Psyllid ID: psy16637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGPSSMNSMNLT
ccHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHccccccccccHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccc
cccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccEEEccccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHccEEcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccc
MYQLLFIQALrsdrvpaaAHIFVSAVFGEAFMLSaereldlphivehelrgnvpavlcsvpgydasgrVDDLAAELGKQIASIAIgsaegfnqadNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHslqphanfRLFLtmeinpkvpvnllragrifvfepppgikanllrtfstvpatrmmkapNERARLYFLLAWFHAIVQERLRyvplgwskfyefnesDLRVACDTLDTwidstamgkrdyamyhsagpssmnsmnlt
MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIgsaegfnqADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVfepppgikanllRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMyhsagpssmnsmnlt
MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGPSSMNSMNLT
**QLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAM***************
MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVP********NERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGPSS*******
MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGP*********
MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGP*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGKRDYAMYHSAGPSSMNSMNLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
P37276 4639 Dynein heavy chain, cytop yes N/A 0.924 0.052 0.799 1e-116
Q9JHU4 4644 Cytoplasmic dynein 1 heav yes N/A 0.939 0.053 0.729 1e-109
P38650 4644 Cytoplasmic dynein 1 heav yes N/A 0.939 0.053 0.725 1e-109
Q14204 4646 Cytoplasmic dynein 1 heav yes N/A 0.939 0.053 0.729 1e-109
P34036 4730 Dynein heavy chain, cytop yes N/A 0.916 0.051 0.602 5e-87
Q19020 4568 Dynein heavy chain, cytop yes N/A 0.920 0.053 0.586 1e-85
Q27171 4540 Dynein heavy chain, cytop N/A N/A 0.901 0.052 0.514 1e-69
P45444 4345 Dynein heavy chain, cytop yes N/A 0.882 0.053 0.485 3e-59
P78716 4349 Dynein heavy chain, cytop N/A N/A 0.886 0.053 0.479 5e-59
P45443 4367 Dynein heavy chain, cytop N/A N/A 0.920 0.055 0.461 6e-59
>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C PE=2 SV=2 Back     alignment and function desciption
 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 218/244 (89%)

Query: 1    MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSV 60
            ++QLL IQA R DRV AAAH  V+ V GE FM +AE+ELD   +V+ +L  N PA+LCSV
Sbjct: 3971 VHQLLLIQAFRPDRVIAAAHNVVNTVLGEDFMPNAEQELDFTSVVDKQLNCNTPALLCSV 4030

Query: 61   PGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL 120
            PG+DASGRVDDLAAE  KQI+SIAIGSAEGFNQA+  IN+A ++G+WVLLKNVHLAPQWL
Sbjct: 4031 PGFDASGRVDDLAAEQNKQISSIAIGSAEGFNQAERAINMACKTGRWVLLKNVHLAPQWL 4090

Query: 121  VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180
            VQLEKK+HSLQPH+ FRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI+ANLLRTFSTVPA
Sbjct: 4091 VQLEKKMHSLQPHSGFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIRANLLRTFSTVPA 4150

Query: 181  TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240
             RMMK P+ERARLYFLLAWFHAIVQERLRYVPLGW+K YEFNESDLRVACDTLDTWID+T
Sbjct: 4151 ARMMKTPSERARLYFLLAWFHAIVQERLRYVPLGWAKKYEFNESDLRVACDTLDTWIDTT 4210

Query: 241  AMGK 244
            AMG+
Sbjct: 4211 AMGR 4214
Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.
Drosophila melanogaster (taxid: 7227)
>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1 SV=2 Back     alignment and function description
>sp|P38650|DYHC1_RAT Cytoplasmic dynein 1 heavy chain 1 OS=Rattus norvegicus GN=Dync1h1 PE=1 SV=1 Back     alignment and function description
>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 Back     alignment and function description
>sp|P34036|DYHC_DICDI Dynein heavy chain, cytoplasmic OS=Dictyostelium discoideum GN=dhcA PE=1 SV=2 Back     alignment and function description
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorhabditis elegans GN=dhc-1 PE=3 SV=1 Back     alignment and function description
>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Paramecium tetraurelia GN=DHC-8 PE=2 SV=1 Back     alignment and function description
>sp|P45444|DYHC_EMENI Dynein heavy chain, cytoplasmic OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudA PE=3 SV=2 Back     alignment and function description
>sp|P78716|DYHC_FUSSO Dynein heavy chain, cytoplasmic OS=Fusarium solani subsp. pisi GN=DHC1 PE=3 SV=1 Back     alignment and function description
>sp|P45443|DYHC_NEUCR Dynein heavy chain, cytoplasmic OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
91087317 4649 PREDICTED: similar to dynein heavy chain 0.924 0.052 0.844 1e-121
383864984 4630 PREDICTED: dynein heavy chain, cytoplasm 0.924 0.052 0.831 1e-119
383864986 4629 PREDICTED: dynein heavy chain, cytoplasm 0.924 0.052 0.831 1e-119
383864988 4474 PREDICTED: dynein heavy chain, cytoplasm 0.924 0.054 0.831 1e-119
340708902 4641 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.924 0.052 0.827 1e-119
350419063 4641 PREDICTED: dynein heavy chain, cytoplasm 0.924 0.052 0.827 1e-119
307195555 3852 Dynein heavy chain, cytoplasmic [Harpegn 0.924 0.063 0.819 1e-118
380028455 4628 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.924 0.052 0.819 1e-117
328791771 4425 PREDICTED: dynein heavy chain, cytoplasm 0.924 0.055 0.819 1e-117
157115226 4662 dynein heavy chain [Aedes aegypti] gi|10 0.924 0.052 0.819 1e-117
>gi|91087317|ref|XP_975584.1| PREDICTED: similar to dynein heavy chain [Tribolium castaneum] gi|270010987|gb|EFA07435.1| dynein heavy chain [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/244 (84%), Positives = 223/244 (91%)

Query: 1    MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSV 60
            MYQLL IQA R DRV AAA  FVSAV GE FM SAE+ELDL   VE E+R NVPA+LCSV
Sbjct: 3981 MYQLLVIQAFRPDRVIAAAQFFVSAVLGENFMPSAEKELDLAECVEKEIRSNVPALLCSV 4040

Query: 61   PGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL 120
            PG+DAS RVDDLAAEL KQI+SIAIGSAEGFNQAD  IN+A ++G+WV+LKNVHLAPQWL
Sbjct: 4041 PGFDASSRVDDLAAELNKQISSIAIGSAEGFNQADRAINMACKTGRWVMLKNVHLAPQWL 4100

Query: 121  VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180
            VQLEKKLHSLQPHANFRLFLTMEINPK+PVNLLRAGRIFVFEPPPGI+ANLLRTFSTVPA
Sbjct: 4101 VQLEKKLHSLQPHANFRLFLTMEINPKLPVNLLRAGRIFVFEPPPGIRANLLRTFSTVPA 4160

Query: 181  TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240
            +RMMK PNERARLYFLLAWFHAIVQERLRY PLGW+K+YEFNESDLRVACDTLDTWID+T
Sbjct: 4161 SRMMKPPNERARLYFLLAWFHAIVQERLRYAPLGWAKYYEFNESDLRVACDTLDTWIDAT 4220

Query: 241  AMGK 244
            AMG+
Sbjct: 4221 AMGR 4224

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383864984|ref|XP_003707957.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864986|ref|XP_003707958.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864988|ref|XP_003707959.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 3 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340708902|ref|XP_003393056.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350419063|ref|XP_003492058.1| PREDICTED: dynein heavy chain, cytoplasmic-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307195555|gb|EFN77430.1| Dynein heavy chain, cytoplasmic [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380028455|ref|XP_003697917.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like [Apis florea] Back     alignment and taxonomy information
>gi|328791771|ref|XP_003251632.1| PREDICTED: dynein heavy chain, cytoplasmic, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|157115226|ref|XP_001658153.1| dynein heavy chain [Aedes aegypti] gi|108876984|gb|EAT41209.1| AAEL007132-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
FB|FBgn0261797 4639 Dhc64C "Dynein heavy chain 64C 0.924 0.052 0.799 1.4e-101
UNIPROTKB|F1NVQ7 4646 DYNC1H1 "Uncharacterized prote 0.931 0.052 0.739 2.8e-96
UNIPROTKB|F1NKL4 4653 DYNC1H1 "Uncharacterized prote 0.931 0.052 0.739 2.8e-96
UNIPROTKB|F1LRT9 3642 Dync1h1 "Cytoplasmic dynein 1 0.931 0.067 0.735 4e-96
UNIPROTKB|F1PGY9 4646 DYNC1H1 "Uncharacterized prote 0.931 0.052 0.735 4.5e-96
MGI|MGI:103147 4644 Dync1h1 "dynein cytoplasmic 1 0.931 0.052 0.735 1.2e-95
RGD|2511 4644 Dync1h1 "dynein cytoplasmic 1 0.931 0.052 0.731 1.2e-95
UNIPROTKB|Q14204 4646 DYNC1H1 "Cytoplasmic dynein 1 0.931 0.052 0.735 1.2e-95
UNIPROTKB|E1BDX8 4646 DYNC1H1 "Uncharacterized prote 0.931 0.052 0.727 1.5e-95
ZFIN|ZDB-GENE-030131-7050 4643 dync1h1 "dynein, cytoplasmic 1 0.931 0.052 0.715 9.7e-94
FB|FBgn0261797 Dhc64C "Dynein heavy chain 64C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1026 (366.2 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 195/244 (79%), Positives = 218/244 (89%)

Query:     1 MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSV 60
             ++QLL IQA R DRV AAAH  V+ V GE FM +AE+ELD   +V+ +L  N PA+LCSV
Sbjct:  3971 VHQLLLIQAFRPDRVIAAAHNVVNTVLGEDFMPNAEQELDFTSVVDKQLNCNTPALLCSV 4030

Query:    61 PGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL 120
             PG+DASGRVDDLAAE  KQI+SIAIGSAEGFNQA+  IN+A ++G+WVLLKNVHLAPQWL
Sbjct:  4031 PGFDASGRVDDLAAEQNKQISSIAIGSAEGFNQAERAINMACKTGRWVLLKNVHLAPQWL 4090

Query:   121 VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180
             VQLEKK+HSLQPH+ FRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI+ANLLRTFSTVPA
Sbjct:  4091 VQLEKKMHSLQPHSGFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIRANLLRTFSTVPA 4150

Query:   181 TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240
              RMMK P+ERARLYFLLAWFHAIVQERLRYVPLGW+K YEFNESDLRVACDTLDTWID+T
Sbjct:  4151 ARMMKTPSERARLYFLLAWFHAIVQERLRYVPLGWAKKYEFNESDLRVACDTLDTWIDTT 4210

Query:   241 AMGK 244
             AMG+
Sbjct:  4211 AMGR 4214
GO:0005875 "microtubule associated complex" evidence=NAS;IDA
GO:0007018 "microtubule-based movement" evidence=ISS;NAS;IDA
GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS;IDA
GO:0003777 "microtubule motor activity" evidence=IDA
GO:0048477 "oogenesis" evidence=IMP;NAS
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP;TAS
GO:0005868 "cytoplasmic dynein complex" evidence=ISS
GO:0003774 "motor activity" evidence=ISS
GO:0045169 "fusome" evidence=TAS
GO:0045478 "fusome organization" evidence=TAS
GO:0048134 "germ-line cyst formation" evidence=TAS
GO:0005938 "cell cortex" evidence=IDA
GO:0007405 "neuroblast proliferation" evidence=IMP
GO:0016319 "mushroom body development" evidence=IMP
GO:0008088 "axon cargo transport" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0007301 "female germline ring canal formation" evidence=TAS
GO:0045172 "germline ring canal" evidence=TAS
GO:0007098 "centrosome cycle" evidence=IMP
GO:0008298 "intracellular mRNA localization" evidence=TAS
GO:0005737 "cytoplasm" evidence=IDA;NAS
GO:0007312 "oocyte nucleus migration involved in oocyte dorsal/ventral axis specification" evidence=TAS
GO:0040001 "establishment of mitotic spindle localization" evidence=TAS
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0043148 "mitotic spindle stabilization" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0046604 "positive regulation of mitotic centrosome separation" evidence=IMP
GO:0051642 "centrosome localization" evidence=IMP
GO:0030723 "ovarian fusome organization" evidence=IMP
GO:0007282 "cystoblast division" evidence=IMP
GO:0051237 "maintenance of RNA location" evidence=IDA
GO:0034501 "protein localization to kinetochore" evidence=IMP
GO:0007051 "spindle organization" evidence=IMP
GO:0051683 "establishment of Golgi localization" evidence=IMP
GO:0007349 "cellularization" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0047497 "mitochondrion transport along microtubule" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0006886 "intracellular protein transport" evidence=IMP
GO:0048311 "mitochondrion distribution" evidence=IMP
GO:0000776 "kinetochore" evidence=IDA
GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP
GO:0050658 "RNA transport" evidence=IMP
GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP
GO:0040003 "chitin-based cuticle development" evidence=IGI
GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IDA
GO:0030529 "ribonucleoprotein complex" evidence=IDA
GO:2001019 "positive regulation of retrograde axon cargo transport" evidence=IMP
GO:0030286 "dynein complex" evidence=IPI
GO:0007279 "pole cell formation" evidence=IMP
GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP
UNIPROTKB|F1NVQ7 DYNC1H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKL4 DYNC1H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRT9 Dync1h1 "Cytoplasmic dynein 1 heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGY9 DYNC1H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:103147 Dync1h1 "dynein cytoplasmic 1 heavy chain 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2511 Dync1h1 "dynein cytoplasmic 1 heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q14204 DYNC1H1 "Cytoplasmic dynein 1 heavy chain 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BDX8 DYNC1H1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7050 dync1h1 "dynein, cytoplasmic 1, heavy chain 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q14204DYHC1_HUMANNo assigned EC number0.72980.93930.0533yesN/A
Q9JHU4DYHC1_MOUSENo assigned EC number0.72980.93930.0534yesN/A
P38650DYHC1_RATNo assigned EC number0.72580.93930.0534yesN/A
P34036DYHC_DICDINo assigned EC number0.60240.91660.0511yesN/A
Q19020DYHC_CAEELNo assigned EC number0.58600.92040.0531yesN/A
P37276DYHC_DROMENo assigned EC number0.79910.92420.0525yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
pfam03028 706 pfam03028, Dynein_heavy, Dynein heavy chain and re 1e-111
COG52453164 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] 4e-17
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information 
 Score =  335 bits (862), Expect = e-111
 Identities = 114/247 (46%), Positives = 150/247 (60%), Gaps = 10/247 (4%)

Query: 4   LLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGY 63
           LL ++ALR DR+  AA  FVS   GE F+    + LDL  I E E   + P      PG 
Sbjct: 72  LLLLRALRPDRMTYAARNFVSEKLGEKFVEP--QPLDLSKIYE-ESSPSTPIFFILSPGV 128

Query: 64  DASGRVDDLAAELG--KQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLV 121
           D S  V+ LA ++G  K+  S+++G  +G   A+  I  A +SG WV+L+N+HLAP WL 
Sbjct: 129 DPSKDVEKLAKKMGFGKKFHSVSLGQGQGP-IAEKAIETAAKSGHWVMLQNIHLAPSWLP 187

Query: 122 QLEKKLHSLQP--HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTV- 178
            LEKKL SL P  H +FRLFLT E  P +P+ LL+       EPP G+KANLLR  S+  
Sbjct: 188 TLEKKLESLTPGSHPDFRLFLTAEPAPSIPIGLLQNSIKITNEPPTGLKANLLRALSSFT 247

Query: 179 -PATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWI 237
                M K P E  R+ FLL +FHA+VQER ++ PLGW+K YEFNE DLR++ D LD ++
Sbjct: 248 QETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFNEGDLRISLDVLDNYL 307

Query: 238 DSTAMGK 244
           D+ A  K
Sbjct: 308 DANAPDK 314

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
PF03028 707 Dynein_heavy: Dynein heavy chain and region D6 of 100.0
COG52453164 DYN1 Dynein, heavy chain [Cytoskeleton] 99.65
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 99.41
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 98.31
PHA02244383 ATPase-like protein 98.23
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 98.19
PF12781228 AAA_9: ATP-binding dynein motor region D5; PDB: 3V 97.86
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 97.82
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 97.76
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 97.76
KOG1808|consensus 1856 97.28
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 96.45
PF00004132 AAA: ATPase family associated with various cellula 95.37
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 95.16
PHA02544316 44 clamp loader, small subunit; Provisional 94.99
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 94.98
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 94.97
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 94.47
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 94.33
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 93.94
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 93.83
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 93.58
PLN03025319 replication factor C subunit; Provisional 93.58
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 93.36
PRK14952 584 DNA polymerase III subunits gamma and tau; Provisi 92.85
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 92.78
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 92.57
PF13173128 AAA_14: AAA domain 92.54
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 92.48
PRK13342 413 recombination factor protein RarA; Reviewed 92.02
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 91.93
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 91.65
PRK04195 482 replication factor C large subunit; Provisional 91.49
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 91.31
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 91.29
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 90.93
PRK14962 472 DNA polymerase III subunits gamma and tau; Provisi 90.87
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 90.49
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 90.44
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 90.11
PRK14965 576 DNA polymerase III subunits gamma and tau; Provisi 89.98
PRK05707328 DNA polymerase III subunit delta'; Validated 89.73
PRK04132846 replication factor C small subunit; Provisional 89.62
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 89.49
PRK08058329 DNA polymerase III subunit delta'; Validated 89.24
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 89.07
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 88.75
COG0714329 MoxR-like ATPases [General function prediction onl 88.49
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 88.3
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 88.25
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 88.05
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 87.93
PRK05564313 DNA polymerase III subunit delta'; Validated 87.82
PRK00440319 rfc replication factor C small subunit; Reviewed 87.55
PRK14948 620 DNA polymerase III subunits gamma and tau; Provisi 87.24
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 87.02
PRK03992389 proteasome-activating nucleotidase; Provisional 86.88
PRK07940 394 DNA polymerase III subunit delta'; Validated 86.54
COG0470325 HolB ATPase involved in DNA replication [DNA repli 86.42
PRK06647 563 DNA polymerase III subunits gamma and tau; Validat 85.4
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 84.37
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 84.11
CHL00176 638 ftsH cell division protein; Validated 83.86
PRK12402337 replication factor C small subunit 2; Reviewed 81.72
PRK08485206 DNA polymerase III subunit delta'; Validated 81.51
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 80.92
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella Back     alignment and domain information 
Probab=100.00  E-value=6.5e-64  Score=499.63  Aligned_cols=253  Identities=48%  Similarity=0.814  Sum_probs=209.1

Q ss_pred             ChhhhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhc---
Q psy16637          1 MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG---   77 (264)
Q Consensus         1 fqklll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~---   77 (264)
                      |||+||+||+||||+..++++||.++||.+|.+  ++++||++++. ++++++||||++++|+||+..|.++|++++   
T Consensus        68 fqklllir~lRpDrl~~~~~~~v~~~lg~~~~~--~~~~~l~~~~~-~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~  144 (707)
T PF03028_consen   68 FQKLLLIRALRPDRLIAAMRKFVSSVLGSRFVE--PPPFDLESIYE-ESSPTTPILFILSPGSDPSSEIEQLAKKKGFGN  144 (707)
T ss_dssp             HHHHHHHHHH-CCCHHHHHHHHHHHHH-TTTTS-------HHHHHH-CTTTTC-EEEEE-TT--THHHHHHHHHCTT---
T ss_pred             HHHHHHHHHhCccHhHHHHHHHHHHHcCchhhc--CCCCCHHHHHH-hcCCCCceEEEeCCCCChHHHHHHHHHHHhhhh
Confidence            799999999999999999999999999999998  78999999996 899999999999999999999999999998   


Q ss_pred             ccceEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhhccCC--CCCceEEEecCCCCCChHhHhhc
Q psy16637         78 KQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQP--HANFRLFLTMEINPKVPVNLLRA  155 (264)
Q Consensus        78 ~~~~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~--h~~FRL~lt~~~~~~~P~~lL~~  155 (264)
                      .++++||||++|+. .|+++|++|+++|+||+||||||+++|++.|++.++.+..  |++||||||+++++.||.++|++
T Consensus       145 ~~~~~islG~~~~~-~a~~~l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~~P~~lL~~  223 (707)
T PF03028_consen  145 KKLQSISLGSGQGP-EAEKALKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSPEIHPNFRLFLTSEPSPSFPISLLQS  223 (707)
T ss_dssp             --EEEEETTSHHHH-HHHHHHHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SSTTSTT-EEEEEEESSTTS-HHHHHC
T ss_pred             hheeecCCCCchHH-HHHHHHHHHhcCCeEEEcccchhHHHHHHHHHHHHhccccccccceEEEEEecCcccCCHHHHHc
Confidence            78999999999985 9999999999999999999999999999999999998876  99999999999999999999999


Q ss_pred             ceeeeecCCccHHHHHHHHhcCCChhh--hccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHH
Q psy16637        156 GRIFVFEPPPGIKANLLRTFSTVPATR--MMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTL  233 (264)
Q Consensus       156 s~kv~~e~p~~lk~~l~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l  233 (264)
                      |+||+||+|+|+|++|.++|.++.++.  .+.++.++++++|+|||||||++||++|||+|||++|+||++||.+|++++
T Consensus       224 s~kv~~E~p~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l  303 (707)
T PF03028_consen  224 SIKVTYEPPPGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDIL  303 (707)
T ss_dssp             SEEEEE---SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHH
T ss_pred             ccceeeCChhHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHH
Confidence            999999999999999999999976654  344667899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCC-------CCCCcccCCCCc
Q psy16637        234 DTWIDSTAMGKR-------DYAMYHSAGPSS  257 (264)
Q Consensus       234 ~~~~~~~~~~~~-------~~~~~~~~~~~~  257 (264)
                      +++++..+....       -+-..+|||+-.
T Consensus       304 ~~~~~~~~~~~ipw~~l~~l~~~i~YGGrv~  334 (707)
T PF03028_consen  304 DNWLDESSPESIPWDALRYLIGEIVYGGRVD  334 (707)
T ss_dssp             HHHHHHCSCCCTTHHHHHHHHHHTTTTTT-S
T ss_pred             HHHHhhccccCCcHHHHHHHhhhceecCeec
Confidence            999998532211       222468999854

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>KOG1808|consensus Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK08485 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
3vkg_A 3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 7e-88
3vkh_A 3367 X-Ray Structure Of A Functional Full-Length Dynein 8e-88
4ai6_A2695 Dynein Motor Domain - Adp Complex Length = 2695 2e-16
3qmz_A2486 Crystal Structure Of The Cytoplasmic Dynein Heavy C 1e-15
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure 
Iteration: 1

 Score =  320 bits (819), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 147/244 (60%), Positives = 189/244 (77%), Gaps = 2/244 (0%)
Query: 3    QLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPG 62
            ++L ++A  SDRV   +H FV +VFGE F+ +  +ELD+ +IVE E++ + P +LCSVPG
Sbjct: 2597 KILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPG 2654
Query: 63   YDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQ 122
            YDAS +VDDLA +L KQ  S AIGS EGF  A+  I  A +SG WVLLKN+HLAPQWLVQ
Sbjct: 2655 YDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQ 2714
Query: 123  LEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATR 182
            LEKKLHSL PH +FRLF+T EI+P +P NLLR   +F +E PPG+KANLL TF  +PATR
Sbjct: 2715 LEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATR 2774
Query: 183  MMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAM 242
            M K P ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D  + 
Sbjct: 2775 MDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSK 2834
Query: 243  GKRD 246
            G+ +
Sbjct: 2835 GRSN 2838
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 Back     alignment and structure
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-102
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 2e-70
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
 Score =  323 bits (830), Expect = e-102
 Identities = 147/248 (59%), Positives = 189/248 (76%), Gaps = 2/248 (0%)

Query: 1    MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSV 60
              ++L ++A  SDRV   +H FV +VFGE F+ +  +ELD+ +IVE E++ + P +LCSV
Sbjct: 2595 FRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSV 2652

Query: 61   PGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWL 120
            PGYDAS +VDDLA +L KQ  S AIGS EGF  A+  I  A +SG WVLLKN+HLAPQWL
Sbjct: 2653 PGYDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWL 2712

Query: 121  VQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPA 180
            VQLEKKLHSL PH +FRLF+T EI+P +P NLLR   +F +E PPG+KANLL TF  +PA
Sbjct: 2713 VQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPA 2772

Query: 181  TRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST 240
            TRM K P ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D  
Sbjct: 2773 TRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLY 2832

Query: 241  AMGKRDYA 248
            + G+ +  
Sbjct: 2833 SKGRSNID 2840
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 100.0
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 100.0
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 97.44
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 96.3
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 96.09
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.93
2chg_A226 Replication factor C small subunit; DNA-binding pr 95.87
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 95.59
2chq_A319 Replication factor C small subunit; DNA-binding pr 94.72
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 94.61
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 94.57
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 94.52
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 94.24
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 93.93
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 92.98
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 92.88
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 92.36
3pvs_A 447 Replication-associated recombination protein A; ma 92.24
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 92.23
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 92.12
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 91.56
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 91.32
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 91.03
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 90.75
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 90.57
2gno_A305 DNA polymerase III, gamma subunit-related protein; 90.53
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 90.03
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 89.7
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 89.59
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 89.29
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 89.27
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 89.12
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 89.09
2v1u_A387 Cell division control protein 6 homolog; DNA repli 88.84
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 88.69
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 88.44
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 88.09
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 88.06
3co5_A143 Putative two-component system transcriptional RES 87.97
1ojl_A304 Transcriptional regulatory protein ZRAR; response 87.79
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 86.5
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 86.45
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 86.02
2r44_A331 Uncharacterized protein; putative ATPase, structur 85.98
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 85.7
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 85.28
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 84.98
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 84.16
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 81.06
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 81.06
3bos_A242 Putative DNA replication factor; P-loop containing 80.01
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-66  Score=568.04  Aligned_cols=254  Identities=58%  Similarity=1.023  Sum_probs=238.7

Q ss_pred             ChhhhhHHhhcCCcHHHHHHHHHHHHhCcccccccCCCCChhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcccc
Q psy16637          1 MYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQI   80 (264)
Q Consensus         1 fqklll~r~lrpDr~~~a~~~~v~~~lg~~~~~~~~~~~~L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~~~   80 (264)
                      ||||||+||+||||+..|+++||.+.||.+|++  ++++||+++++++|++++|+||++|||+||+..|+++|+++|.++
T Consensus      2595 fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~--~~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA~~~~~~~ 2672 (3245)
T 3vkg_A         2595 FRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLN--TQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHKQY 2672 (3245)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTC--C--CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHcCCccCC--CCCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHHHHhCCCc
Confidence            799999999999999999999999999999998  899999999953799999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeEEeccccchhHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeee
Q psy16637         81 ASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFV  160 (264)
Q Consensus        81 ~~islG~~~~~~~a~~~l~~a~~~G~WllL~N~hL~~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~  160 (264)
                      +.||||+||+...|+++|++|+++|+||+||||||+++||+.||+++++.++|++||||||++|++.||.++||+|+|++
T Consensus      2673 ~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~~~h~~FRLwLTsep~~~fP~~iLq~siKit 2752 (3245)
T 3vkg_A         2673 KSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFS 2752 (3245)
T ss_dssp             CCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTCCCCTTCEEECCEESCTTSCHHHHHTSEECC
T ss_pred             EEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHccCCCCCeeEEEEecCCCCCCHHHHHhhhHhe
Confidence            99999999985689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCccHHHHHHHHhcCCChhhhccChhHHHHHHHHHHHHHHHHhhhhhccccCCccccccCHHHHHHHHHHHHHHHhhh
Q psy16637        161 FEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDST  240 (264)
Q Consensus       161 ~e~p~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Hail~eR~~y~p~Gws~~Y~f~~~Dl~~~~~~l~~~~~~~  240 (264)
                      +|||+|+|+||+++|..++++.+++++.++++++|+|||||||++||++|||+|||++|+||++||.+|+++|++|++..
T Consensus      2753 ~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~ 2832 (3245)
T 3vkg_A         2753 YENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLY 2832 (3245)
T ss_dssp             BCCCSSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eCCChhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988888877888999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCC--------------CCCcccCCCC
Q psy16637        241 AMGKRD--------------YAMYHSAGPS  256 (264)
Q Consensus       241 ~~~~~~--------------~~~~~~~~~~  256 (264)
                      +.+|.+              +-+.+|||+-
T Consensus      2833 ~~~~~n~~~~~iPw~~L~yl~gei~YGGrV 2862 (3245)
T 3vkg_A         2833 SKGRSNIDPDKIPWIAVRTILGSTIYGGRI 2862 (3245)
T ss_dssp             STTCSCCCTTTSCHHHHHHCCCCCCCSTTC
T ss_pred             cccccccCCCCCCHHHHHHHHhhcccCCcc
Confidence            666643              3345899985
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 96.47
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 95.04
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.0
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 94.33
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 93.75
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 91.92
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 91.72
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 89.96
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 89.09
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 87.94
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 86.91
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 86.85
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 86.44
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 86.08
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.026  Score=44.77  Aligned_cols=130  Identities=13%  Similarity=0.080  Sum_probs=89.2

Q ss_pred             hhHHhhhhcCCCccEEEEeCCCCCChhHHHHHHHHhcc------cceEEecCCCC--CHHHHHHHHHHHHHc---CCe--
Q psy16637         41 LPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGK------QIASIAIGSAE--GFNQADNVINVAVRS---GKW--  107 (264)
Q Consensus        41 L~~~~~~~s~~~~Pii~i~s~g~DP~~~i~~lA~~~~~------~~~~islG~~~--~~~~a~~~l~~a~~~---G~W--  107 (264)
                      |+.+++  .+...=+++..++|..++.....+|+....      .+..+.- ++.  +++.++.+++.+...   |+|  
T Consensus         6 l~~~i~--~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~-~~~~I~Id~IR~i~~~~~~~~~~~~~Kv   82 (198)
T d2gnoa2           6 LKRIIE--KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP-EGENIGIDDIRTIKDFLNYSPELYTRKY   82 (198)
T ss_dssp             HHHHHH--TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC-SSSCBCHHHHHHHHHHHTSCCSSSSSEE
T ss_pred             HHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC-CcCCCCHHHHHHHHHHHhhCcccCCCEE
Confidence            345554  232223666777888888888888875431      3445542 222  467888888777654   554  


Q ss_pred             EEeccccch-hHHHHHHHHHhhccCCCCCceEEEecCCCCCChHhHhhcceeeeecCCccHHHHHHHHh
Q psy16637        108 VLLKNVHLA-PQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTF  175 (264)
Q Consensus       108 llL~N~hL~-~~~l~~L~~~l~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~e~p~~lk~~l~~~~  175 (264)
                      ++++++|.. ..--..|-+.++  ++.++=+.+|+|+....++..+..+|..+.+..|...+..+....
T Consensus        83 iIId~ad~l~~~aqNaLLK~LE--EPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~~~~~~~~~~  149 (198)
T d2gnoa2          83 VIVHDCERMTQQAANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI  149 (198)
T ss_dssp             EEETTGGGBCHHHHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred             EEEeCccccchhhhhHHHHHHh--CCCCCceeeeccCChhhCHHHHhcceEEEeCCCchHHHHHHHHHH
Confidence            567999887 444456666666  566677888888888899999999999999988877666555443
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure