HscA; Provisional 99.66
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.63
PRK11678450 putative chaperone; Provisional 99.56
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.53
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.52
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 99.43
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.42
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.24
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 99.22
PRK13917344 plasmid segregation protein ParM; Provisional 99.2
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 99.17
COG4820277 EutJ Ethanolamine utilization protein, possible ch 99.11
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.89
KOG0104|consensus 902 98.83
KOG0101|consensus 620 98.81
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.81
KOG0100|consensus 663 98.73
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 98.52
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 98.46
KOG0103|consensus 727 98.45
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 98.34
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 98.17
KOG0102|consensus 640 98.15
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 98.08
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 97.66
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 97.55
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 97.3
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 96.25
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 95.97
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 95.53
COG4819 473 EutA Ethanolamine utilization protein, possible ch 95.42
PRK13317277 pantothenate kinase; Provisional 95.13
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 95.03
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 95.03
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 94.94
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 94.84
TIGR00744318 ROK_glcA_fam ROK family protein (putative glucokin 94.76
PRK09557301 fructokinase; Reviewed 94.73
COG1548330 Predicted transcriptional regulator/sugar kinase [ 94.66
TIGR00555279 panK_eukar pantothenate kinase, eukaryotic/staphyl 94.06
PRK10854 513 exopolyphosphatase; Provisional 93.44
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 93.17
PRK03011358 butyrate kinase; Provisional 92.6
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 91.58
COG2441374 Predicted butyrate kinase [Energy production and c 91.26
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 90.61
COG1521251 Pantothenate kinase type III (Bvg accessory factor 90.36
PF07318343 DUF1464: Protein of unknown function (DUF1464); In 88.31
PRK13324258 pantothenate kinase; Reviewed 87.97
TIGR02707351 butyr_kinase butyrate kinase. This model represent 87.47
TIGR00671243 baf pantothenate kinase, type III. This model desc 86.97
PF03309206 Pan_kinase: Type III pantothenate kinase; InterPro 84.2
PRK00976326 hypothetical protein; Provisional 80.72
PRK13321256 pantothenate kinase; Reviewed 80.71
PRK13318258 pantothenate kinase; Reviewed 80.21
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-86  Score=628.54  Aligned_cols=367  Identities=45%  Similarity=0.858  Sum_probs=340.5

Q ss_pred             CCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccccccCCCCCCeeeCcchhhccCcceeeccccCCcccCHHHHHH
Q psy16631          9 NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLLSIHYPMEHGIITDWNDMER   88 (376)
Q Consensus         9 ~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~~   88 (376)
                      .++||||+||+++|+||||++.|+.++||+++++++.....+..+.++++|+++...+..+.+++|+++|.|.|||.++.
T Consensus         5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~   84 (375)
T PTZ00452          5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI   84 (375)
T ss_pred             CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence            35899999999999999999999999999999987643222223457889999877777788999999999999999999


Q ss_pred             HHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchhhhhhhhhcCCceEEEEecCCCceEEE
Q psy16631         89 IWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAV  168 (376)
Q Consensus        89 ~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~i~  168 (376)
                      +|+|+|.+ .|+++|+++|++++|++++++..|+++++++||.|++|++++.+++++++|++|++||||||+|++.|+|+
T Consensus        85 iw~~~f~~-~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~  163 (375)
T PTZ00452         85 IWHHAFYN-ELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV  163 (375)
T ss_pred             HHHHHHHh-hcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence            99999986 69999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc----ccCCCCceEEECC
Q psy16631        169 PIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVLP  244 (376)
Q Consensus       169 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~----~~~~~~~~~~~lp  244 (376)
                      ||+||+++.+++.++++||++++++|.++|..+++++....+.+.++++|+++||++.++.++    .......+.|+||
T Consensus       164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP  243 (375)
T PTZ00452        164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP  243 (375)
T ss_pred             EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence            999999999999999999999999999999998887766667789999999999999887654    1123345789999


Q ss_pred             CCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhCCC
Q psy16631        245 DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPK  324 (376)
Q Consensus       245 d~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~~~  324 (376)
                      ||+.|.++.+|+.+||+||+|++++.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||..++|.
T Consensus       244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~  323 (375)
T PTZ00452        244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS  323 (375)
T ss_pred             CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhhhccC
Q psy16631        325 DLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIHRKTF  376 (376)
Q Consensus       325 ~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  376 (376)
                      ..+++|..++++.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus       324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            8899999999999999999999999999999999999999999999999997

>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676|consensus Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679|consensus Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0677|consensus Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680|consensus Back     alignment and domain information
>KOG0681|consensus Back     alignment and domain information
>KOG0678|consensus Back     alignment and domain information
>KOG0797|consensus Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>KOG0104|consensus Back     alignment and domain information
>KOG0101|consensus Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0100|consensus Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0103|consensus Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>KOG0102|consensus Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PRK03011 butyrate kinase; Provisional Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>COG2441 Predicted butyrate kinase [Energy production and conversion] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR02707 butyr_kinase butyrate kinase Back     alignment and domain information
>TIGR00671 baf pantothenate kinase, type III Back     alignment and domain information
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway Back     alignment and domain information
>PRK00976 hypothetical protein; Provisional Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-129
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 1e-128
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 1e-127
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 1e-127
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 1e-127
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 1e-127
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 1e-127
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 1e-127
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 1e-127
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-127
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 1e-126
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 1e-126
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 1e-126
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 1e-126
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 1e-126
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 1e-126
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 1e-126
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 1e-126
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 1e-126
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 1e-125
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 1e-125
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 1e-125
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 1e-125
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 1e-125
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 1e-125
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 1e-125
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 1e-125
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 1e-125
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 1e-124
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 1e-124
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 1e-123
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 1e-123
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 1e-123
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-123
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 1e-122
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-122
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 1e-122
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 1e-121
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 1e-121
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 7e-88
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 1e-87
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 9e-58
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 3e-55
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 3e-19
4i6m_A 477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 5e-13
4i6m_B439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 3e-05
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-04
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 213/371 (57%), Positives = 279/371 (75%), Gaps = 5/371 (1%)
Query: 10  QPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGLL 69
           Q +VIDNGSG+ KAGFAGD  P+  FP+ +GRP+H  VM G  + D +VG +A+  RG+L
Sbjct: 6   QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 70  SIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFF 129
           ++ YP+EHGI+T+W+DME+IW + + N +L+   EEHPVLLTEAPLNP+ NREK  +I F
Sbjct: 66  TLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 130 ESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRD 189
           E+FN PA+YV++QAVLSLYA+GRTTG+VLDSGDGVTH VPIYEG+A+PH+I+R D+AGRD
Sbjct: 125 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 190 VTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKEETTDSE----KHTYVLPD 245
           +T YL  +L + G +F TTAE EIVR IKEK CY++ +  +E  T +     + +Y LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYELPD 244
Query: 246 GSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGST 305
           G  + IG+ RFRAPE LF+P  +G ES GIH+  Y +I K D+D+RK LY N+VLSGG+T
Sbjct: 245 GQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTT 304
Query: 306 LFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDE 365
           +F G  DR+  E+   AP  +KI+I AP ER YS WIGGSILASL TF++MW+SK E+DE
Sbjct: 305 MFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 366 DGKRAIHRKTF 376
            G   +HRK F
Sbjct: 365 SGPSIVHRKCF 375
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 0.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 0.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 0.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 0.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-123
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 2e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  598 bits (1543), Expect = 0.0
 Identities = 211/372 (56%), Positives = 277/372 (74%), Gaps = 5/372 (1%)

Query: 9   NQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIRVMAGALEGDIFVGPKAEEHRGL 68
              +V DNGSG++KAGFAGD  P+  FP+ +GRP+H  VM G  + D +VG +A+  RG+
Sbjct: 5   TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64

Query: 69  LSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIF 128
           L++ YP+EHGIIT+W+DME+IW + + N +L+   EEHP LLTEAPLNP+ NREK  +I 
Sbjct: 65  LTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPTLLTEAPLNPKANREKMTQIM 123

Query: 129 FESFNVPALYVSMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGR 188
           FE+FNVPA+YV++QAVLSLYA+GRTTG+VLDSGDGVTH VPIYEG+A+PH+IMR D+AGR
Sbjct: 124 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 183

Query: 189 DVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVLP 244
           D+T YL  +L + G +F TTAE EIVR IKEK CY++ +   E     ++ S + +Y LP
Sbjct: 184 DLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 243

Query: 245 DGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGS 304
           DG  + IG+ RFR PE LF+P  IG ES GIH+  Y +I K D+D+RK LY N V+SGG+
Sbjct: 244 DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 303

Query: 305 TLFKGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFD 364
           T++ G  DR+  EI   AP  +KI+I AP ER YS WIGGSILASL TF++MW++K+E+D
Sbjct: 304 TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 363

Query: 365 EDGKRAIHRKTF 376
           E G   +HRK F
Sbjct: 364 EAGPSIVHRKCF 375
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.91
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.9
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.9
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.89
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.85
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.8
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.78
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.77
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.73
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.71
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.69
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.69
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.61
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.41
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.34
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.33
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.79
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.77
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 98.13
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 97.43
2qm1_A326 Glucokinase; alpha-beta structure, putative helix- 96.26
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 96.18
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 96.15
3vgl_A321 Glucokinase; ROK family, transferase; HET: BGC ANP 95.9
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 95.8
4db3_A327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 95.74
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 95.1
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 94.81
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 94.49
2ch5_A347 NAGK protein; transferase, N-acetylglucosamine, gl 94.14
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 93.81
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 93.65
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 93.31
4htl_A297 Beta-glucoside kinase; structural genomics, sugar 91.41
2aa4_A289 Mannac kinase, putative N-acetylmannosamine kinase 91.17
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 91.03
3vov_A302 Glucokinase, hexokinase; ROK, sugar kinase, transf 90.69
3djc_A266 Type III pantothenate kinase; structural genomics, 89.97
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 89.23
2hoe_A380 N-acetylglucosamine kinase; TM1224, structural gen 89.13
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 88.86
1zc6_A305 Probable N-acetylglucosamine kinase; NESG, Q7NU07_ 87.44
3zx3_A452 Ectonucleoside triphosphate diphosphohydrolase 1; 85.33
2ap1_A327 Putative regulator protein; zinc binding protein, 84.35
1z05_A429 Transcriptional regulator, ROK family; structural 83.95
2yhw_A343 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N 83.93
1z6r_A406 MLC protein; transcriptional repressor, ROK family 82.66
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=7.6e-84  Score=619.53  Aligned_cols=367  Identities=38%  Similarity=0.670  Sum_probs=316.8

Q ss_pred             CCCCCcEEEeCCCcceEEEEcCCCCCCeeccccceecCccc----------------------cccCCCCCCeeeCcchh
Q psy16631          6 VIVNQPVVIDNGSGVIKAGFAGDQVPKCCFPNYIGRPKHIR----------------------VMAGALEGDIFVGPKAE   63 (376)
Q Consensus         6 ~~~~~~vViD~Gs~~~k~G~a~~~~P~~~~ps~v~~~~~~~----------------------~~~~~~~~~~~~g~~~~   63 (376)
                      .+..++||||+||+++|+||||++.|+++|||+++++++..                      ...+....++++|+++.
T Consensus         2 ~~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~   81 (427)
T 3dwl_A            2 ASFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDAL   81 (427)
T ss_dssp             -CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHH
T ss_pred             CCCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHh
Confidence            45778999999999999999999999999999999987531                      01123445889999997


Q ss_pred             hccC-cceeeccccCCcccCHHHHHHHHHHhhcCccCCCCCCCCcEEEEeCCCCChHhHHHHHHHhhcccCCCceecchh
Q psy16631         64 EHRG-LLSIHYPMEHGIITDWNDMERIWQYVYSNDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFESFNVPALYVSMQ  142 (376)
Q Consensus        64 ~~~~-~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~~l~~~~~~~~vvl~~~~~~~~~~r~~~~~~lfe~~~~~~v~~~~~  142 (376)
                      ..+. .+.+++|+++|.|.|||.++.+|+|+|++ .|++++.++|++|+||+++++..|+++++++||.|++|+++++.+
T Consensus        82 ~~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~-~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~  160 (427)
T 3dwl_A           82 KKASAGYSLDYPIRHGQIENWDHMERFWQQSLFK-YLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQ  160 (427)
T ss_dssp             HTHHHHCCCCCSEETTEECCHHHHHHHHHHHHHT-TSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEH
T ss_pred             hCcccCcEEecCcccCeeccHHHHHHHHHHHHhH-hhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecch
Confidence            7664 67889999999999999999999999986 699999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcC--------CceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHH
Q psy16631        143 AVLSLYATG--------RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIV  214 (376)
Q Consensus       143 ~~~a~~~~g--------~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~  214 (376)
                      +++|+|++|        .+||+|||+|++.|+|+||++|+++.++++++++||++++++|.++|+.+++.   ..+.+.+
T Consensus       161 ~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~  237 (427)
T 3dwl_A          161 AVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTA  237 (427)
T ss_dssp             HHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHH
T ss_pred             HHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHH
Confidence            999999998        68999999999999999999999999999999999999999999999988765   3466899


Q ss_pred             HHHHHhcccccCCcccc-c---cCCCCceEEEC--CCCc--EEEeccccccccccccCCCCCCCC-CCCHHHHHHHHHHh
Q psy16631        215 RTIKEKACYLSSNPVKE-E---TTDSEKHTYVL--PDGS--SLDIGHARFRAPEVLFRPDLIGEE-SEGIHDVLYYAIQK  285 (376)
Q Consensus       215 ~~iK~~~~~~~~~~~~~-~---~~~~~~~~~~l--pd~~--~i~v~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~  285 (376)
                      ++||+++||++.++.++ +   ......+.|++  |||+  .+.++.+||.+||+||+|++++.+ ..+|+++|.++|.+
T Consensus       238 ~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~  317 (427)
T 3dwl_A          238 ERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQS  317 (427)
T ss_dssp             HHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHT
T ss_pred             HHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHh
Confidence            99999999999887654 1   11122456777  8887  889999999999999999999988 48999999999999


Q ss_pred             CCHHHHHHhhcCeEeccCcccccCHHHHHHHHHHhhC--------------CCCceEEEeCCCCCccchhhhHHHhhccc
Q psy16631        286 SDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNA--------------PKDLKIRISAPQERLYSTWIGGSILASLD  351 (376)
Q Consensus       286 ~~~d~r~~l~~nIvl~GG~s~i~Gl~~rl~~eL~~~~--------------~~~~~i~v~~~~~~~~~~w~Gasi~a~l~  351 (376)
                      ||+|+|+.|++|||||||+|++|||.+||++||+.+.              |...+++|..+++|.+++|+||||+|+++
T Consensus       318 c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~  397 (427)
T 3dwl_A          318 SPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTP  397 (427)
T ss_dssp             SCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHST
T ss_pred             CCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecccc
Confidence            9999999999999999999999999999999999886              45678999999999999999999999999


Q ss_pred             cccccceeHHHHhhcCchhhhhccC
Q psy16631        352 TFKRMWVSKREFDEDGKRAIHRKTF  376 (376)
Q Consensus       352 ~~~~~~itk~ey~e~G~~~~~~k~~  376 (376)
                      +|+++||||+||+|+|+++++|||+
T Consensus       398 ~f~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          398 EFGSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             THHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             chhheeEEHHHHhhhChHhheeccc
Confidence            9999999999999999999999984
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Back     alignment and structure
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-88
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 8e-80
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 4e-61
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 2e-60
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 2e-60
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  263 bits (674), Expect = 3e-88
 Identities = 126/225 (56%), Positives = 163/225 (72%), Gaps = 4/225 (1%)

Query: 152 RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEF 211
           RTTG+VLDSGDGVTH VPIYEG+A+PH+IMR D+AGRD+T YL  +L + G +F TTAE 
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 212 EIVRTIKEKACYLSSNPVKE----ETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDL 267
           EIVR IKEK CY++ +   E     ++ S + +Y LPDG  + IG+ RFR PE LF+P  
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 268 IGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLFKGFGDRLLAEIRKNAPKDLK 327
           IG ES GIH+  Y +I K D+D+RK LY N V+SGG+T++ G  DR+  EI   AP  +K
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 328 IRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIH 372
           I+I AP ER YS WIGGSILASL TF++MW++K+E+DE G   +H
Sbjct: 181 IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.97
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.45
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 99.25
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.99
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.86
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.82
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 98.7
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 98.34
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 98.15
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.97
d1nbwa3202 ATPase domain of the glycerol dehydratase reactiva 93.8
d2d0oa3203 Diol dehydratase-reactivating factor large subunit 93.49
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 92.04
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 91.89
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 91.53
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 88.75
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 88.51
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 88.51
d2i7na2212 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 83.39
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 83.1
d2hoea2169 N-acetylglucosamine kinase {Thermotoga maritima [T 82.91
d1xc3a2176 Putative fructokinase YhdR {Bacillus subtilis [Tax 81.9
d2ap1a1186 Putative regulator protein YcfX {Salmonella typhim 80.54
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 80.27
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-54  Score=379.35  Aligned_cols=221  Identities=57%  Similarity=0.983  Sum_probs=209.9

Q ss_pred             CceEEEEecCCCceEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcccc
Q psy16631        152 RTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRNDIAGRDVTRYLKLLLRKEGVNFRTTAEFEIVRTIKEKACYLSSNPVKE  231 (376)
Q Consensus       152 ~~tglVVDiG~~~t~i~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~  231 (376)
                      ++||||||+|++.|+|+||+||+++.++++++++||++++++|.++|..++.+.....+.+.++++|+.+|+++.+...+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            57999999999999999999999999999999999999999999999999888877778899999999999999987665


Q ss_pred             ----ccCCCCceEEECCCCcEEEeccccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHHhhcCeEeccCcccc
Q psy16631        232 ----ETTDSEKHTYVLPDGSSLDIGHARFRAPEVLFRPDLIGEESEGIHDVLYYAIQKSDLDLRKVLYQNIVLSGGSTLF  307 (376)
Q Consensus       232 ----~~~~~~~~~~~lpd~~~i~v~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i  307 (376)
                          .......+.|.+|||+.+.++.+|+.+||+||+|+.++.+..+|+++|.++|.+||+|+|+.|++||+|+||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence                2345667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHhhCCCCceEEEeCCCCCccchhhhHHHhhccccccccceeHHHHhhcCchhhh
Q psy16631        308 KGFGDRLLAEIRKNAPKDLKIRISAPQERLYSTWIGGSILASLDTFKRMWVSKREFDEDGKRAIH  372 (376)
Q Consensus       308 ~Gl~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~  372 (376)
                      |||.+||++||..+.+...++++..+++|++++|+||||+|++++|+++||||+||+|+|+++||
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999999998889999999999999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure