Psyllid ID: psy16658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGGK
Secondary Structure (PSIPRED)
ccccccccccEEEccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
ALGAVTIgtglawtspvlpiltsttetsvlnepvdrgqaSLIGSLIAIGAIfgalpagsiadkfgrkpvilAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRagvatgglsAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMmedgkdvssisflpLLSVIFFIVMFSlgygpipwmmvgelfapevkgsATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVlvpetkgktLNQIQRELGGGK
Flexible Loop (DISEMBL)
algavtigtglawtspvlpiLTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVlvpetkgktlnqiqrelgggk
Low Complexity Region (SEG)
ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGGK
Disordered region (IsUnstruct)
***AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET****************
Disordered Region (DISOPRED)
ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELG***
Disordered Region (DISEMBL)
ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGGK
Disordered Region (DISPRO)
ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELG***
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.584	0.217	0.465	3e-41
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.503	0.201	0.484	4e-41
A1Z8N1	857	Facilitated trehalose tra	no	N/A	0.584	0.217	0.465	1e-40
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.584	0.217	0.460	3e-40
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.584	0.217	0.449	3e-40
B4J913	929	Facilitated trehalose tra	N/A	N/A	0.515	0.176	0.461	8e-40
Q291H8	868	Facilitated trehalose tra	no	N/A	0.544	0.199	0.454	2e-39
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.544	0.199	0.454	2e-39
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.584	0.215	0.444	3e-39
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.584	0.214	0.433	4e-39

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score =  169 bits (428), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 126/189 (66%), Gaps = 3/189 (1%)

Query: 131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
           G++A+I   + I + A S+I G +  IIVGIV F+ T + +VL+D+AGR+ILL +SD  M
Sbjct: 651 GINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAM 710

Query: 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
            L L VLG +FY   +G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct: 711 VLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 770

Query: 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
           SA  +A A NW   F+VT  F  L   +G+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct: 771 SAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 830

Query: 308 NQIQRELGG 316
             I+R++ G
Sbjct: 831 EDIERKMMG 839

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Drosophila sechellia (taxid: 7238)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  169 bits (427), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 112/163 (68%)

Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
           IIVG+V FI T ++ VL+D+ GR+ILL +SD  M + L  LG +FYM  +G DVS I +L
Sbjct: 613 IIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWL 672

Query: 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273
           PL + + F+V FSLG+GPIPW+M+GE+   +++GSA  +A A NW   F+VT  F  +  
Sbjct: 673 PLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITA 732

Query: 274 NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
           ++G+   FW+F  IC VG LF  V VPET+GK+L  I+R++ G
Sbjct: 733 SIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMG 775

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|A1Z8N1|TRE11_DROME Facilitated trehalose transporter Tret1-1 OS=Drosophila melanogaster GN=Tret1-1 PE=1 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 125/189 (66%), Gaps = 3/189 (1%)

Query: 131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
           G++A+I   + I + A S+I G +  IIVGIV F+ T + +VL+D+AGR+ILL +SD  M
Sbjct: 651 GINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAM 710

Query: 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
            L L VLG +FY    G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct: 711 VLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 770

Query: 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
           SA  +A A NW   F+VT  F  L   +G+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct: 771 SAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 830

Query: 308 NQIQRELGG 316
             I+R++ G
Sbjct: 831 EDIERKMMG 839

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila melanogaster (taxid: 7227)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 126/189 (66%), Gaps = 3/189 (1%)

Query: 131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
           G++A+I   + I + A S+I G I  IIVG+V F+ T + +VL+D+AGR+ILL +S+  M
Sbjct: 650 GINAVIFYTVQIFKDAGSTIDGNICTIIVGVVNFLATFIGIVLIDRAGRKILLYVSNIAM 709

Query: 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
            L L VLG +FY    G DVS++ +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct: 710 ILTLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 769

Query: 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
           SA  +A A NW   F+VT  F  L   +G+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct: 770 SAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 829

Query: 308 NQIQRELGG 316
             I+R++ G
Sbjct: 830 EDIERKMMG 838

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 126/189 (66%), Gaps = 3/189 (1%)

Query: 131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
           G++A+I   + I + A S+I G +  IIVG+V F+ T + ++L+D+AGR+ILL  SD  M
Sbjct: 650 GINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRAGRKILLYASDIAM 709

Query: 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
            L L VLG +FY    G DVS + +LPL   + +I+ FS+G+GPIPW+M+GE+   +++G
Sbjct: 710 VLTLFVLGGFFYCKAHGPDVSHLGWLPLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRG 769

Query: 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
           +A  +A + NW   F+VT  F  LV +LG+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct: 770 AAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVILYVPETQGKTL 829

Query: 308 NQIQRELGG 316
             I+R++ G
Sbjct: 830 EDIERKMMG 838

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4J913|TRET1_DROGR Facilitated trehalose transporter Tret1 OS=Drosophila grimshawi GN=Tret1 PE=3 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 113/167 (67%)

Query: 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSS 209
            +  IIVG V FI T + ++L+D+AGR+ILL +S+  M L L VLG +FY   +G DVS+
Sbjct: 745 NVCTIIVGTVNFIATFIGILLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKANGMDVSN 804

Query: 210 ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV 269
           +  LPL   + +I+ FSLG+GPIPW+M+GE+   +++GSA  +A A NW   F+VT  F+
Sbjct: 805 VGLLPLCCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKSFL 864

Query: 270 FLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
            ++K +G+   FW+F VIC +G  F    VPET+GKTL  I+R++ G
Sbjct: 865 DMIKLIGAHGAFWLFGVICCIGMFFVIFCVPETQGKTLEDIERKMMG 911

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila grimshawi (taxid: 7222)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 144 AESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMME 202
           A S+I G +  IIVGIV F+ T ++ +L+D+AGR+ILL +S+  M + L VLG +FY   
Sbjct: 677 AGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKS 736

Query: 203 DGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAF 262
            G+DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++GSA  +A A NW   F
Sbjct: 737 HGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTF 796

Query: 263 IVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
           +VT  F  ++  +G+   FW+F  ICF+G  F  + VPET+GKTL  I+R++ G
Sbjct: 797 VVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKMMG 850

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 118/174 (67%), Gaps = 1/174 (0%)

Query: 144 AESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMME 202
           A S+I G +  IIVGIV F+ T ++ +L+D+AGR+ILL +S+  M + L VLG +FY   
Sbjct: 678 AGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKS 737

Query: 203 DGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAF 262
            G+DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++GSA  +A A NW   F
Sbjct: 738 HGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTF 797

Query: 263 IVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
           +VT  F  ++  +G+   FW+F  ICF+G  F  + VPET+GKTL  I+R++ G
Sbjct: 798 VVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKMMG 851

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 125/189 (66%), Gaps = 3/189 (1%)

Query: 131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
           G++A+I   + I + A S+I G +  IIVG+V F+ T ++ VL+D+AGR+ILL +S+  M
Sbjct: 657 GINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRAGRKILLYVSNVAM 716

Query: 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
            L L VLG +FY    G D S++ +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct: 717 ILTLFVLGGFFYCKSTGMDTSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRG 776

Query: 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
           SA  +A A NW   F+VT  F  ++  +G+   FW+F  ICFVG  F    VPET+GKTL
Sbjct: 777 SAASVATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTL 836

Query: 308 NQIQRELGG 316
             I+R++ G
Sbjct: 837 EDIERKMMG 845

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 126/189 (66%), Gaps = 3/189 (1%)

Query: 131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
           G++A+I   + I + A S+I G +  IIVG+V F+ T ++ +L+D+AGR+ILL +S+  M
Sbjct: 660 GINAVIFYTVSIFKDAGSTIDGNVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAM 719

Query: 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
            + L VLG +FY    G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct: 720 IITLFVLGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 779

Query: 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
           SA  +A A NW   F+VT  F  ++  +G+   FW+F  ICF+G  F  + VPET+GKTL
Sbjct: 780 SAASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTL 839

Query: 308 NQIQRELGG 316
             I+R++ G
Sbjct: 840 EDIERKMMG 848

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
195494704	293	GE22106 [Drosophila yakuba] gi|194181053	0.842	0.914	0.385	1e-49
291461567	478	sugar transporter 4 [Nilaparvata lugens]	0.474	0.315	0.581	9e-44
340708574	477	PREDICTED: facilitated trehalose transpo	0.496	0.331	0.514	2e-43
195144544	512	GL24034 [Drosophila persimilis] gi|19845	0.663	0.412	0.439	3e-43
390178340	518	GA26484, isoform B [Drosophila pseudoobs	0.663	0.407	0.439	4e-43
357619298	500	hypothetical protein KGM_13187 [Danaus p	0.437	0.278	0.553	1e-42
194745444	515	GF16361 [Drosophila ananassae] gi|190628	0.430	0.266	0.518	3e-42
157126364	488	sugar transporter [Aedes aegypti]	0.578	0.377	0.523	3e-42
195391242	508	GJ22894 [Drosophila virilis] gi|19415235	0.455	0.285	0.514	4e-42
195428086	552	GK17357 [Drosophila willistoni] gi|19415	0.588	0.338	0.487	4e-42

>gi|195494704|ref|XP_002094952.1| GE22106 [Drosophila yakuba] gi|194181053|gb|EDW94664.1| GE22106 [Drosophila yakuba]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 173/288 (60%), Gaps = 20/288 (6%)

Query: 46  IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATG 105
           + +GA    +P G + +  GRK  +L   +PFI+ WV++++A N+ ML+A+RFI G+A G
Sbjct: 1   MTLGAACVCIPIGFLINMIGRKWTMLLLVLPFILGWVMLIWASNLGMLYASRFILGIAGG 60

Query: 106 GLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFI-----------GEIAESSIRGISAI 154
                 PM+ GEIA+  IR     G L +   + I            + +E++I+ I  +
Sbjct: 61  AFCVTAPMYTGEIAQKEIR-----GTLGSFFQLMITIGILFVYAVGADRSENAIKSIQWL 115

Query: 155 IVGIVQF---IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDG-KDVSSI 210
                 +   +    S ++VDK GRRILLL S   MA+    +G YFY+ +     V+++
Sbjct: 116 RGKEYDYEPELAELRSTLVVDKLGRRILLLASGIAMAISTTAIGVYFYLQDQNINQVANL 175

Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
            +LP+ S+  FI+MFS+GYGP+PW+M+GELFA ++KG A  +A   NW+ AF++T  FV 
Sbjct: 176 GWLPVGSLCLFIIMFSIGYGPVPWLMMGELFATDIKGFAGSLAGTSNWLLAFVITKTFVN 235

Query: 271 LVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGGK 318
           L + +G   TFW+F+ +  +G +F F  VPETKGK+LN+IQ+EL G +
Sbjct: 236 LNEGMGIGGTFWLFAGLTVLGVIFVFFAVPETKGKSLNEIQQELAGNR 283

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461567|dbj|BAI83418.1| sugar transporter 4 [Nilaparvata lugens]

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 115/153 (75%)

Query: 164 TALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIV 223
           T  S VLVDKAGRRILLL+S  VMALCLG LG+YF++ + G+DVS+I  +PL+SV  FIV
Sbjct: 315 TYFSAVLVDKAGRRILLLISSSVMALCLGCLGYYFHLQQKGEDVSNIGMIPLVSVCVFIV 374

Query: 224 MFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWI 283
           +FSLG+GPIPW+M GELF+ ++KG A+ +AV LNW S FI+T  F   +  +G+  TFW 
Sbjct: 375 VFSLGFGPIPWLMTGELFSGDIKGFASSLAVTLNWTSTFILTKTFQSFLTTIGADWTFWA 434

Query: 284 FSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
            + IC VGT+F F+ V ETKGK+L +IQ EL G
Sbjct: 435 LASICSVGTVFVFLFVIETKGKSLEEIQCELAG 467

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708574|ref|XP_003392898.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 121/167 (72%)

Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
           +++I+V +VQ +M+ ++ ++VD+AGR+ LL++S  +M++ L  LG+YF   +DG DVSS+
Sbjct: 297 LASILVALVQLVMSGVAALIVDRAGRKPLLMISTSIMSVSLIALGYYFQQKDDGNDVSSL 356

Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
            +LPL S+I F+V FS+G GP+PWM++GELFA E K  A+ +AV LNW+  FIVT  F  
Sbjct: 357 GWLPLASLIVFMVAFSIGLGPVPWMLMGELFAAETKAVASSVAVMLNWLLVFIVTKTFPM 416

Query: 271 LVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGG 317
           + K LG+  TFWIF+V+    T FT VLVPETKGKT  QI  EL GG
Sbjct: 417 MNKELGTDMTFWIFAVVMACATAFTHVLVPETKGKTYQQIHDELQGG 463

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144544|ref|XP_002013256.1| GL24034 [Drosophila persimilis] gi|198452802|ref|XP_002137541.1| GA26484, isoform A [Drosophila pseudoobscura pseudoobscura] gi|194102199|gb|EDW24242.1| GL24034 [Drosophila persimilis] gi|198132083|gb|EDY68099.1| GA26484, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 149/232 (64%), Gaps = 21/232 (9%)

Query: 90  VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAII----PMFIGEIAE 145
           +L LF+ R   G   G + +I+ MF  + +           G++A+I    P+F  + A 
Sbjct: 296 ILDLFSNR---GARNGLVISILLMFFQQFS-----------GINAVIFYTVPIF--QSAG 339

Query: 146 SSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDG 204
           S++   + +IIVG+VQ IMT  + +L+D+AGR+ILLL S  VM++CL +LG YF M + G
Sbjct: 340 STLDASVCSIIVGVVQVIMTLTASLLIDRAGRKILLLFSSTVMSICLAILGAYFDMKDSG 399

Query: 205 KDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIV 264
           KDVSSI +LPLL V+ F++ FS+GYGPIPW+M+GELF P+VK +A  I V  NW+  FIV
Sbjct: 400 KDVSSIGWLPLLCVVLFMITFSVGYGPIPWLMMGELFLPDVKATAVAITVMANWLCVFIV 459

Query: 265 TLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
           T  F  ++++LGS  TFW F+      T++   ++ ETKGK+ +QIQ  L G
Sbjct: 460 TKSFGTMIESLGSDVTFWFFATCMAAATIYVATMLQETKGKSASQIQSWLNG 511

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178340|ref|XP_003736628.1| GA26484, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859411|gb|EIM52701.1| GA26484, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 149/232 (64%), Gaps = 21/232 (9%)

Query: 90  VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAII----PMFIGEIAE 145
           +L LF+ R   G   G + +I+ MF  + +           G++A+I    P+F  + A 
Sbjct: 302 ILDLFSNR---GARNGLVISILLMFFQQFS-----------GINAVIFYTVPIF--QSAG 345

Query: 146 SSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDG 204
           S++   + +IIVG+VQ IMT  + +L+D+AGR+ILLL S  VM++CL +LG YF M + G
Sbjct: 346 STLDASVCSIIVGVVQVIMTLTASLLIDRAGRKILLLFSSTVMSICLAILGAYFDMKDSG 405

Query: 205 KDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIV 264
           KDVSSI +LPLL V+ F++ FS+GYGPIPW+M+GELF P+VK +A  I V  NW+  FIV
Sbjct: 406 KDVSSIGWLPLLCVVLFMITFSVGYGPIPWLMMGELFLPDVKATAVAITVMANWLCVFIV 465

Query: 265 TLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
           T  F  ++++LGS  TFW F+      T++   ++ ETKGK+ +QIQ  L G
Sbjct: 466 TKSFGTMIESLGSDVTFWFFATCMAAATIYVATMLQETKGKSASQIQSWLNG 517

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619298|gb|EHJ71927.1| hypothetical protein KGM_13187 [Danaus plexippus]

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 119/168 (70%)

Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
           I+ IIVG+VQ I T +S +L++KAGRRILLL S  +M +CL VLG YF + E G +V + 
Sbjct: 332 IATIIVGVVQTIATYISSLLIEKAGRRILLLQSCIIMGICLIVLGTYFKLQESGANVGTF 391

Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
            +LPL+ ++ FIV FSLG+GPIPWMM+ ELFA E +G+ATGIAV  NW   FIVTLCF  
Sbjct: 392 GWLPLVCLVLFIVSFSLGFGPIPWMMMSELFAIEFRGTATGIAVITNWCLVFIVTLCFPL 451

Query: 271 LVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGGK 318
           L   +G  + FW+FS    V   F F L+PETKGKT++QIQ  LGG +
Sbjct: 452 LKDMIGIYSCFWVFSGFMIVCVFFVFFLIPETKGKTVSQIQTILGGKR 499

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745444|ref|XP_001955198.1| GF16361 [Drosophila ananassae] gi|190628235|gb|EDV43759.1| GF16361 [Drosophila ananassae]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 115/166 (69%)

Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
           + +IIVG+VQ IMT  S +L+++AGR++LLL S  VM++CL +LG Y+ M ++ KDVSSI
Sbjct: 349 LCSIIVGVVQVIMTLCSSLLIERAGRKMLLLFSSTVMSICLAILGAYYNMKDNHKDVSSI 408

Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
            +LPL  V FFI+ FS+GYGPIPW+M+GELF P+ KG A  + V  NW+  F+VT CF  
Sbjct: 409 GWLPLFCVAFFIISFSVGYGPIPWLMMGELFLPDAKGKAVSLTVMFNWVCVFVVTKCFGM 468

Query: 271 LVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
           +   LGS  TFW F+    V T++  + V ETKGKT  QIQ  L G
Sbjct: 469 MNTTLGSDITFWFFATWMAVATVYVALAVRETKGKTAGQIQDWLSG 514

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126364|ref|XP_001660877.1| sugar transporter [Aedes aegypti]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 129/191 (67%), Gaps = 7/191 (3%)

Query: 131 GLSAII----PMFIGEIAESSIR-GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDF 185
           G++A+I    P+F  + A S++   I  I+VG+VQ +MT +S VL+DKAGRRILLL S F
Sbjct: 298 GINAVIFYTVPIF--QSAGSTMDPAICGIVVGVVQVLMTFVSSVLIDKAGRRILLLQSSF 355

Query: 186 VMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEV 245
           +M  CL VLG YF +  D  DVS I +LPL SV+ FI+ FSLG+GPIPWMM+GEL AP+V
Sbjct: 356 IMGSCLVVLGVYFKLQNDKADVSGIGWLPLASVVLFIISFSLGFGPIPWMMMGELCAPDV 415

Query: 246 KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK 305
           KG A+ +AV  NW   F+VT  F  + + +GS  TFW F     V T + F+ VPETKGK
Sbjct: 416 KGLASALAVMFNWTLVFLVTKTFGTMQEMIGSDWTFWFFGFWMAVCTFYVFIKVPETKGK 475

Query: 306 TLNQIQRELGG 316
           T  +IQ  LGG
Sbjct: 476 TNAEIQALLGG 486

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391242|ref|XP_002054272.1| GJ22894 [Drosophila virilis] gi|194152358|gb|EDW67792.1| GJ22894 [Drosophila virilis]

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 117/167 (70%)

Query: 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSS 209
            I +IIVG+VQ IMT  S +L+++AGR+ILLL S  VM +CL +LG YF M E GKDV+ 
Sbjct: 341 SICSIIVGVVQVIMTLTSSLLIERAGRKILLLFSSTVMTICLAILGAYFDMKESGKDVTH 400

Query: 210 ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV 269
           I +LPLL ++ FI+ FS+GYGPIPW+M+GELF P+V+ +A  + V  NW+  F+VT CF 
Sbjct: 401 IGWLPLLCMVLFIITFSVGYGPIPWLMMGELFLPDVRATAVSLTVMANWLCVFVVTKCFG 460

Query: 270 FLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316
            ++ + GS  TFW F+    V T++  + V ETKGKT +QIQ  L G
Sbjct: 461 IMITDWGSDMTFWFFAGCMAVATVYVALAVVETKGKTSSQIQTWLSG 507

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428086|ref|XP_002062105.1| GK17357 [Drosophila willistoni] gi|194158190|gb|EDW73091.1| GK17357 [Drosophila willistoni]

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 133/193 (68%), Gaps = 6/193 (3%)

Query: 131 GLSAIIPMFIGEIAESSIRGISA----IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186
           G++A+I  +  +I E +  GIS+    I+VG++Q + T +S ++VDK GRRILLL S  V
Sbjct: 351 GINAVI-FYSKKIFEDANTGISSGMSTILVGVMQVVATFVSTLVVDKLGRRILLLASGIV 409

Query: 187 MALCLGVLGFYFYMMEDGKD-VSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEV 245
           MAL    +G YFY+ +  +D V SI++LP+ S+  FI+MFS+GYGP+PW+M+GELFA ++
Sbjct: 410 MALSTTAIGVYFYLKDQDEDSVESITWLPVASLCVFIIMFSIGYGPVPWLMMGELFATDI 469

Query: 246 KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK 305
           KG A  IA   NW+ AFIVT  F  L  +LG+  TFW+F+ +  +G  F F  VPETKGK
Sbjct: 470 KGFAGSIAGTTNWVLAFIVTKTFTNLNDSLGAGGTFWLFAGLTVIGVFFVFFAVPETKGK 529

Query: 306 TLNQIQRELGGGK 318
           +LN+IQ EL G +
Sbjct: 530 SLNEIQAELAGNR 542

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
FB|FBgn0037386	502	CG1208 [Drosophila melanogaste	0.572	0.362	0.471	4.2e-67
UNIPROTKB|B4KR05	863	Tret1 "Facilitated trehalose t	0.584	0.215	0.444	1.5e-60
UNIPROTKB|B4HNS0	857	Tret1-1 "Facilitated trehalose	0.584	0.217	0.465	2.5e-60
UNIPROTKB|B4LPX5	911	Tret1 "Facilitated trehalose t	0.584	0.204	0.428	2.7e-60
UNIPROTKB|B4J913	929	Tret1 "Facilitated trehalose t	0.584	0.200	0.444	2.8e-60
FB|FBgn0050035	857	Tret1-1 "Trehalose transporter	0.584	0.217	0.465	1.8e-59
UNIPROTKB|B3NSE1	856	Tret1 "Facilitated trehalose t	0.584	0.217	0.460	3.8e-59
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.584	0.359	0.423	6.9e-59
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.584	0.381	0.417	1.1e-58
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.584	0.381	0.423	1.1e-58

FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
 Identities = 90/191 (47%), Positives = 125/191 (65%)

Query:   131 GLSAIIPMFIGEIAESSIR---GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I  F+ EI ESS      +  I+VG+VQ IMT  S +L++KAGR+ILL+ S  +M
Sbjct:   315 GINAVI-FFMNEIFESSSTLNPNVCTIVVGVVQVIMTLASSLLIEKAGRKILLIFSSTIM 373

Query:   188 ALCLGVLGFYFYMMEDGKDVS-SISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVK 246
              +CL +LG Y   +    D+S SI +LPLL ++ FIV FS+GYGPIPWMM+GELF P+VK
Sbjct:   374 TVCLAMLGAY-NTINRHTDLSQSIGWLPLLCIVLFIVSFSVGYGPIPWMMMGELFMPDVK 432

Query:   247 GSATGIAVALNWISAFIVTLCFVFLVKNLGSA-ATFWIFSVICFVGTLFTFVLVPETKGK 305
             G A  ++V +NW+   +VT  ++F V N G A   FW FS    V T +  + + ETKGK
Sbjct:   433 GIAVSLSVMMNWVCVSLVT--WLFGVLNAGGADVPFWFFSAWMGVATAYVAIALQETKGK 490

Query:   306 TLNQIQRELGG 316
             + +QIQ  L G
Sbjct:   491 SASQIQSWLSG 501

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)]

 Score = 434 (157.8 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
 Identities = 84/189 (44%), Positives = 125/189 (66%)

Query:   131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I G +  IIVG+V F+ T ++ VL+D+AGR+ILL +S+  M
Sbjct:   657 GINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRAGRKILLYVSNVAM 716

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L VLG +FY    G D S++ +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   717 ILTLFVLGGFFYCKSTGMDTSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRG 776

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F  ++  +G+   FW+F  ICFVG  F    VPET+GKTL
Sbjct:   777 SAASVATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTL 836

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   837 EDIERKMMG 845

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)]

 Score = 453 (164.5 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
 Identities = 88/189 (46%), Positives = 126/189 (66%)

Query:   131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I G +  IIVGIV F+ T + +VL+D+AGR+ILL +SD  M
Sbjct:   651 GINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAM 710

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L VLG +FY   +G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   711 VLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 770

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F  L   +G+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct:   771 SAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 830

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   831 EDIERKMMG 839

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)]

 Score = 433 (157.5 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
 Identities = 81/189 (42%), Positives = 125/189 (66%)

Query:   131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I G +  IIVG+V F  T ++ +L+D+AGR++LL +S+ +M
Sbjct:   705 GINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRAGRKVLLYVSNVMM 764

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L VLG +FY    G D S++ +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   765 VLTLFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 824

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F  ++  +G+   FW+F  ICF+G  F    VPET+GKTL
Sbjct:   825 SAASVATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGLFFVIFYVPETQGKTL 884

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   885 EDIERKMMG 893

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4J913 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila grimshawi (taxid:7222)]

 Score = 441 (160.3 bits), Expect = 2.8e-60, Sum P(2) = 2.8e-60
 Identities = 84/189 (44%), Positives = 127/189 (67%)

Query:   131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S++ G +  IIVG V FI T + ++L+D+AGR+ILL +S+  M
Sbjct:   723 GINAVIFYTVQIFKDAGSTLDGNVCTIIVGTVNFIATFIGILLIDRAGRKILLYVSNIAM 782

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L VLG +FY   +G DVS++  LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   783 ILTLFVLGGFFYCKANGMDVSNVGLLPLCCFVVYILGFSLGFGPIPWLMMGEILPAKIRG 842

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F+ ++K +G+   FW+F VIC +G  F    VPET+GKTL
Sbjct:   843 SAASVATAFNWTCTFVVTKSFLDMIKLIGAHGAFWLFGVICCIGMFFVIFCVPETQGKTL 902

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   903 EDIERKMMG 911

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)]

 Score = 449 (163.1 bits), Expect = 1.8e-59, Sum P(2) = 1.8e-59
 Identities = 88/189 (46%), Positives = 125/189 (66%)

Query:   131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I G +  IIVGIV F+ T + +VL+D+AGR+ILL +SD  M
Sbjct:   651 GINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAM 710

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L VLG +FY    G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   711 VLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 770

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F  L   +G+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct:   771 SAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 830

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   831 EDIERKMMG 839

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015771 "trehalose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)]

 Score = 446 (162.1 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
 Identities = 87/189 (46%), Positives = 126/189 (66%)

Query:   131 GLSAII--PMFIGEIAESSIRG-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I G I  IIVG+V F+ T + +VL+D+AGR+ILL +S+  M
Sbjct:   650 GINAVIFYTVQIFKDAGSTIDGNICTIIVGVVNFLATFIGIVLIDRAGRKILLYVSNIAM 709

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L VLG +FY    G DVS++ +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   710 ILTLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 769

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F  L   +G+   FW+F  ICFVG  F  + VPET+GKTL
Sbjct:   770 SAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 829

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   830 EDIERKMMG 838

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 431 (156.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 80/189 (42%), Positives = 127/189 (67%)

Query:   131 GLSAII--PMFIGEIAESSI-RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I   +  IIVG+V FI T ++ +L+D+ GR++LL +SD  M
Sbjct:   311 GINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAM 370

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              + L  LG +FY+  +G DVS I +LPL S + F++ FSLG+GPIPW+M+GE+   +++G
Sbjct:   371 IITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRG 430

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
             SA  +A A NW   F+VT  F  ++ ++G+   FW+F  +C VG +F  + VPET+GK+L
Sbjct:   431 SAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSL 490

Query:   308 NQIQRELGG 316
               I+R++ G
Sbjct:   491 EDIERKMCG 499

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 425 (154.7 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 79/189 (41%), Positives = 121/189 (64%)

Query:   131 GLSAII--PMFIGEIAESSI-RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I   +S IIVG+V F  T + ++L+D+ GR+ILL +SD  M
Sbjct:   283 GINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAM 342

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              + L +LG +FY    G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   343 IVTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 402

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
              A  +  A NW   F+VT  F  L   +G+   FW+F  IC VG  F  + VPET+GK+L
Sbjct:   403 PAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSL 462

Query:   308 NQIQRELGG 316
              +I+R++ G
Sbjct:   463 EEIERKMMG 471

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 425 (154.7 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 80/189 (42%), Positives = 121/189 (64%)

Query:   131 GLSAII--PMFIGEIAESSI-RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187
             G++A+I   + I + A S+I   +  IIVGIV F  T + ++L+D+ GR+ILL +SD  M
Sbjct:   283 GINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAM 342

Query:   188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247
              L L +LG +FY    G DVS + +LPL   + +I+ FSLG+GPIPW+M+GE+   +++G
Sbjct:   343 ILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRG 402

Query:   248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307
              A  +  A NW   F+VT  F  L   +G+   FW+F V+C VG  F  + VPET+GK+L
Sbjct:   403 PAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSL 462

Query:   308 NQIQRELGG 316
              +I+R++ G
Sbjct:   463 EEIERKMMG 471

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	318
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-32
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	9e-29
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	5e-26
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-10
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-09
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-07
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-06
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	5e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04
PRK11652	394	PRK11652, emrD, multidrug resistance protein D; Pr	4e-04
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	4e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	7e-04
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.001
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.003
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.004
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	0.004

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  125 bits (315), Expect = 2e-32
 Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
           IIVG V F  T +++ LVD+ GRR LLL+    MA+CL VLG             S   +
Sbjct: 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF-VTGSSKSSGNV 384

Query: 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273
            ++ ++ FI  F++G+GP+PW++V E+F   ++     IAVA NW++ FIV   F  +++
Sbjct: 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444

Query: 274 NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQI 310
           ++G    F  F  +  +G +F +  +PETKG+TL +I
Sbjct: 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  114 bits (288), Expect = 9e-29
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
           IIVG+V F+ T +++ LVD+ GRR LLLL    MA+C  VLG    +            +
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGV-ALLGVAKS--KGAGIV 349

Query: 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273
            ++ ++ FI  F+LG+GP+PW++V ELF   V+  A  IA A NW++ F++   F  +  
Sbjct: 350 AIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITG 409

Query: 274 NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQREL 314
            +G    F +F+ +  +  LF F  VPETKG+TL +I    
Sbjct: 410 AIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  107 bits (268), Expect = 5e-26
 Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 13/168 (7%)

Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
           +  IIVG++    T L+++ VDK GR+ L ++    MA+ +  LG  FY         + 
Sbjct: 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAP 362

Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
             + LLS++F++  F++ +GP+ W+++ E+F   ++G A  IAVA  WI+ + V+  F  
Sbjct: 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPM 422

Query: 271 LVKNLGSAATF------WIFSVICFVGTLFTFVLVPETKGKTLNQIQR 312
           + KN    A F      WI+  +  +  LF +  VPETKGKTL +++ 
Sbjct: 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470

Length = 479

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 38  QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVLMLFA 95
            + LI S+ ++G + G+L AG + D+FGRK  +L   + F+I  +L  FAK  +  ML  
Sbjct: 47  LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIV 106

Query: 96  ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG 130
            R I G+  GG+S ++PM+I EIA   +R  + + 
Sbjct: 107 GRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL 141

Length = 449

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 19/157 (12%)

Query: 167 SVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS 226
           +V LVD  GR+ + L+  F++ +   VLGF +        +S+  FL +  +  F    +
Sbjct: 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY------NHLSTHGFLAIYVLAQF--FAN 406

Query: 227 LGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK----------NLG 276
            G     +++ GE+F    + +A GI+ A     A I    F++L +           + 
Sbjct: 407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466

Query: 277 SAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRE 313
                 IF++  F+G LFT  L+PETKGK+L ++  E
Sbjct: 467 MGHVLEIFALFMFLGILFTL-LIPETKGKSLEELSGE 502

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 38  QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL---MLF 94
              L+ S+  +G   GAL AG ++D+FGRK  +L   + F+I  +L+  A   L   ML 
Sbjct: 72  LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLI 131

Query: 95  AARFIAGVATGGLSAIIPMFIGEIAESSIRA 125
             R + G+  G  SA++PM++ EIA  ++R 
Sbjct: 132 VGRVLLGIGVGIASALVPMYLSEIAPKALRG 162

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 32/96 (33%), Positives = 45/96 (46%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
           +D  Q   + S   IG  FGAL  G +AD+ GR+ V+L   + F +  +L   A NV  L
Sbjct: 49  LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108

Query: 94  FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129
              RF+AG+  GGL   +   + E A    R     
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVG 144

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 27/95 (28%), Positives = 43/95 (45%)

Query: 35  DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF 94
           D  +  L  S   +G + G+   G ++D+FGRK V+L   +   +S VL  F+ N  +  
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184

Query: 95  AARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129
             R + G+  GG+     +   E      RA V T
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGT 219

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 1   ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSI 60
           AL A  IGT       +LP + +    S        G A  + +  A+G   GA     +
Sbjct: 19  ALAAFAIGTTEFVPVGLLPPIAADLGVSE-------GAAGQLITAYALGVALGAPLLALL 71

Query: 61  ADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAE 120
             +  R+ ++L     FI+S +L   A +  +L  AR +AG+A G   +I       +  
Sbjct: 72  TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP 131

Query: 121 SSIRA---GVATGGLSA 134
              R     +   GL+ 
Sbjct: 132 PGKRGRALALVFTGLTL 148

Length = 394

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 12/101 (11%)

Query: 48  IGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV------LILFAKN------VLMLFA 95
           IG I G    G  +++FGR+  +    + F IS +          +        V     
Sbjct: 66  IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125

Query: 96  ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAII 136
            R I G+  G  S + PM+I EIA + IR  + +    AII
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 9/198 (4%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
           +   QA LI S  ++G   G+L AG ++D+FGR+ V+L   + F +  +L+ FA ++ +L
Sbjct: 31  LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90

Query: 94  FAARFIAGVATGGLSAIIPMFIGEIAESSIRA------GVATGGLSAIIPMFIGEIAESS 147
              RF+ G+  G L       I E      R           G  + + P+  G +AES 
Sbjct: 91  LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150

Query: 148 IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDV 207
                 +I+ I+  ++  L + L+      +LL L+ F+++     L  Y  +       
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLL---RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLG 207

Query: 208 SSISFLPLLSVIFFIVMF 225
            S +   LL  +F +   
Sbjct: 208 LSAAEAGLLLSLFGLGGI 225

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 6/144 (4%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
           +   +  L+ +  ++G       AG ++D+FGR+ V+L   + F +  +L+LFA ++ +L
Sbjct: 29  ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88

Query: 94  FAARFIAGVATGGLSAIIPMFIGEIAESSIRA------GVATGGLSAIIPMFIGEIAESS 147
              R + G+  G L       I +      R           G  +A+ P+  G +A   
Sbjct: 89  LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148

Query: 148 IRGISAIIVGIVQFIMTALSVVLV 171
               + +I+ I+  +   L+ +L+
Sbjct: 149 GWRAAFLILAILALLAAVLAALLL 172

Length = 346

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 38  QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAAR 97
           + + + +   IG  FG    G +ADKFGRKP+++   + + +   L   A  V+ML  +R
Sbjct: 54  EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSR 113

Query: 98  FIAGVATGG 106
           FI G+   G
Sbjct: 114 FIVGMGMAG 122

Length = 426

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 54/261 (20%), Positives = 97/261 (37%), Gaps = 35/261 (13%)

Query: 40  SLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-KNVLMLFAARF 98
            L  +   +GA+ G L  G +A+  G + + L   I  ++  +L+LF  + +L+L  A F
Sbjct: 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFF 185

Query: 99  IAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGI 158
           +      GL   +P+++ E+   S                           G+   + G+
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEA-----------------------GLLLSLFGL 222

Query: 159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSV 218
              +   L  +L D+ GRR LLLL   ++A    +L                S   LL  
Sbjct: 223 GGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP-----------SLALLLVA 271

Query: 219 IFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA 278
           +  +        P    +  EL  PE +G+A+G+      +   +  L    L+   G  
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331

Query: 279 ATFWIFSVICFVGTLFTFVLV 299
             F I + +  +  L   +L 
Sbjct: 332 GVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 58  GSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATG 105
           G ++D+ GR+PVIL     FI+  ++ LFA ++ +L AA  I G+ TG
Sbjct: 64  GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111

Length = 394

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 35  DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA--KNVLM 92
           + G  S++  +  I AI GA     +A +FG+K   L   +   I  VL+ F    ++ +
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314

Query: 93  LFAARFIAGVATGGLSAIIPMFIGEIAE 120
                 +AG+  G  + +    + ++ +
Sbjct: 315 FLVLVVLAGIGLGLATLLPWAMLADVVD 342

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 37  GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAA 96
              S   SL   G   G L  G ++D++GRKPV+LA    F +  + +L+ ++   L   
Sbjct: 41  SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVL 100

Query: 97  RFI 99
           RF+
Sbjct: 101 RFV 103

Length = 401

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 44  SLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVA 103
           +  A+G +  +  +G + D+FGRKPV+L     F++S  +   + N+ +L  ARF+ G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 104 TGGLSAIIPMFIGEIAESSIRAGVATGGLSAII 136
                      I +I     R GVA G +SA I
Sbjct: 65  AAFALVAGAALIADIYPPEER-GVALGLMSAGI 96

Length = 141

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 17/70 (24%), Positives = 32/70 (45%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
                  +  +L  +G   G L  G ++D++GR+PV+L     F +S + +  + N+  L
Sbjct: 37  TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96

Query: 94  FAARFIAGVA 103
              RF+    
Sbjct: 97  LVLRFVQAFG 106

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
           +   I G+V+     ++++L+D+ GRR  +  S  +  + L +L F          V   
Sbjct: 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF----------VPVD 408

Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
            +    ++             + ++   EL+   V+    G+   +  + + I++   V+
Sbjct: 409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFLVY 467

Query: 271 LVKNLGSAATFW---IFSVICFVGTLFTFVLVPETKGKTL 307
               LG    F    +F  +  +  + T  L PETKG  L
Sbjct: 468 ----LGEKWLFLPLVLFGGLALLAGILTLFL-PETKGVPL 502

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 14/116 (12%)

Query: 35  DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA----KNV 90
               A L+  L  I        +G+++D+ GR+PV++ F +   +  V +L A     + 
Sbjct: 253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSF 312

Query: 91  LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIR----------AGVATGGLSAII 136
            + F       +  G  +  +  F+ E+  + +R          AG   GG +  I
Sbjct: 313 TLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI 368

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
KOG0569|consensus	485		99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PRK03545	390	putative arabinose transporter; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
KOG0254|consensus	513		99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.94
PRK10091	382	MFS transport protein AraJ; Provisional	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
PRK03699	394	putative transporter; Provisional	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
PRK03893	496	putative sialic acid transporter; Provisional	99.93
PRK15075	434	citrate-proton symporter; Provisional	99.93
KOG0252|consensus	538		99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
PRK10504	471	putative transporter; Provisional	99.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.92
PRK09952	438	shikimate transporter; Provisional	99.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.91
PRK10054	395	putative transporter; Provisional	99.91
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.9
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.89
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
PRK11043	401	putative transporter; Provisional	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.89
TIGR00895	398	2A0115 benzoate transport.	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
KOG1330|consensus	493		99.88
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.88
PRK10133	438	L-fucose transporter; Provisional	99.88
KOG2532|consensus	466		99.87
KOG0253|consensus	528		99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.87
KOG0255|consensus	521		99.87
KOG3764|consensus	464		99.86
PRK09528	420	lacY galactoside permease; Reviewed	99.86
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.85
PRK11010	491	ampG muropeptide transporter; Validated	99.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.83
PRK11902	402	ampG muropeptide transporter; Reviewed	99.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.82
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.82
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.82
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.81
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.8
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.8
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.78
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.78
KOG2504|consensus	509		99.76
KOG2615|consensus	451		99.75
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
TIGR00901	356	2A0125 AmpG-related permease.	99.75
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.72
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.69
PRK09669	444	putative symporter YagG; Provisional	99.69
KOG4686|consensus	459		99.68
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.68
PRK10429	473	melibiose:sodium symporter; Provisional	99.67
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.67
KOG2533|consensus	495		99.66
PRK09848	448	glucuronide transporter; Provisional	99.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.65
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.63
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.63
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.63
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.61
PTZ00207	591	hypothetical protein; Provisional	99.61
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.6
TIGR00805	633	oat sodium-independent organic anion transporter.	99.59
PF13347	428	MFS_2: MFS/sugar transport protein	99.59
COG2211	467	MelB Na+/melibiose symporter and related transport	99.54
PRK11462	460	putative transporter; Provisional	99.54
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.47
TIGR00900	365	2A0121 H+ Antiporter protein.	99.46
PRK10054	395	putative transporter; Provisional	99.45
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.44
PRK10091	382	MFS transport protein AraJ; Provisional	99.42
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.41
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.4
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.38
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.38
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.38
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.37
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.37
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.37
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.36
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.35
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.35
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.35
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.33
KOG1330|consensus	493		99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.31
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.31
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.31
KOG2563|consensus	480		99.3
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.3
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.29
TIGR00895	398	2A0115 benzoate transport.	99.29
PRK10489	417	enterobactin exporter EntS; Provisional	99.29
PRK10504	471	putative transporter; Provisional	99.28
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.28
PRK03699	394	putative transporter; Provisional	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.26
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.26
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.25
PRK05122	399	major facilitator superfamily transporter; Provisi	99.25
PRK11043	401	putative transporter; Provisional	99.25
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.23
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.22
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.22
KOG2325|consensus	488		99.22
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.22
PRK12382	392	putative transporter; Provisional	99.22
PRK03893	496	putative sialic acid transporter; Provisional	99.22
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
PRK15011	393	sugar efflux transporter B; Provisional	99.21
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.2
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.2
PRK09705	393	cynX putative cyanate transporter; Provisional	99.2
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.19
PLN00028	476	nitrate transmembrane transporter; Provisional	99.19
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.19
KOG3762|consensus	618		99.18
KOG3764|consensus	464		99.18
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.17
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.16
PRK09528	420	lacY galactoside permease; Reviewed	99.16
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.16
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.15
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.13
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.12
PRK10642	490	proline/glycine betaine transporter; Provisional	99.12
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.11
TIGR00898	505	2A0119 cation transport protein.	99.1
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.1
PRK03633	381	putative MFS family transporter protein; Provision	99.09
KOG2532|consensus	466		99.08
PRK15075	434	citrate-proton symporter; Provisional	99.08
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.07
TIGR00901	356	2A0125 AmpG-related permease.	99.07
KOG2615|consensus	451		99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.06
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.05
PRK09952	438	shikimate transporter; Provisional	99.05
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.98
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.98
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.97
PRK11902	402	ampG muropeptide transporter; Reviewed	98.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.96
TIGR00805	633	oat sodium-independent organic anion transporter.	98.9
KOG0255|consensus	521		98.9
PRK11010	491	ampG muropeptide transporter; Validated	98.89
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.88
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.87
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.86
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.83
PRK10133	438	L-fucose transporter; Provisional	98.82
KOG0254|consensus	513		98.82
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.82
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.8
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.79
KOG2816|consensus	463		98.76
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.73
KOG0569|consensus	485		98.7
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.7
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.64
PTZ00207	591	hypothetical protein; Provisional	98.63
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.62
KOG2533|consensus	495		98.6
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.6
KOG2504|consensus	509		98.58
KOG4332|consensus	454		98.55
PF13347	428	MFS_2: MFS/sugar transport protein	98.52
KOG3098|consensus	461		98.52
PRK09848	448	glucuronide transporter; Provisional	98.49
COG0477	338	ProP Permeases of the major facilitator superfamil	98.46
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.39
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.35
KOG3626|consensus	735		98.34
PRK09669	444	putative symporter YagG; Provisional	98.33
PRK10429	473	melibiose:sodium symporter; Provisional	98.29
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.28
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.27
KOG4686|consensus	459		98.23
KOG2816|consensus	463		98.23
PF12832	77	MFS_1_like: MFS_1 like family	98.23
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.19
PRK11462	460	putative transporter; Provisional	98.17
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.15
KOG3762|consensus	618		98.15
KOG0253|consensus	528		98.14
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.11
KOG0252|consensus	538		98.1
COG2211	467	MelB Na+/melibiose symporter and related transport	98.05
KOG2325|consensus	488		97.93
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.84
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.76
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.67
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.67
KOG0637|consensus	498		97.5
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.49
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.42
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.39
KOG2563|consensus	480		97.38
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.3
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.16
KOG3574|consensus	510		97.15
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.98
COG0477	338	ProP Permeases of the major facilitator superfamil	96.72
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.72
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.28
KOG3626|consensus	735		95.9
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.71
KOG3810|consensus	433		95.68
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.23
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.31
KOG3098|consensus	461		94.13
PF12832	77	MFS_1_like: MFS_1 like family	94.09
COG3202	509	ATP/ADP translocase [Energy production and convers	94.06
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.86
KOG1237|consensus	571		92.57
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.43
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.33
PRK03612	521	spermidine synthase; Provisional	91.57
PRK03612	521	spermidine synthase; Provisional	90.85
KOG3097|consensus	390		90.01
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.95
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	88.09
KOG1237|consensus	571		87.82
KOG3574|consensus	510		81.56
KOG4332|consensus	454		80.86
KOG1479|consensus	406		80.46

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=2e-29  Score=229.79  Aligned_cols=308  Identities=28%  Similarity=0.490  Sum_probs=230.8

Q ss_pred             cccccccccccccccccccccccccc-cccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTET-SVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIIS   80 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~   80 (318)
                      ++.+..+++.+..++..|.+.+++.+ ...+++.++.+.+++.+.+.++..++++++|+++||+||||+++.+..+..++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~   98 (479)
T PRK10077         19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS   98 (479)
T ss_pred             HHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35677899999999999988887543 23456899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH------------hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh------hhHhHH------
Q psy16658         81 WVLILFA------------KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG------GLSAII------  136 (318)
Q Consensus        81 ~~~~~~~------------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------~~~~~~------  136 (318)
                      .+.++++            +.++.+++.|+++|++.|...+...++++|++|+|+|+++++.      ++..+.      
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~  178 (479)
T PRK10077         99 ALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF  178 (479)
T ss_pred             HHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888763            2356788999999999999999999999999999999998880      000000      


Q ss_pred             -----------------hHHH---------------HHH----------h-----------------------h--c--c
Q psy16658        137 -----------------PMFI---------------GEI----------A-----------------------E--S--S  147 (318)
Q Consensus       137 -----------------p~~~---------------~~~----------~-----------------------~--~--~  147 (318)
                                       +...               +|.          +                       +  +  .
T Consensus       179 ~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (479)
T PRK10077        179 IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGR  258 (479)
T ss_pred             HhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhh
Confidence                             0000               000          0                       0  0  0


Q ss_pred             c--c----------------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh
Q psy16658        148 I--R----------------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRIL  179 (318)
Q Consensus       148 ~--~----------------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  179 (318)
                      +  +                                              +......++...++.++.+++.||+|||+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~  338 (479)
T PRK10077        259 KTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL  338 (479)
T ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            0  0                                              011123445667788999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH
Q psy16658        180 LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI  259 (318)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~  259 (318)
                      +..+..+.+++.+.+.......       ...........+.+.++...+.+..+.++.|.+|+++|+++.|+.+...++
T Consensus       339 ~i~~~~~~~v~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~  411 (479)
T PRK10077        339 QIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI  411 (479)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH
Confidence            9998888888777665432110       112223334444555555555566668899999999999999999999999


Q ss_pred             HHHHHHHHHHHHH------HHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcC
Q psy16658        260 SAFIVTLCFVFLV------KNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG  316 (318)
Q Consensus       260 g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (318)
                      +..+++.+.+.+.      |..+++..+++.+..+.++.++.+.+.||+|+++.+|.++..++
T Consensus       412 g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             HHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence            9999987776554      56777788888888877777777777889998888887776554

>KOG0569|consensus

Probab=99.97  E-value=7.6e-29  Score=218.71  Aligned_cols=311  Identities=30%  Similarity=0.531  Sum_probs=248.7

Q ss_pred             ccccccccccccccccccccccccc-cccCcC--CCCChh----HHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTET-SVLNEP--VDRGQA----SLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCI   75 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~--~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~   75 (318)
                      +++-.|+..+..++-.+.+.+..++ ..+++|  .++++.    +.+.+++.+|.+++++..+.++||+|||..+.++.+
T Consensus        19 gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~   98 (485)
T KOG0569|consen   19 GSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNL   98 (485)
T ss_pred             hchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            4466777777777776655544422 123344  454444    567889999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------
Q psy16658         76 PFIISWVLILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------------  129 (318)
Q Consensus        76 ~~~~~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------  129 (318)
                      +..++.++..++   ++++.++++|++.|+..|........++.|..|++.||....                       
T Consensus        99 l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG  178 (485)
T KOG0569|consen   99 LAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG  178 (485)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC
Confidence            888888777764   789999999999999999999999999999999999997776                       


Q ss_pred             -------hhhHhHHhHHH----------------------------------------------HHHhhc--c--cc---
Q psy16658        130 -------GGLSAIIPMFI----------------------------------------------GEIAES--S--IR---  149 (318)
Q Consensus       130 -------~~~~~~~p~~~----------------------------------------------~~~~~~--~--~~---  149 (318)
                             ......+|.++                                              +|.+++  +  ++   
T Consensus       179 t~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl  258 (485)
T KOG0569|consen  179 TEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISL  258 (485)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcH
Confidence                   11222222222                                              000000  0  00   


Q ss_pred             ------------------------------------------h-------HHHHHHHHHHHHHHHHHHHHhhccCCeehh
Q psy16658        150 ------------------------------------------G-------ISAIIVGIVQFIMTALSVVLVDKAGRRILL  180 (318)
Q Consensus       150 ------------------------------------------g-------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~  180 (318)
                                                                |       +.....+..+.+.++++.++.||.|||+.+
T Consensus       259 ~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl  338 (485)
T KOG0569|consen  259 RQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL  338 (485)
T ss_pred             HHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence                                                      1       777788899999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHH
Q psy16658        181 LLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWIS  260 (318)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g  260 (318)
                      +.+..++.++.+++.......+...  ....+..+.+.+++...++.+.+|+++-+.+|++|++.|.++.++.....+..
T Consensus       339 l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~  416 (485)
T KOG0569|consen  339 LISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLS  416 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence            9999999998888877655544321  12234456778888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcC
Q psy16658        261 AFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG  316 (318)
Q Consensus       261 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (318)
                      +++-......+.+..|. ..|..+.+.+....+..++++||||+|+..|..++.++
T Consensus       417 ~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~  471 (485)
T KOG0569|consen  417 NFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK  471 (485)
T ss_pred             HHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence            99999999999999997 78888999999999999999999999999888877654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4e-29  Score=214.31  Aligned_cols=278  Identities=23%  Similarity=0.288  Sum_probs=221.0

Q ss_pred             cccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW   81 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~   81 (318)
                      ++.|..+..+....+++|++++|       +++|..+.|+..+.|.++..++.++...+.||+.||++++..+.++.+++
T Consensus        20 ~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n   92 (394)
T COG2814          20 LAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN   92 (394)
T ss_pred             HHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            56788899999999999999999       99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------------------------
Q psy16658         82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------------------------  129 (318)
Q Consensus        82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------------------------  129 (318)
                      +++++++||+.++++|++.|++.|..++...++..|..|+++|+++++                                
T Consensus        93 ~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814          93 LLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999                                


Q ss_pred             --hhhHhHHh---HHHH--HHhhcc------------cc--------------------------------------hHH
Q psy16658        130 --GGLSAIIP---MFIG--EIAESS------------IR--------------------------------------GIS  152 (318)
Q Consensus       130 --~~~~~~~p---~~~~--~~~~~~------------~~--------------------------------------g~~  152 (318)
                        .+....+-   ..++  +..++.            ++                                      ++.
T Consensus       173 ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~  252 (394)
T COG2814         173 IAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLV  252 (394)
T ss_pred             HHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHH
Confidence              00000000   0002  111110            00                                      488


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658        153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI  232 (318)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
                      ...+++++++|+.++|++.|| +.|+.+.............+.+.          ..+.+.......++++.........
T Consensus       253 Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~----------~~~~~~~~~~~~~wg~a~~~~~~~~  321 (394)
T COG2814         253 LLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT----------GASPALALALLFLWGFAFSPALQGL  321 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhhhhhhHH
Confidence            899999999999999999999 88888887777777776666553          2233344444444333333322222


Q ss_pred             ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheec
Q psy16658        233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                      . ....+ .-||.+..+.+++....|+|...|..++|.+.|+.|+....++.+.....+..+.....
T Consensus       322 ~-~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         322 Q-TRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             H-HHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 33444 33566899999999999999999999999999999998888888888777766665433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=6.5e-28  Score=214.87  Aligned_cols=276  Identities=17%  Similarity=0.166  Sum_probs=207.3

Q ss_pred             cccccccccccccccccccc-ccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILT-STTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW   81 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~   81 (318)
                      ..+...++.++..|.+|.+. ++       +|.|+.+.|++.+++.++..+++++.|+++||+||||++..+.++.+++.
T Consensus        23 ~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (399)
T PRK05122         23 FTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG   95 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence            34556677788889999754 55       89999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHH--------hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------------------------
Q psy16658         82 VLILFA--------KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------------------------  129 (318)
Q Consensus        82 ~~~~~~--------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------------------------  129 (318)
                      +.+.++        .+++.+++.|+++|++.+...+...+++.|++|+|+|+++++                        
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  175 (399)
T PRK05122         96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG  175 (399)
T ss_pred             HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence            666553        257789999999999999999999999999999999998877                        


Q ss_pred             -----hhhHhHHhHH---H-HHHhh----ccc---------c----------------------------------hHHH
Q psy16658        130 -----GGLSAIIPMF---I-GEIAE----SSI---------R----------------------------------GISA  153 (318)
Q Consensus       130 -----~~~~~~~p~~---~-~~~~~----~~~---------~----------------------------------g~~~  153 (318)
                           .......+.+   . .+..+    +++         +                                  +...
T Consensus       176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (399)
T PRK05122        176 GLAGLGLLIMLLALLGLLLARPRPAVPPVKGERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYAARGWDGAALAL  255 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHH
Confidence                 0000011100   0 10000    000         0                                  2444


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658        154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP  233 (318)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (318)
                      ....++.++++++.+++.||+++|+.+..+.....++...+...           .+.+.......+.+.+.+..++...
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~~~~~~~~~  324 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----------PSPWMALIGAALTGFGFSLVFPALG  324 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHhHHHHHHHHH
Confidence            56677788899999999999999998887777666666555442           1223334444555555554443333


Q ss_pred             eeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        234 WMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                       ....|..|+++|+++.|+.+...++|..+++.+.|.+.|+.|++..+++.+...+++.+....
T Consensus       325 -~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        325 -VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             -HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence             455688899999999999999999999999999999999999999988888777776655554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=1.8e-27  Score=211.32  Aligned_cols=275  Identities=14%  Similarity=0.121  Sum_probs=206.2

Q ss_pred             cccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH
Q psy16658         12 AWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL   91 (318)
Q Consensus        12 ~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~   91 (318)
                      ....+.+|.+.+|       +|+|.++.+++.+.+.+++.+++++.|+++||+||||++..+..+.+++.+.+++++|++
T Consensus        26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~   98 (393)
T PRK09705         26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA   98 (393)
T ss_pred             hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence            5567888999988       999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH----------hhhHhHHhH-----------------------
Q psy16658         92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------GGLSAIIPM-----------------------  138 (318)
Q Consensus        92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------~~~~~~~p~-----------------------  138 (318)
                      .+++.|+++|++.+...+....++.|++| |+|+++++          .+...+.|.                       
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997 77888876          000000010                       


Q ss_pred             --HH---HHH-h--hcc---------cc-------------------------------------hHHHHHHHHHHHHHH
Q psy16658        139 --FI---GEI-A--ESS---------IR-------------------------------------GISAIIVGIVQFIMT  164 (318)
Q Consensus       139 --~~---~~~-~--~~~---------~~-------------------------------------g~~~~~~~~~~~~~~  164 (318)
                        ..   ++. +  +++         ++                                     |....+.++++++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~  257 (393)
T PRK09705        178 FAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGA  257 (393)
T ss_pred             HHHHHHhcCCCccccCCCcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHH
Confidence              00   010 0  000         00                                     477788889999999


Q ss_pred             HHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc-ch
Q psy16658        165 ALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF-AP  243 (318)
Q Consensus       165 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~  243 (318)
                      ++.+++.||.+||+....+..+..++..++...  .        .....  ....+.+.+.+...+... ....+.. |+
T Consensus       258 ~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~--~--------~~~~~--~~~~l~g~g~g~~~~~~~-~~~~~~~~~~  324 (393)
T PRK09705        258 LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL--P--------LQLPV--LWAMVCGLGLGGAFPLCL-LLALDHSVQP  324 (393)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc--c--------chHHH--HHHHHHHHhccchHHHHH-HHHHhhcCCH
Confidence            999999999999998888766666655544321  0        00111  112233333333333222 3334555 56


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658        244 EVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPETKGKTL  307 (318)
Q Consensus       244 ~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (318)
                      ++|++..|+.+...+++..++|.+.|++.|+.| +...+.+....+.+..+..+...||+++++.
T Consensus       325 ~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        325 AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            789999999999999999999999999999987 6666777666666666666666777766543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=1.8e-27  Score=211.34  Aligned_cols=271  Identities=15%  Similarity=0.108  Sum_probs=201.2

Q ss_pred             ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh
Q psy16658          9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK   88 (318)
Q Consensus         9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~   88 (318)
                      .......+.+|.+.+|       +|.|+++.|++.+.+.+++.+++++.|++.||+||||++..+..+..++++.+.+++
T Consensus        23 ~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   95 (390)
T PRK03545         23 TTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW   95 (390)
T ss_pred             hHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334455678888888       999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH----------------------
Q psy16658         89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------------------  140 (318)
Q Consensus        89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------------------  140 (318)
                      |++.+++.|+++|++.+...+...+++.|++|+|+|+++++      .+...+.|.+.                      
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l  175 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALI  175 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHH
Confidence            99999999999999999888999999999999999999988      00000001000                      


Q ss_pred             ---------HHHhhc--c----------cc--------------------------------------hHHHHHHHHHHH
Q psy16658        141 ---------GEIAES--S----------IR--------------------------------------GISAIIVGIVQF  161 (318)
Q Consensus       141 ---------~~~~~~--~----------~~--------------------------------------g~~~~~~~~~~~  161 (318)
                               +|.+++  +          ++                                      |......+++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~  255 (390)
T PRK03545        176 TLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGI  255 (390)
T ss_pred             HHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence                     110000  0          00                                      466677788899


Q ss_pred             HHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc
Q psy16658        162 IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF  241 (318)
Q Consensus       162 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (318)
                      +++++.+++.||+++|+.. .+......+...+...          ..+.+.......+.+.+.... .+.....+.|..
T Consensus       256 ~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~  323 (390)
T PRK03545        256 IGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA----------ANSEWHLSVLSIFWGIAIMCI-GLAMQVKVLKLA  323 (390)
T ss_pred             HHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH----------hchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHhC
Confidence            9999999999999987643 3433333333322221          112233334444444443322 222225556666


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheec
Q psy16658        242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                      | ++|++++|+++...++|..+||.+.|.+.|+.|++..++..+.+.+++.+..+...
T Consensus       324 ~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        324 P-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            5 57899999999999999999999999999999999999888888877776665544

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=3.7e-27  Score=209.51  Aligned_cols=275  Identities=16%  Similarity=0.178  Sum_probs=205.1

Q ss_pred             ccccccccccccccccc-cccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPIL-TSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      +......++..|.+|.+ .+|       +|.|..+.|++.+.+.++..++++++|+++||+||||++..+.+...++.+.
T Consensus        25 ~~~~~~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (392)
T PRK12382         25 FLTYMTVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA   97 (392)
T ss_pred             HHHHHHHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            34445567777888875 455       8999999999999999999999999999999999999999988877766543


Q ss_pred             HHH--------HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------------------
Q psy16658         84 ILF--------AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------------------  129 (318)
Q Consensus        84 ~~~--------~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------------------  129 (318)
                      ...        .++++.+++.|+++|++.+...+...+++.|++|+|+|+++++                          
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (392)
T PRK12382         98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF  177 (392)
T ss_pred             HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            322        3688999999999999999888989999999999999999887                          


Q ss_pred             ---hhhHhHHhHHH----HHHhh---cc---cc-----------------------------------------hHHHHH
Q psy16658        130 ---GGLSAIIPMFI----GEIAE---SS---IR-----------------------------------------GISAII  155 (318)
Q Consensus       130 ---~~~~~~~p~~~----~~~~~---~~---~~-----------------------------------------g~~~~~  155 (318)
                         .......+...    .+.++   ++   ++                                         +.....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (392)
T PRK12382        178 AALALTTMVLPLLAWAFNGTVRKVPAHAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTA  257 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCcccCchHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHhcCCchhHHHHHH
Confidence               01111111110    11110   00   00                                         244455


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      ..++.+++++..|++.||+++||.+..+..+..++..++...           .+.+.......+.+.+.+...+... .
T Consensus       258 ~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~-~  325 (392)
T PRK12382        258 FGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----------PTAWVALAGAALTGAGCSLIFPALG-V  325 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHHHHHhHHHHHH-H
Confidence            666778889999999999999999888877777666554431           1223334444455555444333333 5


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      ...|..|+++|+++.|+.+...+++..++|.+.|.+.|+.||+..+.+.+...++..++.+..
T Consensus       326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            667889999999999999999999999999999999999999999988888777766655543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=1.2e-26  Score=211.03  Aligned_cols=303  Identities=31%  Similarity=0.558  Sum_probs=226.1

Q ss_pred             ccccccccccccccccccccccccc-ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETS-VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      .++.+++.+...+.+|.+..+.+.. ..+.+.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  116 (481)
T TIGR00879        37 GLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAI  116 (481)
T ss_pred             HHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            4556777788888888887773321 112235589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh---hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh----------------
Q psy16658         83 LILFAK---NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP----------------  137 (318)
Q Consensus        83 ~~~~~~---s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p----------------  137 (318)
                      ++.+.+   +++.+++.|+++|++.+...+...+++.|++|+++|+++++      .++..+.|                
T Consensus       117 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~  196 (481)
T TIGR00879       117 LMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR  196 (481)
T ss_pred             HHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence            886643   45689999999999999999999999999999999998877      00000000                


Q ss_pred             ---------HHH--------HH------------H-----hh------------c-------------------------
Q psy16658        138 ---------MFI--------GE------------I-----AE------------S-------------------------  146 (318)
Q Consensus       138 ---------~~~--------~~------------~-----~~------------~-------------------------  146 (318)
                               .+.        +|            .     ++            +                         
T Consensus       197 ~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (481)
T TIGR00879       197 IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFS  276 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHh
Confidence                     000        00            0     00            0                         


Q ss_pred             --c--cc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhh
Q psy16658        147 --S--IR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSD  184 (318)
Q Consensus       147 --~--~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  184 (318)
                        +  .+                                      +.......+..+++.++.+++.||++||+.+..+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  356 (481)
T TIGR00879       277 STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA  356 (481)
T ss_pred             cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence              0  01                                      24556677788899999999999999999998887


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHH
Q psy16658        185 FVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIV  264 (318)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~  264 (318)
                      ....++...+...........+ ....+.......+...++..+..+....++.|.+|+++|+++.++.+...+++.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~  435 (481)
T TIGR00879       357 AGMAICLFVLGILGASFVTGSS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV  435 (481)
T ss_pred             HHHHHHHHHHHHHhhcccCCcc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776666543222111100 011233344445555566666667776787999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658        265 TLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL  307 (318)
Q Consensus       265 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (318)
                      |.+.+.+.++.+++..|++.++++++..+..++..+|+++++.
T Consensus       436 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence            9999999999999888998888888888877777787776554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=4.1e-26  Score=209.42  Aligned_cols=273  Identities=21%  Similarity=0.342  Sum_probs=203.8

Q ss_pred             cccccccccccccccCcCCC---CChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16658         16 PVLPILTSTTETSVLNEPVD---RGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLM   92 (318)
Q Consensus        16 ~~lp~~~~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~   92 (318)
                      +..|.+.+|       ++++   +.+.++..+++.++..++.+++|+++||+|||++++++.++..++.++.+++++++.
T Consensus       110 ~~~~~i~~e-------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  182 (505)
T TIGR00898       110 TFSSTIVTE-------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV  182 (505)
T ss_pred             cccccEEEE-------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            455666666       8888   899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH-------------------hHHH-------
Q psy16658         93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII-------------------PMFI-------  140 (318)
Q Consensus        93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~-------------------p~~~-------  140 (318)
                      +++.|++.|++.+...+...+++.|++|+++|++..+      .++....                   |.++       
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998777      0000000                   0000       


Q ss_pred             -HH-----------------------------------H--hh----cc----------cc-------------------
Q psy16658        141 -GE-----------------------------------I--AE----SS----------IR-------------------  149 (318)
Q Consensus       141 -~~-----------------------------------~--~~----~~----------~~-------------------  149 (318)
                       +|                                   .  ++    ++          ++                   
T Consensus       263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (505)
T TIGR00898       263 VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS  342 (505)
T ss_pred             cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence             00                                   0  00    00          00                   


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658        150 ---------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP  214 (318)
Q Consensus       150 ---------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (318)
                                     .....+.++..+++.++.+++.||+|||+.+..+.++.+++++.+....         ....+..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~  413 (505)
T TIGR00898       343 YYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---------VDLYFLR  413 (505)
T ss_pred             HHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---------CCchHHH
Confidence                           1334455677788899999999999999999988887777766655421         1111222


Q ss_pred             HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q psy16658        215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLF  294 (318)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  294 (318)
                      .....+...+....+ +..+.+..|.+|++.|+++.|+.+....+|+.++|.+.+ + +..++...+.++++..+++.++
T Consensus       414 ~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       414 TALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence            333333333333333 344478899999999999999999999999999999998 4 4455556777777777766555


Q ss_pred             hheeccCCCCCCHH
Q psy16658        295 TFVLVPETKGKTLN  308 (318)
Q Consensus       295 ~~~~~~~~~~~~~~  308 (318)
                      .+ ++||+++++.+
T Consensus       491 ~~-~lpet~~~~l~  503 (505)
T TIGR00898       491 TL-FLPETKGVPLP  503 (505)
T ss_pred             HH-cCcCCCCCCCC
Confidence            44 56888876654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.95  E-value=6.3e-27  Score=212.49  Aligned_cols=271  Identities=14%  Similarity=0.038  Sum_probs=194.1

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH---
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF---   86 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---   86 (318)
                      +....++.+|.+.+|       +|++..+.|++.+.+.+++.+++++.|+++||+||||++..+.+++++..+..++   
T Consensus        44 ~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~  116 (467)
T PRK09556         44 IRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLG  116 (467)
T ss_pred             HhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHh
Confidence            444556778888888       9999999999999999999999999999999999999999988888887776665   


Q ss_pred             --HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------hhhH---------------hHH
Q psy16658         87 --AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------GGLS---------------AII  136 (318)
Q Consensus        87 --~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------~~~~---------------~~~  136 (318)
                        +++++.+++.|+++|++.+...|...+++.||+|+++|+++++             ....               ...
T Consensus       117 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~  196 (467)
T PRK09556        117 SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIF  196 (467)
T ss_pred             cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHH
Confidence              5899999999999999999999999999999999999998887             0000               000


Q ss_pred             ----------hHHH-----HHH----------------hh----c-c-------------cc------------------
Q psy16658        137 ----------PMFI-----GEI----------------AE----S-S-------------IR------------------  149 (318)
Q Consensus       137 ----------p~~~-----~~~----------------~~----~-~-------------~~------------------  149 (318)
                                +...     +|.                ++    + +             ++                  
T Consensus       197 ~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  276 (467)
T PRK09556        197 PSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIG  276 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence                      0000     110                00    0 0             00                  


Q ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcc
Q psy16658        150 --------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSS  209 (318)
Q Consensus       150 --------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (318)
                                          +.......++..++.++.|+++||++||+.+.........+...+...   .      ..
T Consensus       277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~------~~  347 (467)
T PRK09556        277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---H------AT  347 (467)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---h------cC
Confidence                                355566778889999999999999999987765443333222211111   0      11


Q ss_pred             cchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH------------Hhc
Q psy16658        210 ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVK------------NLG  276 (318)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~------------~~g  276 (318)
                      +.+.......+.+.......... .....|.+|++.|+++.|+.+...++ |..++|.+.|.+.|            ..|
T Consensus       348 ~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~  426 (467)
T PRK09556        348 SEYMYLASLFALGFLVFGPQLLI-GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG  426 (467)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHH-HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC
Confidence            12222233333332221111111 14456999999999999999999997 77999999999999            578


Q ss_pred             hhhHHHHHHHHHHHHHHHhhe
Q psy16658        277 SAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      |+..|++..+..+++.+..+.
T Consensus       427 ~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        427 WAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            988998887777766555443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=1.8e-26  Score=207.37  Aligned_cols=260  Identities=20%  Similarity=0.253  Sum_probs=193.6

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +..+++.....+.+|.+.++       +|.++.+.+++.+.+.++..++++++|+++||+|||+++.++..+.+++.+.+
T Consensus        28 ~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~  100 (426)
T PRK12307         28 VFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS  100 (426)
T ss_pred             HHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34566677777888888888       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH----------------------
Q psy16658         85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII----------------------  136 (318)
Q Consensus        85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~----------------------  136 (318)
                      +++++++.+++.|+++|++.+...+....++.|++|+|+|+++.+      .++..+.                      
T Consensus       101 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        101 GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877      0000000                      


Q ss_pred             hHHH--------HHH----h----hcc-------------------cc--------------------------------
Q psy16658        137 PMFI--------GEI----A----ESS-------------------IR--------------------------------  149 (318)
Q Consensus       137 p~~~--------~~~----~----~~~-------------------~~--------------------------------  149 (318)
                      +.+.        +|.    +    +++                   ++                                
T Consensus       181 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (426)
T PRK12307        181 PVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG  260 (426)
T ss_pred             HHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000        000    0    000                   00                                


Q ss_pred             --------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHH
Q psy16658        150 --------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFF  221 (318)
Q Consensus       150 --------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (318)
                              +.......++.++++++.+++.||++||+.+..+.....+....+...   .      .. ... .....++
T Consensus       261 ~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~------~~-~~~-~~~~~~~  329 (426)
T PRK12307        261 EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI---P------QD-NYL-LLGACLF  329 (426)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---c------cc-cHH-HHHHHHH
Confidence                    234455667788889999999999999998887766655544333221   0      01 111 1222222


Q ss_pred             HHHH-HhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q psy16658        222 IVMF-SLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFW  282 (318)
Q Consensus       222 ~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  282 (318)
                      +... ..+..+....++.|.+|+++|++++|+.+....+++.++|.+.|.+.++.|+....+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            2221 112223333667899999999999999999999999999999999999988654433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=2.3e-27  Score=211.75  Aligned_cols=274  Identities=19%  Similarity=0.188  Sum_probs=202.9

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .++.+++.....+..|.+.++       ++.++++.+++.+.+.++..++.++.|+++||+||||++..+..+..++.+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (406)
T PRK11551         24 ALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLA   96 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            344566666777788888888       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hh-----------------------h--
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GG-----------------------L--  132 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~-----------------------~--  132 (318)
                      +.++++++.+++.|+++|++.+...+...+++.|++|+|+|+++++      .+                       .  
T Consensus        97 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  176 (406)
T PRK11551         97 TAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG  176 (406)
T ss_pred             HHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887      00                       0  


Q ss_pred             ---HhHHhHH---HHHH----hh----ccc-------------c------------------------------------
Q psy16658        133 ---SAIIPMF---IGEI----AE----SSI-------------R------------------------------------  149 (318)
Q Consensus       133 ---~~~~p~~---~~~~----~~----~~~-------------~------------------------------------  149 (318)
                         ....+..   .+|.    ++    +++             +                                    
T Consensus       177 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~  256 (406)
T PRK11551        177 VGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQ  256 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence               0000000   0110    00    000             0                                    


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        150 -GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       150 -g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                       |.......++.++++++.|++.||++||+.+..+.....++...+...           ...+.......+.+..... 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~-  324 (406)
T PRK11551        257 AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----------PSFAGMLLAGFAAGLFVVG-  324 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHHHh-
Confidence             366667778889999999999999999998887655555554443321           1122223333333333332 


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhh
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ..+...++..|.+|+++|+++.|+.+...+++..++|.+.|.+.++.+ +...+.......+++.+..+
T Consensus       325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            233344777899999999999999999999999999999999998754 44444444444444444443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=1.2e-26  Score=216.91  Aligned_cols=119  Identities=20%  Similarity=0.288  Sum_probs=110.2

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+..+++.....+++|.+.++       ++++..+.+++.+++.++.+++.+++|+++||+|||++++++.++.++++++
T Consensus       176 ~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll  248 (742)
T TIGR01299       176 LMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFF  248 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            344566666778888988888       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      ++++++++.+++.|+++|++.++..+...+++.|++|+++|++.++
T Consensus       249 ~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g  294 (742)
T TIGR01299       249 SSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLS  294 (742)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998776

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=2.6e-26  Score=210.21  Aligned_cols=300  Identities=27%  Similarity=0.337  Sum_probs=216.2

Q ss_pred             cccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW   81 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~   81 (318)
                      ++.+..+++.+..+.++|.+..+..  ..+.+.++.+.+++.+.+.++..++.+++|+++||+|||+++.++.++..++.
T Consensus        23 ~~~~~~g~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~  100 (502)
T TIGR00887        23 VGFFTDSYDLFCISLVTKMLGYVYY--HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIAT  100 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3456788888888888887765421  11245667788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh------HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhH--------
Q psy16658         82 VLILFAKN------VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLS--------  133 (318)
Q Consensus        82 ~~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~--------  133 (318)
                      ++++++++      ++.+++.|+++|++.|...+....++.|++|+|+|+++++              .+..        
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~  180 (502)
T TIGR00887       101 VASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH  180 (502)
T ss_pred             HHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998866      7899999999999999999999999999999999999888              0000        


Q ss_pred             -----------------------------hHHhHHH--------------------H-HH-h----------------h-
Q psy16658        134 -----------------------------AIIPMFI--------------------G-EI-A----------------E-  145 (318)
Q Consensus       134 -----------------------------~~~p~~~--------------------~-~~-~----------------~-  145 (318)
                                                   ..+|.++                    + |. +                + 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  260 (502)
T TIGR00887       181 SLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEV  260 (502)
T ss_pred             ccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccc
Confidence                                         0011111                    0 10 0                0 


Q ss_pred             -------ccc--------------c--------------------h-------------H-------------------H
Q psy16658        146 -------SSI--------------R--------------------G-------------I-------------------S  152 (318)
Q Consensus       146 -------~~~--------------~--------------------g-------------~-------------------~  152 (318)
                             +..              +                    |             .                   .
T Consensus       261 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~  340 (502)
T TIGR00887       261 EKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGN  340 (502)
T ss_pred             cchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHH
Confidence                   000              0                    0             0                   0


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658        153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI  232 (318)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
                      ..+..++.+++.++.+++.||+|||+.+..+..++.+++.++........      ..  .......+....+..+..+.
T Consensus       341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~  412 (502)
T TIGR00887       341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------TH--GFLAIYVLAQFFANFGPNAT  412 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc------hh--HHHHHHHHHHHHHhcCCCch
Confidence            01111233446677889999999999988887777777666654321100      00  11222222233344556667


Q ss_pred             ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------chhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL----------GSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.|..          ++...+.+++++++++.+. .+++||+
T Consensus       413 ~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt  491 (502)
T TIGR00887       413 TFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPET  491 (502)
T ss_pred             hhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccC
Confidence            7788899999999999999999999999999999999998843          3455778888777776554 4667999


Q ss_pred             CCCCHHHHHH
Q psy16658        303 KGKTLNQIQR  312 (318)
Q Consensus       303 ~~~~~~~~~~  312 (318)
                      ++++.+|.++
T Consensus       492 ~~~~leei~~  501 (502)
T TIGR00887       492 KGKSLEELSG  501 (502)
T ss_pred             CCCCHHhhhC
Confidence            9988877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=1.5e-26  Score=203.98  Aligned_cols=261  Identities=18%  Similarity=0.162  Sum_probs=198.8

Q ss_pred             ccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16658         13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLM   92 (318)
Q Consensus        13 ~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~   92 (318)
                      ...+.+|.+.++       +|+++++.|++.+.+.++..++++++|+++||+|||+++..+..+..++.+.++++++++.
T Consensus        21 ~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~   93 (377)
T TIGR00890        21 TWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA   93 (377)
T ss_pred             hhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence            346778888888       8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH-hH---------------------------
Q psy16658         93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII-PM---------------------------  138 (318)
Q Consensus        93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~-p~---------------------------  138 (318)
                      +++.|++.|++.+..++.....+.|++| |+|+++.+      .+...+. |.                           
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  172 (377)
T TIGR00890        94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL  172 (377)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888888999987 56888777      0000000 00                           


Q ss_pred             -H--HHHHhh-----c--------------ccc-------------------------------------hHHHHHHHHH
Q psy16658        139 -F--IGEIAE-----S--------------SIR-------------------------------------GISAIIVGIV  159 (318)
Q Consensus       139 -~--~~~~~~-----~--------------~~~-------------------------------------g~~~~~~~~~  159 (318)
                       .  .++.++     +              +++                                     +....+..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (377)
T TIGR00890       173 GAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF  252 (377)
T ss_pred             HHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             0  011000     0              000                                     3566677888


Q ss_pred             HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecc
Q psy16658        160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGE  239 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (318)
                      ..+++++.+++.||++||+.+..+.....++...+....         ............+.+...+....... .+..|
T Consensus       253 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~  322 (377)
T TIGR00890       253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP---------MLNDVLFLATVALVFFTWGGTISLFP-SLVSD  322 (377)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc---------cchhHHHHHHHHHHHHHhccchhccH-HHHHH
Confidence            889999999999999999998888777777665554320         01111122223333333333333333 67789


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q psy16658        240 LFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVG  291 (318)
Q Consensus       240 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  291 (318)
                      .+|+++|+++.|+.+....+|..++|.+.|.+.|+.||+..+.+.+.+.+++
T Consensus       323 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       323 IFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988888776665554

>KOG0254|consensus

Probab=99.95  E-value=3.2e-25  Score=203.26  Aligned_cols=312  Identities=32%  Similarity=0.597  Sum_probs=246.0

Q ss_pred             cccccccc--ccccccccccccccccccccCcCCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHH
Q psy16658          3 GAVTIGTG--LAWTSPVLPILTSTTETSVLNEPVDR--GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFI   78 (318)
Q Consensus         3 ~~~~~~~~--~~~~~~~lp~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~   78 (318)
                      +.+..|++  .+...++.+.+.++.....  ...+.  ++.+|+.+...++..+++++.|+++|++|||+.++++.++..
T Consensus        53 ~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~  130 (513)
T KOG0254|consen   53 GGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFL  130 (513)
T ss_pred             HHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34556665  6777888887777632111  12222  466999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------------
Q psy16658         79 ISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------------------  129 (318)
Q Consensus        79 ~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------  129 (318)
                      ++.+++++++|++.++++|+++|+|.|......+.+++|..|++.||...+                             
T Consensus       131 iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~  210 (513)
T KOG0254|consen  131 IGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRI  210 (513)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHH
Confidence            999999999999999999999999999999999999999999999998877                             


Q ss_pred             hhhHhHHhHHH-------------------------------------------HHHh----------hcc---------
Q psy16658        130 GGLSAIIPMFI-------------------------------------------GEIA----------ESS---------  147 (318)
Q Consensus       130 ~~~~~~~p~~~-------------------------------------------~~~~----------~~~---------  147 (318)
                      ......+|.++                                           ++.+          +++         
T Consensus       211 ~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  290 (513)
T KOG0254|consen  211 PLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSP  290 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCc
Confidence            00111111111                                           0000          000         


Q ss_pred             -cc--------------------------------h------HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHH
Q psy16658        148 -IR--------------------------------G------ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMA  188 (318)
Q Consensus       148 -~~--------------------------------g------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~  188 (318)
                       .+                                |      ....+.++.+.++..++.++.||+|||+.+..+...+.
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~  370 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMS  370 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence             00                                1      34566777788888898999999999999999999999


Q ss_pred             HHHHHHHHhhhhccCCC-CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16658        189 LCLGVLGFYFYMMEDGK-DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLC  267 (318)
Q Consensus       189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~  267 (318)
                      ++.++++.......... ......+..+...+++...+..+..+++|.+..|.+|.+.|+++.++....++..+.+-...
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~  450 (513)
T KOG0254|consen  371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF  450 (513)
T ss_pred             HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence            99998887655543322 23455677788888888899999999999999999999999999999999999988877777


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHH-HhheeccCCCCCCHHHHHHHhcC
Q psy16658        268 FVFLVKNLGSAATFWIFSVICFVGTL-FTFVLVPETKGKTLNQIQRELGG  316 (318)
Q Consensus       268 ~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  316 (318)
                      ...+.+..+....|..+...+.+... ..+++.||+|+++.+|.++.+++
T Consensus       451 ~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  451 FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            77676665534677777777777777 78888999999999998887654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.95  E-value=5.1e-26  Score=201.42  Aligned_cols=271  Identities=16%  Similarity=0.163  Sum_probs=206.3

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      +.++.+...+...+.+|.+.++       +|.|+.+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++..
T Consensus        14 ~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633         14 GLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888889999999998       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------------------------------
Q psy16658         83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------------------------------  129 (318)
Q Consensus        83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------------------------------  129 (318)
                      .+++++|++.+++.|+++|++.+...+...+.+.|..++++|+++++                                 
T Consensus        87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  166 (381)
T PRK03633         87 GLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTG  166 (381)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            99999999999999999999999988888888889999999999887                                 


Q ss_pred             hhhHhHHhHHHHHHhh----c----c------cc-------------------------------------hHHHHHHHH
Q psy16658        130 GGLSAIIPMFIGEIAE----S----S------IR-------------------------------------GISAIIVGI  158 (318)
Q Consensus       130 ~~~~~~~p~~~~~~~~----~----~------~~-------------------------------------g~~~~~~~~  158 (318)
                      .......+......++    +    +      ++                                     |.......+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~  246 (381)
T PRK03633        167 LVLAAILPLLFTRILNQQAENHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVS  246 (381)
T ss_pred             HHHHHHHHHHHhcccCCCCCCCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            0000111111100000    0    0      00                                     456667778


Q ss_pred             HHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658        159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG  238 (318)
Q Consensus       159 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (318)
                      ..+++++..|++.||+++|+.+..+.....++...+..              .........+.+..... ..|.......
T Consensus       247 ~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~g~~~~~-~~p~~~~~~~  311 (381)
T PRK03633        247 AGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS--------------QAAMAPALFILGAAGFT-LYPVAMAWAC  311 (381)
T ss_pred             HHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence            88899999999999999999888776666655443321              00111222333333222 2333436667


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHh
Q psy16658        239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFT  295 (318)
Q Consensus       239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  295 (318)
                      |..|+++++...+..+...++|..++|.+.|.+.|+.+++..|.+.+.+.++..+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        312 EKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            888888888888888888999999999999999999999888888777776554433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.94  E-value=7.7e-26  Score=197.37  Aligned_cols=274  Identities=24%  Similarity=0.375  Sum_probs=221.8

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+....+.....+.+|.+.++       ++.++.+.+++.+...++..++.+++|+++||+||||.+..+..+..++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           8 FFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            345566677778888888887       7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------------
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-----------------  140 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-----------------  140 (318)
                      ..+.++++.+.+.|++.|++.+...+...+++.|++|+|+|++.++      .++....|.+.                 
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888      00000001000                 


Q ss_pred             --------------------------------------HHHhh------cccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy16658        141 --------------------------------------GEIAE------SSIRGISAIIVGIVQFIMTALSVVLVDKAGR  176 (318)
Q Consensus       141 --------------------------------------~~~~~------~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~  176 (318)
                                                            +...+      +.+.+.......+...++.++.+++.||++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  240 (352)
T cd06174         161 ILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR  240 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                                  11111      1122678888899999999999999999999


Q ss_pred             ee-hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHH
Q psy16658        177 RI-LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVA  255 (318)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  255 (318)
                      |+ .+..+.....++.......           .+.+.......+.+.+.+.... ....+..|..|+++|++..|+.+.
T Consensus       241 ~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  308 (352)
T cd06174         241 RRLLLLIGLLLAALGLLLLALA-----------PSLALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNT  308 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHH
Confidence            99 8888888877777766652           2233445555555555555444 444888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        256 LNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       256 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ..+++..++|.+.+.+.|..+++..+.+.+...++..+..+
T Consensus       309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999888888777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.94  E-value=2.1e-26  Score=203.87  Aligned_cols=279  Identities=16%  Similarity=0.194  Sum_probs=201.4

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      +.+..+.......+.+|.+.+|       +|.+.++.|++.+.+.++..++++++|+++||+|||+++..+..+.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091         11 GTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            3456677777888999999988       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh------hhHhHHh-------------------
Q psy16658         83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG------GLSAIIP-------------------  137 (318)
Q Consensus        83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------~~~~~~p-------------------  137 (318)
                      ++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++.      +...+.|                   
T Consensus        84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~  163 (382)
T PRK10091         84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI  163 (382)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence            999999999999999999999999888888999999999999887760      0000000                   


Q ss_pred             ----------HH--HHHHhhc-------------ccc-------------------------------------hHHHHH
Q psy16658        138 ----------MF--IGEIAES-------------SIR-------------------------------------GISAII  155 (318)
Q Consensus       138 ----------~~--~~~~~~~-------------~~~-------------------------------------g~~~~~  155 (318)
                                ..  .+|.+++             +++                                     +.....
T Consensus       164 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  243 (382)
T PRK10091        164 AVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMML  243 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence                      00  0111000             000                                     466777


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      ..++.++++++.+++.||+++|+.+..+..+.+++.+++....          ...+.......+.+.+......+....
T Consensus       244 ~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~  313 (382)
T PRK10091        244 VGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG----------GMKTASLIFAFICCAGLFALSAPLQIL  313 (382)
T ss_pred             HHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            8888999999999999999999988887776666655443320          111222333333333322222322323


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      ...+..|++.++.+  ..+...++|..++|.+.|.+.|+ .+|+..+.+.+.++.+.........+
T Consensus       314 ~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        314 LLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             HHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            33444455555544  34677889999999999999996 57888888776666555544444333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=3.6e-26  Score=208.61  Aligned_cols=286  Identities=16%  Similarity=0.155  Sum_probs=192.2

Q ss_pred             cccccccccccccccccccccccccccccCcCCCCCh-hHH-----HHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQ-ASL-----IGSLIAIGAIFGALPAGSIADKFGRKPVILAFCI   75 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~-~g~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~   75 (318)
                      ++.++.+++.+......|.+.++       +..+.++ .++     +.++..+++.+++++.|+++||+|||+++.++.+
T Consensus        23 ~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         23 LGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            34567788888888888988887       4322221 122     2577889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHH--------HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH----------hhhHhH--
Q psy16658         76 PFIISWVLILFAKNVLM--------LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------GGLSAI--  135 (318)
Q Consensus        76 ~~~~~~~~~~~~~s~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------~~~~~~--  135 (318)
                      +++++++++++++|++.        +++.|+++|++.|..++...+++.|++|+|+|++..+          .+...+  
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875        8899999999999999999999999999999998766          000000  


Q ss_pred             ------------------------HhHHH--------HH------H----hh--c------c----------cc------
Q psy16658        136 ------------------------IPMFI--------GE------I----AE--S------S----------IR------  149 (318)
Q Consensus       136 ------------------------~p~~~--------~~------~----~~--~------~----------~~------  149 (318)
                                              .+.+.        +|      .    ++  +      +          ++      
T Consensus       176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (490)
T PRK10642        176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTC  255 (490)
T ss_pred             HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHH
Confidence                                    00000        10      0    00  0      0          00      


Q ss_pred             ---------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHH
Q psy16658        150 ---------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGF  196 (318)
Q Consensus       150 ---------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~  196 (318)
                                                       +.......++..++.++.|+++||+|||+.+..+.....+....+..
T Consensus       256 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  335 (490)
T PRK10642        256 IGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI  335 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence                                             13344556667788889999999999999887765543332222111


Q ss_pred             hhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658        197 YFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG  276 (318)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  276 (318)
                      ...        ............+.+...+....... .+..|.+|++.|+++.|..+.....++.++|.+.+.+.+..+
T Consensus       336 ~~~--------~~~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~  406 (490)
T PRK10642        336 LIN--------SNVIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ  406 (490)
T ss_pred             HHh--------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            100        11112222233333333333333333 566789999999999998777788888999999999988755


Q ss_pred             -hhhHHHHHHHHHHHHHHHhheeccCCCC
Q psy16658        277 -SAATFWIFSVICFVGTLFTFVLVPETKG  304 (318)
Q Consensus       277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (318)
                       ++..++.....+++..+..+ +.||+++
T Consensus       407 ~~~~~~~~~~~~~~i~~~~~~-~~pes~~  434 (490)
T PRK10642        407 NLMMPAYYLMVVAVIGLITGV-TMKETAN  434 (490)
T ss_pred             CchHHHHHHHHHHHHHHHHHH-HhccccC
Confidence             44444444444444444333 3466544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=8.9e-26  Score=201.19  Aligned_cols=261  Identities=18%  Similarity=0.177  Sum_probs=196.1

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+..+++.....+..|.+.++       +|.++.+.+++.+.+.++..++.++.|.++||+|||+++..+..+.+++.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~   93 (405)
T TIGR00891        21 WLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLA   93 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345566777778888888888       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH------------------------
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS------------------------  133 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~------------------------  133 (318)
                      ++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.+      .+..                        
T Consensus        94 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~  173 (405)
T TIGR00891        94 CGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI  173 (405)
T ss_pred             HHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence            9999999999999999999999999999999999999999998888      0000                        


Q ss_pred             hHHhHHH--------HH------H-hhc-------------c----c----------------c----------------
Q psy16658        134 AIIPMFI--------GE------I-AES-------------S----I----------------R----------------  149 (318)
Q Consensus       134 ~~~p~~~--------~~------~-~~~-------------~----~----------------~----------------  149 (318)
                      ...+.+.        +|      . +++             +    +                +                
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (405)
T TIGR00891       174 SILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLY  253 (405)
T ss_pred             HHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            0000000        00      0 000             0    0                0                


Q ss_pred             -----------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCC
Q psy16658        150 -----------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKD  206 (318)
Q Consensus       150 -----------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (318)
                                             +.......++.++++++.+++.||++||+.+..+.....+........         
T Consensus       254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------  324 (405)
T TIGR00891       254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI---------  324 (405)
T ss_pred             HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh---------
Confidence                                   355566778888999999999999999998887765543322222111         


Q ss_pred             CcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHH
Q psy16658        207 VSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFW  282 (318)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~  282 (318)
                       ....+.......+.+........ ....++.|..|+++|+++.|+.+...+++..++|.+.|.+.|+.| |+..+.
T Consensus       325 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~  399 (405)
T TIGR00891       325 -GANVAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA  399 (405)
T ss_pred             -CCchHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence             01122222222333333333333 333777899999999999999999999999999999999999988 655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=4.7e-26  Score=204.02  Aligned_cols=293  Identities=15%  Similarity=0.118  Sum_probs=216.2

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +...+..+...+.+|.+.++       ++.++.+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++....
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         27 FISIFGLGLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHH
Confidence            34445566677788888877       77799999999999999999999999999999999999999888877776655


Q ss_pred             HH-----HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-------------
Q psy16658         85 LF-----AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-------------  140 (318)
Q Consensus        85 ~~-----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-------------  140 (318)
                      ..     .++++.+++.|+++|++.+...+...+++.|++|+++|+++.+      .+...+.|.+.             
T Consensus       100 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~  179 (417)
T PRK10489        100 ALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNY  179 (417)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHH
Confidence            43     4678999999999999988888999999999999999988777      00000000000             


Q ss_pred             -----------------HHHhh----c---------------ccc-----------------------------------
Q psy16658        141 -----------------GEIAE----S---------------SIR-----------------------------------  149 (318)
Q Consensus       141 -----------------~~~~~----~---------------~~~-----------------------------------  149 (318)
                                       ++.++    +               +++                                   
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~  259 (417)
T PRK10489        180 GLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAA  259 (417)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChh
Confidence                             11000    0               001                                   


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHh
Q psy16658        150 --GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSL  227 (318)
Q Consensus       150 --g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (318)
                        |.......++.+++.++.+++.||.++++.+..+..+..++.+++...           .+.+.......+.+.+.+.
T Consensus       260 ~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~  328 (417)
T PRK10489        260 QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----------PMWILAVLCLALFGYLSAI  328 (417)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHH
Confidence              466677788888999999999999777777777766655555444331           1122333344444443333


Q ss_pred             cccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658        228 GYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL  307 (318)
Q Consensus       228 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (318)
                       ..+...+++.|..|++.|++++|+.+...++|..++|.+.|.+.|..|+...+...+.+..+...+.....+++|+++.
T Consensus       329 -~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (417)
T PRK10489        329 -SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQ  407 (417)
T ss_pred             -HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccc
Confidence             2333447778999999999999999999999999999999999999998888888877777766666666788888777


Q ss_pred             HHHHHHhcC
Q psy16658        308 NQIQRELGG  316 (318)
Q Consensus       308 ~~~~~~~~~  316 (318)
                      +|.|++..+
T Consensus       408 ~~~~~~~~~  416 (417)
T PRK10489        408 TPPEVDASD  416 (417)
T ss_pred             ccccCCCCC
Confidence            776665443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=2.5e-25  Score=200.15  Aligned_cols=278  Identities=13%  Similarity=0.106  Sum_probs=196.2

Q ss_pred             cccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH
Q psy16658         12 AWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL   91 (318)
Q Consensus        12 ~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~   91 (318)
                      ......+|.+.++       +|++.++.|++.+.+.++..+++++.|++.||+|||+++.++.++.+++.++.+++++++
T Consensus        40 ~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
T PRK11663         40 KSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLW  112 (434)
T ss_pred             hhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence            3456778888887       899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------------------------------hhhHh-H-H
Q psy16658         92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------------------------------GGLSA-I-I  136 (318)
Q Consensus        92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------------------------------~~~~~-~-~  136 (318)
                      .+++.|++.|++.|...+...+++.|++|+|+|+++++                                 .+... . .
T Consensus       113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888                                 00000 0 0


Q ss_pred             hHH--HHHH--------------------hh-c----c-----------cc-----------------------------
Q psy16658        137 PMF--IGEI--------------------AE-S----S-----------IR-----------------------------  149 (318)
Q Consensus       137 p~~--~~~~--------------------~~-~----~-----------~~-----------------------------  149 (318)
                      ...  ++|.                    ++ +    +           ++                             
T Consensus       193 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  272 (434)
T PRK11663        193 FLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSE  272 (434)
T ss_pred             HHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000  0100                    00 0    0           01                             


Q ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhh-hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658        150 ---------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLL-LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS  217 (318)
Q Consensus       150 ---------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
                               +.......+++.+++++.|++.||+  ++|+... ............+...  . .      .........
T Consensus       273 ~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~-~------~~~~~~~~~  343 (434)
T PRK11663        273 TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P-F------ASYVMQAAC  343 (434)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c-c------ccHHHHHHH
Confidence                     3455667788899999999999998  3333332 2111111111111111  0 0      011111111


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ....+.+ .............|.+|+++|+++.|+.++..++|..++|.+.|.+.|+.|++..|...+.+.++..+..+.
T Consensus       344 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        344 FFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            1222211 111111222455788999999999999999999999999999999999999999998888887777666655


Q ss_pred             eccCCCCCC
Q psy16658        298 LVPETKGKT  306 (318)
Q Consensus       298 ~~~~~~~~~  306 (318)
                      ..+++++++
T Consensus       423 ~~~~~~~~~  431 (434)
T PRK11663        423 FLNAQAPRE  431 (434)
T ss_pred             HHhhhchhc
Confidence            454444433

>PRK03699 putative transporter; Provisional

Probab=99.94  E-value=7.8e-26  Score=201.07  Aligned_cols=273  Identities=11%  Similarity=0.060  Sum_probs=201.9

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +..+.......+.+|.+.++       +|+|+++.+++.+.+.+++.++.+++|++.||+||||++..+..+..++.+++
T Consensus        17 ~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~   89 (394)
T PRK03699         17 ALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL   89 (394)
T ss_pred             HHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34455556677788888888       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH------------------
Q psy16658         85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------  140 (318)
Q Consensus        85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------  140 (318)
                      .++++++.+++.|+++|++.+...+...+++.|++|+|+|++.++      .+...+.|...                  
T Consensus        90 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~  169 (394)
T PRK03699         90 MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIG  169 (394)
T ss_pred             HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            999999999999999999999999999999999999999988765      01111111110                  


Q ss_pred             ---------------HHHhh----c-c---c----c--------------------------------------hHHHHH
Q psy16658        141 ---------------GEIAE----S-S---I----R--------------------------------------GISAII  155 (318)
Q Consensus       141 ---------------~~~~~----~-~---~----~--------------------------------------g~~~~~  155 (318)
                                     ++.++    + +   +    +                                      |.....
T Consensus       170 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~  249 (394)
T PRK03699        170 LVYVAIFILTLFSEFPALGKHAPKADKPVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSN  249 (394)
T ss_pred             HHHHHHHHHHHhcCCccccccCccccCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHH
Confidence                           11100    0 0   0    0                                      355666


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      ..++..+++++.+++.||+++|+.+.....+..+...++...           .+.+.........+......++... +
T Consensus       250 ~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~~~~~~~~~-~  317 (394)
T PRK03699        250 FWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-----------DDPSHLLYAILGLGFFSSAIYTTII-T  317 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-----------CCchHHHHHHHHHHHHHHHHHHHHH-H
Confidence            778889999999999999999998877665554443333221           1122233333444443333333323 4


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ...|..| +.+++..|......++|..++|.+.|.+.|..|++..++..+.+..++.+....
T Consensus       318 ~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        318 LGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            5556555 346778899999999999999999999999999988888887777766554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=1.8e-25  Score=199.62  Aligned_cols=278  Identities=16%  Similarity=0.175  Sum_probs=204.5

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCCh-----hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQ-----ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF   77 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~   77 (318)
                      +.++.++..+...+.+|.+.++       +|.+..+     .|++.+.+.++..++.+++|+++||+|||+++..+..+.
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   94 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM   94 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence            3456667777888999999888       7777654     488999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH------------
Q psy16658         78 IISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF------------  139 (318)
Q Consensus        78 ~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~------------  139 (318)
                      .++.++..++++++.+++.|++.|++.+ ..+...+++.|++|+++|+++.+      .+...+.|.+            
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  173 (408)
T PRK09874         95 GIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP  173 (408)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            9999999999999999999999999854 56778889999999999998877      0000000000            


Q ss_pred             -------------------HHHH----hh-c------------ccc----------------------------------
Q psy16658        140 -------------------IGEI----AE-S------------SIR----------------------------------  149 (318)
Q Consensus       140 -------------------~~~~----~~-~------------~~~----------------------------------  149 (318)
                                         .+|.    ++ +            +++                                  
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNV  253 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                               0110    00 0            000                                  


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHH
Q psy16658        150 -------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFI  222 (318)
Q Consensus       150 -------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (318)
                             |....+.++...++.+..|++.||++||+.+..+.....++.+.....           ...+.......+.+
T Consensus       254 ~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g  322 (408)
T PRK09874        254 SNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----------QTPLQLGILRFLLG  322 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH
Confidence                   122233445566777788999999999999888776665555443331           12333344444455


Q ss_pred             HHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        223 VMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      .+.+...+... +...+..|+++|++..++.+....+|..++|.+.|.+.++.|++..|.+.+++.++..++.+...+
T Consensus       323 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        323 AADGALLPAVQ-TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             hhhHhhHHHHH-HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444333333 566677888999999999999999999999999999999999999999888888877766655443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.4e-26  Score=192.10  Aligned_cols=272  Identities=17%  Similarity=0.164  Sum_probs=204.3

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML   93 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l   93 (318)
                      .+..+|.+.+|       .++|.+|.|++.+++.+.+.++..+.|.++||.++|+.+..++++.++.++++++++|.+.+
T Consensus        48 F~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~  120 (448)
T COG2271          48 FNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLF  120 (448)
T ss_pred             HhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHH
Confidence            45567888888       88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH---------------------hHHH------
Q psy16658         94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII---------------------PMFI------  140 (318)
Q Consensus        94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~---------------------p~~~------  140 (318)
                      .+..++.|..+|.-.|.+...+..|+|++|||+..+      .++.++.                     |.+.      
T Consensus       121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival  200 (448)
T COG2271         121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL  200 (448)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888      1111111                     1111      


Q ss_pred             -------------------------HHH-hh-ccc----------------c----------------------------
Q psy16658        141 -------------------------GEI-AE-SSI----------------R----------------------------  149 (318)
Q Consensus       141 -------------------------~~~-~~-~~~----------------~----------------------------  149 (318)
                                               .|. ++ +++                +                            
T Consensus       201 ~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~  280 (448)
T COG2271         201 ILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLS  280 (448)
T ss_pred             HHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                                     111 11 110                0                            


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658        150 ----------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS  217 (318)
Q Consensus       150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
                                +....++-.++++|+++.|+++||+  |||....+.+.+....++...+ ..+       ..+.++..++
T Consensus       281 e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w-~~~-------~~~~~l~~~~  352 (448)
T COG2271         281 EVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW-LAP-------NGSYLLDAIL  352 (448)
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-cCC-------CccHHHHHHH
Confidence                      4778888899999999999999995  4555444333222222222211 111       1223333333


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      +...++... +..-+......|..|++..|++.|+...+.++ |...+....|.+.|.+||...|.++.+.++++.++..
T Consensus       353 l~~iGf~Iy-GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         353 LFIIGFLIY-GPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             HHHHHHHHh-hHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            333333322 22223336667999999999999999999999 8899999999999999999999998888888777766


Q ss_pred             eeccC
Q psy16658        297 VLVPE  301 (318)
Q Consensus       297 ~~~~~  301 (318)
                      ...+.
T Consensus       432 ~~~~~  436 (448)
T COG2271         432 PVWNA  436 (448)
T ss_pred             HHHhh
Confidence            65543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=4.9e-25  Score=198.22  Aligned_cols=280  Identities=19%  Similarity=0.193  Sum_probs=177.4

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHH---HHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASL---IGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIIS   80 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~---~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~   80 (318)
                      .++..++........|.+.++++.    .+.+..+.+.   +.+...++..++++++|+++||+||||++..+..+++++
T Consensus        31 ~~~~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         31 NLVEWFDFYVYSFCSLYFAHIFFP----SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            445567777777777888887321    1344554444   344455555599999999999999999999999999999


Q ss_pred             HHHHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------hhhHh----H----
Q psy16658         81 WVLILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------GGLSA----I----  135 (318)
Q Consensus        81 ~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------~~~~~----~----  135 (318)
                      ++++++++++.        .+++.|+++|++.|...+...+++.|++|+|+|++..+         .....    .    
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~  186 (432)
T PRK10406        107 SLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT  186 (432)
T ss_pred             HHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998874        58899999999999999999999999999999998766         00000    0    


Q ss_pred             -------------------HhHHH--------HHH-----hh-cc---------cc------------------------
Q psy16658        136 -------------------IPMFI--------GEI-----AE-SS---------IR------------------------  149 (318)
Q Consensus       136 -------------------~p~~~--------~~~-----~~-~~---------~~------------------------  149 (318)
                                         .+.++        +|.     ++ ++         ++                        
T Consensus       187 ~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  266 (432)
T PRK10406        187 LEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYM  266 (432)
T ss_pred             CCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               00000        110     00 00         00                        


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658        150 ---------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP  214 (318)
Q Consensus       150 ---------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (318)
                                     +....+..+...++.++.|+++||++||+.+.....+..+....+....  ..     ....+..
T Consensus       267 p~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~  339 (432)
T PRK10406        267 QKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--QN-----VSSPYAA  339 (432)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--Hc-----CCcHHHH
Confidence                           2444555666777888899999999999887665444332222111100  00     0111111


Q ss_pred             HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHH
Q psy16658        215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGT  292 (318)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~  292 (318)
                      .....+....... ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+.+ +..| +...+...+...++..
T Consensus       340 ~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        340 FGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Confidence            1111111122222 1223336778999999999999999988775 344577777744 6556 4334444444445444


Q ss_pred             HHhh
Q psy16658        293 LFTF  296 (318)
Q Consensus       293 ~~~~  296 (318)
                      +..+
T Consensus       418 ~~~~  421 (432)
T PRK10406        418 LVSL  421 (432)
T ss_pred             HHHH
Confidence            4433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=7.1e-25  Score=194.32  Aligned_cols=277  Identities=21%  Similarity=0.241  Sum_probs=199.2

Q ss_pred             ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658          7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF   86 (318)
Q Consensus         7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~   86 (318)
                      ..++........|.+.++       +|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++..+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   78 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF   78 (399)
T ss_pred             HHHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH
Confidence            344556666777887777       8999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH---------------------
Q psy16658         87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF---------------------  139 (318)
Q Consensus        87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~---------------------  139 (318)
                      +++++.+++.|+++|++.+...+...+++.|++|+|+|++.++      .+...+.|.+                     
T Consensus        79 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  158 (399)
T TIGR00893        79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLG  158 (399)
T ss_pred             HcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888      0000000000                     


Q ss_pred             --------H--H-----------HHhh----c----------------------ccc-----------------------
Q psy16658        140 --------I--G-----------EIAE----S----------------------SIR-----------------------  149 (318)
Q Consensus       140 --------~--~-----------~~~~----~----------------------~~~-----------------------  149 (318)
                              .  +           +.++    +                      +++                       
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T TIGR00893       159 IIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF  238 (399)
T ss_pred             HHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                    0  0           0000    0                      000                       


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhh-hhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658        150 ---------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLL-SDFVMALCLGVLGFYFYMMEDGKDVSSISFL  213 (318)
Q Consensus       150 ---------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (318)
                                     +.......+.+.++.++.+++.||++||+.... .......+.............    ....+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  314 (399)
T TIGR00893       239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY----VNIPYA  314 (399)
T ss_pred             HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc----chhHHH
Confidence                           356677778888999999999999998862211 111111111111111111110    011122


Q ss_pred             HHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHH
Q psy16658        214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGT  292 (318)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~  292 (318)
                       ............ +..+..+.+..|..|+++|+++.|+.+...+++..++|.+.|.+.|..| ++..+.+.+...+++.
T Consensus       315 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  392 (399)
T TIGR00893       315 -ALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA  392 (399)
T ss_pred             -HHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence             222222222222 2455566888999999999999999999999999999999999999988 8888887777766655


Q ss_pred             HHhh
Q psy16658        293 LFTF  296 (318)
Q Consensus       293 ~~~~  296 (318)
                      +..+
T Consensus       393 ~~~~  396 (399)
T TIGR00893       393 LSYL  396 (399)
T ss_pred             HHHH
Confidence            5443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.93  E-value=2.7e-25  Score=203.53  Aligned_cols=268  Identities=17%  Similarity=0.179  Sum_probs=198.6

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .++.+++.....+.+|.+.++       +|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  101 (496)
T PRK03893         29 YLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA  101 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            345566777778888988888       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhh----------------------HhH
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGL----------------------SAI  135 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~----------------------~~~  135 (318)
                      .+++++++.+++.|++.|++.+...+...+++.|++|+|+|+++++      .+.                      ...
T Consensus       102 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~  181 (496)
T PRK03893        102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI  181 (496)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998877      000                      000


Q ss_pred             HhHHH--------HH-----Hh--hc------------------------------------------------------
Q psy16658        136 IPMFI--------GE-----IA--ES------------------------------------------------------  146 (318)
Q Consensus       136 ~p~~~--------~~-----~~--~~------------------------------------------------------  146 (318)
                      .+...        +|     .+  ++                                                      
T Consensus       182 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (496)
T PRK03893        182 LPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAI  261 (496)
T ss_pred             HHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence            11100        00     00  00                                                      


Q ss_pred             ------------------------------------------cc-------chHHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658        147 ------------------------------------------SI-------RGISAIIVGIVQFIMTALSVVLVDKAGRR  177 (318)
Q Consensus       147 ------------------------------------------~~-------~g~~~~~~~~~~~~~~~~~g~l~d~~g~~  177 (318)
                                                                +.       -|.......++.++++++.|++.||++||
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~  341 (496)
T PRK03893        262 FISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR  341 (496)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence                                                      00       03555666777888999999999999999


Q ss_pred             ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHH
Q psy16658        178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALN  257 (318)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  257 (318)
                      +.+..+..+..+..+.+...    .     ....+.........+ ....+..+....++.|.+|+++|++++|+.+...
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  411 (496)
T PRK03893        342 KAYVCSLLISQLLIIPVFAI----G-----GANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVG  411 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhhc----c-----ccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhh
Confidence            98877655544443322221    0     111111112222222 2222223333367789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q psy16658        258 WISAFIVTLCFVFLVKNLGSAATFWIFSVIC  288 (318)
Q Consensus       258 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  288 (318)
                      .+|..++|.+.|.+.|+.|++..+...+...
T Consensus       412 ~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        412 ALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             hHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            9999999999999999999877765554433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.93  E-value=7.6e-25  Score=197.12  Aligned_cols=262  Identities=15%  Similarity=0.168  Sum_probs=178.8

Q ss_pred             cccccccccccccccccccccccccccccCcCCCCChhHHHH-HHH-----HHHHhhhhhhhhhhhhhhcchhHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIG-SLI-----AIGAIFGALPAGSIADKFGRKPVILAFCI   75 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~   75 (318)
                      ++.++..++....++..|.+.+|       ++.++.+.+... +..     .+...+++++.|+++||+||||+++.+..
T Consensus        22 ~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         22 SGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            35567778888888999999888       788777765443 222     22234788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh--------------hhH
Q psy16658         76 PFIISWVLILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG--------------GLS  133 (318)
Q Consensus        76 ~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~--------------~~~  133 (318)
                      ++.+++.+++++++++        .+++.|+++|++.+...+....++.|++|+|+|++.++.              +..
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987        468899999999999999999999999999999988860              000


Q ss_pred             hH------------------------HhHHH------HHH----hh--c-----------ccc-----------------
Q psy16658        134 AI------------------------IPMFI------GEI----AE--S-----------SIR-----------------  149 (318)
Q Consensus       134 ~~------------------------~p~~~------~~~----~~--~-----------~~~-----------------  149 (318)
                      .+                        .+...      +|.    ++  +           +++                 
T Consensus       175 ~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
T PRK15075        175 LLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTVSF  254 (434)
T ss_pred             HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            00                        00000      110    00  0           000                 


Q ss_pred             ----------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCC
Q psy16658        150 ----------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDV  207 (318)
Q Consensus       150 ----------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (318)
                                            +....+..++++++.++.|+++||++||+.+..+...............  ...    
T Consensus       255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~----  328 (434)
T PRK15075        255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL--VAA----  328 (434)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HcC----
Confidence                                  2455566777888999999999999999987765443322111111110  000    


Q ss_pred             cccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchh
Q psy16658        208 SSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLGSA  278 (318)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~  278 (318)
                       ...........+.+...+. ..+..+.+..|.+|++.|+++.++.+..... ++.++|.+.+.+.|+.|++
T Consensus       329 -~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        329 -PSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             -CchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence             1111111222222233332 2233336678999999999999997766665 5888999999999998853

>KOG0252|consensus

Probab=99.93  E-value=8.5e-26  Score=192.84  Aligned_cols=304  Identities=25%  Similarity=0.324  Sum_probs=233.9

Q ss_pred             ccccccccccccccccccccccccc-cccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTET-SVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW   81 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~   81 (318)
                      +-|..+++...++.+.|.+...+.. ...+-+.++...+.+..+..+|.++++++.|+++||+|||+++...++++.+++
T Consensus        49 GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t  128 (538)
T KOG0252|consen   49 GFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICS  128 (538)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHH
Confidence            4577889999999999888776522 111233667777899999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-------hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------
Q psy16658         82 VLILFAK-------NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------  129 (318)
Q Consensus        82 ~~~~~~~-------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------  129 (318)
                      +++++..       -..++...|++.|+|.|+.+|...++.+|...+++||...+                         
T Consensus       129 ~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe  208 (538)
T KOG0252|consen  129 ALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE  208 (538)
T ss_pred             HHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence            9888752       24788899999999999999999999999999999997776                         


Q ss_pred             ------------------hhhHhHHhHHH--------------H-----H-------Hhhc--------c----------
Q psy16658        130 ------------------GGLSAIIPMFI--------------G-----E-------IAES--------S----------  147 (318)
Q Consensus       130 ------------------~~~~~~~p~~~--------------~-----~-------~~~~--------~----------  147 (318)
                                        .+....+|.+.              +     +       .+++        +          
T Consensus       209 ~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~  288 (538)
T KOG0252|consen  209 KIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPS  288 (538)
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcc
Confidence                              33333333333              0     0       0000        0          


Q ss_pred             cc--------------------------------------------h----------------HHHHHHHHHHHHHHHHH
Q psy16658        148 IR--------------------------------------------G----------------ISAIIVGIVQFIMTALS  167 (318)
Q Consensus       148 ~~--------------------------------------------g----------------~~~~~~~~~~~~~~~~~  167 (318)
                      ++                                            |                ....+.....++|..+.
T Consensus       289 ~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~t  368 (538)
T KOG0252|consen  289 NSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFT  368 (538)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEE
Confidence            00                                            0                11222223333466666


Q ss_pred             HHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658        168 VVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG  247 (318)
Q Consensus       168 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~  247 (318)
                      .++.|++|||+....++.++.+..+.+.......       ....-..+...+..++...+.+.....+.+|.+|++.|+
T Consensus       369 v~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~-------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~  441 (538)
T KOG0252|consen  369 VYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL-------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS  441 (538)
T ss_pred             EEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc-------cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence            7789999999999999999998888887754321       112233556666677777778888889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-----HhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHh
Q psy16658        248 SATGIAVALNWISAFIVTLCFVFLVK-----NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQREL  314 (318)
Q Consensus       248 ~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (318)
                      +..|+..+.+-.|.+++......+.+     ..|.+..+++++.++.+..+..+ ++||+++++.+|.+.+.
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE  512 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence            99999999999999999999999999     67889999999999888766554 46799999988776544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=5.1e-25  Score=196.76  Aligned_cols=262  Identities=15%  Similarity=0.132  Sum_probs=188.3

Q ss_pred             ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658          7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF   86 (318)
Q Consensus         7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~   86 (318)
                      ..++....+...|.+.+|       +|++.++.|++.+.+.+++.+++++.|++.||+||||++..+.++.+++++++++
T Consensus        20 ~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~   92 (412)
T TIGR02332        20 SFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF   92 (412)
T ss_pred             HHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            345556666777877777       9999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhH-------------------------
Q psy16658         87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAI-------------------------  135 (318)
Q Consensus        87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~-------------------------  135 (318)
                      ++|++.+++.|+++|++.+...|....++.|++|+|+|+++++      .+...+                         
T Consensus        93 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~  172 (412)
T TIGR02332        93 ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL  172 (412)
T ss_pred             hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence            9999999999999999999999999999999999999999888      000000                         


Q ss_pred             ---HhHHH---------HHH----------hh-----------------c----c-----c--------c----------
Q psy16658        136 ---IPMFI---------GEI----------AE-----------------S----S-----I--------R----------  149 (318)
Q Consensus       136 ---~p~~~---------~~~----------~~-----------------~----~-----~--------~----------  149 (318)
                         .+.+.         +|.          ++                 +    +     +        +          
T Consensus       173 ~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
T TIGR02332       173 LEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYF  252 (412)
T ss_pred             HHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHH
Confidence               00000         110          00                 0    0     0        0          


Q ss_pred             -----------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehh-hhhhHHHHHHHHHHHHhhh
Q psy16658        150 -----------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILL-LLSDFVMALCLGVLGFYFY  199 (318)
Q Consensus       150 -----------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~  199 (318)
                                                   +.......++..++.++.|+++||+++|+.. ........+.. .+...  
T Consensus       253 ~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~--  329 (412)
T TIGR02332       253 CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA--  329 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh--
Confidence                                         3455667788888999999999999977753 33322322222 11111  


Q ss_pred             hccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hh
Q psy16658        200 MMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SA  278 (318)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~  278 (318)
                        .     .. .........+...+... ..+..+....|.+|+++|+++.|+.+...++|++++|.+.|.+.|+.| |+
T Consensus       330 --~-----~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~  400 (412)
T TIGR02332       330 --T-----DH-NLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFN  400 (412)
T ss_pred             --c-----CC-HHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCc
Confidence              0     01 11111112222222111 122233555678999999999999999999999999999999999875 87


Q ss_pred             hHHHHHHHH
Q psy16658        279 ATFWIFSVI  287 (318)
Q Consensus       279 ~~~~~~~~~  287 (318)
                      ..+++.++.
T Consensus       401 ~~~~~~~~~  409 (412)
T TIGR02332       401 SGLWFVAAL  409 (412)
T ss_pred             hhHHHHHHH
Confidence            777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=6.4e-25  Score=192.81  Aligned_cols=256  Identities=16%  Similarity=0.110  Sum_probs=199.6

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      +.++..++.+...+.+|.+..+       ++.++.+.+++.+.+.++..++.+++|+++||+||||++..+..+..++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVA   79 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHH
Confidence            3455667777888888998888       889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-----hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------
Q psy16658         83 LILFAK-----NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-----------  140 (318)
Q Consensus        83 ~~~~~~-----s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-----------  140 (318)
                      +..+++     +++.+++.|+++|++.+...+...+++.|++|+++|++.++      .+...+.|.+.           
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~  159 (365)
T TIGR00900        80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW  159 (365)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            888888     99999999999999999999999999999999999999888      00000000000           


Q ss_pred             ---------------------HHHhh---c------------------ccc-----------------------------
Q psy16658        141 ---------------------GEIAE---S------------------SIR-----------------------------  149 (318)
Q Consensus       141 ---------------------~~~~~---~------------------~~~-----------------------------  149 (318)
                                           +|.++   +                  +++                             
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (365)
T TIGR00900       160 AIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQS  239 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence                                 11000   0                  011                             


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHH
Q psy16658        150 ----------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVI  219 (318)
Q Consensus       150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (318)
                                |.......++..++.++.+++.||.+||+.+..+....+++...+...          ..+.+.......
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  309 (365)
T TIGR00900       240 KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT----------PPNFPLFLVLWF  309 (365)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----------chhHHHHHHHHH
Confidence                      466677788888999999999999999998887766666655554432          011334444555


Q ss_pred             HHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658        220 FFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG  276 (318)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  276 (318)
                      +.+.+.+.... ....+..|..|+++|+++.|+.+...+++..++|.+.|.+.|+.|
T Consensus       310 ~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       310 AIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55555554433 343778899999999999999999999999999999999998754

>PRK10504 putative transporter; Provisional

Probab=99.92  E-value=3e-24  Score=195.42  Aligned_cols=260  Identities=13%  Similarity=0.125  Sum_probs=196.0

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      +.++..++....++.+|.+.++       +|.++.+.+++.+.+.++..++.+++|+++||+||||+++.+..+.+++.+
T Consensus        18 ~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         18 GFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            3455666777778889999888       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH----------------
Q psy16658         83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------------  140 (318)
Q Consensus        83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------------  140 (318)
                      .+.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.+      .+...+.|.+.                
T Consensus        91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            99999999999999999999999999999999999999999988876      00000000000                


Q ss_pred             ---------------H----------------------------------------------------------HHhhc-
Q psy16658        141 ---------------G----------------------------------------------------------EIAES-  146 (318)
Q Consensus       141 ---------------~----------------------------------------------------------~~~~~-  146 (318)
                                     +                                                          |.+++ 
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (471)
T PRK10504        171 IPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR  250 (471)
T ss_pred             HHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                           0                                                          00000 


Q ss_pred             --------ccc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehh
Q psy16658        147 --------SIR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILL  180 (318)
Q Consensus       147 --------~~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~  180 (318)
                              +|+                                      |+......+...++.++.+++.||+++|+.+
T Consensus       251 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~  330 (471)
T PRK10504        251 ALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL  330 (471)
T ss_pred             CccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence                    011                                      3555556666777778899999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHH
Q psy16658        181 LLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWIS  260 (318)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g  260 (318)
                      ..+..+..+...++.....        ....+.......+.+.+.+....+.. ....+..|++.++++.|+.++...+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g  401 (471)
T PRK10504        331 VATTLGLALVSLLFMLVAL--------LGWYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNSLLSMIMQLS  401 (471)
T ss_pred             HHHHHHHHHHHHHHHhccc--------cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHHHHHHHHHHH
Confidence            8887766666555443210        11122222233344444444444444 66678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchh
Q psy16658        261 AFIVTLCFVFLVKNLGSA  278 (318)
Q Consensus       261 ~~~~~~~~g~l~~~~g~~  278 (318)
                      ..+++.+.|.+.+..|+.
T Consensus       402 ~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        402 MSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999998887653

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.92  E-value=6.6e-29  Score=224.73  Aligned_cols=311  Identities=35%  Similarity=0.634  Sum_probs=231.4

Q ss_pred             cccccccccccccccccccccccccccccCc----CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNE----PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF   77 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~   77 (318)
                      ++.+..|++.+......+..........++.    +.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            3456677777777666655552211111111    113456789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh---hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------
Q psy16658         78 IISWVLILFAK---NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------  129 (318)
Q Consensus        78 ~~~~~~~~~~~---s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------  129 (318)
                      .+++++.++++   +++.+.++|+++|++.|...+....++.|..|+++|++...                         
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  166 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD  166 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   99999999999999999999999999999999999987777                         


Q ss_pred             ------hhhHhHHhHHH--------H------------------------------H-------Hhhcc-----------
Q psy16658        130 ------GGLSAIIPMFI--------G------------------------------E-------IAESS-----------  147 (318)
Q Consensus       130 ------~~~~~~~p~~~--------~------------------------------~-------~~~~~-----------  147 (318)
                            .......|.+.        +                              |       .++++           
T Consensus       167 ~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  246 (451)
T PF00083_consen  167 NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFR  246 (451)
T ss_pred             cccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence                  00011111111        0                              0       00000           


Q ss_pred             --c---c------------------------------h-----HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHH
Q psy16658        148 --I---R------------------------------G-----ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM  187 (318)
Q Consensus       148 --~---~------------------------------g-----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  187 (318)
                        +   +                              |     .......+...++.++..++.||+|||+.+..+...+
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~  326 (451)
T PF00083_consen  247 NKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLM  326 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              0   0                              1     3334555667777788889999999999999988888


Q ss_pred             HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16658        188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLC  267 (318)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~  267 (318)
                      +++...+........+.+  .......+....+....+..+..+..+.+..|.+|++.|+++.|+....+++++.+.+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~  404 (451)
T PF00083_consen  327 AICSLILGIIFFLGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL  404 (451)
T ss_pred             cccccccccccccccccc--cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            877776651111111110  111233344444555566667788888999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHh
Q psy16658        268 FVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQREL  314 (318)
Q Consensus       268 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (318)
                      .+.+.+..+....+.+.++++.+..+..+++.|||++++.+|.++++
T Consensus       405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            99888887745678888888888888888999999999999988763

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09952 shikimate transporter; Provisional

Probab=99.92  E-value=7.8e-24  Score=190.63  Aligned_cols=281  Identities=17%  Similarity=0.176  Sum_probs=181.1

Q ss_pred             ccccccccccccccccc-cccccccccCc-CCCCChhHHHH-----HHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPIL-TSTTETSVLNE-PVDRGQASLIG-----SLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF   77 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~-~~~~~~~~~~~-~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~   77 (318)
                      +...++......+.|.+ .+++      + +.++. .+++.     ++..++..+++++.|+++||+|||+++..+..++
T Consensus        32 ~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~  104 (438)
T PRK09952         32 VVDWYDFLLYGITAALVFNREF------FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMM  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc------CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            34455555555555543 3331      2 44544 45543     3455667789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------h-hhH----hH
Q psy16658         78 IISWVLILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------G-GLS----AI  135 (318)
Q Consensus        78 ~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------~-~~~----~~  135 (318)
                      ++++++++++++++        .+++.|+++|++.|...+....++.|++|+|+|++..+         . +..    .+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        105 GIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987        58889999999999999999999999999999987766         0 000    00


Q ss_pred             ---------------HhHHH---------------HH------Hh-h--c---c---------cc---------------
Q psy16658        136 ---------------IPMFI---------------GE------IA-E--S---S---------IR---------------  149 (318)
Q Consensus       136 ---------------~p~~~---------------~~------~~-~--~---~---------~~---------------  149 (318)
                                     .++..               +|      .+ +  +   +         ++               
T Consensus       185 ~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  264 (438)
T PRK09952        185 SMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELL  264 (438)
T ss_pred             HHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHH
Confidence                           00000               11      00 0  0   0         00               


Q ss_pred             -----------------h-------HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCC
Q psy16658        150 -----------------G-------ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK  205 (318)
Q Consensus       150 -----------------g-------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (318)
                                       |       ......+....++.++.|+++||++||+.+..+.++..++...+.....  .   
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~---  339 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--A---  339 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--c---
Confidence                             0       1222344555667778899999999999888776554443322222110  0   


Q ss_pred             CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--chhhHHH
Q psy16658        206 DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNW-ISAFIVTLCFVFLVKNL--GSAATFW  282 (318)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~--g~~~~~~  282 (318)
                        ....+.......+.+...+..... .+++..|.+|++.|+++.|+.+.... +++.++|.+.+.+.|..  +|...+.
T Consensus       340 --~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~  416 (438)
T PRK09952        340 --QSIFWIVFFSIMLANIAHDMVVCV-QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI  416 (438)
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence              011122222233333333333333 34778899999999999999777655 78999999999999864  3555565


Q ss_pred             HHHHHHHHHHHHhheeccC
Q psy16658        283 IFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~  301 (318)
                      ..+...+++.+..+ ..++
T Consensus       417 ~~~~~~~i~~v~~~-~~~~  434 (438)
T PRK09952        417 YLLAGCLISAMTAL-LMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHH-Hccc
Confidence            55555555544443 3444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.92  E-value=1.1e-23  Score=186.75  Aligned_cols=276  Identities=17%  Similarity=0.175  Sum_probs=198.3

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-----h
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-----K   88 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~   88 (318)
                      .+|+.+.+.++      |+++|++|.+++.+++.+++.+..++.|++.||+|+|+++.++.++.++.++..+++     +
T Consensus        53 ~~~l~~~~~~~------~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~  126 (462)
T PRK15034         53 FSAVTVNLNKI------GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT  126 (462)
T ss_pred             HHHHHHHhhhh------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            34555555542      299999999999999999999999999999999999999999999999999999987     8


Q ss_pred             hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH----------hhhHhHHhH--------------------
Q psy16658         89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------GGLSAIIPM--------------------  138 (318)
Q Consensus        89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------~~~~~~~p~--------------------  138 (318)
                      |++.+++.|++.|++ +..++.....+++|+|+|+||++++          .+...+.|.                    
T Consensus       127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g  205 (462)
T PRK15034        127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG  205 (462)
T ss_pred             CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            999999999999998 7788999999999999999999888          100111111                    


Q ss_pred             ---------------HH----------HHHh-hcc----------cc-----------------h---------------
Q psy16658        139 ---------------FI----------GEIA-ESS----------IR-----------------G---------------  150 (318)
Q Consensus       139 ---------------~~----------~~~~-~~~----------~~-----------------g---------------  150 (318)
                                     .+          ++.+ ++.          ++                 |               
T Consensus       206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~  285 (462)
T PRK15034        206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPD  285 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence                           10          1100 000          00                 0               


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658        151 ----ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS  226 (318)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (318)
                          ....+..+...+.++++|+++||+|+||++..++..+.++...+.... +..    ...+.+.............+
T Consensus       286 ~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l-p~~----~~~~~~~~~~~~~~l~~~~G  360 (462)
T PRK15034        286 VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL-PGT----GSGNFIAFYAVFMGLFLTAG  360 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-ccc----cccHHHHHHHHHHHHHHHhc
Confidence                112334566778889999999999999999988877666654433221 110    01122222333333334444


Q ss_pred             hcccccceeeeccccch---------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHH
Q psy16658        227 LGYGPIPWMMVGELFAP---------------------EVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIF  284 (318)
Q Consensus       227 ~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~  284 (318)
                      .+...+. .++.+.+|+                     ++-|.+.|+....+.+|+++-|.+.|...+..| +...++.+
T Consensus       361 ~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~  439 (462)
T PRK15034        361 LGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVF  439 (462)
T ss_pred             ccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHH
Confidence            4444444 566666664                     156889999999999999999999999988866 67778888


Q ss_pred             HHHHHHHHHHhheeccCC
Q psy16658        285 SVICFVGTLFTFVLVPET  302 (318)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~  302 (318)
                      .+...++..+.+.++.|+
T Consensus       440 ~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        440 LIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            888888888777665443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=7.5e-24  Score=188.16  Aligned_cols=261  Identities=18%  Similarity=0.218  Sum_probs=188.8

Q ss_pred             ccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16658         13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLM   92 (318)
Q Consensus        13 ~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~   92 (318)
                      ...+.+|.+.++       +|.++++.++..+.+.++..+++++.|++.||+||||++..+..+.+++.+.+.++++++.
T Consensus        38 ~~~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  110 (394)
T PRK10213         38 LPVSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSL  110 (394)
T ss_pred             HHHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence            445567888777       9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH----------------------------
Q psy16658         93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM----------------------------  138 (318)
Q Consensus        93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~----------------------------  138 (318)
                      +++.|+++|++.+...+...+++.|++|+|+|+++.+      .+...+.|.                            
T Consensus       111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888      000000000                            


Q ss_pred             HH---HHHhhcc------------cc--------------------------------------hHHHHHHHHHHHHHHH
Q psy16658        139 FI---GEIAESS------------IR--------------------------------------GISAIIVGIVQFIMTA  165 (318)
Q Consensus       139 ~~---~~~~~~~------------~~--------------------------------------g~~~~~~~~~~~~~~~  165 (318)
                      ..   +|.++++            ++                                      |......+++..++.+
T Consensus       191 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~  270 (394)
T PRK10213        191 IIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTS  270 (394)
T ss_pred             HHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence            00   1110000            00                                      4666777788899999


Q ss_pred             HHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhh
Q psy16658        166 LSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEV  245 (318)
Q Consensus       166 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  245 (318)
                      +.+++.||.+ |+.+..+..........+...          ....+.......+.+.++........ +.+.+..| ++
T Consensus       271 ~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~  337 (394)
T PRK10213        271 LSSFILKRSV-KLALAGAPLVLAVSALVLTLW----------GSDKIVATGVAIIWGLTFALVPVGWS-TWITRSLA-DQ  337 (394)
T ss_pred             HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHCc-cc
Confidence            9999999954 444333333322222222211          11233444455555655554444344 56667676 44


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658        246 KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL  293 (318)
Q Consensus       246 r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  293 (318)
                      +++..+......++|..+||.+.|.+.|+.|++..+...+.+..+..+
T Consensus       338 ~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        338 AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            667888888888999999999999999998887766665555544433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=5.2e-24  Score=186.90  Aligned_cols=264  Identities=14%  Similarity=0.127  Sum_probs=171.2

Q ss_pred             ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658         11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV   90 (318)
Q Consensus        11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~   90 (318)
                      .....|.+|.+.+|       +|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|+
T Consensus         7 ~~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         7 WVTFSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             HHHHHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence            34567889999998       99999999999999999999999999999999999988766655554443323333799


Q ss_pred             HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------------hhhHhHHhH---
Q psy16658         91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------------------GGLSAIIPM---  138 (318)
Q Consensus        91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------~~~~~~~p~---  138 (318)
                      +.+++.|+++|++.+. .+.....++|++|+|+|+++++                             ......++.   
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            9999999999999986 4566667799999999999988                             000001110   


Q ss_pred             -----HHHHHhh---------c---------ccc------------------------------h---HHHHHHHHHHHH
Q psy16658        139 -----FIGEIAE---------S---------SIR------------------------------G---ISAIIVGIVQFI  162 (318)
Q Consensus       139 -----~~~~~~~---------~---------~~~------------------------------g---~~~~~~~~~~~~  162 (318)
                           .++|..+         +         +++                              |   .......+....
T Consensus       159 ~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~  238 (368)
T TIGR00903       159 ILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILA  238 (368)
T ss_pred             HHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence                 0122110         0         011                              1   001122233334


Q ss_pred             HHHHHHHHhhccCCe---ehhh-hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658        163 MTALSVVLVDKAGRR---ILLL-LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG  238 (318)
Q Consensus       163 ~~~~~g~l~d~~g~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (318)
                      +.+..+++.||..||   +... ......++....+...           ...+.......+.+.+....+ +..+++.+
T Consensus       239 g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~  306 (368)
T TIGR00903       239 GLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-----------LNRLALFAFIGIAGLLMLPAY-AIIMDWIG  306 (368)
T ss_pred             HHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----------cccHHHHHHHHHHHHhhhhhH-HHHHHHHH
Confidence            445567888887654   2222 1222222222222210           112222223333333332222 33447888


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      |.+|++.|+++.|+.+..+++++..+|.+.+.+..  +.+..|.+++...+++.+...
T Consensus       307 ~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       307 KFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988873  666777777777777666553

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1e-23  Score=179.41  Aligned_cols=275  Identities=20%  Similarity=0.270  Sum_probs=214.5

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH---
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV---   90 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~---   90 (318)
                      ..++.+.+.+|       +++|++|.+++.+...+...+..++.|.+.||+|.|++...+.++..+.++..+++.++   
T Consensus        33 ~s~l~~~i~~~-------~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~  105 (417)
T COG2223          33 FSPLGVFIKSD-------FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST  105 (417)
T ss_pred             HHHHHhhhccc-------cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            34555666655       99999999999999999999999999999999999999999999999999999998654   


Q ss_pred             HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------hhhHhHHhHHH---------------------
Q psy16658         91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------GGLSAIIPMFI---------------------  140 (318)
Q Consensus        91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------~~~~~~~p~~~---------------------  140 (318)
                      +++++.+.+.|++ |..+.+.++.+++|+|||++|.+++         .+.....|.+.                     
T Consensus       106 ~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v  184 (417)
T COG2223         106 WQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI  184 (417)
T ss_pred             HHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5999999999998 8888999999999999999999999         11111222211                     


Q ss_pred             ------------HHHhh-------------cccc--------------------------------------hHHHHHHH
Q psy16658        141 ------------GEIAE-------------SSIR--------------------------------------GISAIIVG  157 (318)
Q Consensus       141 ------------~~~~~-------------~~~~--------------------------------------g~~~~~~~  157 (318)
                                  +|.++             .+++                                      |.......
T Consensus       185 ~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~  264 (417)
T COG2223         185 AAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFP  264 (417)
T ss_pred             HHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence                        22111             0011                                      57778888


Q ss_pred             HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeee
Q psy16658        158 IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMV  237 (318)
Q Consensus       158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (318)
                      +.+.+.++++|+++||+|.+|++...+..++++..++........+    ..................+.+...+. ..+
T Consensus       265 ~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~l~~~~G~GnGsvf-k~I  339 (417)
T COG2223         265 LIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH----GGSFVVFVAVFLALFVFAGLGNGSVF-KMI  339 (417)
T ss_pred             HHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc----CcchHHHHHHHHHHHHHhccCcchhe-eec
Confidence            9999999999999999999999998888888888777764322221    12233334444445555555555555 777


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        238 GELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       238 ~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ...+|++ .|.+.|+...++.+|+..-|...+...|..| +...|+++.....++.++.+....+.
T Consensus       340 p~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         340 PVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             hHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777764 6999999999999999999999999999988 88889988888888877766655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.5e-23  Score=187.25  Aligned_cols=262  Identities=16%  Similarity=0.092  Sum_probs=191.1

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +...+..+...|.+|.+.++       ++.++.+.++..+.+.++..++.++.|+++||+||||++..+..+..++.+..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   95 (406)
T PRK15402         23 FATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI   95 (406)
T ss_pred             HHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            33445667778888888887       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH------------------
Q psy16658         85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------  140 (318)
Q Consensus        85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------  140 (318)
                      .++++++.+++.|+++|++.+...+...+.+.|++|+++|.+..+      .....+.|.+.                  
T Consensus        96 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~  175 (406)
T PRK15402         96 LLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA  175 (406)
T ss_pred             HHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence            999999999999999999999888889999999999999887666      00001111110                  


Q ss_pred             -------------HHHh----hc--------------ccc--------------------------------------hH
Q psy16658        141 -------------GEIA----ES--------------SIR--------------------------------------GI  151 (318)
Q Consensus       141 -------------~~~~----~~--------------~~~--------------------------------------g~  151 (318)
                                   +|.+    ++              +++                                      |.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~  255 (406)
T PRK15402        176 LAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGL  255 (406)
T ss_pred             HHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH
Confidence                         1110    00              001                                      23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658        152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP  231 (318)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (318)
                      ......++..++.++.+++.||+++|+.+..+.....++...+.......      ....++......+.+.+.+....+
T Consensus       256 ~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~g~g~~~~~~~  329 (406)
T PRK15402        256 LQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS------SHAYLWLTAGLSLYAFGIGLANAG  329 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc------cccHHHHHHHHHHHHHHHHHHhhh
Confidence            33444556778889999999999999988887776666665554432111      112333344455555555544333


Q ss_pred             cceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q psy16658        232 IPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATF  281 (318)
Q Consensus       232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  281 (318)
                      .. ... ...++++|+++.+..+.....+..+++.+.+.+.+..++....
T Consensus       330 ~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  377 (406)
T PRK15402        330 LY-RLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFN  377 (406)
T ss_pred             HH-HHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence            32 232 2334578999999999999999999999999998887754433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=1.2e-23  Score=185.70  Aligned_cols=274  Identities=16%  Similarity=0.164  Sum_probs=193.5

Q ss_pred             cccccccccccccccccccc-ccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHH-HHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILT-STTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVIL-AFCIPFIIS   80 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~   80 (318)
                      ..+..++..+...|.+|.+. ++       +|.++.+.|++.+.+.+...+.+++.|+++||+||||.++ .+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            34667788888899999864 45       8999999999999999999999999999999999998755 466666777


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHH--H------hhhHhHHhHH-------------
Q psy16658         81 WVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVA--T------GGLSAIIPMF-------------  139 (318)
Q Consensus        81 ~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~--~------~~~~~~~p~~-------------  139 (318)
                      .++++++++++.+++.|+++|.+.+...|...++..|+.|+++|++.+  +      .+...+.|.+             
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~  157 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM  157 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence            888899999999999999999888888888888999999888776431  2      0000000000             


Q ss_pred             ------------------HHHHhhc--------------ccc--------------------------------------
Q psy16658        140 ------------------IGEIAES--------------SIR--------------------------------------  149 (318)
Q Consensus       140 ------------------~~~~~~~--------------~~~--------------------------------------  149 (318)
                                        .+|.+++              +++                                      
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  237 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLA  237 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence                              1111000              000                                      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |...........++.++.|++.||++||+.+..+.....+....+...           .+.+.......+.+.+.+...
T Consensus       238 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~g~~~  306 (375)
T TIGR00899       238 GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-----------NSLWALLMLQLLNAIFIGILA  306 (375)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            234444445566778889999999999998877655544433332221           112233333334444444333


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                       +....+..|..|++ ++++.++.+...++|..++|.+.|.+.|..|++..+.+.+...+++.++..
T Consensus       307 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       307 -GIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             -HHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence             33336667877765 679999999999999999999999999999998888888777766655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=9.7e-24  Score=192.82  Aligned_cols=257  Identities=16%  Similarity=0.112  Sum_probs=198.0

Q ss_pred             cccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW   81 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~   81 (318)
                      ++.++..++....+..+|.+.+|       +|.+.++.+|+.+.+.++.....+++|+++||+|||++++.+..+..+++
T Consensus        13 ~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995         13 LVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            34566778888889999999998       99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhcc-CchhhhHHHH------hhhHhHHhHHH--------------
Q psy16658         82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIA-ESSIRAGVAT------GGLSAIIPMFI--------------  140 (318)
Q Consensus        82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~------~~~~~~~p~~~--------------  140 (318)
                      +.+++++|++.++++|+++|++.+...+.....+.+++ |+|+|+++++      .+...+.|.+.              
T Consensus        86 ~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~  165 (495)
T PRK14995         86 LAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL  165 (495)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence            99999999999999999999999998888888887776 7789998887      00000111100              


Q ss_pred             -----------------HH-----------------------------------------------------------Hh
Q psy16658        141 -----------------GE-----------------------------------------------------------IA  144 (318)
Q Consensus       141 -----------------~~-----------------------------------------------------------~~  144 (318)
                                       ++                                                           .+
T Consensus       166 i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~  245 (495)
T PRK14995        166 INVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLA  245 (495)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence                             00                                                           00


Q ss_pred             hc---------ccc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658        145 ES---------SIR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRR  177 (318)
Q Consensus       145 ~~---------~~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~  177 (318)
                      .+         +++                                      |.......+...++.++.|++.||+++|
T Consensus       246 ~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~  325 (495)
T PRK14995        246 ASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR  325 (495)
T ss_pred             CCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            00         000                                      4556666778888999999999999999


Q ss_pred             ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHH
Q psy16658        178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALN  257 (318)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  257 (318)
                      +.+..+..+..++...+.....        ....+.......+.+.+.+....+.. ....+..|+++++.+.++.++..
T Consensus       326 ~~~~~g~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~  396 (495)
T PRK14995        326 LVATGGMALSALSFYGLAMTDF--------STQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAY  396 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHH
Confidence            8887777666666554433210        11123334455566666666555555 55667889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy16658        258 WISAFIVTLCFVFLVKN  274 (318)
Q Consensus       258 ~~g~~~~~~~~g~l~~~  274 (318)
                      ++|+.+|+.+.+.+.++
T Consensus       397 ~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        397 ELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=5.4e-23  Score=186.01  Aligned_cols=267  Identities=13%  Similarity=0.109  Sum_probs=181.8

Q ss_pred             CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhhccccc
Q psy16658         33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK----NVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~  108 (318)
                      |.+..+.+++.+.+.++..++++++|+++||+|||++++.+..+.+++.+.+++++    +++.+++.|++.|++.+...
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~  138 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW  138 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence            78999999999999999999999999999999999999999999999999888764    78889999999999999988


Q ss_pred             cccchhhhhccCchhhhHHHH------hhhHhH-HhHH-------------------------------HH---HH----
Q psy16658        109 AIIPMFIGEIAESSIRAGVAT------GGLSAI-IPMF-------------------------------IG---EI----  143 (318)
Q Consensus       109 ~~~~~~i~~~~~~~~r~~~~~------~~~~~~-~p~~-------------------------------~~---~~----  143 (318)
                      +.....+.|++|+|+|+++++      .++... .|..                               .+   +.    
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP  218 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC
Confidence            888889999999999998887      000000 0100                               01   10    


Q ss_pred             -----h----------hc--------------ccc--------------------------------------hHHHHHH
Q psy16658        144 -----A----------ES--------------SIR--------------------------------------GISAIIV  156 (318)
Q Consensus       144 -----~----------~~--------------~~~--------------------------------------g~~~~~~  156 (318)
                           +          ++              +++                                      +....+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~  298 (452)
T PRK11273        219 PIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  298 (452)
T ss_pred             ChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                 0          00              001                                      2445566


Q ss_pred             HHHHHHHHHHHHHHhhccC--Ceehhhh-hhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658        157 GIVQFIMTALSVVLVDKAG--RRILLLL-SDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP  233 (318)
Q Consensus       157 ~~~~~~~~~~~g~l~d~~g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (318)
                      .++.+++.++.|+++||++  ||+.... ...+..++...+..  ..       ....+.........+.... ......
T Consensus       299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~--~~-------~~~~~~~~~~~~~~g~~~~-~~~~~~  368 (452)
T PRK11273        299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL--NP-------AGNPTVDMACMIVIGFLIY-GPVMLI  368 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH--hc-------ccChHHHHHHHHHHHHHHH-hHHHHH
Confidence            7778889999999999984  4443222 11111222211111  00       0111222222222222211 111112


Q ss_pred             eeeeccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHH
Q psy16658        234 WMMVGELFAPEVKGSATGIAVALNWISAFI-VTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQI  310 (318)
Q Consensus       234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (318)
                      .....|.+|++.|+++.|+.+...++++.+ +|.+.|.+.|+.|++..|++.++.++++.+....+. +.++|+.+|.
T Consensus       369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  445 (452)
T PRK11273        369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM-IGEKRHHEEL  445 (452)
T ss_pred             HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh-ccccchHHHH
Confidence            245568999999999999999999998765 799999999999999999888887777766655433 3333443333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.91  E-value=1.4e-23  Score=186.62  Aligned_cols=255  Identities=21%  Similarity=0.255  Sum_probs=181.5

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~   87 (318)
                      ..+.....+.+|.+.++       +|.++++.++..+.+.++..+++++.|+++||+||||.+..+..+..++......+
T Consensus        16 ~~~~~~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~   88 (392)
T PRK10473         16 PAGIDMYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA   88 (392)
T ss_pred             HHHHHHHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            33445556788988888       89999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH---------------------
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI---------------------  140 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~---------------------  140 (318)
                      ++++.+++.|+++|++.+...+...+++.|++|+++|++..+      .+...+.|.+.                     
T Consensus        89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~  168 (392)
T PRK10473         89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI  168 (392)
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence            999999999999999999989999999999999999998877      00001111110                     


Q ss_pred             ----------HHHhhc----------------ccc--------------------------------------hHHHHHH
Q psy16658        141 ----------GEIAES----------------SIR--------------------------------------GISAIIV  156 (318)
Q Consensus       141 ----------~~~~~~----------------~~~--------------------------------------g~~~~~~  156 (318)
                                +|.+++                +++                                      |......
T Consensus       169 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  248 (392)
T PRK10473        169 LVLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALT  248 (392)
T ss_pred             HHHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHH
Confidence                      111100                000                                      3556667


Q ss_pred             HHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceee
Q psy16658        157 GIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMM  236 (318)
Q Consensus       157 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (318)
                      ++..+++.++.+++.||++||+.+..+.....++...+....           ..+.......+...+.......   ..
T Consensus       249 ~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~g~~~~~~~---~~  314 (392)
T PRK10473        249 AGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-----------SHAVSLFGITLICAGFSVGFGV---AM  314 (392)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHH---HH
Confidence            788889999999999999999998888777666666555421           1112222223333333322222   12


Q ss_pred             eccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658        237 VGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSV  286 (318)
Q Consensus       237 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  286 (318)
                      ..+..|.++|+   |..+.....+..+++.+.+.+.++.|+.......+.
T Consensus       315 ~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        315 SQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            23444554443   455566677888888888888888887544444333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=8.1e-24  Score=193.22  Aligned_cols=258  Identities=15%  Similarity=0.163  Sum_probs=199.9

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      +.++..++....++.+|.+.++       +|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711        10 GTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3455667778888899999988       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh-------------------
Q psy16658         83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP-------------------  137 (318)
Q Consensus        83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p-------------------  137 (318)
                      .+++++|++.+++.|+++|++.+...+...+++.|++|+|+|+++.+      .+...+.|                   
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            99999999999999999999999999999999999999999999888      00000000                   


Q ss_pred             ------------HHHHH------------------------------------------------------------Hhh
Q psy16658        138 ------------MFIGE------------------------------------------------------------IAE  145 (318)
Q Consensus       138 ------------~~~~~------------------------------------------------------------~~~  145 (318)
                                  ...+|                                                            .++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD  242 (485)
T ss_pred             hHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence                        00000                                                            000


Q ss_pred             cc---------cc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCee
Q psy16658        146 SS---------IR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRI  178 (318)
Q Consensus       146 ~~---------~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~  178 (318)
                      ++         ++                                      |.......++..++.++.|++.||++||+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  322 (485)
T TIGR00711       243 DNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK  322 (485)
T ss_pred             CCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence            00         00                                      46667777888999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHH
Q psy16658        179 LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNW  258 (318)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  258 (318)
                      .+..+.....++...+......       ....+.......+.+.+.+....+.. ....+..|+++|+++.|+.+....
T Consensus       323 ~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  394 (485)
T TIGR00711       323 LVTIGLILYAVGFYWRAFTFTP-------DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQ  394 (485)
T ss_pred             HHHHHHHHHHHHHHHHhccCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHH
Confidence            9888877766666655421110       11223334445555555555444554 445577899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy16658        259 ISAFIVTLCFVFLVKNL  275 (318)
Q Consensus       259 ~g~~~~~~~~g~l~~~~  275 (318)
                      +|+.+++.+.+.+.++.
T Consensus       395 ~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       395 LGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00897 2A0118 polyol permease family

Probab=99.91  E-value=4.2e-23  Score=184.06  Aligned_cols=277  Identities=14%  Similarity=0.138  Sum_probs=192.8

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +......+...+.+|.+.+|       +|.++++.|++.+.+.++..++.++.|++.||+||||++..+..+..++++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~   95 (402)
T TIGR00897        23 VVFMTGDGLEQGWLSPFLKA-------LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF   95 (402)
T ss_pred             HHHHHhhhhHHHhHHHHHHH-------hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            33444445555667777766       89999999999999999999999999999999999999999999998887765


Q ss_pred             H---H-HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH-hHHhHHH-------------
Q psy16658         85 L---F-AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS-AIIPMFI-------------  140 (318)
Q Consensus        85 ~---~-~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~-~~~p~~~-------------  140 (318)
                      .   . .++++.+++.|+++|++.+...+...+.+.|++|+|+|+++++      .+.. ...|.+.             
T Consensus        96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~  175 (402)
T TIGR00897        96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTL  175 (402)
T ss_pred             HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence            3   2 3578889999999999988888888888999999999999988      1110 0111110             


Q ss_pred             ------------------HHH-----hhc---------------ccc---------------------------------
Q psy16658        141 ------------------GEI-----AES---------------SIR---------------------------------  149 (318)
Q Consensus       141 ------------------~~~-----~~~---------------~~~---------------------------------  149 (318)
                                        ++.     +++               +++                                 
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s  255 (402)
T TIGR00897       176 WSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFS  255 (402)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                              110     000               011                                 


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHhhccCCeehhh-hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658        150 ----GISAIIVGIVQFIMTALSVVLVDKAGRRILLL-LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM  224 (318)
Q Consensus       150 ----g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (318)
                          +.......+++.++++..|++.||++||+.+. .+.+...++...+.......      ....+.......+.+..
T Consensus       256 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~G~~  329 (402)
T TIGR00897       256 TSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF------GHSFAVALIIAIALGIF  329 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc------CCcHHHHHHHHHHHHHH
Confidence                24445566788999999999999999888764 22222333222222111000      01123333344444444


Q ss_pred             HHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        225 FSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       225 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ... ..+.. ....|. +|++|+++.|+.+...++++.++|.+.|.+.|..|+...+++.+++.++..++..+
T Consensus       330 ~~~-~~~~~-~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       330 LAG-YVPLA-AVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHH-HHHHH-HHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            333 23333 444565 45679999999999999999999999999999999988888888777766655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=3.6e-23  Score=183.32  Aligned_cols=254  Identities=18%  Similarity=0.195  Sum_probs=185.8

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL   85 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~   85 (318)
                      ....+.....|.+|.+.++       +|.++++.+++.+.+.++..++++++|+++||+||||++..+..+..++.+...
T Consensus        16 ~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   88 (385)
T TIGR00710        16 LGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA   88 (385)
T ss_pred             HHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            3455667788889998888       899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-------------------
Q psy16658         86 FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-------------------  140 (318)
Q Consensus        86 ~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-------------------  140 (318)
                      ++++++.+++.|++.|++.+...+...+++.|++|+|+|++..+      .+...+.|.+.                   
T Consensus        89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~  168 (385)
T TIGR00710        89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA  168 (385)
T ss_pred             HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888      00000001000                   


Q ss_pred             ------------HHHhhc-----------------ccc--------------------------------------hHHH
Q psy16658        141 ------------GEIAES-----------------SIR--------------------------------------GISA  153 (318)
Q Consensus       141 ------------~~~~~~-----------------~~~--------------------------------------g~~~  153 (318)
                                  +|.+++                 +++                                      |...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  248 (385)
T TIGR00710       169 GILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLF  248 (385)
T ss_pred             HHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHH
Confidence                        111000                 000                                      4566


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658        154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP  233 (318)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (318)
                      ....+..+++.++.+++.||+++|+.+..+.....++..++.......      ............+.+.+.+.......
T Consensus       249 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~  322 (385)
T TIGR00710       249 ALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG------LGSWAMIIGPMMFVGIGNSMISSIAM  322 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788899999999999999999988877766666655554421111      01111222233344444444333333


Q ss_pred             eeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        234 WMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                       ....|..| ++|+++.++.+...+.++.+.+.+.+.+.+.
T Consensus       323 -~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       323 -AYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             -HHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             55567666 5689999999999887666666666644433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.91  E-value=1.6e-23  Score=184.84  Aligned_cols=262  Identities=16%  Similarity=0.138  Sum_probs=186.3

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +...++....++.+|.+.++       +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   77 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF   77 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence            34445566677788888877       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH-HH-----------------
Q psy16658         85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM-FI-----------------  140 (318)
Q Consensus        85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~-~~-----------------  140 (318)
                      .++++++.+++.|++.|++.+...+...+++.|++|+|+|++.++      .+...+.|. ..                 
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (379)
T TIGR00881        78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG  157 (379)
T ss_pred             HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            999999999999999999999999999999999999999988776      111111110 00                 


Q ss_pred             --------------HHHh-------------hc------------c-----------cc---------------------
Q psy16658        141 --------------GEIA-------------ES------------S-----------IR---------------------  149 (318)
Q Consensus       141 --------------~~~~-------------~~------------~-----------~~---------------------  149 (318)
                                    +|..             ++            +           ++                     
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (379)
T TIGR00881       158 IIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILD  237 (379)
T ss_pred             HHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence                          1000             00            0           00                     


Q ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658        150 -----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF  212 (318)
Q Consensus       150 -----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (318)
                                       +.......+...+++++.+++.||..+|+...............+.......      ....+
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  311 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP------AANPL  311 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc------chhHH
Confidence                             3566677788889999999999986433322222111111111111110000      01112


Q ss_pred             hHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Q psy16658        213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAAT  280 (318)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  280 (318)
                      .........+... .+..+.......|..|+++|+++.|+.+....++..++|.+.|.+.|+.||+..
T Consensus       312 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       312 MDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            2222233333222 222223335678999999999999999999999999999999999999988654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.91  E-value=3.5e-23  Score=183.79  Aligned_cols=268  Identities=13%  Similarity=0.052  Sum_probs=188.9

Q ss_pred             ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658          7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF   86 (318)
Q Consensus         7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~   86 (318)
                      ..++.......++.+.+|       ++.++.+.+++.+.+.+++.+..+++|+++||+||||+++++..+.+++++.+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195         15 SALADNALLFAAIALLKE-------LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-------cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            333333344445555566       7888999999999999999999999999999999999999999999999888887


Q ss_pred             HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH----------------------
Q psy16658         87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM----------------------  138 (318)
Q Consensus        87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~----------------------  138 (318)
                      +++.   ++.|+++|++.+...|+..+++.|++|+|+|+++++      .....+.|.                      
T Consensus        88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~  164 (393)
T PRK11195         88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYL  164 (393)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7764   678999999999999999999999999999999998      000000000                      


Q ss_pred             -------HHHHHh---h---c-----------------ccc--------------------------------------h
Q psy16658        139 -------FIGEIA---E---S-----------------SIR--------------------------------------G  150 (318)
Q Consensus       139 -------~~~~~~---~---~-----------------~~~--------------------------------------g  150 (318)
                             .++|.+   +   +                 +++                                      |
T Consensus       165 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G  244 (393)
T PRK11195        165 LAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPA  244 (393)
T ss_pred             HHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence                   001100   0   0                 000                                      4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      ......+++.+++.+..+++.||.++|+.+..+.. .++....+...           .+.+.......+.+.+.+....
T Consensus       245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~g~~~~  312 (393)
T PRK11195        245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ-----------HSLLPAYPLLILIGALGGFFVV  312 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----------hHHHHHHHHHHHHHHhhhhhhh
Confidence            66777778888999999999999888887766643 23322222221           1233334444455555555455


Q ss_pred             ccceeeeccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658        231 PIPWMMVGELFAPEV-KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      +.. +...|..|++. +|++.++.+...+++..++..+.+.+ +..|-+..+.+.+...+.+..+.+.+
T Consensus       313 ~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        313 PMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            555 56667666654 79999999999999999999998855 67787777766555555555544443

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=4.3e-23  Score=183.38  Aligned_cols=275  Identities=16%  Similarity=0.200  Sum_probs=196.1

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .++.....+...|.+|.+.++.      +|+++.++|++.+.+.++..+.+++.|+++||+|||+++..+.++..++.+.
T Consensus        16 ~~~~~~g~~~~~~~l~~~l~~~------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~   89 (395)
T PRK10054         16 SLLLTIGRGATLPFMTIYLSRQ------YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA   89 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence            3455566677778887766442      8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------------hh-
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------------GG-  131 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------------~~-  131 (318)
                      .+++++++.+++.|++.|.+.+...+...++..|..|+++|+++++                               .. 
T Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~  169 (395)
T PRK10054         90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAI  169 (395)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            9999999999999999998888788889999999999999999877                               00 


Q ss_pred             --hHhHHhH--HHHHHhh----c-----------ccc----------------------------------------hHH
Q psy16658        132 --LSAIIPM--FIGEIAE----S-----------SIR----------------------------------------GIS  152 (318)
Q Consensus       132 --~~~~~p~--~~~~~~~----~-----------~~~----------------------------------------g~~  152 (318)
                        ....+..  ..++.++    +           +++                                        |..
T Consensus       170 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  249 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVV  249 (395)
T ss_pred             HHHHHHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHH
Confidence              0000111  0111110    0           011                                        123


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658        153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI  232 (318)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
                      .....+.........+++.||.++|+.+..+.....++...+...          ..+.+.......+.+.+... ..|.
T Consensus       250 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~-~~p~  318 (395)
T PRK10054        250 LPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS----------GNSLLLWGMSAAVFTVGEII-YAPG  318 (395)
T ss_pred             HHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc----------chHHHHHHHHHHHHHHHHHH-HHhh
Confidence            333333334455677888999999998887776666665554431          11122233344444444433 2334


Q ss_pred             ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ....+.+..|++.|+++.+..+ ...+|..+||.+.|.+.|+.|+...+++.+....+..++..
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            4467788899999999988755 67789999999999999999987777776655555444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.90  E-value=3e-22  Score=179.06  Aligned_cols=283  Identities=13%  Similarity=0.056  Sum_probs=192.1

Q ss_pred             ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hhHHHHHHHHHHHHHHHHHHH
Q psy16658          9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGR-KPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus         9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~   87 (318)
                      ...+...|.++.+..+      ++|.+.+|+|++.+.+.++..++++++|+++||+|| |+++.++.++..+...+..+.
T Consensus        16 ~~~~~~~~~l~~~l~~------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~   89 (418)
T TIGR00889        16 FIWGSWLVTLGSYMSK------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV   89 (418)
T ss_pred             HHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            3444554445444433      289999999999999999999999999999999965 778888888888888888899


Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhh--------hccCchhhhHHHHhhhHhHHhHHH-------------------
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIG--------EIAESSIRAGVATGGLSAIIPMFI-------------------  140 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~p~~~-------------------  140 (318)
                      ++++.+.+.|++.|++.+...+...++..        |......|.|..+.++..+.|.+.                   
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~~~~~~~~f~~~~~~~  169 (418)
T TIGR00889        90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLDIELSNIQLYITAGSS  169 (418)
T ss_pred             cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            99999999999999987777666655432        222223344444411111111000                   


Q ss_pred             ----------HHHh---h-c----------------ccc-----------------------------------------
Q psy16658        141 ----------GEIA---E-S----------------SIR-----------------------------------------  149 (318)
Q Consensus       141 ----------~~~~---~-~----------------~~~-----------------------------------------  149 (318)
                                +|.+   + +                +++                                         
T Consensus       170 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  249 (418)
T TIGR00889       170 ALLGVFALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFV  249 (418)
T ss_pred             HHHHHHHhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhh
Confidence                      1110   0 0                000                                         


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHH
Q psy16658        150 ----GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMF  225 (318)
Q Consensus       150 ----g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (318)
                          |....+..+..+++.+..+++.||+|+|+.+..+.+...++...+....   .    .....+.......+.+...
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~---~----~~~~~~~l~l~~~l~g~~~  322 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD---P----EYFGYALLFLSMIVYGCAF  322 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---c----chhhHHHHHHHHHHHHHHH
Confidence                1222334455667788999999999999999988887777655554410   0    0001122333444555554


Q ss_pred             HhcccccceeeeccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHHHHHHhhee
Q psy16658        226 SLGYGPIPWMMVGELFAPEVKGSATGIAV-ALNWISAFIVTLCFVFLVKNL------GSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       226 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      +....... .++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.|+.      ||+..|.+.++...+..++.+++
T Consensus       323 ~~~~~~~~-~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~  401 (418)
T TIGR00889       323 DFFNISGS-VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF  401 (418)
T ss_pred             HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            44333333 67789999999999999997 567899999999999999984      57888888888877777777777


Q ss_pred             ccCCCCC
Q psy16658        299 VPETKGK  305 (318)
Q Consensus       299 ~~~~~~~  305 (318)
                      .+|++++
T Consensus       402 ~~~~~~~  408 (418)
T TIGR00889       402 FKYSHNA  408 (418)
T ss_pred             hCCcccC
Confidence            7766443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.90  E-value=1.2e-22  Score=180.69  Aligned_cols=269  Identities=12%  Similarity=0.079  Sum_probs=186.0

Q ss_pred             cccccccccccccccccc-ccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILT-STTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      ++.........|.+|.+. ++       +|.+..+.|++.+...++..+..++.|+++||+|||+++..+..+..++.+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~   92 (400)
T PRK11646         20 MLVVLGFFVVFPLISIRFVDQ-------LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT   92 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            344555566677777654 44       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh--------------------
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP--------------------  137 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p--------------------  137 (318)
                      +.++++++.+++.|+++|++.+...|...+++.|++|+|+|+++++      .+...+.|                    
T Consensus        93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~  172 (400)
T PRK11646         93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAV  172 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999998888999999999999999999988      00000000                    


Q ss_pred             ----------HHHHHHhhc--------------ccc-------------------------------------hHHHHHH
Q psy16658        138 ----------MFIGEIAES--------------SIR-------------------------------------GISAIIV  156 (318)
Q Consensus       138 ----------~~~~~~~~~--------------~~~-------------------------------------g~~~~~~  156 (318)
                                ...+|.+++              +++                                     |......
T Consensus       173 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~  252 (400)
T PRK11646        173 LFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIE  252 (400)
T ss_pred             HHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHH
Confidence                      000111000              001                                     2333344


Q ss_pred             HHHHHHHHHHHHHHhh-ccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        157 GIVQFIMTALSVVLVD-KAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       157 ~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      ++.........+++.| |++.++.+..+.....++...+...           ++.+.......+.+.+.....++.. +
T Consensus       253 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~l~~~g~~~~~p~~~-~  320 (400)
T PRK11646        253 ACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----------SNLQQLFTLICLFYIGSIIAEPARE-T  320 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHccHH-H
Confidence            4444444444455554 4565665666655555555444331           1122333333444444444333444 7


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hhhHHHHHHHHHHHHH
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG----SAATFWIFSVICFVGT  292 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~  292 (318)
                      ...|..|+++|+++.|+.+....+|..++|.+.|.+.|+.+    ....+......+++..
T Consensus       321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999999853    2344444444444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.89  E-value=1.2e-22  Score=184.71  Aligned_cols=265  Identities=16%  Similarity=0.214  Sum_probs=178.2

Q ss_pred             cccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH
Q psy16658         12 AWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL   91 (318)
Q Consensus        12 ~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~   91 (318)
                      ....|.+|.+.++       +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++
T Consensus        53 ~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~  125 (476)
T PLN00028         53 FAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSAT  125 (476)
T ss_pred             HHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3455777888887       899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhh----------hHhHHhHH----------------------
Q psy16658         92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGG----------LSAIIPMF----------------------  139 (318)
Q Consensus        92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~----------~~~~~p~~----------------------  139 (318)
                      .+++.|+++|++.+... ....++.|++|+++|+++++..          ...+.|.+                      
T Consensus       126 ~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~  204 (476)
T PLN00028        126 GFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP  204 (476)
T ss_pred             HHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence            99999999999987654 4567899999999999887710          00001110                      


Q ss_pred             -------------H-HH--------Hhhc---c-------------cc--------------------------------
Q psy16658        140 -------------I-GE--------IAES---S-------------IR--------------------------------  149 (318)
Q Consensus       140 -------------~-~~--------~~~~---~-------------~~--------------------------------  149 (318)
                                   + ++        .+++   +             ++                                
T Consensus       205 g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  284 (476)
T PLN00028        205 GLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFG  284 (476)
T ss_pred             HHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence                         0 00        0000   0             00                                


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh-----hh--hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHH
Q psy16658        150 ------GISAIIVGIVQFIMTALSVVLVDKAGRRIL-----LL--LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLL  216 (318)
Q Consensus       150 ------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (318)
                            +....+..+++.+++++.|+++||++||+.     ..  ....+.++....+..           ....+....
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-----------~~~~~~~~~  353 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR-----------ANSLGAAIV  353 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHH
Confidence                  356677778899999999999999986531     11  111111111111111           011222233


Q ss_pred             HHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        217 SVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      .+.+++.+....... .+.+..+.. ++++++..|+.+..+++|+.++|.+.+ ..+..+|+..|.+.+++.+++.++.+
T Consensus       354 ~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        354 VMILFSIFVQAACGA-TFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             HHHHHHHHHHHhhhh-hcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence            333444433332222 335555654 568999999998887777777776654 11233577888888777777666554


Q ss_pred             ee
Q psy16658        297 VL  298 (318)
Q Consensus       297 ~~  298 (318)
                      +.
T Consensus       431 ~~  432 (476)
T PLN00028        431 FI  432 (476)
T ss_pred             he
Confidence            43

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.89  E-value=3.7e-22  Score=176.48  Aligned_cols=245  Identities=21%  Similarity=0.279  Sum_probs=173.5

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~   87 (318)
                      -+..++..|.+|.+.++       +|.++++.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++...+.++
T Consensus         4 ~~~~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~   76 (377)
T PRK11102          4 PLAIDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA   76 (377)
T ss_pred             chHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            34566778999999988       89999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH----------------------
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF----------------------  139 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~----------------------  139 (318)
                      ++++.+++.|+++|++.+...+...+++.|++|+|+|++.++      .+...+.|.+                      
T Consensus        77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  156 (377)
T PRK11102         77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAI  156 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887      0000000100                      


Q ss_pred             ---------HHHHh---h--c--------------ccc--------------------------------------hHHH
Q psy16658        140 ---------IGEIA---E--S--------------SIR--------------------------------------GISA  153 (318)
Q Consensus       140 ---------~~~~~---~--~--------------~~~--------------------------------------g~~~  153 (318)
                               .+|..   +  +              +++                                      |...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~  236 (377)
T PRK11102        157 LAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYF  236 (377)
T ss_pred             HHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHH
Confidence                     01110   0  0              001                                      4666


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658        154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP  233 (318)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (318)
                      ....+..+++.++.+++.||+++|+.+..+.....+..+.+......       ....+.......+.............
T Consensus       237 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (377)
T PRK11102        237 ALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-------DLGFWALVVGVAAFVGCVSMISSNAM  309 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            77788888999999999999999998887766544433322221110       01122222222233333322222222


Q ss_pred             eeeeccccchhhhhhHHHHHHHHHH-HHHHHHHHHH
Q psy16658        234 WMMVGELFAPEVKGSATGIAVALNW-ISAFIVTLCF  268 (318)
Q Consensus       234 ~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~  268 (318)
                       ....|..| ++++++.++.+.... ++..+++.+.
T Consensus       310 -~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        310 -AVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             -HHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence             44556665 778999999877654 4455555543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=1.5e-22  Score=182.50  Aligned_cols=265  Identities=15%  Similarity=0.157  Sum_probs=182.1

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhhcccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA----KNVLMLFAARFIAGVATGGL  107 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G~~~g~~  107 (318)
                      +|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+...+.    ++++.+.+.|++.|++.+..
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~  135 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG  135 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence            68999999999999999999999999999999999999999999999988887764    46788889999999999999


Q ss_pred             ccccchhhhhccCchhhhHHHH------hhhHhHHhH--------------------------------HHHHHh-----
Q psy16658        108 SAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM--------------------------------FIGEIA-----  144 (318)
Q Consensus       108 ~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~--------------------------------~~~~~~-----  144 (318)
                      .+.....+.|++|+|+|+++++      .+...+.|.                                ..+|..     
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            9989999999999999999888      000000000                                001100     


Q ss_pred             ---------------h--c--------------ccc--------------------------------------hHHHHH
Q psy16658        145 ---------------E--S--------------SIR--------------------------------------GISAII  155 (318)
Q Consensus       145 ---------------~--~--------------~~~--------------------------------------g~~~~~  155 (318)
                                     +  +              +++                                      +....+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~  295 (438)
T TIGR00712       216 PPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFL  295 (438)
T ss_pred             CCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHH
Confidence                           0  0              000                                      356667


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      ..+.+++++++.|++.||+++++....+................  ..    ..+.+.........+... .+.......
T Consensus       296 ~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~  368 (438)
T TIGR00712       296 YEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM--NP----AGNPLVDMICMIVIGFLI-YGPVMLIGL  368 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh--cC----CCchHHHHHHHHHHHHHH-ccHHHHHHH
Confidence            77888999999999999996543322232222221111111100  00    011122222222222211 111111113


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWISA-FIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      ...|.+|++.|+++.|+.+...+.++ .++|.+.|.+.|+.|+...+.+..+...++.+..+...+|+|
T Consensus       369 ~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       369 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45688999999999999999988874 689999999999999999988888877777777766666654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.89  E-value=3e-22  Score=177.61  Aligned_cols=265  Identities=21%  Similarity=0.209  Sum_probs=177.8

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHH-----HHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSL-----IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      .++.....+..+.+.+++.     .+.++++.+.+.+.     ..++..+++++.|+++||+||||++..+.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~   80 (394)
T TIGR00883         6 WFDFYLYGFAAVLVFHTFF-----PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTL   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            3444445555566655531     23556667665543     3334457899999999999999999999999999999


Q ss_pred             HHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh-----------
Q psy16658         83 LILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP-----------  137 (318)
Q Consensus        83 ~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p-----------  137 (318)
                      +++++++++        .+++.|+++|++.+...+...+++.|++|+|+|++..+      .++..+.|           
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        81 LIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             HHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998875        47889999999999999999999999999999988776      00000000           


Q ss_pred             ------------HHH---------------HH----Hh---h-cc------------cc---------------------
Q psy16658        138 ------------MFI---------------GE----IA---E-SS------------IR---------------------  149 (318)
Q Consensus       138 ------------~~~---------------~~----~~---~-~~------------~~---------------------  149 (318)
                                  ...               +|    .+   + ++            ++                     
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITT  240 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000               10    00   0 00            00                     


Q ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658        150 -----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF  212 (318)
Q Consensus       150 -----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (318)
                                       +.......+...++.++.+++.||++||+.+.....+..+..........  .     ....+
T Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~  313 (394)
T TIGR00883       241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL--D-----SGSFT  313 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--c-----CCchH
Confidence                             35566677888899999999999999999776554433332211111110  0     11223


Q ss_pred             hHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-hhhHHHHHH
Q psy16658        213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVAL-NWISAFIVTLCFVFLVKNLG-SAATFWIFS  285 (318)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~  285 (318)
                      .......+.+...+....+.. ....|.+|+++|+++.++.+.. ..++..++|.+.|.+.|+.| ++..++...
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       314 LFFFLVLGLALIGGMYTGPMG-SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH-HHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            333444444554544444444 7888999999999999985444 56788899999999999988 655444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=1.5e-22  Score=176.92  Aligned_cols=247  Identities=25%  Similarity=0.337  Sum_probs=186.8

Q ss_pred             ccccccccccccccccc-cccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLP-ILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW   81 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~   81 (318)
                      +.+...++.+...+.+| .+.++       +|.++.+.+++.+.+.++..++.++.|+++||+||||++..+..+.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~   76 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence            44566677777888888 67777       89999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH---------------
Q psy16658         82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI---------------  140 (318)
Q Consensus        82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~---------------  140 (318)
                      +...++++++.+++.|++.|++.+...+...+++.|++|+|+|++.++      .+...+.|.+.               
T Consensus        77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~  156 (352)
T PF07690_consen   77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI  156 (352)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred             HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence            777777888899999999999999999999999999999999999998      11111111111               


Q ss_pred             ----------------H--------HHhhcc---------c--c------------------------------------
Q psy16658        141 ----------------G--------EIAESS---------I--R------------------------------------  149 (318)
Q Consensus       141 ----------------~--------~~~~~~---------~--~------------------------------------  149 (318)
                                      .        +.++++         +  +                                    
T Consensus       157 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  236 (352)
T PF07690_consen  157 SAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV  236 (352)
T ss_dssp             HHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             ccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc
Confidence                            0        000000         0  0                                    


Q ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658        150 ---------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF  220 (318)
Q Consensus       150 ---------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (318)
                               +....+..+.+.++.++.+++.||+++|+..........+....+......        .+..+......+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  308 (352)
T PF07690_consen  237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--------SSPVWLIIALFL  308 (352)
T ss_dssp             HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--------CHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHH
Confidence                     244566677777789999999999999888777766666655555443221        122344445555


Q ss_pred             HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy16658        221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT  265 (318)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~  265 (318)
                      .+.+.+....... .+..|..|+++|+++.|+.+...+++..++|
T Consensus       309 ~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  309 IGFGFGIVFPILF-SLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCHHHH-HHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6665555444444 8889999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=7.1e-22  Score=176.16  Aligned_cols=254  Identities=17%  Similarity=0.164  Sum_probs=178.9

Q ss_pred             ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh
Q psy16658          9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK   88 (318)
Q Consensus         9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~   88 (318)
                      +..+...|.+|.+.++       ++.++++.++..+++.++..++++++|+++||+|||+++..+..+..++.+.+.+++
T Consensus        20 ~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         20 LATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            4455667777888777       899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH----------------------
Q psy16658         89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------------------  140 (318)
Q Consensus        89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------------------  140 (318)
                      +++.+++.|+++|++.+...+...+++.|++|++++++..+      .+...+.|.+.                      
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~  172 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL  172 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            99999999999999988888888899999999998876655      00001111110                      


Q ss_pred             ---------HHH---hhcc----------cc-------------------------------------hHHHHHHHHHHH
Q psy16658        141 ---------GEI---AESS----------IR-------------------------------------GISAIIVGIVQF  161 (318)
Q Consensus       141 ---------~~~---~~~~----------~~-------------------------------------g~~~~~~~~~~~  161 (318)
                               ++.   ++++          ++                                     |.......++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~  252 (401)
T PRK11043        173 LILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFL  252 (401)
T ss_pred             HHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence                     000   0000          00                                     344445556777


Q ss_pred             HHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc
Q psy16658        162 IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF  241 (318)
Q Consensus       162 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (318)
                      ++.+..+++.||+++|+..........++...+.......      ....+.......+.+.+.+..++... ....|..
T Consensus       253 ~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  325 (401)
T PRK11043        253 VGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS------HPSLVPLLIPFCVMAAANGAIYPIVV-AQALRPF  325 (401)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc------cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhC
Confidence            7888889999999988876655554444443332221110      11122223333444444444333333 4444555


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                      | ++|+++.|+.+.....+...++.+.+.+.|....
T Consensus       326 ~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~  360 (401)
T PRK11043        326 P-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL  360 (401)
T ss_pred             c-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence            5 5699999999999999999999999998875443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.89  E-value=9.4e-22  Score=178.71  Aligned_cols=262  Identities=17%  Similarity=0.103  Sum_probs=176.8

Q ss_pred             CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhhccccc
Q psy16658         31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA--KNVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~g~~~  108 (318)
                      |++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++.++  .+++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            689999999999999999999999999999999999999999999999998887654  568889999999999999999


Q ss_pred             cccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------------------------------H------
Q psy16658        109 AIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-----------------------------------G------  141 (318)
Q Consensus       109 ~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-----------------------------------~------  141 (318)
                      +....++.||+|+++|+++++      .+...+.|.+.                                   +      
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~  229 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI  229 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence            999999999999999999988      00000011000                                   0      


Q ss_pred             ---HHh-------hc--c--c---c---------------------------------------------hHHHHHHHHH
Q psy16658        142 ---EIA-------ES--S--I---R---------------------------------------------GISAIIVGIV  159 (318)
Q Consensus       142 ---~~~-------~~--~--~---~---------------------------------------------g~~~~~~~~~  159 (318)
                         |.+       ++  +  +   .                                             |....+..++
T Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~  309 (465)
T TIGR00894       230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF  309 (465)
T ss_pred             CHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence               000       00  0  0   0                                             4666777888


Q ss_pred             HHHHHHHHHHHhhccCCeehhhh---hhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceee
Q psy16658        160 QFIMTALSVVLVDKAGRRILLLL---SDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMM  236 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (318)
                      ..++.++.|+++||.++|+....   ......++..............   ....+..+....+.+...... .+..+..
T Consensus       310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  385 (465)
T TIGR00894       310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL---SAAFYLTIIILTLANAVSSGP-LAGVLIN  385 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHhhhh-hhhhhhc
Confidence            99999999999999765432210   1111111111111100000000   011222222333333322222 2223244


Q ss_pred             eccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHhhe
Q psy16658        237 VGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL---GSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       237 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ..|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+..   +|...|.+.++..+++.++...
T Consensus       386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            4565654 7999999999999999999999999988753   3777888887777776655544

>TIGR00895 2A0115 benzoate transport

Probab=99.88  E-value=9.8e-22  Score=174.62  Aligned_cols=246  Identities=23%  Similarity=0.279  Sum_probs=183.6

Q ss_pred             ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658          7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF   86 (318)
Q Consensus         7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~   86 (318)
                      .+++.....+..|.+.++       +|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..++.++..+
T Consensus        29 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~  101 (398)
T TIGR00895        29 DGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL  101 (398)
T ss_pred             HHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            344555666778888887       8999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhH-----------------------Hh
Q psy16658         87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAI-----------------------IP  137 (318)
Q Consensus        87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~-----------------------~p  137 (318)
                      +++++.+++.|++.|++.+...+...+++.|++|+++|+++++      .+...+                       .+
T Consensus       102 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  181 (398)
T TIGR00895       102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP  181 (398)
T ss_pred             ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence            9999999999999999999999999999999999999998887      000000                       00


Q ss_pred             H-----HH---H-------HH------------------------h---hcc------------c---c-----------
Q psy16658        138 M-----FI---G-------EI------------------------A---ESS------------I---R-----------  149 (318)
Q Consensus       138 ~-----~~---~-------~~------------------------~---~~~------------~---~-----------  149 (318)
                      .     ..   +       +.                        .   +++            +   +           
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (398)
T TIGR00895       182 LLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFM  261 (398)
T ss_pred             HHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHH
Confidence            0     00   0       00                        0   000            0   0           


Q ss_pred             --------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccC
Q psy16658        150 --------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMED  203 (318)
Q Consensus       150 --------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (318)
                                                +.......++.+++.++.+++.||+++|+... ......+...++...      
T Consensus       262 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~------  334 (398)
T TIGR00895       262 LLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGST------  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH------
Confidence                                      35666777888899999999999999984433 333333332222221      


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        204 GKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFL  271 (318)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l  271 (318)
                          ....+......++.+.+.+...... .++..|.+|+++|+++.|+.+....++..++|.+.|.+
T Consensus       335 ----~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       335 ----LFSPTLLLLLGAIAGFFVNGGQSGL-YALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             ----hhCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                0112333444555555555444444 47889999999999999999999999999999998875

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=3.6e-22  Score=180.55  Aligned_cols=259  Identities=17%  Similarity=0.178  Sum_probs=183.3

Q ss_pred             ccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16658         15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF   94 (318)
Q Consensus        15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~   94 (318)
                      ...+|.+.++       +|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++++.++++++++.++
T Consensus        39 ~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~  111 (455)
T TIGR00892        39 TVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELY  111 (455)
T ss_pred             hhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence            3445666666       999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             H-HHHHHHhhccccccccchhhhhccCchhhhHHHH---------------------------------hhh---HhHHh
Q psy16658         95 A-ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------------------------------GGL---SAIIP  137 (318)
Q Consensus        95 ~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------------------------------~~~---~~~~p  137 (318)
                      + .|+++|++.+...+...+++.|+++ ++|+++.+                                 ...   ..+..
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~  190 (455)
T TIGR00892       112 LTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG  190 (455)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            5 5799999998877777888899996 78988887                                 000   00000


Q ss_pred             HHH----HH-----Hh--h---------c-------------------ccc-----------------------------
Q psy16658        138 MFI----GE-----IA--E---------S-------------------SIR-----------------------------  149 (318)
Q Consensus       138 ~~~----~~-----~~--~---------~-------------------~~~-----------------------------  149 (318)
                      ...    ++     .+  +         +                   +++                             
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  270 (455)
T TIGR00892       191 ALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD  270 (455)
T ss_pred             HHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            000    00     00  0         0                   000                             


Q ss_pred             --------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhhhhh--HHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658        150 --------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLLLSD--FVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS  217 (318)
Q Consensus       150 --------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
                              |....+.+++.++++++.+++.||.  ++|+......  +..+++.+....           ..+.+.....
T Consensus       271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------~~~~~~~~i~  339 (455)
T TIGR00892       271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-----------AGDYTGLVIY  339 (455)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-----------hchHHHHHHH
Confidence                    3666677788888899999999974  3333333222  222222222211           1123334444


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHH
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTL  293 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~  293 (318)
                      ..+.+.+.+..... ..+.+.|.+|+++++++.|+.+...++|..++|.+.|.+.|..+ |+..|++.+++.+++.+
T Consensus       340 ~~~~G~~~g~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       340 CIFFGLSFGSVGAL-LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHhchHHHH-HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            55555554443333 33777789999999999999999999999999999999999874 87888777666555444

>KOG1330|consensus

Probab=99.88  E-value=3.6e-22  Score=171.38  Aligned_cols=256  Identities=15%  Similarity=0.119  Sum_probs=176.2

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKN   89 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s   89 (318)
                      +......+.+..+..       +|++++..|++.+.+.+.+.+.+|+.|+++||++||+++.+|..++.++.++++++..
T Consensus        48 Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~  120 (493)
T KOG1330|consen   48 DRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH  120 (493)
T ss_pred             hhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH
Confidence            334444455555555       9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------------------hhh
Q psy16658         90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------------------GGL  132 (318)
Q Consensus        90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------------------~~~  132 (318)
                      ||+++++|.+.|+|.+...|+.+++++|.+|+.+|+++++                                     +++
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi  200 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVI  200 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHH
Confidence            9999999999999999999999999999999999999999                                     122


Q ss_pred             HhHHhHHH-HHHhh--------ccc----c--------------------------------------------------
Q psy16658        133 SAIIPMFI-GEIAE--------SSI----R--------------------------------------------------  149 (318)
Q Consensus       133 ~~~~p~~~-~~~~~--------~~~----~--------------------------------------------------  149 (318)
                      ..++-.++ .|.++        +.+    .                                                  
T Consensus       201 ~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~  280 (493)
T KOG1330|consen  201 VGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGF  280 (493)
T ss_pred             HHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCC
Confidence            22222222 22211        000    0                                                  


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHHHhhccCCe----ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658        150 -----GISAIIVGIVQFIMTALSVVLVDKAGRR----ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF  220 (318)
Q Consensus       150 -----g~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (318)
                           -++..+...++.+|...+|.++||+.|+    .......+.++.+..............   ..........+++
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~---~~~s~~~~~il~~  357 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF---TSSSMIFGLILFL  357 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHH
Confidence                 1556677788889999999999994321    222222222222222111111111100   1112223333344


Q ss_pred             HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q psy16658        221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNL  275 (318)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~  275 (318)
                      ++............-...|..||+.|.++.++-..+..+ |.+-+|++.|.+.|+.
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            443333333333335556889999999999999877654 5666777999999874

>TIGR00896 CynX cyanate transporter

Probab=99.88  E-value=3.7e-21  Score=168.76  Aligned_cols=245  Identities=16%  Similarity=0.139  Sum_probs=178.2

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKN   89 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s   89 (318)
                      ......|.+|.+.++       +|.+.++.+++.+.+.++..++.++.|++.||+||||++.++.++..++.+.+ .+++
T Consensus        15 ~~~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        15 ALTSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             ccccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            345667899999988       99999999999999999999999999999999999999999998888888777 7889


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH---------------------------
Q psy16658         90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII---------------------------  136 (318)
Q Consensus        90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~---------------------------  136 (318)
                      ++.+++.|++.|++.+...+....++.|++| ++|+++++      .+...+.                           
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999888888889999986 57887777      0000000                           


Q ss_pred             -h--HHHHHHhhc-------c---------cc-------------------------------------hHHHHHHHHHH
Q psy16658        137 -P--MFIGEIAES-------S---------IR-------------------------------------GISAIIVGIVQ  160 (318)
Q Consensus       137 -p--~~~~~~~~~-------~---------~~-------------------------------------g~~~~~~~~~~  160 (318)
                       .  ...++.+++       +         ++                                     |.......++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~  245 (355)
T TIGR00896       166 LALLAWIPQVRRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQ  245 (355)
T ss_pred             HHHHHHhhhhccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence             0  000111100       0         00                                     46777788899


Q ss_pred             HHHHHHHHHHhhccC-CeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec-
Q psy16658        161 FIMTALSVVLVDKAG-RRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG-  238 (318)
Q Consensus       161 ~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  238 (318)
                      ++++++.|++.||++ ||+.+..+.....++...+.+..          . ... .....+.+.+.+...+... .... 
T Consensus       246 i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~-~~~~~l~g~~~g~~~~~~~-~~~~~  312 (355)
T TIGR00896       246 AASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP----------M-HGL-WAWALVLGLGQGGAFPLAL-TLIGL  312 (355)
T ss_pred             HHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh----------h-hHH-HHHHHHHHHhhhhHhHHHH-HHHHH
Confidence            999999999999995 55566666666666555444321          0 111 1123344444433333222 3333 


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658        239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG  276 (318)
Q Consensus       239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  276 (318)
                      +..+++++++..++.+...+++..++|.+.|.+.|+.|
T Consensus       313 ~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       313 RSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33456777999999999999999999999999999887

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=3.2e-21  Score=172.34  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +...+......|.+|.+.++       ++.+.++.++..+.+.+++.++++++|+++||+||||++..+..+..++++++
T Consensus        26 ~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         26 FAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            33445667788999998888       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658         85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      .++++++.+++.|+++|++.+...+....++.|++|+++|++.++
T Consensus        99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (413)
T PRK15403         99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMA  143 (413)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999988767777888999999999988766

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.88  E-value=2.8e-21  Score=175.33  Aligned_cols=268  Identities=16%  Similarity=0.207  Sum_probs=202.8

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH--
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA--   87 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--   87 (318)
                      +..+....++-+..+       ..-|+..++++.++..+...+.++++|.++||++|||+++.+..+..+..+..++.  
T Consensus        25 G~~~~~va~~wlv~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~   97 (524)
T PF05977_consen   25 GDWMQTVALAWLVTQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAF   97 (524)
T ss_pred             HHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555       66788899999999999999999999999999999999999988877665555442  


Q ss_pred             ---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhHhHH-------hHHH---
Q psy16658         88 ---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLSAII-------PMFI---  140 (318)
Q Consensus        88 ---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~~~~-------p~~~---  140 (318)
                         .+.+.+++.-++.|++.+...|+.++++.|.+|+++...+.+              .++..++       .+.+   
T Consensus        98 ~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inal  177 (524)
T PF05977_consen   98 FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINAL  177 (524)
T ss_pred             hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence               467889999999999999999999999999999999887777              0000000       0000   


Q ss_pred             -------------HHHhhc---c----------------cc--------------------------------------h
Q psy16658        141 -------------GEIAES---S----------------IR--------------------------------------G  150 (318)
Q Consensus       141 -------------~~~~~~---~----------------~~--------------------------------------g  150 (318)
                                   .+.+++   +                ++                                      |
T Consensus       178 sfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yG  257 (524)
T PF05977_consen  178 SFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYG  257 (524)
T ss_pred             HHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHH
Confidence                         000000   0                00                                      6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      ++....+++.+++.++.+++.+|.++++.+..+.+..+++.+.+.+.           .+.+......++.+.+......
T Consensus       258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-----------~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-----------PSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999998888887777777766652           3345555556666666555444


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ... +..++..|++.||++++++.+....+..+|..+.|.+.|+.|.+..+.+.++..++..++..
T Consensus       327 ~~~-t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  327 SLN-TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHH-HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            444 77789999999999999999999999999999999999999988888766665555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=1.5e-21  Score=175.51  Aligned_cols=264  Identities=17%  Similarity=0.147  Sum_probs=193.9

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      ++.++......+.+|.++++       ++.++.+.|++.+.+.+++.+++++.|++.||+||||++..+..+++++++++
T Consensus        36 ~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~  108 (438)
T PRK10133         36 FLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            44566666777888998777       99999999999999999999999999999999999999999999999999875


Q ss_pred             ---HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhHhHH-----------
Q psy16658         85 ---LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLSAII-----------  136 (318)
Q Consensus        85 ---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~~~~-----------  136 (318)
                         .++++++.++++|+++|++.+...+..++++.|+.|+++|.+.++              .+...+.           
T Consensus       109 ~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~  188 (438)
T PRK10133        109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV  188 (438)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhh
Confidence               468899999999999999999999999999999887777765444              0100000           


Q ss_pred             ----------------------hHH--H---------------HHHh--h-c---------------ccc----------
Q psy16658        137 ----------------------PMF--I---------------GEIA--E-S---------------SIR----------  149 (318)
Q Consensus       137 ----------------------p~~--~---------------~~~~--~-~---------------~~~----------  149 (318)
                                            |..  .               +|.+  + +               +++          
T Consensus       189 ~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~  268 (438)
T PRK10133        189 LDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQF  268 (438)
T ss_pred             hhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHHHHHHHHH
Confidence                                  000  0               1100  0 0               001          


Q ss_pred             -----------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhh
Q psy16658        150 -----------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYM  200 (318)
Q Consensus       150 -----------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  200 (318)
                                                   |.......++.++++++.+++.||+++|+.+..+..+..+.+.+....   
T Consensus       269 ~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---  345 (438)
T PRK10133        269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---  345 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---
Confidence                                         466677888899999999999999999998887766655544433321   


Q ss_pred             ccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhh
Q psy16658        201 MEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAA  279 (318)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~  279 (318)
                              ... .......+.+.+.+..++... +...|..|++ .+++.++.. ....++.++|.+.|.+.|..| .+.
T Consensus       346 --------~~~-~~~~~~~l~glg~~~i~P~~~-s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~  413 (438)
T PRK10133        346 --------GGH-VGLIALTLCSAFMSIQYPTIF-SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPT  413 (438)
T ss_pred             --------CCh-HHHHHHHHHHHHHHHHHHHHH-HHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHH
Confidence                    011 223445556666666666555 6666766654 577888776 455788999999999999887 667


Q ss_pred             HHHHHHHHHHH
Q psy16658        280 TFWIFSVICFV  290 (318)
Q Consensus       280 ~~~~~~~~~~~  290 (318)
                      .|++.......
T Consensus       414 ~~~v~~~~~~~  424 (438)
T PRK10133        414 AELIPALCFAV  424 (438)
T ss_pred             HHHHHHHHHHH
Confidence            77654444333

>KOG2532|consensus

Probab=99.87  E-value=2.9e-21  Score=172.45  Aligned_cols=259  Identities=21%  Similarity=0.223  Sum_probs=186.4

Q ss_pred             cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhhcccc
Q psy16658         30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVLMLFAARFIAGVATGGL  107 (318)
Q Consensus        30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~  107 (318)
                      .+++++.+|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++.  +++.+++.|++||++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            46999999999999999999999999999999999999999999999999999999985  4467899999999999999


Q ss_pred             ccccchhhhhccCchhhhHHHH-------------------------------------hhhHhHHhHHH----------
Q psy16658        108 SAIIPMFIGEIAESSIRAGVAT-------------------------------------GGLSAIIPMFI----------  140 (318)
Q Consensus       108 ~~~~~~~i~~~~~~~~r~~~~~-------------------------------------~~~~~~~p~~~----------  140 (318)
                      +|+...+..+|.|++||++..+                                     +++..++...+          
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            9999999999999999998888                                     11111111111          


Q ss_pred             ---HHHhh---------ccc--c------------------------------------------------hHHHHHHHH
Q psy16658        141 ---GEIAE---------SSI--R------------------------------------------------GISAIIVGI  158 (318)
Q Consensus       141 ---~~~~~---------~~~--~------------------------------------------------g~~~~~~~~  158 (318)
                         +|.+.         .++  +                                                |+...+..+
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence               22211         000  0                                                789999999


Q ss_pred             HHHHHHHHHHHHhhccCCe--------e-hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        159 VQFIMTALSVVLVDKAGRR--------I-LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       159 ~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      ...+..+++|.++||..+|        | ...++....+++++.+.+.   .      ....+..+.++.+.....+...
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~---~------~~~~~~a~~~l~~~~~~~g~~~  376 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT---S------DEHRLLAVILLTIAIGLSGFNI  376 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec---C------CCcchHHHHHHHHHHHHcccch
Confidence            9999999999999998663        1 1123333333333333332   0      1112222322222222222211


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHhheec
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK---NLGSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                      .... .-..+. -|++.+..+|+.+....+.++++|.+.+.+..   ...|+..|.+.+++.+++.++..++-
T Consensus       377 ~Gf~-~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  377 SGFY-KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             hhhH-hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            1111 222222 56778999999999999999999999999983   34699999999999888876655553

>KOG0253|consensus

Probab=99.87  E-value=3.8e-21  Score=160.14  Aligned_cols=260  Identities=17%  Similarity=0.210  Sum_probs=201.6

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      ++.+..|..++....+.+..+++-.||..+|++||||.+....+...+...+.+.++++..+++.|.+.|+|.|+ .|..
T Consensus       108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~  186 (528)
T KOG0253|consen  108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVD  186 (528)
T ss_pred             hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHh
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             chhhhhccCchhhhHHHH---------------------------hhhHhHHhHHH------------------------
Q psy16658        112 PMFIGEIAESSIRAGVAT---------------------------GGLSAIIPMFI------------------------  140 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~---------------------------~~~~~~~p~~~------------------------  140 (318)
                      .++-.|..|..+|..-+-                           .+.....|..+                        
T Consensus       187 ~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kA  266 (528)
T KOG0253|consen  187 SAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKA  266 (528)
T ss_pred             HHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHH
Confidence            999999999888864332                           12222234433                        


Q ss_pred             -------------------------HHHhhc-------------ccc---------------------------------
Q psy16658        141 -------------------------GEIAES-------------SIR---------------------------------  149 (318)
Q Consensus       141 -------------------------~~~~~~-------------~~~---------------------------------  149 (318)
                                               ++.+++             +.+                                 
T Consensus       267 letL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~V  346 (528)
T KOG0253|consen  267 LETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSV  346 (528)
T ss_pred             HHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                                     000000             000                                 


Q ss_pred             -------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658        150 -------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLG  192 (318)
Q Consensus       150 -------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~  192 (318)
                                                           =.-..+..+...+|.++.+++.||+|||+++..+.++++++.+
T Consensus       347 Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflf  426 (528)
T KOG0253|consen  347 LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLF  426 (528)
T ss_pred             HHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence                                                 0445677889999999999999999999999999998888887


Q ss_pred             HHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        193 VLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV  272 (318)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~  272 (318)
                      .+....           ......+..+..-.+... .....+.|..|.+|+..|+++.|..+.+..+|+++.|.+.  +.
T Consensus       427 ll~~c~-----------~rn~~tvllf~arafisg-~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~  492 (528)
T KOG0253|consen  427 LLTTCK-----------TRNAYTVLLFTARAFISG-AFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MR  492 (528)
T ss_pred             HHHHhc-----------CcchhHHHHHHHHHHHhc-hheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HH
Confidence            776631           122223333333333333 3445569999999999999999999999999999999998  33


Q ss_pred             HHhchhhHHHHHHHHHHHHHHHhheeccCCCCCC
Q psy16658        273 KNLGSAATFWIFSVICFVGTLFTFVLVPETKGKT  306 (318)
Q Consensus       273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (318)
                      ..........+++++++++.+...++-.|+|+|+
T Consensus       493 ~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  493 AELSTSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            3333345666778888888887777667888775

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=9.4e-21  Score=168.45  Aligned_cols=273  Identities=14%  Similarity=0.165  Sum_probs=174.0

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHH-HHhhhhhhhhhhhhhhcchhHH-HHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAI-GAIFGALPAGSIADKFGRKPVI-LAFCIPFIISW   81 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~   81 (318)
                      .++.+.......|.+|.+..+.      +|.++++.|++.+...+ +..++.++.++ .||+||||.+ ..+.++.+++.
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~   96 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDE------VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC   96 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence            3455666677788888865442      89999999999876655 55555555555 9999999874 56667777888


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhH--HHH------hhhHhHHhH---------------
Q psy16658         82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAG--VAT------GGLSAIIPM---------------  138 (318)
Q Consensus        82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~--~~~------~~~~~~~p~---------------  138 (318)
                      .+.+++++++.+++.+.+.+...+...|...++..|+.++++|..  ..+      .+...+.|.               
T Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f  176 (393)
T PRK15011         97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY  176 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence            888899999988766555554446677888888899887766532  111      000001111               


Q ss_pred             --------------H--HHHHhhc------------cc-c--------------------------------------hH
Q psy16658        139 --------------F--IGEIAES------------SI-R--------------------------------------GI  151 (318)
Q Consensus       139 --------------~--~~~~~~~------------~~-~--------------------------------------g~  151 (318)
                                    .  .+|.+++            ++ +                                      |.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~  256 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGV  256 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence                          0  1211100            01 1                                      34


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658        152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP  231 (318)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (318)
                      ......+..+++.++.|+++||++||+.+..+.....+........           ...+..+....+.....+.....
T Consensus       257 ~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~l~~~~~g~~~~~  325 (393)
T PRK15011        257 MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----------HSPAILLGLQLLNAIYIGILGGI  325 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556677788999999999999987766544443332222110           11222222222222222222222


Q ss_pred             cceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        232 IPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      .. .+..|..|++ |+++.++++...++|..++|.+.|.+.|+.||+..+.+.....++..+..+
T Consensus       326 ~~-~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        326 GM-LYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HH-HHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            22 4557888754 899999999999999999999999999999998888776666666544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.87  E-value=4.8e-21  Score=170.76  Aligned_cols=258  Identities=19%  Similarity=0.162  Sum_probs=190.1

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+..|+..+...|.+|.++++       +|.++.+.|++.+.+.+++.+++++.|++.||+||||++..+..+.+++.++
T Consensus        12 f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885        12 FALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            345677788888999999888       8999999999999999999999999999999999999999999999999988


Q ss_pred             HHH---HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH---------------------
Q psy16658         84 ILF---AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS---------------------  133 (318)
Q Consensus        84 ~~~---~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~---------------------  133 (318)
                      ...   .++++.+++.|++.|++.|...+...+++.+..|+++|++.++      .++.                     
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            654   3689999999999999999999999999999999999987776      0000                     


Q ss_pred             --------------------hHHhHHH-----------------HHHh---hc------------ccc------------
Q psy16658        134 --------------------AIIPMFI-----------------GEIA---ES------------SIR------------  149 (318)
Q Consensus       134 --------------------~~~p~~~-----------------~~~~---~~------------~~~------------  149 (318)
                                          .-.|...                 +|.+   ++            +++            
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~y  244 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY  244 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHHHH
Confidence                                0011110                 1100   00            001            


Q ss_pred             ---------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhcc
Q psy16658        150 ---------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMME  202 (318)
Q Consensus       150 ---------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (318)
                                                 +...........+++++++++.||+++|+.+..+.....+++++....     
T Consensus       245 vg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----  319 (410)
T TIGR00885       245 VGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----  319 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----
Confidence                                       012333445567899999999999999998888777777666655542     


Q ss_pred             CCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Q psy16658        203 DGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL------G  276 (318)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g  276 (318)
                            . .........+.+.+.+..+ |..+....+..+++.+....++....  +|+.+.|++.|.+.|+.      +
T Consensus       320 ------~-~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~  389 (410)
T TIGR00885       320 ------G-GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPA  389 (410)
T ss_pred             ------C-ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCc
Confidence                  1 1122455555566665556 44447777888877654455544443  99999999999999964      3


Q ss_pred             hhhHHHH
Q psy16658        277 SAATFWI  283 (318)
Q Consensus       277 ~~~~~~~  283 (318)
                      .+..|.+
T Consensus       390 ~~~~~~~  396 (410)
T TIGR00885       390 VNTSFIL  396 (410)
T ss_pred             cchHHHH
Confidence            5555654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0255|consensus

Probab=99.87  E-value=6.5e-20  Score=168.95  Aligned_cols=272  Identities=25%  Similarity=0.329  Sum_probs=204.0

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      ++.+.....+..+++.+|..++++++|.++||+|||++++++.++..++.+..++++|++.+++.|+++|++.+......
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence            66788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhccCchhhhHHHHh-----hhHh--------------------HHhH--------HH------------------
Q psy16658        112 PMFIGEIAESSIRAGVATG-----GLSA--------------------IIPM--------FI------------------  140 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~~-----~~~~--------------------~~p~--------~~------------------  140 (318)
                      ..++.|++++|+|+.+...     .+..                    ..|.        +.                  
T Consensus       193 ~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~  272 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK  272 (521)
T ss_pred             HhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence            9999999999999988771     0000                    0000        00                  


Q ss_pred             --HHHhh--------------c------c-----c-c-------------------------------------------
Q psy16658        141 --GEIAE--------------S------S-----I-R-------------------------------------------  149 (318)
Q Consensus       141 --~~~~~--------------~------~-----~-~-------------------------------------------  149 (318)
                        ++..+              .      .     + .                                           
T Consensus       273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~  352 (521)
T KOG0255|consen  273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNI  352 (521)
T ss_pred             HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchH
Confidence              00000              0      0     0 0                                           


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      .......+....+.....+...|+.|||.....+.....++++...+......        .+.......+...+...++
T Consensus       353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  424 (521)
T KOG0255|consen  353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG--------GWLHWILPLLGKFFIGSAF  424 (521)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch--------hHHHHHHHHHHHHHHHHHH
Confidence            14555555677777888889999999999999999998888888877532211        0223444444444455555


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQ  309 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (318)
                      ... +.+..|++|+..|+.+.+..+....++.+++|.+.-.... ......+.+++....+..++...++||++++...+
T Consensus       425 ~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~  502 (521)
T KOG0255|consen  425 NLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG  502 (521)
T ss_pred             HHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence            555 4888999999999999999999999999999988754444 22222333346666666677767899998877654


Q ss_pred             HHHH
Q psy16658        310 IQRE  313 (318)
Q Consensus       310 ~~~~  313 (318)
                      ..++
T Consensus       503 t~~~  506 (521)
T KOG0255|consen  503 TLLD  506 (521)
T ss_pred             hHHH
Confidence            4333

>KOG3764|consensus

Probab=99.86  E-value=1.9e-21  Score=163.64  Aligned_cols=262  Identities=19%  Similarity=0.112  Sum_probs=188.4

Q ss_pred             cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccc
Q psy16658         30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSA  109 (318)
Q Consensus        30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~  109 (318)
                      ++.+.+++++|++.+...+...+.+++.|.+.||+|+|-.++++...+..++++.++.++|+.+++.|.+||+|.+...+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhccCchh-hhHHHH------hhhHhHHhHHH-------------------------------H--HHhh----
Q psy16658        110 IIPMFIGEIAESSI-RAGVAT------GGLSAIIPMFI-------------------------------G--EIAE----  145 (318)
Q Consensus       110 ~~~~~i~~~~~~~~-r~~~~~------~~~~~~~p~~~-------------------------------~--~~~~----  145 (318)
                      +..++++|.+|+++ |++++|      +++..+.|.+.                               +  |.++    
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~  258 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE  258 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccc
Confidence            99999999999776 699999      11111111110                               0  1111    


Q ss_pred             -cccc---------------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh
Q psy16658        146 -SSIR---------------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRIL  179 (318)
Q Consensus       146 -~~~~---------------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  179 (318)
                       .+++                                             |..+....+...++..+.|.++||++..+.
T Consensus       259 ~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w  338 (464)
T KOG3764|consen  259 QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW  338 (464)
T ss_pred             cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence             0000                                             566777888899999999999999995444


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchh---hhhhHHHHHHHH
Q psy16658        180 LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPE---VKGSATGIAVAL  256 (318)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~  256 (318)
                      +.....+...+......+..   +.   -...|.......+.+........|.. .++.|....+   ..|.+.++....
T Consensus       339 l~~~~gl~~~G~~~~~iP~~---~~---~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a  411 (464)
T KOG3764|consen  339 LLSLGGLATVGVSSGPIPFA---TS---IAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAA  411 (464)
T ss_pred             HHHHHHHHHHHHHhchhHhh---hh---HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHH
Confidence            43322222222222221110   00   01122333333344444444445555 3444544444   678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658        257 NWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       257 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      ..++.++||.+.|.+.+..|++|...+.+...+...-++..+
T Consensus       412 ~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  412 FSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888887766555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.86  E-value=2e-20  Score=167.86  Aligned_cols=275  Identities=14%  Similarity=0.088  Sum_probs=169.8

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL   85 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~   85 (318)
                      +.....+...|.+|.+.++.      +|+++.+.|++.+.+.++..++++++|+++||+||||++.++..+..+......
T Consensus        21 ~~~~~~~~~~~~~~~~l~~~------~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   94 (420)
T PRK09528         21 FFFFIWSSWFSFFPIWLHDI------NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFF   94 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            33444556677777776653      899999999999999999999999999999999999998887666554433211


Q ss_pred             ---HHhh-----HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------
Q psy16658         86 ---FAKN-----VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-----------  140 (318)
Q Consensus        86 ---~~~s-----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-----------  140 (318)
                         .++.     .....+.++..|.+.....+....+..+. + +++++.++      .++..+.|.+.           
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~  172 (420)
T PRK09528         95 IYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-S-RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQIN  172 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-H-hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHh
Confidence               1111     11122334444443333333333332222 1 22332222      00111111000           


Q ss_pred             ----------------------HHHh-----h---cc------------cc-----------------------------
Q psy16658        141 ----------------------GEIA-----E---SS------------IR-----------------------------  149 (318)
Q Consensus       141 ----------------------~~~~-----~---~~------------~~-----------------------------  149 (318)
                                            ++..     +   ++            ++                             
T Consensus       173 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~  252 (420)
T PRK09528        173 FWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFAS  252 (420)
T ss_pred             HHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  1100     0   00            11                             


Q ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658        150 ------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS  217 (318)
Q Consensus       150 ------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
                                  |....+..+...++.++.|++.||+++|+.+..+..+..+...+..+.           .+.+.....
T Consensus       253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----------~~~~~~~~~  321 (420)
T PRK09528        253 FFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----------TGPLEVSIL  321 (420)
T ss_pred             HHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----------ccHHHHHHH
Confidence                        233444555677888999999999999999888777777766655542           223333443


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGI-AVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ..+.+........... .+..|.+|++.|++..+. .+....+|..++|.+.|.+.|..||+..|...+.+..+..++.+
T Consensus       322 ~~l~g~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        322 KLLHAFEVPFLLVGVF-KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            4444444333323233 667788899999888766 67778899999999999999999999999888887776665555


Q ss_pred             eecc
Q psy16658        297 VLVP  300 (318)
Q Consensus       297 ~~~~  300 (318)
                      ...+
T Consensus       401 ~~~~  404 (420)
T PRK09528        401 FTLS  404 (420)
T ss_pred             HHhc
Confidence            4443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.85  E-value=4.1e-20  Score=163.70  Aligned_cols=264  Identities=16%  Similarity=0.043  Sum_probs=194.3

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHH----HHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVI----LAFCIPFIIS   80 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~~~   80 (318)
                      +......+...|.+|.+.+|       +|.|.+++|++.+.+.+...++++++|.++||+|||+..    ..+..+..+ 
T Consensus        14 ~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902        14 FGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            34445667888999999988       899999999999999999999999999999999985432    222222222 


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH---------------
Q psy16658         81 WVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF---------------  139 (318)
Q Consensus        81 ~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~---------------  139 (318)
                       ..+..+++++.+++.|.++|.+.+...|...++..|+  +++|++..+      .++..+.|.+               
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence             2444678999999999999999998899988887765  456665555      1111111111               


Q ss_pred             --------------H-HHHhhc------------------ccc-------------------------------------
Q psy16658        140 --------------I-GEIAES------------------SIR-------------------------------------  149 (318)
Q Consensus       140 --------------~-~~~~~~------------------~~~-------------------------------------  149 (318)
                                    . ++.+++                  +++                                     
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~  242 (382)
T TIGR00902       163 ILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASAT  242 (382)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHH
Confidence                          0 110000                  000                                     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......+..++..++.+++.||+++|+.+..+.....+....+...           ++.+.......+.+..++...
T Consensus       243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~q~l~g~~~~~~~  311 (382)
T TIGR00902       243 GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----------EAFPLIFLLQILHCGTFAVCH  311 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----------hhHHHHHHHHHHHHHHHHHHH
Confidence            567777888888899999999999999999998888888777766542           334555666777777777766


Q ss_pred             cccceeeeccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVA-LNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL  293 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  293 (318)
                      .... .++.+. |+++|+++.++++. ...+|..++|.+.|.+.|+.|+ ..|...+.+.+++.+
T Consensus       312 ~~~~-~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       312 LAAM-RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHH-HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            6655 777777 99999999999875 5678999999999999999986 667777776665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=3.3e-20  Score=169.09  Aligned_cols=277  Identities=13%  Similarity=0.122  Sum_probs=190.2

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchhH-HHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-----GRKPV-ILAFCIPFI   78 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~   78 (318)
                      +..|...+...+.+|.+.++       .|.+.+++|.+ +.....+ +..+++|+++||+     ||||. +..+.+..+
T Consensus        22 ~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         22 FASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            34566777778888888888       78999999997 4444444 5899999999999     99985 667777777


Q ss_pred             HHHHHHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH----------------
Q psy16658         79 ISWVLILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS----------------  133 (318)
Q Consensus        79 ~~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~----------------  133 (318)
                      ++....++.   ++++.+.+.+++.+++.+...+...++..|++|+|||+++.+      .++.                
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            777777775   478889999999999999999999999999999999998777      0000                


Q ss_pred             -----------hHHhH----HHHHHh-----hc---------------ccc-----------------------------
Q psy16658        134 -----------AIIPM----FIGEIA-----ES---------------SIR-----------------------------  149 (318)
Q Consensus       134 -----------~~~p~----~~~~~~-----~~---------------~~~-----------------------------  149 (318)
                                 ..+..    ..+|.+     ++               +++                             
T Consensus       173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~  252 (491)
T PRK11010        173 WQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG  252 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       00000    001110     00               000                             


Q ss_pred             --------hHHH-HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658        150 --------GISA-IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF  220 (318)
Q Consensus       150 --------g~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (318)
                              |... ....++.+++.++.|++.||+++|+.+..+..+..+....+..... .      ..+.+.......+
T Consensus       253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~------~~~~~~l~~~~~l  325 (491)
T PRK11010        253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-T------DKNLYSMGAAVFF  325 (491)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-c------cccHHHHHHHHHH
Confidence                    3443 3445678899999999999999988777655544444333222111 0      0112222222233


Q ss_pred             HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658        221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      .....+...... ++...+..|++.+++..|+.+....+|..+++.+.|.+.|..||+..|.+..++++.+.++.+..
T Consensus       326 ~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        326 ENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222223 36667888898999999999999999999999999999999999888888888777776655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.84  E-value=5.7e-20  Score=163.52  Aligned_cols=251  Identities=18%  Similarity=0.145  Sum_probs=170.6

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~   87 (318)
                      .+......|.+|.+.++       +|.++.+.+++.+.+.++..++.+++|+++||+||||++..+..+..++.+...++
T Consensus        21 ~~~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~   93 (394)
T PRK11652         21 QMAQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA   93 (394)
T ss_pred             HHHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            34455667888888888       89999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH-----------------------
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM-----------------------  138 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~-----------------------  138 (318)
                      ++++.+++.|++.|++.+...+....+..|.+++++|+++.+      .+...+.|.                       
T Consensus        94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~  173 (394)
T PRK11652         94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGA  173 (394)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            999999999999999988888888889999999999987765      000000000                       


Q ss_pred             --------HHHHHhh----c-----------ccc--------------------------------------hHHHHHHH
Q psy16658        139 --------FIGEIAE----S-----------SIR--------------------------------------GISAIIVG  157 (318)
Q Consensus       139 --------~~~~~~~----~-----------~~~--------------------------------------g~~~~~~~  157 (318)
                              ..+|.++    +           +++                                      |.......
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  253 (394)
T PRK11652        174 GVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPI  253 (394)
T ss_pred             HHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHH
Confidence                    0011100    0           000                                      23334445


Q ss_pred             HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeee
Q psy16658        158 IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMV  237 (318)
Q Consensus       158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (318)
                      .+..++..+.+++.||.+++.  .............+.......      ....+.......+.+.+.+...+... .+.
T Consensus       254 ~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  324 (394)
T PRK11652        254 PAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPGWFG------VMNVWTLLVPAALFFFGAGMLFPLAT-SGA  324 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            555666677777777776322  222222222222211111000      11223334444555555555444444 666


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658        238 GELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL  275 (318)
Q Consensus       238 ~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~  275 (318)
                      .|..| ++++++.++.+....+|..+++.+.+.+.++.
T Consensus       325 ~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        325 MEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             Hhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            67776 56899999999999999999999988776553

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.83  E-value=6.4e-20  Score=161.46  Aligned_cols=236  Identities=17%  Similarity=0.137  Sum_probs=167.8

Q ss_pred             ccccccccccccc-ccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPI-LTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF   86 (318)
Q Consensus         8 ~~~~~~~~~~lp~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~   86 (318)
                      ........+.+|. +.++       +|+++.+.+++.+.+.++..++.+++|+++||+|||+.+.++..+..++.+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~   86 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL   86 (366)
T ss_pred             HHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3344556778885 6666       9999999999999999999999999999999999999999999999999999999


Q ss_pred             Hh-hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------------------hhhH--------------
Q psy16658         87 AK-NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------------------GGLS--------------  133 (318)
Q Consensus        87 ~~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------------------~~~~--------------  133 (318)
                      ++ +++.+++.|+++|++.+ ..+...+++.|++|+|+|+++++                  .+..              
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w  165 (366)
T TIGR00886        87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW  165 (366)
T ss_pred             HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99 99999999999999855 45667899999999999998877                  0000              


Q ss_pred             --------hHHhHHH--------HH--------Hhhc--------------c------cc--------------------
Q psy16658        134 --------AIIPMFI--------GE--------IAES--------------S------IR--------------------  149 (318)
Q Consensus       134 --------~~~p~~~--------~~--------~~~~--------------~------~~--------------------  149 (318)
                              .....+.        +|        .+.+              +      ++                    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (366)
T TIGR00886       166 GWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVS  245 (366)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence                    0000000        00        0000              0      00                    


Q ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccc
Q psy16658        150 ------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSIS  211 (318)
Q Consensus       150 ------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (318)
                                        |....+..+.+++++++.|++.||+++|+.+..+......+..++......       ....
T Consensus       246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  318 (366)
T TIGR00886       246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS-------PLSL  318 (366)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC-------cchH
Confidence                              356667778888999999999999999987776665555544444332100       0012


Q ss_pred             hhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHH
Q psy16658        212 FLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWIS  260 (318)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g  260 (318)
                      +.......+.....+....... ....|..| +++|+++|+.+..+++|
T Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       319 AVFIVLFVALFFFSGAGNGSTF-ALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHhccccchhh-hcchhhch-hhcccHHHHHHHhccCC
Confidence            2223333333344444444333 67778776 57999999999887765

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.83  E-value=2.6e-19  Score=159.73  Aligned_cols=271  Identities=15%  Similarity=0.137  Sum_probs=179.4

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchh-HHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-----GRKP-VILAFCIPFII   79 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~   79 (318)
                      ..|+..+.....+|.+.++       .|.+.+++|++......  .+..+++|+++||+     |||| .+.++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902         10 ASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            4566777788889999999       89999999999776665  58899999999999     8876 68888888888


Q ss_pred             HHHHHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hh-----------
Q psy16658         80 SWVLILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GG-----------  131 (318)
Q Consensus        80 ~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~-----------  131 (318)
                      +.....+.   ++++.+.+..++.+...+...++..+++.|++|+|||+++.+              .+           
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            88887776   357778888888888888889999999999999999998777              00           


Q ss_pred             -----hHh---H---HhHH-HHHHh-----hc--------------ccc-------------------------------
Q psy16658        132 -----LSA---I---IPMF-IGEIA-----ES--------------SIR-------------------------------  149 (318)
Q Consensus       132 -----~~~---~---~p~~-~~~~~-----~~--------------~~~-------------------------------  149 (318)
                           ..+   .   .+.. .+|.+     ++              +++                               
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~  240 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGA  240 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence                 000   0   0000 01110     00              000                               


Q ss_pred             -------hHHHHHHH-HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH-
Q psy16658        150 -------GISAIIVG-IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF-  220 (318)
Q Consensus       150 -------g~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  220 (318)
                             |......+ .+.+++.++.+++.||+++|+.+..+.....+..+.+.......       .+.+.......+ 
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------~~~~~~~~~~~~~  313 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-------KHLWTMALAIGIE  313 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHH
Confidence                   23332323 35778899999999999999887766555544433332211110       112222222222 


Q ss_pred             ---HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        221 ---FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       221 ---~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                         .+..... .......++.+.+|.+.    .+..+....++...++.+.|.+.|+.||+..|...+.+++++.++.+.
T Consensus       314 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        314 NLCGGMGTAA-FVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHH-HHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence               1222222 22233366667666554    455555666777767778999999999998888887777776555433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.82  E-value=5.9e-19  Score=159.12  Aligned_cols=253  Identities=17%  Similarity=0.177  Sum_probs=174.6

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchh-HHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKP-VILAFCIPFIISWV   82 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~   82 (318)
                      +...+...+.++.+..+.      +|+++.+.|++.++..+...+..|+.|+++||    +|||| .++.+....+++.+
T Consensus        12 ~~~~~~~~~~l~~~~~~~------~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~   85 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDV------LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLV   85 (437)
T ss_pred             HHHHHHHHHHHHHHHHHc------cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHH
Confidence            333444444444444432      89999999999999999999999999999998    67755 56778888888888


Q ss_pred             HHHHHhh------HHHHHHHHHHHHhhccccccccchhhhhcc-CchhhhHHHH---------hhhH--hHHhHH-----
Q psy16658         83 LILFAKN------VLMLFAARFIAGVATGGLSAIIPMFIGEIA-ESSIRAGVAT---------GGLS--AIIPMF-----  139 (318)
Q Consensus        83 ~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~---------~~~~--~~~p~~-----  139 (318)
                      ++...++      ...+++.+++.+++.+...+...++..|.. +++||++..+         ....  ...|..     
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~  165 (437)
T TIGR00792        86 LLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG  165 (437)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7777654      456677888899988888888888999987 5688887766         0000  000110     


Q ss_pred             ------------H----------------HHHh----h--cc-------------cc-----------------------
Q psy16658        140 ------------I----------------GEIA----E--SS-------------IR-----------------------  149 (318)
Q Consensus       140 ------------~----------------~~~~----~--~~-------------~~-----------------------  149 (318)
                                  .                +|.+    +  ++             ++                       
T Consensus       166 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (437)
T TIGR00792       166 GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQ  245 (437)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchh
Confidence                        0                2111    0  00             11                       


Q ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHH
Q psy16658        150 --------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPL  215 (318)
Q Consensus       150 --------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (318)
                                    +....+..+..+++.++.+++.||+|+|+.+..+..+..++.+.+.+..          ...+...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  315 (437)
T TIGR00792       246 VYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG----------SNLPLIL  315 (437)
T ss_pred             heeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----------hhHHHHH
Confidence                          2445556788888999999999999999999888777766665544320          1122333


Q ss_pred             HHHHHHHHHHHhcccccceeeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        216 LSVIFFIVMFSLGYGPIPWMMVGELFA-------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                      ....+.+.+.+... +..++..+|..|       ++.+|+..|+.+....++..+++.+.|.+.+..|+
T Consensus       316 ~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       316 VLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33444444444333 334466666654       55679999999999999999999999999998776

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.82  E-value=9.4e-19  Score=155.06  Aligned_cols=261  Identities=14%  Similarity=0.079  Sum_probs=178.4

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcch----hHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRK----PVILAFCIPFIISW   81 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~   81 (318)
                      .+..+.+...|.+|.+.+|       ++.|.+++|++.+++.++..++++++|++.||+|||    +.+.+...+.  ..
T Consensus        15 ~~~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~   85 (382)
T PRK11128         15 GYFFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AV   85 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HH
Confidence            3445678888999999988       899999999999999999999999999999999984    3333222221  22


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH----------------------
Q psy16658         82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS----------------------  133 (318)
Q Consensus        82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~----------------------  133 (318)
                      .....+++++.+++.|++.|++.+...|...++..++.+  +|++..+      .+..                      
T Consensus        86 ~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         86 AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            233446889999999999999999999988888887743  3443322      0000                      


Q ss_pred             ----hHHhHHH----HHHh-----hcc-------------cc-------------------------------------h
Q psy16658        134 ----AIIPMFI----GEIA-----ESS-------------IR-------------------------------------G  150 (318)
Q Consensus       134 ----~~~p~~~----~~~~-----~~~-------------~~-------------------------------------g  150 (318)
                          ...+.+.    +|.+     +++             ++                                     |
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g  243 (382)
T PRK11128        164 LTAGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIG  243 (382)
T ss_pred             HHHHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHH
Confidence                1111110    1100     000             00                                     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .......+..++..++.+++.||+++|+.+..+.....++...+...           ++.+.......+.+........
T Consensus       244 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        244 YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-----------TALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHH
Confidence            55566677788888899999999999999888877777766555432           2344455556666666665444


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVAL-NWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVG  291 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  291 (318)
                      ... .+..+. +++++++..+..+.. ...|..++|.+.|.+.|+.|. ..+...+.+.+.+
T Consensus       313 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        313 AAM-RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHH-HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            444 566565 566678899988744 456778999999999999887 4555555554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.82  E-value=1.6e-18  Score=173.87  Aligned_cols=242  Identities=17%  Similarity=0.125  Sum_probs=172.0

Q ss_pred             CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL---FAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      +....+++.+++.++..++++++|+++||+|||++++++.++..+..++..   .+++++.+++.|+++|++.+...++.
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence            344579999999999999999999999999999999998877666555444   45789999999999999999999999


Q ss_pred             chhhhhccCchhhhHHHH--------------hhhHhHHhH-----------------HH---------------HHHhh
Q psy16658        112 PMFIGEIAESSIRAGVAT--------------GGLSAIIPM-----------------FI---------------GEIAE  145 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~--------------~~~~~~~p~-----------------~~---------------~~~~~  145 (318)
                      .+++.|++|+++|+++++              .+...+...                 +.               ++..+
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA  204 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            999999999999999888              000000000                 00               10000


Q ss_pred             ---c---------------------ccc---------------------------------------hHHHHHHHHHHHH
Q psy16658        146 ---S---------------------SIR---------------------------------------GISAIIVGIVQFI  162 (318)
Q Consensus       146 ---~---------------------~~~---------------------------------------g~~~~~~~~~~~~  162 (318)
                         +                     +++                                       |++.....++.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~  284 (1146)
T PRK08633        205 AAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGI  284 (1146)
T ss_pred             CCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence               0                     000                                       3455666777788


Q ss_pred             HHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc
Q psy16658        163 MTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA  242 (318)
Q Consensus       163 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  242 (318)
                      +.++.+++.||+++++.+.++.+..+++.+++...           ...+..++..++++.+.+....+.. +++.+..|
T Consensus       285 g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p  352 (1146)
T PRK08633        285 GSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-----------PSLASVLVLFFLFGFSAGLFIVPLN-ALIQFRAP  352 (1146)
T ss_pred             HHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHhhHHHH-HHHhhcCC
Confidence            99999999999998888877776666666555442           1233444555555555555444444 77788999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHH
Q psy16658        243 PEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVIC  288 (318)
Q Consensus       243 ~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~  288 (318)
                      ++.|++++|+.+.+..++..+++.+.+.+... .++...+.+.+.+.
T Consensus       353 ~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        353 EKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            99999999999999999988887776655432 23333444444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.81  E-value=1.3e-18  Score=154.87  Aligned_cols=273  Identities=12%  Similarity=0.139  Sum_probs=178.0

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL   85 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~   85 (318)
                      +.....+...|.+|.+.++.      +|.++.+.|++.+.+.++..++++++|+++||+||||.++.+....+++.....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   86 (396)
T TIGR00882        13 LYFFIMSAYFPFFPIWLHDV------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFF   86 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            34445566778888776653      899999999999999999999999999999999999999887666655443221


Q ss_pred             ---HH-----hhHHHHHHHHHHHHhhccccccccchhhhhccCchhh--hH--HHHhhhHh-------------------
Q psy16658         86 ---FA-----KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIR--AG--VATGGLSA-------------------  134 (318)
Q Consensus        86 ---~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~--~~~~~~~~-------------------  134 (318)
                         +.     +.+..+++.|++.|++.+...+....+..|..+++.+  ++  ..+.++..                   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~  166 (396)
T TIGR00882        87 IYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFW  166 (396)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHH
Confidence               11     2234456778899999888888888777775443311  11  11100000                   


Q ss_pred             ---HHhH------HH--HH---Hh---------hcc-----------cc-------------------------------
Q psy16658        135 ---IIPM------FI--GE---IA---------ESS-----------IR-------------------------------  149 (318)
Q Consensus       135 ---~~p~------~~--~~---~~---------~~~-----------~~-------------------------------  149 (318)
                         .++.      ..  +|   .+         +++           ++                               
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~  246 (396)
T TIGR00882       167 LGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFF  246 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               0000      00  11   00         000           11                               


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHH
Q psy16658        150 ----------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVI  219 (318)
Q Consensus       150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (318)
                                |....+..+...++.+..+++.||+++|+.+..+..+.++...+....           .+.+.......
T Consensus       247 ~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-----------~~~~~~~~~~~  315 (396)
T TIGR00882       247 ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-----------TTALEVVILKM  315 (396)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-----------CChHHHHHHHH
Confidence                      233344445566777888999999999999888777666655543331           22333344444


Q ss_pred             HHHHHHHhcccccceeeeccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        220 FFIVMFSLGYGPIPWMMVGELFAPEVKGSATGI-AVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      +.+........ ....+..+..|++.+++..+. .+....+|..+++.+.|.+.|..|++..|.+.+.+..+..++..
T Consensus       316 l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       316 LHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            44443332222 222455666788888887766 67788999999999999999999999999888887766655543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.80  E-value=2.4e-18  Score=156.19  Aligned_cols=286  Identities=12%  Similarity=0.056  Sum_probs=199.4

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILF   86 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~   86 (318)
                      .+.+....+.+|.+.++    ..++|++..+.+++.+.+.++..++++++|+++|| +||||++.++..+.+++.++.++
T Consensus        23 ~~~~~~~~~~L~~yl~~----~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~   98 (475)
T TIGR00924        23 RFSYYGMQGILAVYLVQ----QAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM   98 (475)
T ss_pred             HHHHHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence            34445566777777654    12378999999999999999999999999999999 89999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhhccccccccchhhhhccCchh---hhHHHH------hhhHhHHhH-------------------
Q psy16658         87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSI---RAGVAT------GGLSAIIPM-------------------  138 (318)
Q Consensus        87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~------~~~~~~~p~-------------------  138 (318)
                      +++++.+.+.|.+.|++.|...+...++++|++|+++   |+++.+      .++..+.|.                   
T Consensus        99 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924        99 SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            9999999999999999999999999999999998764   655444      000000000                   


Q ss_pred             ----------HH-H---------------HH-------------------------------------------------
Q psy16658        139 ----------FI-G---------------EI-------------------------------------------------  143 (318)
Q Consensus       139 ----------~~-~---------------~~-------------------------------------------------  143 (318)
                                .. .               +.                                                 
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (475)
T TIGR00924       179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLA  258 (475)
T ss_pred             HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence                      00 0               00                                                 


Q ss_pred             hh------cccc--------------------------------------------hHHHHHHHHHHHHHHHHHHH----
Q psy16658        144 AE------SSIR--------------------------------------------GISAIIVGIVQFIMTALSVV----  169 (318)
Q Consensus       144 ~~------~~~~--------------------------------------------g~~~~~~~~~~~~~~~~~g~----  169 (318)
                      .+      ++++                                            +.+..++.+.-++..++..+    
T Consensus       259 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~  338 (475)
T TIGR00924       259 FKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTR  338 (475)
T ss_pred             HhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            00      0011                                            25566666666666666444    


Q ss_pred             Hhhc-cCCeehh--hhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhh
Q psy16658        170 LVDK-AGRRILL--LLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVK  246 (318)
Q Consensus       170 l~d~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  246 (318)
                      +.|| .+.+...  ..+.++.++++..+.........  ....+.++.+....+.+.+.....+... ++..|..|++.|
T Consensus       339 l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~~~~~ge~~~~p~~~-~~~~~~aP~~~~  415 (475)
T TIGR00924       339 LGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA--GGLTSPWFMVLIYLFQTLGELMISPLGL-SWWTKIAPQRLM  415 (475)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCHHHH
Confidence            3333 2223333  56677777776666543221111  1124556666677777776666544444 888999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        247 GSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       247 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      |+++|+......+|..+++.+.....+..++...+...+....+..++.++..|
T Consensus       416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887777767766676666666655555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.80  E-value=3.7e-18  Score=171.00  Aligned_cols=250  Identities=12%  Similarity=0.070  Sum_probs=170.1

Q ss_pred             ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccch
Q psy16658         37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILA---FCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPM  113 (318)
Q Consensus        37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~  113 (318)
                      ...++..+++.+++.+.++++|+++||+|||+++..   ..+......+.....+|++.+++.|+++|++.+...|+..+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457888999999999999999999999999997543   22233333333334589999999999999999999999999


Q ss_pred             hhhhccCchhhhHHHH------hhhHhHHhHHH------------------------------HHHhh-----c------
Q psy16658        114 FIGEIAESSIRAGVAT------GGLSAIIPMFI------------------------------GEIAE-----S------  146 (318)
Q Consensus       114 ~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------------------~~~~~-----~------  146 (318)
                      ++.|++|+++|+++++      .+...+.|.+.                              ++.++     +      
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNII  211 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchH
Confidence            9999999999999888      00000000000                              00000     0      


Q ss_pred             -----------ccc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658        147 -----------SIR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRR  177 (318)
Q Consensus       147 -----------~~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~  177 (318)
                                 +++                                      |......+++.+++.++.|++.||..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        212 RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence                       000                                      5777888899999999999999888777


Q ss_pred             ehhhhhhHHHHHHHHHHHHhhhhccCCC---------CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhh
Q psy16658        178 ILLLLSDFVMALCLGVLGFYFYMMEDGK---------DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGS  248 (318)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  248 (318)
                      +.+..+.++.+++.+.+.+.........         ......+...+..++++.+.+....+.. +.+.+..|++.||+
T Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~G~  370 (1140)
T PRK06814        292 LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF-AALQAWANPAHRAR  370 (1140)
T ss_pred             eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH-HHHHhhCCccccee
Confidence            7666555555544443333100000000         0012234445555556665555555544 78889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHH
Q psy16658        249 ATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVI  287 (318)
Q Consensus       249 ~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~  287 (318)
                      ++|..+....++..+++.+.+.+.+. .++...+.+.+.+
T Consensus       371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999999999999998754 3454444444443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.78  E-value=1.2e-17  Score=151.90  Aligned_cols=266  Identities=12%  Similarity=0.011  Sum_probs=181.2

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhhcccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAKNVLM-LFAARFIAGVATGGLSA  109 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~s~~~-l~~~r~l~G~~~g~~~~  109 (318)
                      +|.++++.+++.+.+.....+..+++|+++|| +||||+++++.+++.++++.++++++... +.+.|.++|+|.|...|
T Consensus        45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~  124 (489)
T PRK10207         45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA  124 (489)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence            89999999999999998888889999999999 99999999999999999999999876444 55899999999999999


Q ss_pred             ccchhhhhccCchh--hhHHHH------hhhHhHHhHH------------------------H----------H------
Q psy16658        110 IIPMFIGEIAESSI--RAGVAT------GGLSAIIPMF------------------------I----------G------  141 (318)
Q Consensus       110 ~~~~~i~~~~~~~~--r~~~~~------~~~~~~~p~~------------------------~----------~------  141 (318)
                      ...+++.|.+|+++  |+++++      .++..+.|.+                        +          +      
T Consensus       125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~  204 (489)
T PRK10207        125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEP  204 (489)
T ss_pred             CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCC
Confidence            99999999998875  344333      0000000000                        0          0      


Q ss_pred             ----------------------------------------------------HHhhc---ccc-----------------
Q psy16658        142 ----------------------------------------------------EIAES---SIR-----------------  149 (318)
Q Consensus       142 ----------------------------------------------------~~~~~---~~~-----------------  149 (318)
                                                                          +.+.+   ++|                 
T Consensus       205 ~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~  284 (489)
T PRK10207        205 DHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYIL  284 (489)
T ss_pred             CccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                00000   011                 


Q ss_pred             ---------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh-------hhhhhHHHHHHHHHHH
Q psy16658        150 ---------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRIL-------LLLSDFVMALCLGVLG  195 (318)
Q Consensus       150 ---------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~~~  195 (318)
                                                 .....++.+..++..++.+++.||.++|+.       +..+.++.+++++.+.
T Consensus       285 ~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~  364 (489)
T PRK10207        285 YAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA  364 (489)
T ss_pred             HHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence                                       123333456666778888999999998873       6667777666655443


Q ss_pred             HhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16658        196 FYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK--  273 (318)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~--  273 (318)
                      .......... ...+.++......+.+.+.....++.. ..+.+..|++.++.++|+.+....+|+.++..+......  
T Consensus       365 ~~~~~~~~~~-~~~s~~~~i~~~~l~g~Ge~~~~~~g~-~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~  442 (489)
T PRK10207        365 AAGMWFADAQ-GLTSPWFIVLVYLFQSLGELFISALGL-AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPD  442 (489)
T ss_pred             HHHHhhcCCC-CccCHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            2111111111 122345556666667777666555544 777788999999999999999999999999887764421  


Q ss_pred             --------HhchhhHHHHHHHHHHHHHHHhheec
Q psy16658        274 --------NLGSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       274 --------~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                              ...+.+.|...+....++.++.+...
T Consensus       443 ~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~  476 (489)
T PRK10207        443 NITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV  476 (489)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    11234556666666655555554433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.78  E-value=5.8e-18  Score=143.58  Aligned_cols=266  Identities=16%  Similarity=0.155  Sum_probs=204.4

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      ++-|+......+++|.+.+.       ++++..|.+++..+++.++.+.+++.|++.+|+|+|+-++.+..++++++.+.
T Consensus        23 fl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF   95 (422)
T COG0738          23 FLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF   95 (422)
T ss_pred             HHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34566677778889999888       99999999999999999999999999999999999999999999999999988


Q ss_pred             H---HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH---------------
Q psy16658         85 L---FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI---------------  140 (318)
Q Consensus        85 ~---~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~---------------  140 (318)
                      .   ...+|..++.+-++.|.|.+...++.++++....|+++..+.+.      +++....|.+.               
T Consensus        96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~  175 (422)
T COG0738          96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA  175 (422)
T ss_pred             hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence            5   55789999999999999999999999999999999965554444      33444444333               


Q ss_pred             ------------------------------------HHHhh-------cc---------cc-------------------
Q psy16658        141 ------------------------------------GEIAE-------SS---------IR-------------------  149 (318)
Q Consensus       141 ------------------------------------~~~~~-------~~---------~~-------------------  149 (318)
                                                          ++.++       ++         ++                   
T Consensus       176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~  255 (422)
T COG0738         176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAI  255 (422)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHH
Confidence                                                00000       00         00                   


Q ss_pred             -------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCccc
Q psy16658        150 -------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI  210 (318)
Q Consensus       150 -------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (318)
                                         .........+.++|++++.++.+|+...|.+....++..+.++...+.            .
T Consensus       256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------------~  323 (422)
T COG0738         256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------------G  323 (422)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------------c
Confidence                               377788889999999999999999999999988776665555555542            1


Q ss_pred             chhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q psy16658        211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFV  290 (318)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  290 (318)
                      ..+.+....+.+.+.+..++.+. +...+..| + ..+..|....+..+|+++-|++.|++.|+.|....+...-..|.+
T Consensus       324 g~v~~~~l~~ig~F~simfPTIf-slal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l  400 (422)
T COG0738         324 GVVALYALFLIGLFNSIMFPTIF-SLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL  400 (422)
T ss_pred             ChHHHHHHHHHHHHhHHHHHHHH-HHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            23445566666666666665555 77777777 3 355666677788899999999999999999876666655555555


Q ss_pred             HH
Q psy16658        291 GT  292 (318)
Q Consensus       291 ~~  292 (318)
                      ..
T Consensus       401 yV  402 (422)
T COG0738         401 YV  402 (422)
T ss_pred             HH
Confidence            44

>KOG2504|consensus

Probab=99.76  E-value=6.8e-18  Score=152.71  Aligned_cols=253  Identities=19%  Similarity=0.253  Sum_probs=190.8

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhhccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAAR-FIAGVATGGLSAI  110 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r-~l~G~~~g~~~~~  110 (318)
                      ++.+.++++|+.++......+..|+.+.+.||+|.|++.+.+.++..++.++.++++++|++++.. ++.|+|.|..+..
T Consensus        76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p  155 (509)
T KOG2504|consen   76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP  155 (509)
T ss_pred             hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence            899999999999999999999999999999999999999999999999999999999999988865 8999999999999


Q ss_pred             cchhhhhccCchhhhHHHH------hhhHhHHhHHH------------------------------HH------------
Q psy16658        111 IPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------------------GE------------  142 (318)
Q Consensus       111 ~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------------------~~------------  142 (318)
                      ...++..+++ |+|+.+.+      +++..+.|.+.                              ++            
T Consensus       156 aiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~  234 (509)
T KOG2504|consen  156 AVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKD  234 (509)
T ss_pred             hhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhh
Confidence            9999998876 55888887      22222222222                              00            


Q ss_pred             ----------------Hhh------ccc----------------c-----------------------------------
Q psy16658        143 ----------------IAE------SSI----------------R-----------------------------------  149 (318)
Q Consensus       143 ----------------~~~------~~~----------------~-----------------------------------  149 (318)
                                      .+.      ..+                +                                   
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~  314 (509)
T KOG2504|consen  235 LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGF  314 (509)
T ss_pred             hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHH
Confidence                            000      000                0                                   


Q ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHHHhhccCCee--hhhhhhHHHHHHHHHHHHhhhhccCCCC
Q psy16658        150 ---------------------GISAIIVGIVQFIMTALSVVLVDKAGRRI--LLLLSDFVMALCLGVLGFYFYMMEDGKD  206 (318)
Q Consensus       150 ---------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (318)
                                           .....+.++..++++++.|+++|+...++  ...++.+..+++...+...         
T Consensus       315 ~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---------  385 (509)
T KOG2504|consen  315 NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA---------  385 (509)
T ss_pred             HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh---------
Confidence                                 38888999999999999999999988443  3344444444444333331         


Q ss_pred             CcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHH
Q psy16658        207 VSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFS  285 (318)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~  285 (318)
                        ...+.......+++...+. +.......+.|+.+.++-..+.|+...+..++..++|++.|.+.|..| |...|+..+
T Consensus       386 --~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g  462 (509)
T KOG2504|consen  386 --TTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG  462 (509)
T ss_pred             --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence              2233444444455544444 333333567899999999999999999999999999999999999988 877887777


Q ss_pred             HHHHHHHHHhhe
Q psy16658        286 VICFVGTLFTFV  297 (318)
Q Consensus       286 ~~~~~~~~~~~~  297 (318)
                      ....++....++
T Consensus       463 ~~~~~s~~~~~~  474 (509)
T KOG2504|consen  463 LCFLLSAVLLLI  474 (509)
T ss_pred             hHHHHHHHHHHH
Confidence            766666544433

>KOG2615|consensus

Probab=99.75  E-value=9.2e-18  Score=140.84  Aligned_cols=97  Identities=26%  Similarity=0.427  Sum_probs=89.1

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      .+.+..-.|.+.+.+.+...++++.+|.++||+|||.++.+|....++...+.+.++|+..+++.|++.|+..| .....
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~  141 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI  141 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence            34566677999999999999999999999999999999999999999999999999999777788999999866 56788


Q ss_pred             chhhhhccCchhhhHHHH
Q psy16658        112 PMFIGEIAESSIRAGVAT  129 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~  129 (318)
                      .++++|.+++|+|+++++
T Consensus       142 rAiisdV~sek~r~l~ms  159 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMS  159 (451)
T ss_pred             HHHHHhhcChhhccceee
Confidence            899999999999999888

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=1e-16  Score=141.53  Aligned_cols=278  Identities=16%  Similarity=0.186  Sum_probs=196.7

Q ss_pred             ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-chhHHHHHHHHHHHHHHHHH
Q psy16658          7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-RKPVILAFCIPFIISWVLIL   85 (318)
Q Consensus         7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~   85 (318)
                      .-...|...|.+|.+.++       .|.|..|+|.+.+...+...++++++|.++||.+ +||.+.++.++.++......
T Consensus        14 ~f~~~G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen   14 YFFAYGAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888888888       8999999999999999999999999999999986 57788888888888777777


Q ss_pred             HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhh----HHHHhhhHhHH-------------------------
Q psy16658         86 FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA----GVATGGLSAII-------------------------  136 (318)
Q Consensus        86 ~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~----~~~~~~~~~~~-------------------------  136 (318)
                      ..++++.++...++..+......|...++..+...++++.    |..|.++..+.                         
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~  166 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA  166 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence            8889998888888888888888888888888887643321    22220000000                         


Q ss_pred             ---------hHHHHHHh----hc-c--------------cc--------------------------------------h
Q psy16658        137 ---------PMFIGEIA----ES-S--------------IR--------------------------------------G  150 (318)
Q Consensus       137 ---------p~~~~~~~----~~-~--------------~~--------------------------------------g  150 (318)
                               ...+++..    ++ +              ++                                      |
T Consensus       167 ~~~~ll~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g  246 (400)
T PF03825_consen  167 ILSLLLAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIG  246 (400)
T ss_pred             HHHHHHHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence                     00001100    00 0              00                                      3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH----HHHHHHHHH
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS----VIFFIVMFS  226 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  226 (318)
                      ....+..+..++.-...+++.+|+|.|+.+.++....++=..+....          +.+.+.....    ..+.+..++
T Consensus       247 ~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~----------~~~~~~~~~~~~l~q~lhG~tf~  316 (400)
T PF03825_consen  247 ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF----------SDPWPFIVALQLLGQLLHGLTFG  316 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHhhhhHHHH
Confidence            45556667888888899999999999999999887777776666552          1112222222    234666666


Q ss_pred             hcccccceeeeccccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHHHHhheec
Q psy16658        227 LGYGPIPWMMVGELFAPEVKGSATGIAVALN-WISAFIVTLCFVFLVKNLGSAA------TFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       227 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~  299 (318)
                      ..+.... .++.+..|++.|+++.++++... .+|..+|..+.|++.|+.|.+.      .+.+.+++..+..++.+++.
T Consensus       317 ~~~~a~~-~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f  395 (400)
T PF03825_consen  317 LFHAASV-RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF  395 (400)
T ss_pred             HHHHHHH-HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6555555 88889999999999999998875 6899999999999999987553      33444444455555555555


Q ss_pred             cCC
Q psy16658        300 PET  302 (318)
Q Consensus       300 ~~~  302 (318)
                      ||+
T Consensus       396 k~~  398 (400)
T PF03825_consen  396 KPK  398 (400)
T ss_pred             cCC
Confidence            544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.75  E-value=2.9e-17  Score=144.20  Aligned_cols=240  Identities=13%  Similarity=0.105  Sum_probs=160.1

Q ss_pred             ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchhH-HHHHHHHHHHHHH
Q psy16658          9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-----GRKPV-ILAFCIPFIISWV   82 (318)
Q Consensus         9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~   82 (318)
                      +-.+...+.+|.+.+|       +|+|.+++|+.... .+...+ .+++|++.||+     ||||. ++.+..+.++...
T Consensus         2 ~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~   72 (356)
T TIGR00901         2 LPLGLVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL   72 (356)
T ss_pred             CCchhHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence            3456677888999888       99999999999655 555555 99999999998     89996 5677777777777


Q ss_pred             HHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhH---hHHh-----
Q psy16658         83 LILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLS---AIIP-----  137 (318)
Q Consensus        83 ~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~---~~~p-----  137 (318)
                      ..++.   .+.+.+....++.+++.+...++..+++.|++|+|+|+++.+              .+..   ....     
T Consensus        73 ~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        73 ILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            77776   466677777888899888889999999999999999998877              0000   0000     


Q ss_pred             -------H--------------H--HHHHhh------c-------------ccc--------------------------
Q psy16658        138 -------M--------------F--IGEIAE------S-------------SIR--------------------------  149 (318)
Q Consensus       138 -------~--------------~--~~~~~~------~-------------~~~--------------------------  149 (318)
                             .              .  .+|.++      +             +++                          
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT  232 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   0              0  011100      0             000                          


Q ss_pred             --------------hHHHHHHH-HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658        150 --------------GISAIIVG-IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP  214 (318)
Q Consensus       150 --------------g~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (318)
                                    |......+ +..+++.++.+++.||+|+|+.+..+.++..+....+.+...............+..
T Consensus       233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (356)
T TIGR00901       233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML  312 (356)
T ss_pred             HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence                          23333333 456788999999999999999988777776665554433211100000000112333


Q ss_pred             HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHH
Q psy16658        215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNW  258 (318)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  258 (318)
                      .....+.+.+.+....... +++.|..|+++||+..|+.+...+
T Consensus       313 ~~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       313 FLTITLEAVTGGLGTVAFV-AFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhHHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHh
Confidence            3344444555555444444 888999999999999999887654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.72  E-value=2.6e-16  Score=143.80  Aligned_cols=105  Identities=14%  Similarity=0.127  Sum_probs=87.0

Q ss_pred             ccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHh-hH
Q psy16658         13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAK-NV   90 (318)
Q Consensus        13 ~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-s~   90 (318)
                      ...+.+|.+..+.      +|+++++.+++.+.+........+++|+++|| +|||+++..+..+..++..++++++ +.
T Consensus        39 ~~~~~l~~yl~~~------lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~  112 (500)
T PRK09584         39 GLQGIMAVYLVKQ------LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDA  112 (500)
T ss_pred             HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccH
Confidence            3444555555332      89999999998888776666667899999999 5999999999999999999998874 56


Q ss_pred             HHHHHHHHHHHhhccccccccchhhhhccCchh
Q psy16658         91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSI  123 (318)
Q Consensus        91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~  123 (318)
                      +.+.+.|+++|++.|...+...+++.|++|+++
T Consensus       113 ~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~  145 (500)
T PRK09584        113 GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD  145 (500)
T ss_pred             HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence            677788999999999999999999999998654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.69  E-value=1.3e-15  Score=135.33  Aligned_cols=276  Identities=11%  Similarity=-0.002  Sum_probs=169.5

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHH--HHHHHHHHhhhhhhhh-hhhhhhcchhHHHHHHHHH-HHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLI--GSLIAIGAIFGALPAG-SIADKFGRKPVILAFCIPF-IIS   80 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~-~~~   80 (318)
                      +..|+..+...|.+|.+.+|       .|.+.+++|++  .+...+...+..|+++ +..||+||||.+++...+. ...
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            44567777888999999999       89999999997  4677888888888885 4799999999875555332 212


Q ss_pred             HHHHH---HHhh-HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhh------------------
Q psy16658         81 WVLIL---FAKN-VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGL------------------  132 (318)
Q Consensus        81 ~~~~~---~~~s-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~------------------  132 (318)
                      .....   ..++ ...++...++.++..+...+...++..|..++|+++...+      .++                  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~  163 (390)
T TIGR02718        84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR  163 (390)
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            22222   1222 3334445556667777777888888999998888876443      000                  


Q ss_pred             -----------HhHHhH-HH-HHHh-h-c--c-----------cc-----------------------------------
Q psy16658        133 -----------SAIIPM-FI-GEIA-E-S--S-----------IR-----------------------------------  149 (318)
Q Consensus       133 -----------~~~~p~-~~-~~~~-~-~--~-----------~~-----------------------------------  149 (318)
                                 ....+. .. ++.+ + +  +           ++                                   
T Consensus       164 ~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~  243 (390)
T TIGR02718       164 PAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLE  243 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHH
Confidence                       001110 00 1100 0 0  0           01                                   


Q ss_pred             --hHHHHHHH-HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658        150 --GISAIIVG-IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS  226 (318)
Q Consensus       150 --g~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (318)
                        |......+ ...+++.++.|++.||+++|+.+..+....++.............     ....+.......+.....+
T Consensus       244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g  318 (390)
T TIGR02718       244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL-----APGIAVAWSCSAFGSLITG  318 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc-----CCcHHHHHHHHHHHHHHHH
Confidence              34444444 355667889999999999999888776554333222221111000     0111111222222222233


Q ss_pred             hcccccceeeeccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658        227 LGYGPIPWMMVGELFAP-EVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL  293 (318)
Q Consensus       227 ~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  293 (318)
                      ....... ....+..++ +.+++.++..+...++|..++|.+.|.+.|+.|++..|...+.+.+++.+
T Consensus       319 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       319 ITSVAIY-TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHH-HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            3333333 343344554 78999999999999999999999999999999998888777666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=99.69  E-value=2.4e-15  Score=135.95  Aligned_cols=236  Identities=13%  Similarity=0.141  Sum_probs=155.2

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchhH-HHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKPV-ILAFCIPFIISWVLILFAKN------VLMLFAARFIA  100 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~  100 (318)
                      +|++..++|.+.++..+...+..|+.|+++||    +||||. ++.+....++...+....++      ...+++..++.
T Consensus        40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~  119 (444)
T PRK09669         40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL  119 (444)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999998    787654 55677777777665554443      45566666677


Q ss_pred             Hhhccccccccchhhhhcc-CchhhhHHHH------hhhHh-----HHhHHH----------------------------
Q psy16658        101 GVATGGLSAIIPMFIGEIA-ESSIRAGVAT------GGLSA-----IIPMFI----------------------------  140 (318)
Q Consensus       101 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~------~~~~~-----~~p~~~----------------------------  140 (318)
                      +.+.........++.+|+. +++||++..+      .++..     ..|...                            
T Consensus       120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            7776777777789999998 5677886544      00000     001000                            


Q ss_pred             -----HHH---hhc-------------ccc-------------------------------------hHHHHHHHHHHHH
Q psy16658        141 -----GEI---AES-------------SIR-------------------------------------GISAIIVGIVQFI  162 (318)
Q Consensus       141 -----~~~---~~~-------------~~~-------------------------------------g~~~~~~~~~~~~  162 (318)
                           +|.   +++             +|+                                     +.......+..++
T Consensus       200 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii  279 (444)
T PRK09669        200 CFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLF  279 (444)
T ss_pred             HhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHH
Confidence                 111   000             011                                     1333344566677


Q ss_pred             HHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc
Q psy16658        163 MTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA  242 (318)
Q Consensus       163 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  242 (318)
                      +.++.+++.||+|+|+.+..+.....+....+...  .       ....+.......+.+.+.+. ..+..+++++|..+
T Consensus       280 ~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d  349 (444)
T PRK09669        280 GALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--P-------PSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVD  349 (444)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--C-------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Confidence            88889999999999998887765544333222221  0       12233334444455555544 33555577777765


Q ss_pred             -------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        243 -------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       243 -------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                             ++..|...|..+....+|..+++.+.|.+.+..|+
T Consensus       350 ~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        350 YEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             hhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                   23346678899999999999999999999998776

>KOG4686|consensus

Probab=99.68  E-value=2.5e-16  Score=127.25  Aligned_cols=255  Identities=17%  Similarity=0.210  Sum_probs=171.8

Q ss_pred             ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhc
Q psy16658         29 VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLIL---FAKNVLMLFAARFIAGVAT  104 (318)
Q Consensus        29 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~  104 (318)
                      +.|.+++.++..++.+.|.....+-+.+.|++.|| +|-|..-++-+....++.+..+   ..+++|.+.++|++.|+|.
T Consensus        71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg  150 (459)
T KOG4686|consen   71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG  150 (459)
T ss_pred             hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence            45588999999999999999999999999999996 5777654444444455555554   4689999999999999998


Q ss_pred             cccccccchhhhhccCchhhhHHHH-----------------------------hhhHhHHhHHH---------------
Q psy16658        105 GGLSAIIPMFIGEIAESSIRAGVAT-----------------------------GGLSAIIPMFI---------------  140 (318)
Q Consensus       105 g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------~~~~~~~p~~~---------------  140 (318)
                      .....+..++...|+..||.+.+++                             +.+-..+...+               
T Consensus       151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical  230 (459)
T KOG4686|consen  151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL  230 (459)
T ss_pred             hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999998888                             00000000000               


Q ss_pred             -----HHHhh-----cccc-----------------------------------------------------hHHHHHHH
Q psy16658        141 -----GEIAE-----SSIR-----------------------------------------------------GISAIIVG  157 (318)
Q Consensus       141 -----~~~~~-----~~~~-----------------------------------------------------g~~~~~~~  157 (318)
                           ++..+     +++.                                                     |.+.....
T Consensus       231 ~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy  310 (459)
T KOG4686|consen  231 SLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVY  310 (459)
T ss_pred             HhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhh
Confidence                 11000     1100                                                     35555666


Q ss_pred             HHHHHHHHHHHHHhhccCCeehhhhhhHH-HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceee
Q psy16658        158 IVQFIMTALSVVLVDKAGRRILLLLSDFV-MALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMM  236 (318)
Q Consensus       158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (318)
                      ....+.+++.|.++||.|++-..+.+..+ ...+-..+.+.          ..++   ...+.+.+..+..... ..|..
T Consensus       311 ~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----------~lsP---y~~m~~lGLsysllAc-slWP~  376 (459)
T KOG4686|consen  311 GISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----------FLSP---YTSMTFLGLSYSLLAC-SLWPC  376 (459)
T ss_pred             hhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----------hccH---HHHHHHHhhhHHHHHH-HHhhh
Confidence            66777888999999999999776655333 33333333332          1223   3444444444433211 12244


Q ss_pred             eccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-h---hhHHHHHHHHHHHHHHHhhe
Q psy16658        237 VGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-S---AATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       237 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~---~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ++.+.|+++.|++.|..+.+.++|-.+.|.+.|.+.|+.| +   +..|.+....++....+.+.
T Consensus       377 va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  377 VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            4677899999999999999999999999999999999766 2   22334444444444444443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.68  E-value=4.5e-15  Score=135.05  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML   93 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l   93 (318)
                      ...++|.+..|       +|-+ ....|+.+.+.++..++.++.|+++|.+|||+.++.+.++..+|++.++.++|...+
T Consensus        63 ~a~~l~~I~~d-------iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~  134 (599)
T PF06609_consen   63 PASILPYINAD-------IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF  134 (599)
T ss_pred             cHHHHHHHHHh-------cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence            34556777777       6654 677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658         94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      +.+..+.|+|.|... .....++|..|.|.|.....
T Consensus       135 iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~  169 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLA  169 (599)
T ss_pred             HHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhH
Confidence            999999999977665 45566899999999986666

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.67  E-value=4e-15  Score=135.43  Aligned_cols=257  Identities=14%  Similarity=0.120  Sum_probs=170.0

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchh-HHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKP-VILAFCIPFIISWV   82 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~~~~~   82 (318)
                      ++..+...+.++.+..+.      +|++..++|.+..+..+..++..|++|+++|    |+|||| .++++....+++..
T Consensus        19 ~~~~~~~~~~l~~yyt~v------~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDV------VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             hHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            344445555566666654      8999999999999999999999999999999    669955 56667777777765


Q ss_pred             HHHHHh------hHHHHHHHHHHHHhhccccccccchhhhhcc-CchhhhHHHH------h---hhH-h-HHhHH-----
Q psy16658         83 LILFAK------NVLMLFAARFIAGVATGGLSAIIPMFIGEIA-ESSIRAGVAT------G---GLS-A-IIPMF-----  139 (318)
Q Consensus        83 ~~~~~~------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~------~---~~~-~-~~p~~-----  139 (318)
                      +.-..+      .+..+++..++.+++.........++..|.. +++||.+..+      .   ... . ..|.+     
T Consensus        93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~  172 (473)
T PRK10429         93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG  172 (473)
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            554322      2345566667778888888888899999999 6888987665      0   110 1 11110     


Q ss_pred             ---------H-------------------HHH---h-----h-c------------ccc---------------------
Q psy16658        140 ---------I-------------------GEI---A-----E-S------------SIR---------------------  149 (318)
Q Consensus       140 ---------~-------------------~~~---~-----~-~------------~~~---------------------  149 (318)
                               .                   +|.   +     + +            +||                     
T Consensus       173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~  252 (473)
T PRK10429        173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIING  252 (473)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                     0                   221   0     0 0            011                     


Q ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658        150 ----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL  213 (318)
Q Consensus       150 ----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (318)
                                      +.......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.......      ....+.
T Consensus       253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  326 (473)
T PRK10429        253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA------PHNALL  326 (473)
T ss_pred             heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC------chhHHH
Confidence                            2445555677888999999999999999998877766555544433221111      112233


Q ss_pred             HHHHHHHHHHHHHhcccccceeeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        214 PLLSVIFFIVMFSLGYGPIPWMMVGELFA-------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                      ..+...+.+.+.+... ...+++++|..+       .+..|...|..+....++..+++.+.|.+.+..|+
T Consensus       327 ~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        327 IVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3334444444444433 334467777754       33346688999999999999999999999987765

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.67  E-value=6.8e-15  Score=129.20  Aligned_cols=132  Identities=17%  Similarity=0.217  Sum_probs=117.4

Q ss_pred             ccccccccccccccCcCCCCCh-hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16658         17 VLPILTSTTETSVLNEPVDRGQ-ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFA   95 (318)
Q Consensus        17 ~lp~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~   95 (318)
                      ..|.+.+|       +|+|++| .|.+.+.++.++.+..++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus        48 a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        48 ITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             HHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555       9999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658         96 ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG  175 (318)
Q Consensus        96 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g  175 (318)
                      .|++.|++.|... +...++.+|+|+++|+++.+                     .......++.+++.++.++ ...+|
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~rats---------------------i~~sg~~vG~~Ia~~L~ql-l~s~g  177 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAA---------------------YSRAAVLLGVFLSSVLGQL-LVTLG  177 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH-HHhcC
Confidence            9999999999999 99999999999999999999                     6666677777777777777 34455


Q ss_pred             Cee
Q psy16658        176 RRI  178 (318)
Q Consensus       176 ~~~  178 (318)
                      .|.
T Consensus       178 Wr~  180 (511)
T TIGR00806       178 WIS  180 (511)
T ss_pred             chh
Confidence            543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2533|consensus

Probab=99.66  E-value=1.6e-15  Score=136.10  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=96.6

Q ss_pred             ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q psy16658         29 VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        29 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~  108 (318)
                      ++|.+....+.+.+.+++.++++++.++++.+.||++..+.+....+++++-.++.....|++.+++.|++.|+.++..+
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w  152 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW  152 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence            34488999999999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             cccchhhhhccCchhhhHHHH
Q psy16658        109 AIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus       109 ~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      |....+++.|+.++||+..++
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~  173 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMG  173 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHH
Confidence            999999999999999999998

>PRK09848 glucuronide transporter; Provisional

Probab=99.66  E-value=4.9e-15  Score=134.10  Aligned_cols=251  Identities=13%  Similarity=0.098  Sum_probs=158.9

Q ss_pred             ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh----cchhHH-HHHHHHHHHHHHHHH
Q psy16658         11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF----GRKPVI-LAFCIPFIISWVLIL   85 (318)
Q Consensus        11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~   85 (318)
                      .+...+.++.+..+.      .|++..++|.+.+...+...+..++.|+++||.    ||||.. .++.+...+...+..
T Consensus        24 ~~~~~~~l~~y~~~~------~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~   97 (448)
T PRK09848         24 FAMGALFLLSYYTDV------AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF   97 (448)
T ss_pred             HHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH
Confidence            333444454454443      799999999999999999999999999999996    777754 555554444444332


Q ss_pred             HHh-------hHHHHHHHHHHHHhhccccccccchhhhhccCc-hhhhHHHH-----------hhhHhHHhHHH------
Q psy16658         86 FAK-------NVLMLFAARFIAGVATGGLSAIIPMFIGEIAES-SIRAGVAT-----------GGLSAIIPMFI------  140 (318)
Q Consensus        86 ~~~-------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~-----------~~~~~~~p~~~------  140 (318)
                      ..+       ....++....+.+++.+...+...++..|..++ ++|.+..+           .+.....|.+.      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~  177 (448)
T PRK09848         98 WVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEE  177 (448)
T ss_pred             hCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            111       223344555677888888888777877776654 56776543           01111111110      


Q ss_pred             ---------------------------HHHhh---c------------ccc-----------------------------
Q psy16658        141 ---------------------------GEIAE---S------------SIR-----------------------------  149 (318)
Q Consensus       141 ---------------------------~~~~~---~------------~~~-----------------------------  149 (318)
                                                 +|..+   +            +||                             
T Consensus       178 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (448)
T PRK09848        178 MVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRY  257 (448)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEee
Confidence                                       11100   0            011                             


Q ss_pred             --------h-HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658        150 --------G-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF  220 (318)
Q Consensus       150 --------g-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (318)
                              + +......+..+++.++.+++.||+++|+.+..+..+..++.+.+.+.         +....+.......+
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l  328 (448)
T PRK09848        258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---------SVWSLPVALVALAI  328 (448)
T ss_pred             ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---------CchhHHHHHHHHHH
Confidence                    1 22222345567788899999999999999998887777766555431         01123333344444


Q ss_pred             HHHHHHhcccccceeeeccccchh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        221 FIVMFSLGYGPIPWMMVGELFAPE-------VKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                      .+.+.+.... ..++...|..|.+       .+|...|+.+....+|..+++.+.+.+.+..|+
T Consensus       329 ~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        329 ASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5555444443 3336666776543       358999999999999999999999999887665

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.65  E-value=9.8e-15  Score=122.40  Aligned_cols=265  Identities=14%  Similarity=0.174  Sum_probs=191.6

Q ss_pred             ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658         11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV   90 (318)
Q Consensus        11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~   90 (318)
                      .....|+++.+.+|       +|+|.+..|+++++..+...+.+++..+++.|+|.+|.+..++++..++.++-... +.
T Consensus        28 itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~   99 (395)
T COG2807          28 ITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL   99 (395)
T ss_pred             hhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence            44567788888888       99999999999999999999999999999999999999999999999999998887 77


Q ss_pred             HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------------hhhHhHHhHHH-
Q psy16658         91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------------------GGLSAIIPMFI-  140 (318)
Q Consensus        91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------~~~~~~~p~~~-  140 (318)
                      +.++.+-.+.|.+.+......++.+-+.+|+| -+..++                             .+....+|.++ 
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA  178 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA  178 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999976 444444                             11111122211 


Q ss_pred             -----HH-Hhh-----ccc----c-------------------------------------------hHHHHHHHHHHHH
Q psy16658        141 -----GE-IAE-----SSI----R-------------------------------------------GISAIIVGIVQFI  162 (318)
Q Consensus       141 -----~~-~~~-----~~~----~-------------------------------------------g~~~~~~~~~~~~  162 (318)
                           ++ .++     +.+    +                                           |....+..+.+.+
T Consensus       179 l~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~  258 (395)
T COG2807         179 LLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLP  258 (395)
T ss_pred             HHHHhhhcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHH
Confidence                 11 111     000    0                                           6888899999999


Q ss_pred             HHHHHHHHhhcc-CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccc-
Q psy16658        163 MTALSVVLVDKA-GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGEL-  240 (318)
Q Consensus       163 ~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (318)
                      .++....+++|. ++|+.......++.++.+.+.+..         .+..+.   .+.+.+.+.+..++-.. ..+.+. 
T Consensus       259 ~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P---------~~~~~l---w~~llG~G~G~~F~laL-~li~~rs  325 (395)
T COG2807         259 TALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP---------GQLPIL---WALLLGLGQGGAFPLAL-TLILLRS  325 (395)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh---------hhHHHH---HHHHHhCccchHHHHHH-HHHHhhc
Confidence            999999999974 466666666666677776665431         111111   13444444443333322 333333 


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhhe
Q psy16658        241 FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       241 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      -.+++.++-.|+.+.++++-...||++.|.+.|..| |......++...+...+..+.
T Consensus       326 ~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         326 SDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             CChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            346666888999999999999999999999999987 655555555555544444433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.63  E-value=4.6e-14  Score=127.15  Aligned_cols=256  Identities=18%  Similarity=0.205  Sum_probs=173.5

Q ss_pred             ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhH-HHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHhhccccccccch
Q psy16658         37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPV-ILAFCIPFIISWVLILFA-K-NVLMLFAARFIAGVATGGLSAIIPM  113 (318)
Q Consensus        37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~-~-s~~~l~~~r~l~G~~~g~~~~~~~~  113 (318)
                      +..++..++..+...+..|+.|.++|+-|+||. +.+...+..+.+.+..+. + +++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999997774 555666666777777774 3 4555555566666777888888999


Q ss_pred             hhhhccCchhh--------------------------hHHHH-----hhhH-----------------------------
Q psy16658        114 FIGEIAESSIR--------------------------AGVAT-----GGLS-----------------------------  133 (318)
Q Consensus       114 ~i~~~~~~~~r--------------------------~~~~~-----~~~~-----------------------------  133 (318)
                      ++.|..+++++                          ++..+     +.+.                             
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999988                          77766     0000                             


Q ss_pred             ---------hHHhHHH--HHHhh-cc------------------------cc----------------------------
Q psy16658        134 ---------AIIPMFI--GEIAE-SS------------------------IR----------------------------  149 (318)
Q Consensus       134 ---------~~~p~~~--~~~~~-~~------------------------~~----------------------------  149 (318)
                               ..+|.+.  +|..+ +.                        .|                            
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~  309 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT  309 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1111111  11100 00                        00                            


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhccCCe--ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658        150 ----------GISAIIVGIVQFIMTALSVVLVDKAGRR--ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS  217 (318)
Q Consensus       150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
                                .....+..+.+++|+++.+++.||+|.|  +++..+.....+..+.- .........  .....+...+.
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g-~~G~~~~~~--g~~~~~~f~~~  386 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYG-LFGFWPSFF--GLKSPWEFWVL  386 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-HHHhhhccc--CcccHHHHHHH
Confidence                      2666778899999999999999999988  67666554442222211 111111100  11234444555


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhh
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ..+.+...+. ..+..-++.+|+.|+++.+...|++...+.....+||.+.|.+.+..| .+..+....++.+++.++..
T Consensus       387 a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  387 AVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            5555555444 344555888999999999999999999999999999999999999987 77777777777666655553

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.63  E-value=1.4e-15  Score=132.47  Aligned_cols=278  Identities=18%  Similarity=0.212  Sum_probs=178.2

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH--HHHHHH-HHH
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF--IISWVL-ILF   86 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~~~-~~~   86 (318)
                      ..+...|..|...++.      .|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+.  ..+... ..+
T Consensus        22 ~~gi~~pF~~iWL~~~------~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~   95 (412)
T PF01306_consen   22 IWGIFLPFFPIWLTQV------AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVF   95 (412)
T ss_dssp             HHHHHHHHHHHHHHHH------H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred             HHHHHHHHHHHHHccc------cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666543      7999999999999999999999999999999999777554433222  122222 222


Q ss_pred             Hh----hH-HHHHHHHHHHHhhccccccccchhhhhccCchh----hhHHHHhhhHhHH-----------hH--------
Q psy16658         87 AK----NV-LMLFAARFIAGVATGGLSAIIPMFIGEIAESSI----RAGVATGGLSAII-----------PM--------  138 (318)
Q Consensus        87 ~~----s~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----r~~~~~~~~~~~~-----------p~--------  138 (318)
                      .|    |. ...+++-+..|+......|+..+++.++..+++    |.|.-|.++.++.           |.        
T Consensus        96 ~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~  175 (412)
T PF01306_consen   96 GPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASA  175 (412)
T ss_dssp             HHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHH
Confidence            22    22 122222233344444444555444444432221    2233331111100           00        


Q ss_pred             -------HH---H-HHh------h----cc-------------cc-----------------------------------
Q psy16658        139 -------FI---G-EIA------E----SS-------------IR-----------------------------------  149 (318)
Q Consensus       139 -------~~---~-~~~------~----~~-------------~~-----------------------------------  149 (318)
                             ++   + +..      +    ++             +|                                   
T Consensus       176 ~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~  255 (412)
T PF01306_consen  176 AAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAG  255 (412)
T ss_dssp             HHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred             HHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                   00   1 000      0    00             00                                   


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHH
Q psy16658        150 ------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIV  223 (318)
Q Consensus       150 ------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (318)
                            |....+..+..++...+..++.+|+|.|+.+.++..++.+=..+.++.           .+++.....-.+.+.
T Consensus       256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-----------~~~~~i~~~klLH~~  324 (412)
T PF01306_consen  256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-----------TNPWVISLIKLLHAL  324 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------SHHHHHHHHHHHHH
T ss_pred             cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----------cchHHHHHHHHHHHH
Confidence                  577888888899999999999999999999999988888887777763           445666666677777


Q ss_pred             HHHhcccccceeeeccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        224 MFSLGYGPIPWMMVGELFAPEVKGSATGIA-VALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      -+.....+.. -++.+.+|++..++...+. +...+++..+.+.+.|.+.|+.|++.+|++.+.+.+...++..+.++++
T Consensus       325 e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  325 EFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            7666666566 8889999999999998886 5667899999999999999999999999999988888778777777655


Q ss_pred             CCC
Q psy16658        303 KGK  305 (318)
Q Consensus       303 ~~~  305 (318)
                      ++.
T Consensus       404 ~~~  406 (412)
T PF01306_consen  404 KKQ  406 (412)
T ss_dssp             SST
T ss_pred             Ccc
Confidence            543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=8.5e-14  Score=119.29  Aligned_cols=255  Identities=15%  Similarity=0.133  Sum_probs=177.2

Q ss_pred             CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchh-HHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHhhccccccc
Q psy16658         35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKP-VILAFCIPFIISWVLILFAKN--V-LMLFAARFIAGVATGGLSAI  110 (318)
Q Consensus        35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~s--~-~~l~~~r~l~G~~~g~~~~~  110 (318)
                      +.+..+...++..+...+..|+.|.++|+.|+|| .+-....+..++.....++++  + +..++...+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            3455677888899999999999999999999766 556677777777777777765  4 44555678889999999999


Q ss_pred             cchhhhhccCchhhhHHHH-----------------------------------------------------hhhHhHHh
Q psy16658        111 IPMFIGEIAESSIRAGVAT-----------------------------------------------------GGLSAIIP  137 (318)
Q Consensus       111 ~~~~i~~~~~~~~r~~~~~-----------------------------------------------------~~~~~~~p  137 (318)
                      -.+++.+..++++-++..+                                                     -.....+|
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            9999999999988887766                                                     11112223


Q ss_pred             HHH--HHHh----------------------hcccc---------------------------------------hHHHH
Q psy16658        138 MFI--GEIA----------------------ESSIR---------------------------------------GISAI  154 (318)
Q Consensus       138 ~~~--~~~~----------------------~~~~~---------------------------------------g~~~~  154 (318)
                      .+.  +|..                      |..++                                       .....
T Consensus       216 m~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~  295 (438)
T COG2270         216 MILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGI  295 (438)
T ss_pred             HHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence            322  1100                      00000                                       25666


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658        155 IVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW  234 (318)
Q Consensus       155 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (318)
                      ..++..++++++.|++.||+|.|+++..+.++..+.++...+.           ...........+.+...+. .....-
T Consensus       296 ~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-----------~~~~~f~i~gll~g~s~G~-~qA~SR  363 (438)
T COG2270         296 ALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-----------EGELDFWILGLLVGTSLGG-AQASSR  363 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-----------cccHHHHHHHHHHHHhcch-HHHHHH
Confidence            6788899999999999999999999988877766666555442           1111222232333333333 334455


Q ss_pred             eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ++..++.|+++-++..|+++..+......+|++.+.+.+..| .+..+.....+..++.+ .+...|..
T Consensus       364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~  431 (438)
T COG2270         364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVP  431 (438)
T ss_pred             HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCC
Confidence            788899999999999999999999999999999999999876 44444444444444433 33444444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.61  E-value=3.9e-14  Score=126.97  Aligned_cols=287  Identities=19%  Similarity=0.243  Sum_probs=192.9

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchhHHHHH-HHHHHHHHHHH
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKPVILAF-CIPFIISWVLI   84 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~   84 (318)
                      ..+...+.++.+.++       +|.+..+.+++..+..+...+.+|+.|+++|    |+||||.++.. .....++..+.
T Consensus        19 ~~~l~~~~l~~yl~~-------lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll   91 (477)
T TIGR01301        19 GWALQLSLLTPYVQE-------LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI   91 (477)
T ss_pred             HHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            334445666667666       8999999999999999999999999999999    59999987774 66666777777


Q ss_pred             HHHhhHH-----------------HHHHHHHHHHhhccccccccchhhhhccCchhhh--HHHH---------hhhHhHH
Q psy16658         85 LFAKNVL-----------------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA--GVAT---------GGLSAII  136 (318)
Q Consensus        85 ~~~~s~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~---------~~~~~~~  136 (318)
                      ++++++.                 .++++-.+..++.+...+...++++|.+|+++|.  .+.+         .+.....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776643                 2333344555677888888899999999988763  3444         0000000


Q ss_pred             ----------hHH-----------------H----------------HHHh----------h---c-cc---c-------
Q psy16658        137 ----------PMF-----------------I----------------GEIA----------E---S-SI---R-------  149 (318)
Q Consensus       137 ----------p~~-----------------~----------------~~~~----------~---~-~~---~-------  149 (318)
                                |..                 +                +|..          +   + ++   +       
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  251 (477)
T TIGR01301       172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFG  251 (477)
T ss_pred             HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHH
Confidence                      100                 0                2210          0   0 00   0       


Q ss_pred             -------------------------------------------------------h-HHHHHHHHHHHHHHHHHHHHhhc
Q psy16658        150 -------------------------------------------------------G-ISAIIVGIVQFIMTALSVVLVDK  173 (318)
Q Consensus       150 -------------------------------------------------------g-~~~~~~~~~~~~~~~~~g~l~d~  173 (318)
                                                                             | +....+++...+.+++..++.+|
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                   1 44555666666777788889999


Q ss_pred             cCC-eehhhhhhHHHHHHHHHHHHhhhhccCC----------CCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc
Q psy16658        174 AGR-RILLLLSDFVMALCLGVLGFYFYMMEDG----------KDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA  242 (318)
Q Consensus       174 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  242 (318)
                      +|+ |+....+.++.++++....+.....++.          .+.....+..++.....++..+.. ..++++++++..|
T Consensus       332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~  410 (477)
T TIGR01301       332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRSS  410 (477)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHcc
Confidence            985 6666888777777777776543211100          000111245555666666666553 4467788888888


Q ss_pred             h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHhheeccCCCC
Q psy16658        243 P--EVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLFTFVLVPETKG  304 (318)
Q Consensus       243 ~--~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (318)
                      +  +..|..+|+.|.+..+.+.+.....|.+.+..|  ...++.+.++..+++.+..++.+|+.++
T Consensus       411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4  455999999999999999999998888766665  3456666677777778888888887654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=99.61  E-value=2.5e-14  Score=130.94  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=92.4

Q ss_pred             cccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH------hh
Q psy16658         16 PVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA------KN   89 (318)
Q Consensus        16 ~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~s   89 (318)
                      ...|.+.++       +|+|.++.+++.+.. ......+++.|++.||+|||+++.++.+++.+++++++++      ++
T Consensus        48 v~s~~L~~~-------lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         48 LISGAMQAR-------YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHHHH-------hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            344666666       999999999998774 4455678889999999999999999999999999999998      68


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658         90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      ++.+.+.|++.|++.+...+.....+.+|+| ++||++.+
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~G  158 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVA  158 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHH
Confidence            9999999999999999998999999999997 67898888

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.60  E-value=1.3e-13  Score=124.16  Aligned_cols=110  Identities=17%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHh-hHH
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAK-NVL   91 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-s~~   91 (318)
                      ....+|.+..+.      +|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+..+ +..
T Consensus        28 ~~~~L~~yL~~~------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~  101 (493)
T PRK15462         28 MRALLILYLTNQ------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPS  101 (493)
T ss_pred             HHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            445666665542      899999999999999999999999999999999 999999999999999987776543 223


Q ss_pred             HHHHHHHHHHhhccccccccchhhhhccCch--hhhHHHH
Q psy16658         92 MLFAARFIAGVATGGLSAIIPMFIGEIAESS--IRAGVAT  129 (318)
Q Consensus        92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~  129 (318)
                      .+.+...+..++.|...+...++++|.+|++  +|..+.+
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~  141 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFS  141 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceeh
Confidence            3444444555667777788889999999876  5655555

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.59  E-value=1e-14  Score=136.35  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=117.3

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~   87 (318)
                      ....++.++.+|.+.++       ++++..+.|++.+.+.+++.++.++.++++||+||||.+.++.++++++++++++.
T Consensus        46 ~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        46 LLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             HHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            34567788888999888       99999999999999999999999999999999999999999999999999998876


Q ss_pred             h---------------------------------------------------hHHHHHHHHHHHHhhccccccccchhhh
Q psy16658         88 K---------------------------------------------------NVLMLFAARFIAGVATGGLSAIIPMFIG  116 (318)
Q Consensus        88 ~---------------------------------------------------s~~~l~~~r~l~G~~~g~~~~~~~~~i~  116 (318)
                      +                                                   .+..++++|+++|+|.+..++...+++.
T Consensus       119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~  198 (633)
T TIGR00805       119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID  198 (633)
T ss_pred             HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence            3                                                   2566789999999999999999999999


Q ss_pred             hccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q psy16658        117 EIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVD  172 (318)
Q Consensus       117 ~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d  172 (318)
                      |++|+++|++..+                     .......++..++.++++++.+
T Consensus       199 d~~~~~~~~~~~~---------------------i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       199 DFAKSKNSPLYIG---------------------ILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             ccCCccccHHHHH---------------------HHHHHHHhhhHHHHHHHHHHHh
Confidence            9999999999988                     4444455555555555555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.59  E-value=5.7e-14  Score=126.38  Aligned_cols=237  Identities=19%  Similarity=0.220  Sum_probs=177.1

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchhH-HHHHHHHHHHHHHHHHHH-h-------hHHHHHHHHH
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKPV-ILAFCIPFIISWVLILFA-K-------NVLMLFAARF   98 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~-------s~~~l~~~r~   98 (318)
                      .++++...|.+.....+..++..|+.|.++|    |+||||. ++++....+++..+.... |       ....+.+..+
T Consensus        32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~  111 (428)
T PF13347_consen   32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI  111 (428)
T ss_pred             cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence            8999999999999999999999999999999    8998875 556778888877777765 4       2344567777


Q ss_pred             HHHhhccccccccchhhhhccC-chhhhHHHH---------h-hhHhHHhHHH---------------------------
Q psy16658         99 IAGVATGGLSAIIPMFIGEIAE-SSIRAGVAT---------G-GLSAIIPMFI---------------------------  140 (318)
Q Consensus        99 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~---------~-~~~~~~p~~~---------------------------  140 (318)
                      +..++.........++..|..+ +++|.+..+         . +...+.|.+.                           
T Consensus       112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~  191 (428)
T PF13347_consen  112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF  191 (428)
T ss_pred             HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence            7799999999999999999998 467877666         1 1111111111                           


Q ss_pred             -------HHH----hhcc--------------cc-------------------------------------hHHHHHHHH
Q psy16658        141 -------GEI----AESS--------------IR-------------------------------------GISAIIVGI  158 (318)
Q Consensus       141 -------~~~----~~~~--------------~~-------------------------------------g~~~~~~~~  158 (318)
                             +|.    ++++              ||                                     +.......+
T Consensus       192 ~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~  271 (428)
T PF13347_consen  192 LITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFV  271 (428)
T ss_pred             hhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHH
Confidence                   230    0000              11                                     366667788


Q ss_pred             HHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658        159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG  238 (318)
Q Consensus       159 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (318)
                      ..+++.++.++++||+|+|+.+..+..+.+++.+.+.+...         .+.+...+...+.+.+.+... ..++++.+
T Consensus       272 ~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~a  341 (428)
T PF13347_consen  272 ASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---------GSPWLVLILFILAGIGYGAFF-VIPWAMLA  341 (428)
T ss_pred             HHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHhHhhhcccc-cccccccc
Confidence            88999999999999999999999999988888887766421         234555666666666665544 55668888


Q ss_pred             cccch-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q psy16658        239 ELFAP-------EVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA  278 (318)
Q Consensus       239 ~~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  278 (318)
                      |..+.       +..|...|+.+....++..+++.+.+.+.+..|+.
T Consensus       342 d~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  342 DVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             cchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            88763       33588999999999999999999999998876643

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.5e-12  Score=114.83  Aligned_cols=254  Identities=19%  Similarity=0.190  Sum_probs=181.2

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchhH-HHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKPV-ILAFCIPFIISWV   82 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~   82 (318)
                      +...+.....+..+..|.      +|+++..+|.+..+.-+--++.-|+.|.+.||    +||+|. ++++.+..++.+.
T Consensus        25 ~~~~~~~~~yLl~fYTdv------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          25 NFAFGIVVLYLLFFYTDV------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             HHHHHHHHHHHHHHHhcc------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            344444555566666665      99999999999999999999999999999995    788664 6668788888888


Q ss_pred             HHHHHhh------HHHHHHHHHHHHhhccccccccchhhhhccC-chhhhHHHH---------hhhHhHHh-HHH-----
Q psy16658         83 LILFAKN------VLMLFAARFIAGVATGGLSAIIPMFIGEIAE-SSIRAGVAT---------GGLSAIIP-MFI-----  140 (318)
Q Consensus        83 ~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~---------~~~~~~~p-~~~-----  140 (318)
                      ++-.+++      .....+...+.+++.......-.++.+|..+ ++||.+..+         .......+ .+.     
T Consensus        99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~  178 (467)
T COG2211          99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG  178 (467)
T ss_pred             HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8887763      4566677888899999999899999999984 677877666         11111111 111     


Q ss_pred             -----------------------------HHHhh-----c---------------ccc----------------------
Q psy16658        141 -----------------------------GEIAE-----S---------------SIR----------------------  149 (318)
Q Consensus       141 -----------------------------~~~~~-----~---------------~~~----------------------  149 (318)
                                                   +|...     +               +||                      
T Consensus       179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~  258 (467)
T COG2211         179 GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI  258 (467)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh
Confidence                                         11000     0               111                      


Q ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658        150 ----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL  213 (318)
Q Consensus       150 ----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (318)
                                      ...........+++.++..++.+|+|+|+.+.++.++..++.+++.+..         .++.+.
T Consensus       259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~---------~~~~~l  329 (467)
T COG2211         259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP---------AGSVVL  329 (467)
T ss_pred             hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc---------CcchHH
Confidence                            2455555566666688999999999999999999888888888877752         122233


Q ss_pred             HHHHHHHHHHHHHhcccccceeeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        214 PLLSVIFFIVMFSLGYGPIPWMMVGELFA-------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                      .++..++.+.+.+ ..++++|++++|..+       .+.-|...|....+.-+|.+++..+.|++.+..|+
T Consensus       330 ~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         330 IVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3333344444444 456778888888763       23347888999999999999999999999987664

>PRK11462 putative transporter; Provisional

Probab=99.54  E-value=5e-13  Score=121.10  Aligned_cols=236  Identities=14%  Similarity=0.119  Sum_probs=151.0

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchhH-HHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKPV-ILAFCIPFIISWVLILFAKN------VLMLFAARFIA  100 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~  100 (318)
                      .|+++..+|.+..+.-+..++.-|+.|+++||    +||||. ++++....+++..++-..++      ...+.+.-++.
T Consensus        40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~  119 (460)
T PRK11462         40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL  119 (460)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999995    798875 44566777777666554442      34556666777


Q ss_pred             HhhccccccccchhhhhccC-chhhhHHHH------hh---hH-h-HHhHHH----------------------------
Q psy16658        101 GVATGGLSAIIPMFIGEIAE-SSIRAGVAT------GG---LS-A-IIPMFI----------------------------  140 (318)
Q Consensus       101 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~------~~---~~-~-~~p~~~----------------------------  140 (318)
                      .++.......-.++..|..+ ++||.+..+      .+   .. . ..|.+-                            
T Consensus       120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999987 778887777      00   00 0 011100                            


Q ss_pred             -----HHHhh-c--------------ccc-------------------------------------hHHHHHHHHHHHHH
Q psy16658        141 -----GEIAE-S--------------SIR-------------------------------------GISAIIVGIVQFIM  163 (318)
Q Consensus       141 -----~~~~~-~--------------~~~-------------------------------------g~~~~~~~~~~~~~  163 (318)
                           +|..+ +              +||                                     +.......+.++++
T Consensus       200 ~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig  279 (460)
T PRK11462        200 CFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIG  279 (460)
T ss_pred             HHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHH
Confidence                 11110 0              011                                     23445566777888


Q ss_pred             HHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc-
Q psy16658        164 TALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA-  242 (318)
Q Consensus       164 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  242 (318)
                      .++.++++||+++|+....+.....+...++.+.  .       ....+......++.+.+. ....+..+++..|..+ 
T Consensus       280 ~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~  349 (460)
T PRK11462        280 SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--P-------MQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDY  349 (460)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--c-------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhh
Confidence            8999999999999987765444333322222111  0       011112222233333333 2234444456666554 


Q ss_pred             ------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658        243 ------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS  277 (318)
Q Consensus       243 ------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  277 (318)
                            .+..|...+..+....+|..+++.+.|.+.+..|+
T Consensus       350 ~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        350 GEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             hHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                  22235556777788999999999999999887655

>TIGR00788 fbt folate/biopterin transporter

Probab=99.53  E-value=1.5e-13  Score=124.60  Aligned_cols=241  Identities=13%  Similarity=0.097  Sum_probs=167.4

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chhHHHHHHHHHH-HHHHHHHHHhhHH-HHHHHHHHHHhhc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-----RKPVILAFCIPFI-ISWVLILFAKNVL-MLFAARFIAGVAT  104 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~s~~-~l~~~r~l~G~~~  104 (318)
                      +|++.++++...+...+...+-.+ +|.++||++     ||+.++++.++.. +.....+..++.. ...+.+++.+++.
T Consensus        56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  134 (468)
T TIGR00788        56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK  134 (468)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence            899999999999999999999555 999999998     6777777776653 3333333334543 4444789999999


Q ss_pred             cccccccchhhhhccCchhhhHH------------HH--------------------hhhHhH---Hh----HHHHHHh-
Q psy16658        105 GGLSAIIPMFIGEIAESSIRAGV------------AT--------------------GGLSAI---IP----MFIGEIA-  144 (318)
Q Consensus       105 g~~~~~~~~~i~~~~~~~~r~~~------------~~--------------------~~~~~~---~p----~~~~~~~-  144 (318)
                      +...++..++..|..+ |+++..            .|                    ....+.   ++    ...+|.+ 
T Consensus       135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~  213 (468)
T TIGR00788       135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRA  213 (468)
T ss_pred             HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999998 444221            12                    001011   11    1112211 


Q ss_pred             ---hc--c------------------c-----------c--------------------------------------hHH
Q psy16658        145 ---ES--S------------------I-----------R--------------------------------------GIS  152 (318)
Q Consensus       145 ---~~--~------------------~-----------~--------------------------------------g~~  152 (318)
                         ++  +                  +           +                                      |..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~  293 (468)
T TIGR00788       214 FVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMS  293 (468)
T ss_pred             cccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhH
Confidence               00  0                  0           0                                      577


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658        153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI  232 (318)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
                      ....+++.+++....+++.+|++.|+.+..+.++.+++...........+... .....+.......+.....+....+.
T Consensus       294 ~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~-gi~~~~~~~~~~~l~~~~~g~~~~~~  372 (468)
T TIGR00788       294 KVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF-GISDEVFVLGDSIIAEVLAQLKFMPF  372 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc-CCCCeeeeeehhHHHHHHHHHHHccH
Confidence            77788999999999999999999999988887777666544332211111000 00112233445556666667777777


Q ss_pred             ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658        233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG  276 (318)
Q Consensus       233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  276 (318)
                      . .++.+..|++.+++..++.+++.++|..+++.+.+.+.++.|
T Consensus       373 ~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       373 L-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             H-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6 888899999999999999999999999999999999999887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.47  E-value=1.5e-12  Score=115.23  Aligned_cols=142  Identities=13%  Similarity=0.103  Sum_probs=114.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      .|+......++..++.++.|++.||+|||+.+..+.....++..+....           .+.+...+...+.+.+.+..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~   99 (399)
T TIGR00893        31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----------GAYVSLYILRVLLGAAEAPF   99 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------cCHHHHHHHHHHHHHHHHhh
Confidence            3688899999999999999999999999999998888877777766653           23445555556666665554


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ..... .++.|.+|+++|++++++.+....+|..++|.+.+.+.++.+|+..+.+.+....+..+..+...+++
T Consensus       100 ~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893       100 FPGII-LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             hhHHH-HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            44444 78889999999999999999999999999999999999999999999888777776666555555544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.46  E-value=6.4e-13  Score=116.60  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......+...++.++.|+++||+|||+.+..+..+..++..+........      ..+.+...+...+.+.+.+...
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~~~  110 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG------GLNIWQVYVLAGILAIAQAFFT  110 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHHH
Confidence            5788888899999999999999999999999988777776666655432111      1134445555555555555544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ++.. +++.|..|+++|+++.|+.+....+|..++|.+.+.+.++.||+..+++.+...++..+...
T Consensus       111 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       111 PAYQ-AMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHH-HHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444 88899999999999999999999999999999999999999999988877666655544443

>PRK10054 putative transporter; Provisional

Probab=99.45  E-value=1.4e-12  Score=116.16  Aligned_cols=178  Identities=13%  Similarity=0.172  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy16658         89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSV  168 (318)
Q Consensus        89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  168 (318)
                      +.+.+++.+++..++.+...|....++.|...-+.                       .+-|+......+...+.+++.|
T Consensus         8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~-----------------------~~~g~~~s~~~~~~~~~~~~~G   64 (395)
T PRK10054          8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSV-----------------------DLIGYAMTIALTIGVVFSLGFG   64 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666655555543221110                       1114677778888899999999


Q ss_pred             HHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhh
Q psy16658        169 VLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGS  248 (318)
Q Consensus       169 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  248 (318)
                      +++||+|||+.+..+.....++.+.+.+.           ++.+..+....+.+..... ..+....+..|..|+++|++
T Consensus        65 ~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~  132 (395)
T PRK10054         65 ILADKFDKKRYMLLAITAFASGFIAIPLV-----------NNVTLVVLFFALINCAYSV-FSTVLKAWFADNLSSTSKTK  132 (395)
T ss_pred             HHHhhcCcchhHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHhHHHH
Confidence            99999999999988887777766655542           1222333333333333332 33334477789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        249 ATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       249 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      +.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+...++..++..+..+|+
T Consensus       133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998875 6899888887776666554444434443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.44  E-value=2.2e-12  Score=114.23  Aligned_cols=142  Identities=20%  Similarity=0.134  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|++.||+|||+.+..+.....++.......           .+.+.......+.+.+.+...
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~  111 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----------NNIETLLVLRFVQAFGASAGS  111 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHcchhHHH
Confidence            578888899999999999999999999999998887777777666542           223333444444554444444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      .... .++.|.+|+++|+++.+..+....++..++|.+.+.+.++.+|+..+.+.+....+..+..+...||++
T Consensus       112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       112 VISQ-ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4444 778899999999999999999999999999999999999999999988887777766666555555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.42  E-value=3.7e-12  Score=112.91  Aligned_cols=142  Identities=10%  Similarity=0.096  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..+++++.|++.||+|||+.+..+..+.+++.++....           .+.+...+...+.+.+.+...
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----------~~~~~l~~~r~l~G~~~~~~~  109 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----------SSYLMLAIGRLVSGFPHGAFF  109 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhhHHHH
Confidence            477888899999999999999999999999999988888877766652           334445555555555544433


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      .... ....|..|+++|+++++.......++..++|.+.+.+.+..+|++.|.+.+....+..+......||.+
T Consensus       110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        110 GVGA-IVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHH-HHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3333 667788999999999999999999999999999999999999999999888777666555555566643

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.42  E-value=6.7e-13  Score=99.85  Aligned_cols=120  Identities=23%  Similarity=0.319  Sum_probs=107.2

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCch
Q psy16658         43 GSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESS  122 (318)
Q Consensus        43 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  122 (318)
                      .+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658        123 IRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS  183 (318)
Q Consensus       123 ~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  183 (318)
                      +|++..+                     .......++..++..+.+.+.|+.+.+......
T Consensus        84 ~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        84 ERGVALG---------------------LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             hhhHHHH---------------------HHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            9999988                     778888889999999999999988876655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.41  E-value=4.2e-12  Score=112.88  Aligned_cols=141  Identities=16%  Similarity=0.073  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......+...++.+..|++.||+|||+.+..+.....++.+.....           ++.+...+.-.+.+.+.+...
T Consensus        47 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~~~G~~~~~~~  115 (390)
T PRK03545         47 GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----------WNFTVLLISRIGIAFAHAIFW  115 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH
Confidence            477777888888899999999999999999999988888877766652           234444444444444444333


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                       +...+++.|..|+++|++++|+......++..++|.+.+.+.++.||++.|++.+.++++..+......|+.
T Consensus       116 -~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        116 -SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             -HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence             333367789999999999999999999999999999999999999999999998887777665555545543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=3.5e-12  Score=115.03  Aligned_cols=140  Identities=14%  Similarity=0.149  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......++..+++++.|++.||+|||+.+..+.+...++.++....           .+.+.......+.+.+.+...
T Consensus        61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~g~~~  129 (434)
T PRK11663         61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----------SSLWAFALLWVLNAFFQGWGW  129 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHccc
Confidence            688888999999999999999999999999999988888877766552           223333333444455555444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      .+.. .++.|.+|+++|++++|+.+....+|..++|.+.+.+.++.||++.|.+.+....+..++..+.++|
T Consensus       130 ~~~~-~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        130 PVCA-KLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             hHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4444 7888999999999999999999999999999999999999999999988777665544444433443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.40  E-value=4.7e-12  Score=116.05  Aligned_cols=157  Identities=17%  Similarity=0.055  Sum_probs=116.7

Q ss_pred             hHHhHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658        134 AIIPMFIGEIAESS-IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF  212 (318)
Q Consensus       134 ~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (318)
                      ...|.+.+|+..+. .-++....+.++.....+..|+++||+|||+.+..+..+..++.++....           .+.+
T Consensus        27 ~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-----------~~~~   95 (495)
T PRK14995         27 VAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-----------PTAS   95 (495)
T ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-----------CCHH
Confidence            33444444443322 22577788888888999999999999999999999998888888777662           3344


Q ss_pred             hHHHHHHHHHHHHHhcccccceeeeccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q psy16658        213 LPLLSVIFFIVMFSLGYGPIPWMMVGEL-FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVG  291 (318)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  291 (318)
                      ..++.-.+.+.+.+...+... ..+.+. .|+++|+++.|+......+|..++|.+.+.+.++.||++.|++...++.+.
T Consensus        96 ~li~~r~l~G~g~~~~~~~~~-~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~  174 (495)
T PRK14995         96 WLIATRALLAIGAAMIVPATL-AGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVV  174 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence            555555566665554333333 334344 478899999999999999999999999999999999999999988777776


Q ss_pred             HHHhheeccCC
Q psy16658        292 TLFTFVLVPET  302 (318)
Q Consensus       292 ~~~~~~~~~~~  302 (318)
                      .++..+..|++
T Consensus       175 ~~l~~~~l~~~  185 (495)
T PRK14995        175 MGLTARYVPRQ  185 (495)
T ss_pred             HHHHHHhCCCC
Confidence            66666656654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.38  E-value=9.4e-12  Score=110.75  Aligned_cols=141  Identities=15%  Similarity=0.157  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......+...+++++.|++.||+|||+.+..+..+.+++.+.....           .+.+..+..-.+.+.+.+...
T Consensus        58 g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~  126 (394)
T PRK10213         58 GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----------NSFSLLLIGRACLGLALGGFW  126 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------ChHHHHHHHHHHHHHhhHHHH
Confidence            467778888899999999999999999999999988888877666552           224444555556666655543


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .. ...++.|.+|+++|+++.+......+++..++|.+.+.+.+..||+..|++.+.++.+..+......||+
T Consensus       127 ~~-~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        127 AM-SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HH-HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            33 3377889999999999999999999999999999999999999999999888776665544444334543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.38  E-value=9.9e-12  Score=111.28  Aligned_cols=142  Identities=11%  Similarity=0.024  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++++..|++.||+|||+.+..+.++..++..+..+.           .+.+.....-.+.+.+.+...
T Consensus        46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~  114 (412)
T TIGR02332        46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-----------TGPESLYLLRILVGIAEAGFL  114 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHhhHH
Confidence            578888889999999999999999999999998888888877777652           223444555555565555443


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK------NLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                       +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+      ..||++.|.+.+...++..++.+++.||++
T Consensus       115 -~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       115 -PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             -HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence             3333677899999999999999999999999999999998875      358999999887777766666666666654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.38  E-value=2.3e-12  Score=112.61  Aligned_cols=139  Identities=21%  Similarity=0.300  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......+...++.++.|+++||+|||+.+..+..+.+++..+..+.           .+.+.......+.+.+.+...
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~  103 (352)
T PF07690_consen   35 GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----------SNFWLLLIARFLLGIGSGFFS  103 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----------hhHHHHhhhcccccccccccc
Confidence            578888899999999999999999999999999988888884444431           123445555556666655544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      .... .++.|.+|+++|++++++.+....+|..++|.+.+.+.++.+|+..+++.+...++..++...+.+
T Consensus       104 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen  104 PASN-ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHH-HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred             cccc-ccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence            4444 888999999999999999999999999999999999998889999999998888887765444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.37  E-value=7.8e-12  Score=110.58  Aligned_cols=141  Identities=14%  Similarity=0.169  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......++..++.++.|++.||+|||+.+..+.....++.......           .+.+.......+.+.+.+...
T Consensus        29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~   97 (377)
T PRK11102         29 QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----------QTIDQLIYMRFLHGLAAAAAS   97 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHHHHHHHH
Confidence            678888999999999999999999999999999888888777776552           223334444445554444433


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .+.. .++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+++.+....+..+......+|+
T Consensus        98 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102         98 VVIN-ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            3333 77889999999999999999999999999999999999999999999888877777666555555554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.37  E-value=7.7e-12  Score=111.27  Aligned_cols=142  Identities=9%  Similarity=0.122  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+.....++.......           .+.+.......+.+.+.+...
T Consensus        41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~  109 (392)
T PRK10473         41 HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-----------ETSSLFLAGRFLQGIGAGCCY  109 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhhhHHH
Confidence            577778888899999999999999999999998887777777665542           122333333344444433333


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      . ....++.|.+|+++|+++.+..+....++..++|.+.+.+.+..+|+..+++.+....+..++.....+|++
T Consensus       110 ~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        110 V-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3 333777899999999999999999999999999999998888889999898888777776666555555543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.37  E-value=3.4e-12  Score=95.98  Aligned_cols=136  Identities=20%  Similarity=0.284  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658        154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP  233 (318)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (318)
                      ....++..++.+..+++.||++||+.+..+.....++.......           .+.+.......+.+...+.... ..
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~-~~   72 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----------SNITVLIIARFLQGFGAAFALV-AG   72 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHH-hH
Confidence            34567788899999999999999999988877777666655442           2233344445555555444333 34


Q ss_pred             eeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        234 WMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      ..+..|..|+++|+++.+..+....++..++|.+.+.+.+..+|+..+.+.+....+..+..+...||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            37788999999999999999999999999999999999998889888888877777766666554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.2e-11  Score=106.90  Aligned_cols=139  Identities=18%  Similarity=0.169  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |...+.+.++..++.++...+.||+.||+.+.....++.++.++..+.           .+.+..++.=.+.+...+..+
T Consensus        51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-----------p~f~~Ll~aR~~~g~a~G~f~  119 (394)
T COG2814          51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-----------PSFAVLLLARALAGLAHGVFW  119 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999888873           444555555555555555544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      . +..+...++.||++|+++.++......++..+|.++..++-|.+|||..|+..+.++++..+..+..+|
T Consensus       120 ~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         120 S-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             H-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4 444888899999999999999999999999999999999999999999999999999999888888888

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.36  E-value=2.1e-11  Score=107.23  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=109.7

Q ss_pred             hHHhHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658        134 AIIPMFIGEIAES-SIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF  212 (318)
Q Consensus       134 ~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (318)
                      ...|.+.+|..-+ +.-|+....+.++..++++..|++.||+|||+.+.........+......           ..+.+
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----------~~~~~   80 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD-----------PFNYE   80 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-----------hccHH
Confidence            3445555554332 23378888889999999999999999999888765443333332211111           01233


Q ss_pred             hHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q psy16658        213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGT  292 (318)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  292 (318)
                      ..+..-.+.+.+.+. ..+.. ....|.+|+++|++++++.+....+|..+++.+.+.+.++.||+..|.+.+.+..+..
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAF-APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            445555555555443 22223 4457899999999999999999999999999999999999999999998888877777


Q ss_pred             HHhheeccCCC
Q psy16658        293 LFTFVLVPETK  303 (318)
Q Consensus       293 ~~~~~~~~~~~  303 (318)
                      ++.++..||++
T Consensus       159 ~~~~~~lp~~p  169 (368)
T TIGR00903       159 ILVLAALPALP  169 (368)
T ss_pred             HHHHHHcCCCC
Confidence            76666677643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.35  E-value=4.8e-12  Score=111.59  Aligned_cols=141  Identities=13%  Similarity=0.148  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+..+..++.++....           .+.+..++...+.+.+.+...
T Consensus        33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~  101 (379)
T TIGR00881        33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----------TSLWVMAALWALNGIFQGMGW  101 (379)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHhhccccC
Confidence            688889999999999999999999999999999988888877776653           223444555555555544444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT-LCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      + ...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..+.+.+.+..+..++.+...+++
T Consensus       102 ~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       102 P-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             C-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            4 4447888999999999999999999999999999 4666677778899888888777766666666555543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.35  E-value=4.6e-12  Score=115.84  Aligned_cols=141  Identities=17%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|++.||+|||+.+..+..+..++..+....           .+.+.......+.+.+.+...
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~G~~~~~~~  108 (485)
T TIGR00711        40 QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-----------PNLELMIIFRVIQGFGGGPLI  108 (485)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-----------CCHHHHHHHHHHHHhhhhhHH
Confidence            588888999999999999999999999999999888888777766542           233444555555555544433


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                       +....++.|.+|+++|+++.++......+|..++|.+.+.+.++.+|++.|++.+....+..++..+..|++
T Consensus       109 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       109 -PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             -HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence             334478889999999999999999999999999999999999999999999887777666655555555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.35  E-value=1.7e-11  Score=109.77  Aligned_cols=141  Identities=17%  Similarity=0.160  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      ....++.++..+++++.|+++||+|||+.+..+..+..++.+.....           .+.+..++.-.+.+.+.+. ..
T Consensus        55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------~~~~~l~~~r~l~Gi~~~~-~~  122 (413)
T PRK15403         55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----------TSMTQFLIARFIQGTSICF-IA  122 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHH-HH
Confidence            66777788889999999999999999999998888777777666552           2333444444555554433 23


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      +..+....|.+|+++|++.+++.+....++..++|.+.+.+.++.||++.|++.+...++..+..++..||++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            3334677889999999999999999999999999999999999889999999888877776655555566653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.35  E-value=3.4e-11  Score=107.63  Aligned_cols=140  Identities=20%  Similarity=0.248  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |....+..+...++.++.|+++||+|||+.+..+.....++..+....           .+.+...+...+.+...+  .
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~--~  123 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-----------QNIWQFLILRALLGLLGG--F  123 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHhhh--h
Confidence            367778888899999999999999999999998877777766655442           223334444444444322  2


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .+.......|..|+++|+++.+..+....+|..++|.+.+.+.+..+|+..+++.+....+..+......+++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2333356678899999999999999999999999999999999999999999888877766655555545543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.34  E-value=1.9e-11  Score=109.21  Aligned_cols=141  Identities=14%  Similarity=0.065  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|++.||+|||+.+..+..+..++.+.....           .+.+...+...+.+.+.+...
T Consensus        53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~~~~~  121 (406)
T PRK11551         53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA-----------WDFPSLLVARLLTGVGLGGAL  121 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhHHHHH
Confidence            688888999999999999999999999999999887777766555442           223444555555555555444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .... .++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|+..+++.+....+..++.....||+
T Consensus       122 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (406)
T PRK11551        122 PNLI-ALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPES  193 (406)
T ss_pred             HHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3333 77889999999999999999999999999999988888888999888887766555554444445554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.33  E-value=9.7e-12  Score=108.35  Aligned_cols=154  Identities=21%  Similarity=0.301  Sum_probs=134.6

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchh-HHHHHHHHHHHHHHHHHHHh
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKP-VILAFCIPFIISWVLILFAK   88 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~   88 (318)
                      .........|.+.++.      ++.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....+
T Consensus       190 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         190 GYYGLLTYLPLYLQEV------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3344455566666663      5889999999999999999999999999999999999 99999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy16658         89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSV  168 (318)
Q Consensus        89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  168 (318)
                      +.+.+.+..++.|++.+...+...+++.|..|+|+|++.++                     .......++..++..+.+
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASG---------------------LFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998                     888889999999999999


Q ss_pred             HHhhccCCeehhhhhhHHHHHH
Q psy16658        169 VLVDKAGRRILLLLSDFVMALC  190 (318)
Q Consensus       169 ~l~d~~g~~~~~~~~~~~~~~~  190 (318)
                      .+.|+.+.+........+..++
T Consensus       323 ~l~~~~~~~~~~~~~~~~~~i~  344 (352)
T cd06174         323 LLLDTGGYGGVFLILAALALLA  344 (352)
T ss_pred             HHhcccCcchHHHHHHHHHHHH
Confidence            9999888887766554444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG1330|consensus

Probab=99.32  E-value=5.2e-13  Score=115.52  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |++.....+...+++++.|+++||++||+++..|..+..++.+..++.           ...|...+.-.+.+.+-+...
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-----------~~Fwq~~l~R~~vGiGeAs~~  139 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-----------NHFWQVLLCRGFVGIGEASYS  139 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhccchhhhc
Confidence            799999999999999999999999999999999999999988888874           335666666677777776654


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCCCCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPETKGKT  306 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (318)
                      +..+ .+++|.+|.++|+++.++.+....+|..+|-.....+.+..+ |++.|...+++.++..++..++.+|.+++.
T Consensus       140 ~ia~-s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  140 PIAP-SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             ccch-hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence            4444 999999999999999999999999999999888888888777 999999999999998888888777765443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.31  E-value=5.4e-11  Score=106.00  Aligned_cols=140  Identities=16%  Similarity=0.192  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+....+++.+...+.           .+.+.......+.+.+.+...
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~  118 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA-----------PGYITMFIARLVIGIGMGGEY  118 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhhhhhh
Confidence            578888899999999999999999999999998888777777666542           223444555555555555544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .... +++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+  |+..+.+.+...++. ++.....||+
T Consensus       119 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~  191 (405)
T TIGR00891       119 GSSA-AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEA  191 (405)
T ss_pred             HHHH-HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence            4444 778899999999999999999999999999999999988776  888877654444433 3333334543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.31  E-value=7.9e-11  Score=105.06  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......+...+.+++.|+++||+|||+.+..+.....++.+.....           ++.+.......+.+.+.+...
T Consensus        49 gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~~~~~  117 (400)
T PRK11646         49 GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----------HEPWLLWLSCILSGLGGTLFD  117 (400)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH
Confidence            577777788888889999999999999999999988888877776552           223444444455555444333


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      ++.. +.+.|..|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.+....+..++.....|+
T Consensus       118 ~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        118 PPRT-ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            3333 77789999999999999999999999999999999998 6799998888777766655444444454

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=5.2e-12  Score=108.33  Aligned_cols=141  Identities=18%  Similarity=0.236  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.+.+.+.+..-++.++.|.++||.+.|+.+..+++++++..+++++.           .+.+...+...+-+.+.+.++
T Consensus        67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----------~s~~~~~~l~~lng~fQg~Gw  135 (448)
T COG2271          67 GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----------PSLFLFAVLWVLNGWFQGMGW  135 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHhcCCC
Confidence            688889999999999999999999999999999999999999999984           345666777778888899999


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF--VFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      +|.. ..+...+|+++||+..++-|+..++|+.+.|.+.  +.+.++.+|+..|++-++++++..++.++..+++
T Consensus       136 pp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         136 PPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             cHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9988 7778999999999999999999999999999999  9999999999999999999988888887766554

>KOG2563|consensus

Probab=99.30  E-value=1.3e-10  Score=100.51  Aligned_cols=261  Identities=16%  Similarity=0.146  Sum_probs=177.3

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh------hHH--HHHHHHHHHHhh
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK------NVL--MLFAARFIAGVA  103 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~------s~~--~l~~~r~l~G~~  103 (318)
                      ++ +.+..-|+..+|.+.+....+++-|+.||+|-|...+++..+..+++.+-..+.      .++  ....+..+.+.+
T Consensus        75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A  153 (480)
T KOG2563|consen   75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA  153 (480)
T ss_pred             hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence            56 777788999999999999999999999999999999999999999999888762      345  667888899988


Q ss_pred             ccccccccchhhhhccCchhhhHHHH----------------------------------------hhhHhHHhHHHHHH
Q psy16658        104 TGGLSAIIPMFIGEIAESSIRAGVAT----------------------------------------GGLSAIIPMFIGEI  143 (318)
Q Consensus       104 ~g~~~~~~~~~i~~~~~~~~r~~~~~----------------------------------------~~~~~~~p~~~~~~  143 (318)
                      +-........+..-|++++||..+..                                        ....+.+|+.+...
T Consensus       154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~  233 (480)
T KOG2563|consen  154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLF  233 (480)
T ss_pred             hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777888999999999987776                                        01111222211000


Q ss_pred             ----------------hhc-----------ccc-------------------------------------hHHHHHHHHH
Q psy16658        144 ----------------AES-----------SIR-------------------------------------GISAIIVGIV  159 (318)
Q Consensus       144 ----------------~~~-----------~~~-------------------------------------g~~~~~~~~~  159 (318)
                                      ..+           +|+                                     |....+..+.
T Consensus       234 ~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~  313 (480)
T KOG2563|consen  234 VFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVA  313 (480)
T ss_pred             hcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHH
Confidence                            000           000                                     6788888899


Q ss_pred             HHHHHHHHHHHhhccCCe-ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658        160 QFIMTALSVVLVDKAGRR-ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG  238 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (318)
                      +++++.+.|.+.||.++- .+.........++...+......       ....++ +...+.....+..+..|+-..+-.
T Consensus       314 Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-------~~~~vi-v~~t~~~~g~~~~~~~Pig~Elgv  385 (480)
T KOG2563|consen  314 GMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-------LGDSVI-VFTTCGLLGFFGTGYLPIGFELGV  385 (480)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-------CCceEe-hhhhHHHHHHhhcCCCCcceeeee
Confidence            999999999999998754 44444433333332222211111       111222 233333334445566777778888


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG----SAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      |..-|..-++..|+.+..+++-+.+-..+.+...+..+    +...-+.....+.+...+..+..++
T Consensus       386 E~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  386 ETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             eeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            88656666889999999999999899999998888766    4333334444444444444444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.30  E-value=7.2e-11  Score=105.07  Aligned_cols=174  Identities=14%  Similarity=0.162  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALS  167 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  167 (318)
                      ++++.+.+++++..++..........++.|......                        .-++....+.+...+..++.
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------------------------~~~~~~~~~~l~~~l~~~~~   58 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDW------------------------SQPLLQMFFVLAYIVLAPFV   58 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH------------------------HHHHHHHHHHHHHHHHHhhh
Confidence            355666667777776655444444333333322111                        11367778888999999999


Q ss_pred             HHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658        168 VVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG  247 (318)
Q Consensus       168 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~  247 (318)
                      |+++||+|||+++..+..+..++.+.+...           ...   .....+.+.+.+. ..|...+++.|.+|+++|+
T Consensus        59 G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----------~~~---~~~r~l~G~~~a~-~~pa~~a~i~~~~~~~~~~  123 (393)
T PRK11195         59 GAFADSFPKGRVMFIANGIKLLGCLLMLFG-----------IHP---LLAYGLVGIGAAA-YSPAKYGILTELLPGEKLV  123 (393)
T ss_pred             hHhhhccCCchhhHHHHHHHHHHHHHHHHH-----------HHH---HHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHH
Confidence            999999999999999988877766554332           011   2333344444444 3444448889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       248 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      +++|+.+.....+..+||.+.|.+.+.. ++..+.+.+....+. .+.....||.
T Consensus       124 ~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~  176 (393)
T PRK11195        124 KANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRL  176 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence            9999999999999999999999999864 555555544443333 2333445543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.29  E-value=2.9e-10  Score=99.98  Aligned_cols=264  Identities=14%  Similarity=0.080  Sum_probs=178.2

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhhccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAK--NVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~  108 (318)
                      +|.++++..-+.+.|..-.=...+++|+++||+ |+||++.++.++..+|.+..+...  +...+.++-.+.++|.|..=
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            679999998888888888888999999999996 999999999999999999999984  78899999999999999999


Q ss_pred             cccchhhhhccCchhhhHHHH-----------------------------------------------------------
Q psy16658        109 AIIPMFIGEIAESSIRAGVAT-----------------------------------------------------------  129 (318)
Q Consensus       109 ~~~~~~i~~~~~~~~r~~~~~-----------------------------------------------------------  129 (318)
                      +...++++|.+|+++..+--+                                                           
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~  215 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV  215 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence            999999999998776433333                                                           


Q ss_pred             ------------------hhhHhHHh---HHH--------------------------HHHhhcccc-------------
Q psy16658        130 ------------------GGLSAIIP---MFI--------------------------GEIAESSIR-------------  149 (318)
Q Consensus       130 ------------------~~~~~~~p---~~~--------------------------~~~~~~~~~-------------  149 (318)
                                        .......+   ...                          ++..++.+|             
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~i  295 (498)
T COG3104         216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVI  295 (498)
T ss_pred             CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence                              00000000   000                          000011111             


Q ss_pred             -------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCe-------ehhhhhhHHHHHHH
Q psy16658        150 -------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRR-------ILLLLSDFVMALCL  191 (318)
Q Consensus       150 -------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~  191 (318)
                                                     .+...++.+.-++..++..++-.|.+++       .-+..+...++.++
T Consensus       296 FW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~f  375 (498)
T COG3104         296 FWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGF  375 (498)
T ss_pred             HHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHH
Confidence                                           3777888888888888888887774433       12345555666666


Q ss_pred             HHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q psy16658        192 GVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF-  270 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~-  270 (318)
                      +++.......... +...+.++.+....+..++- ...+|+-.+++..+.|++..+..++........++.++..+.+. 
T Consensus       376 l~l~~~~~~~~~~-~~~~s~~~lil~y~l~s~gE-L~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~  453 (498)
T COG3104         376 LILLLAGIWFGGP-SGLVSVWWLVLSYVLQSFGE-LFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT  453 (498)
T ss_pred             HHHHHHHHhhcCC-CCCcCHHHHHHHHHHHHHHH-HHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccc
Confidence            6665542222221 12233444454555554444 44566665888899999988888888877777777777766662 


Q ss_pred             -----HHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        271 -----LVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       271 -----l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                           ..+.......|+..+....+.......
T Consensus       454 ~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         454 AVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             cccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence                 333444555666666666655554444

>TIGR00895 2A0115 benzoate transport

Probab=99.29  E-value=1.5e-11  Score=109.22  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......++..++.++.|++.||+|||+.+..+..+..++..+....           .+.+.......+.+.+.+...
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~  123 (398)
T TIGR00895        55 GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-----------TNVTQLLILRFLAGLGLGGLM  123 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-----------cchHHHHHHHHHHhcccccch
Confidence            467778888899999999999999999999998887777776665542           223334444445554444444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .... +++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+....+..++.....|++
T Consensus       124 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       124 PNLN-ALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             hhHH-HHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            4344 88889999999999999999999999999999999999999999888887666655555555555554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.29  E-value=9.1e-11  Score=105.31  Aligned_cols=144  Identities=20%  Similarity=0.160  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......+...+++++.|+++||++||+.+..+....+++...+.......      ....+.......+.+.+.+...
T Consensus        55 g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~~~~  128 (417)
T PRK10489         55 GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP------EPSLLAIYLLGLWDGFFGSLGV  128 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHHH
Confidence            5788888999999999999999999999999888777666655544321110      1122333444444444444443


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      .+.. ..+.|..|+++|+++.++.+....+|..++|.+.+.+.+..+|++.+.+.+...++..+... ..|+
T Consensus       129 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  198 (417)
T PRK10489        129 TALL-AATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPA  198 (417)
T ss_pred             HHHh-hhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            4444 67789999999999999999999999999999999999998998888777666555544433 3444

>PRK10504 putative transporter; Provisional

Probab=99.28  E-value=9.7e-11  Score=106.82  Aligned_cols=140  Identities=15%  Similarity=0.082  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......+...++.++.|+++||+|||+.+..+.....++.+.....           .+.+.......+.+.+.+...
T Consensus        48 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~~~~~  116 (471)
T PRK10504         48 HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----------GTLNELLLARVLQGVGGAMMV  116 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhhHHHH
Confidence            466777788888999999999999999999988877777666554431           223344455555555555433


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      + .....+.|.+|+++|+++.|+.+....++..++|.+.+.+.++.||++.|.+......+..+......++
T Consensus       117 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        117 P-VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3 3337778999999999999999999999999999999999999999999988777666666555554444

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.28  E-value=1.2e-10  Score=103.77  Aligned_cols=142  Identities=15%  Similarity=0.091  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......+...++.++.|+++||+|||+.+..+.....++.......           .+.+.......+.+.+.+.. 
T Consensus        46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~~~-  113 (394)
T PRK11652         46 QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----------HSLTVLIAASAIQGLGTGVG-  113 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHhhhhHH-
Confidence            577888889999999999999999999999988877777766655442           12233344444444433322 


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      .+.......|..++++++.+++..+....++..++|.+.+.+.++.||+..+++.+....+..+......||++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        114 GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            22333566788888899999999999999999999999999999889999998877766655554444456543

>PRK03699 putative transporter; Provisional

Probab=99.28  E-value=1.5e-10  Score=103.10  Aligned_cols=134  Identities=11%  Similarity=0.104  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......++..++.++.|++.||+|||+.+..+.....++..+....           ++.+...+...+.+.+.+...
T Consensus        45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~~~~l~G~~~g~~~  113 (394)
T PRK03699         45 SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----------HSLALFSIAMFVLGVVSGITM  113 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----------chHHHHHHHHHHHHHhhHhhc
Confidence            577788889999999999999999999999988887777777666552           223344445555555555544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHh
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFT  295 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~  295 (318)
                      .... ..+.|.+|+++|++..+..+....+++.++|.+.+.+.+ ..+|+..|.+.+...++..++.
T Consensus       114 ~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        114 SIGT-FLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             cchh-HHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            4444 677899999999999999988888999999999888875 4689999988777665554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.27  E-value=1.3e-10  Score=103.97  Aligned_cols=141  Identities=15%  Similarity=0.078  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .......++..++.++.|+++||+|||+.+..+.....++.......           .+.+.......+.+...+... 
T Consensus        52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~-  119 (406)
T PRK15402         52 TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-----------QSIEQFTLLRFLQGIGLCFIG-  119 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHhHhhhHH-
Confidence            56677888899999999999999999999998887777776665542           223333444444444433322 


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      +.....+.|.+|+++|.+..++......++..++|.+.+.+.++.+|++.+++.+....+..+..+...||++
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3333667899999999999999998888999999999999999899999998888777766665555556543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.26  E-value=2e-11  Score=107.50  Aligned_cols=131  Identities=15%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHhhcccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV--LMLFAARFIAGVATGGLSA  109 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~~~g~~~~  109 (318)
                      ++.++++.+++.+...++..++.++.|++.||+|||+.+..+..+..++.+...+.++.  ..++...++.|++.+...+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence            77888889999999999999999999999999999999999998888888877776643  3345667888998888888


Q ss_pred             ccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658        110 IIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS  183 (318)
Q Consensus       110 ~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  183 (318)
                      ...+++.|.+|+++|++..+                     .......++..++.++.|.+.|..|.+......
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g---------------------~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~  367 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYG---------------------FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVT  367 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhH---------------------HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Confidence            88899999999999999988                     788888899999999999999999877655543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=9e-11  Score=105.59  Aligned_cols=124  Identities=21%  Similarity=0.155  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +.......++..++.++.|++.||+|||+.+..+.....++..+..+.           .+.+...+.-.+.+.+.+...
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~g~g~~~  124 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----------SGVIMLTLSRFIVGMGMAGEY  124 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHhhHH
Confidence            477788889999999999999999999999999988888887766653           223444555555555554444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFS  285 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  285 (318)
                      .... .++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+..+++..
T Consensus       125 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        125 ACAS-TYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHH-HHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            4444 777899999999999999999999999999999999988889998887643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.26  E-value=5.9e-11  Score=108.03  Aligned_cols=132  Identities=20%  Similarity=0.155  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      |.......+...++.+++|+++|| +|||+++..+..+..++..++...           ...+.......+.+.+.+..
T Consensus        51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        51 FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----------IYPDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----------ccHhHHHHHHHHHHhccccc
Confidence            477788888999999999999999 899999999998888888776652           11223333344444444433


Q ss_pred             ccccceeeeccccchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658        229 YGPIPWMMVGELFAPEV---KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL  293 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  293 (318)
                      .+ ...+..+|.+|+++   |+++.++.+...++|..++|.+.+.+.++.||+..|.+.+...+++.+
T Consensus       120 ~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       120 KA-NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             cC-CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            33 33377778887654   888999999999999999999999999999999999887655544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.25  E-value=4e-11  Score=106.33  Aligned_cols=137  Identities=12%  Similarity=0.102  Sum_probs=121.0

Q ss_pred             ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658         11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV   90 (318)
Q Consensus        11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~   90 (318)
                      ........|.+.+|       .|.++.+.|++.+...++..+..++++++.||+|+|+.+.++.++..+..+..+++++.
T Consensus       221 ~~~~~~~~~~~l~~-------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~  293 (382)
T TIGR00902       221 HAAYYGFSAIYWQA-------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF  293 (382)
T ss_pred             HHHHHHHHHHHHHH-------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            33344455666666       89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHH
Q psy16658         91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVV  169 (318)
Q Consensus        91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~  169 (318)
                      +.+++.+++.|+..+...+....++.+. |+++|++..+                     ... ...+++..+++.++|+
T Consensus       294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~---------------------~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQA---------------------LYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 9888887666                     443 4567889999999999


Q ss_pred             HhhccCC
Q psy16658        170 LVDKAGR  176 (318)
Q Consensus       170 l~d~~g~  176 (318)
                      +.|++|.
T Consensus       352 l~~~~g~  358 (382)
T TIGR00902       352 IYPTLGA  358 (382)
T ss_pred             HHHhccH
Confidence            9999985

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.25  E-value=5.8e-11  Score=105.88  Aligned_cols=134  Identities=14%  Similarity=0.150  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhh
Q psy16658         38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGE  117 (318)
Q Consensus        38 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~  117 (318)
                      +.++..+.+.++..++.++.|++.||+||||.+..+..+..++.++..+.++.+.+++.+++.|++.+...+.......|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999999999988888888888888888888889999999999888888888899


Q ss_pred             ccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658        118 IAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLG  192 (318)
Q Consensus       118 ~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~  192 (318)
                      ..|+++|+++.+                     .......++..++.++.|++.|+.|.+..+.....+..++.+
T Consensus       330 ~~~~~~~g~~~g---------------------~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  383 (399)
T PRK05122        330 RVPPQNRGAALG---------------------AYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLA  383 (399)
T ss_pred             hCCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            999999999998                     777778888888899999999999977666655444444433

>PRK11043 putative transporter; Provisional

Probab=99.25  E-value=2.3e-10  Score=102.15  Aligned_cols=137  Identities=18%  Similarity=0.055  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......++..++.++.|+++||+|||+.+..+.....++.......           .+.+.......+.+.+.+...
T Consensus        44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~  112 (401)
T PRK11043         44 SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----------ESAAQLLVLRFVQAVGVCSAA  112 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhhhHHHH
Confidence            578888899999999999999999999999998877777666655542           223333444444444333222


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      . .......|.+|+++++...+..+....++..++|.+.+.+.++.||+..+++.+....+..+.....
T Consensus       113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        113 V-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             H-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            2 2235667889999899999999999999999999999999999999998888877776665554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.23  E-value=6.4e-11  Score=107.83  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.....+.++..+++++.|++.||+|+|+.+..+.++..++.++......         ...+..++.-.+.+.+.+...
T Consensus        79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---------GGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---------cCchHHHHHHHHHHHhcccch
Confidence            68888899999999999999999999999999888777766655433210         112233444445555544444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHhheecc
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-GSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      +... .++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ||+..|.+.++..++..++.+...+
T Consensus       150 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  220 (465)
T TIGR00894       150 PATH-KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA  220 (465)
T ss_pred             hhHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence            4444 78899999999999999999999999999999999999984 9999999888777666555544443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.22  E-value=8.1e-11  Score=105.53  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=105.1

Q ss_pred             CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhhccccccc
Q psy16658         35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK----NVLMLFAARFIAGVATGGLSAI  110 (318)
Q Consensus        35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~  110 (318)
                      +.++.+...+...++..++.++.|++.||+|||+++..+.++..++........    +++.+++.+++.|++.+...+.
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            446779999999999999999999999999999999999999888876666632    3466778899999999988889


Q ss_pred             cchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCC
Q psy16658        111 IPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGR  176 (318)
Q Consensus       111 ~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~  176 (318)
                      ...++.|++|+++|+++.+                     ... ...+++..++.++.|++.|+.|.
T Consensus       329 ~~~~i~~~~p~~~~g~~~g---------------------~~~~~~~~lg~~iGp~l~G~l~~~~g~  374 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQG---------------------LFTLMCNGFGSLLGYILSGVMVEKMFA  374 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHH---------------------HHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            8999999999999999998                     664 45778999999999999999764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.22  E-value=9.9e-11  Score=110.60  Aligned_cols=114  Identities=14%  Similarity=0.115  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhc
Q psy16658         39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEI  118 (318)
Q Consensus        39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  118 (318)
                      ..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+..++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677899999999999999999999999999999999999999999888888889999998888899999999999


Q ss_pred             cCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q psy16658        119 AESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDK  173 (318)
Q Consensus       119 ~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~  173 (318)
                      +|.++|+++++                     +......++.+++.++.+.+.+.
T Consensus       677 ~Pt~~Rgta~G---------------------i~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       677 YPSDKRATAFG---------------------FLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             cCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999                     88888889999999999988765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2325|consensus

Probab=99.22  E-value=1.7e-11  Score=108.57  Aligned_cols=120  Identities=16%  Similarity=0.183  Sum_probs=96.8

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hhHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGR-KPVILAFCIPFIISWV   82 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~   82 (318)
                      +++.+.......+..-.+.++.     |.+.+.+..|++.++..++.+++.+..|++..|.+. |+.++.+.++..++++
T Consensus        43 sfl~~v~~sI~~~s~wpYl~~l-----D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l  117 (488)
T KOG2325|consen   43 SFLVAVQFSIYLTSMWPYLQKL-----DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL  117 (488)
T ss_pred             HHHHhhhheEEEeecchhhhhc-----CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence            3445555555555554444432     378889999999999999999999999999999997 8899999999999999


Q ss_pred             HH-HHH---h-hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658         83 LI-LFA---K-NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        83 ~~-~~~---~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      +. ++.   + .-+.++++|++.|+|.| .....-+|+++....++|.++++
T Consensus       118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a  168 (488)
T KOG2325|consen  118 LYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFA  168 (488)
T ss_pred             HHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHH
Confidence            88 443   3 56889999999999966 45677899999888888888887

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.22  E-value=7.7e-09  Score=89.30  Aligned_cols=234  Identities=15%  Similarity=0.006  Sum_probs=165.1

Q ss_pred             CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chhHHHH-HHHHHHHHHHHHHHH-----h--------hH-
Q psy16658         31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-----RKPVILA-FCIPFIISWVLILFA-----K--------NV-   90 (318)
Q Consensus        31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~--------s~-   90 (318)
                      |++++....+...+...+... ..+.+|+.+|+.+     ||..+++ +..+...+..+.+++     .        .+ 
T Consensus         9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            388999999999999888765 5999999999998     7776554 666666655555553     2        22 


Q ss_pred             --HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhh------------------------------------h
Q psy16658         91 --LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGG------------------------------------L  132 (318)
Q Consensus        91 --~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~------------------------------------~  132 (318)
                        ....+...+.|+|.+...+...+++.|..|+|+|+++.+.+                                    .
T Consensus        88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i  167 (403)
T PF03209_consen   88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI  167 (403)
T ss_pred             HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence              23445667899999999999999999999999999998800                                    0


Q ss_pred             Hh---HHhHHHHHHhh-------cccc----------------------------------------------------h
Q psy16658        133 SA---IIPMFIGEIAE-------SSIR----------------------------------------------------G  150 (318)
Q Consensus       133 ~~---~~p~~~~~~~~-------~~~~----------------------------------------------------g  150 (318)
                      ..   .+...-.|.+.       ++++                                                    -
T Consensus       168 ~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT  247 (403)
T PF03209_consen  168 ALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETT  247 (403)
T ss_pred             HHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHH
Confidence            00   00000011110       0000                                                    1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-ccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVD-KAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      .++...+.+..++....|++.. |.++++....++.....++..+.....        ..+.+.......+++.+.+...
T Consensus       248 ~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--------~~~~~~~~~~~~l~G~g~G~f~  319 (403)
T PF03209_consen  248 RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP--------LGSPWLFRPGVFLLGLGNGLFT  319 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHhhhHHH
Confidence            5666777777888888887766 677788888888888887776665422        2335566666777777666654


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      .... +.+-++.++++.|..+|.-...+.....++..+.|.+.|.
T Consensus       320 vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  320 VGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 4555888888899999999999999999999999999885

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK12382 putative transporter; Provisional

Probab=99.22  E-value=8.2e-11  Score=104.68  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhh
Q psy16658         38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGE  117 (318)
Q Consensus        38 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~  117 (318)
                      +.++..+.+.++..++.++.|++.||+||||.+..+..+..++.++..+.++.+.+.+.+++.|++.+...+...+.+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  329 (392)
T PRK12382        250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK  329 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35666777888888999999999999999999999999988888888888888888889999999999888888889999


Q ss_pred             ccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHH
Q psy16658        118 IAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMAL  189 (318)
Q Consensus       118 ~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~  189 (318)
                      .+|+|+|+++.+                     .......++..++.++.|++.|+.|.+..+.....+..+
T Consensus       330 ~~~~~~~g~~~g---------------------~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~  380 (392)
T PRK12382        330 RVPSQVRGTALG---------------------GYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL  380 (392)
T ss_pred             hcCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            999999999998                     788888899999999999999999977766655443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.22  E-value=2.5e-10  Score=104.76  Aligned_cols=125  Identities=18%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +.......++..++.++.|++.||+|||+.+..+.++..++.+.....           .+.+.......+.+.+.+...
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~  126 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-----------PGYWTLFIARLVIGMGMAGEY  126 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHH
Confidence            577888888999999999999999999999998888887777776652           223344444555555444433


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSV  286 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  286 (318)
                      .... .++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.+|+..+.+...
T Consensus       127 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        127 GSSA-TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            4334 7778999999999999999999999999999999999999999988876433

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=3e-10  Score=101.41  Aligned_cols=129  Identities=15%  Similarity=0.044  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.....+.++..+++++.|++.||+||||.+..+..+..++..........       ..+.+.......+.+.+.+...
T Consensus        51 g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~i~G~g~~~~~  123 (402)
T TIGR00897        51 ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG-------HANYPLILLFYGIRGLGYPLFA  123 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHcchHHHH
Confidence            477888999999999999999999999999998888877765543221000       0122233333334444433322


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISA-FIVTLCFVFLVKNLGSAATFWIFSV  286 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~  286 (318)
                      .... ....|..|+++|++++|+.+....+|. ..+|.+.+.+.+..|++..++....
T Consensus       124 ~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       124 YSFL-VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             hHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            2233 556688899999999999999999986 5889999998888886555444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.21  E-value=1.5e-10  Score=103.15  Aligned_cols=147  Identities=12%  Similarity=0.151  Sum_probs=114.1

Q ss_pred             cccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16658         16 PVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFA   95 (318)
Q Consensus        16 ~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~   95 (318)
                      ..+|.+.++.      ++.++.+.+++.+...+...++.++.|+++||+|||+.+..+.....+........++++.+++
T Consensus       237 ~~~p~~l~~~------~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  310 (393)
T PRK15011        237 INMPLFIINE------LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLG  310 (393)
T ss_pred             HHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3456555432      7889999999888888888889999999999999999888777666665555556778888888


Q ss_pred             HHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658         96 ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG  175 (318)
Q Consensus        96 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g  175 (318)
                      .+++.+++.+...+....+..|..|+ +|+++.+                     .......++..++..+.|.+.|++|
T Consensus       311 ~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~---------------------~~~~~~~lg~~~g~~l~G~i~~~~g  368 (393)
T PRK15011        311 LQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATT---------------------LYTNTSRVGWIIAGSLAGIVAEIWN  368 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99988888777777777888898885 4887777                     6666778899999999999999998


Q ss_pred             CeehhhhhhHHHHHH
Q psy16658        176 RRILLLLSDFVMALC  190 (318)
Q Consensus       176 ~~~~~~~~~~~~~~~  190 (318)
                      .+.....+.....++
T Consensus       369 ~~~~~~~~~~~~~~~  383 (393)
T PRK15011        369 YHAVFWFALVMIIAT  383 (393)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            776655444333333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.20  E-value=1e-09  Score=94.28  Aligned_cols=185  Identities=12%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH-------------------------
Q psy16658         85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS-------------------------  133 (318)
Q Consensus        85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~-------------------------  133 (318)
                      ....+|+.++++-++.|.|.+..++..+.++++..|+|++.+.++      +++.                         
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            356789999999999999999999999999999999998887777      1111                         


Q ss_pred             ------hHHhHHH-----------------HHHhh--------cc---------cc------------------------
Q psy16658        134 ------AIIPMFI-----------------GEIAE--------SS---------IR------------------------  149 (318)
Q Consensus       134 ------~~~p~~~-----------------~~~~~--------~~---------~~------------------------  149 (318)
                            .-.|.+.                 +|.++        ++         ++                        
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~  164 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLV  164 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1123221                 11000        00         00                        


Q ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658        150 ----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL  213 (318)
Q Consensus       150 ----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (318)
                                      +.....+..+.++++++.+++.||+++||.+..+..+..++..+....           . ...
T Consensus       165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----------~-~~~  232 (310)
T TIGR01272       165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----------H-GYV  232 (310)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----------C-CHH
Confidence                            355677888899999999999999999998877766666555333321           1 111


Q ss_pred             HHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q psy16658        214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIF  284 (318)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  284 (318)
                      ......+.+.+.+..++... +...+..|++ .+++.++. ....+|+.+.|.+.|.+.|+.|.+..+++.
T Consensus       233 ~~~~~~l~g~~~s~i~P~~~-s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       233 AMWFVLALGLFNSIMFPTIF-SLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            23344455555555555544 5555666654 46667764 677899999999999999999987777643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.20  E-value=3.8e-10  Score=99.33  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|++.||+|||+.+..+..+..++.++.....          .+.+.......+.+.+.. ..
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~g~~~~-~~  108 (366)
T TIGR00886        40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----------QSYSVLLLLRLFIGIAGG-SF  108 (366)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHhch-hh
Confidence            5888889999999999999999999999999999888888877766531          023334444444444422 23


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hchhhHH-HHHHHHHHHHHHHhhee
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN----------LGSAATF-WIFSVICFVGTLFTFVL  298 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~-~~~~~~~~~~~~~~~~~  298 (318)
                      .+.. .++.|.+|+++|+++.++.....++|..+++.+.+.+.+.          .+|++.+ ...+....+..++....
T Consensus       109 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  187 (366)
T TIGR00886       109 ASCM-PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV  187 (366)
T ss_pred             HhHH-HHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence            3333 6778999999999999999988888888888888777653          3688777 33344444333333333


Q ss_pred             ccC
Q psy16658        299 VPE  301 (318)
Q Consensus       299 ~~~  301 (318)
                      .++
T Consensus       188 ~~~  190 (366)
T TIGR00886       188 GAD  190 (366)
T ss_pred             ccc
Confidence            333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.20  E-value=2.9e-10  Score=101.22  Aligned_cols=128  Identities=14%  Similarity=0.039  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+....+.++..++.+..|++.||+|||+++..+..+.+++.+...+.           ++.+..+..-.+.+.+.+...
T Consensus        47 g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-----------~~~~~ll~~r~l~Gig~~~~~  115 (393)
T PRK09705         47 ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-----------PQSALLLSSALLGGVGIGIIQ  115 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------cchHHHHHHHHHHHhHHHHHh
Confidence            688888889999999999999999999999999999999999888773           334455556666666666554


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-GSAATFWIFSVICFV  290 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~  290 (318)
                      .... ..+.|.+| ++|+.++|........|..+++.+.+.+.++. +|+..+...+...++
T Consensus       116 ~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        116 AVMP-SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             hhhh-HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4444 66777776 67999999999999999999999999998885 788877665554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.19  E-value=1.2e-10  Score=106.38  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=139.9

Q ss_pred             cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658          8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus         8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~   87 (318)
                      ++..+....++|.+.++.      +|.++...|++.+++.+|..++.++.+++.+|+++++.+..+.+..+++.+..+++
T Consensus       231 ~l~~~a~~aLlPl~a~~~------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDV------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHhhhHHHHhhhHHHHHH------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            334444556788888765      89999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALS  167 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  167 (318)
                      ++.+..++..++.|++.....+...+.+.+..|++.|||+++                     ........+..+|..+.
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~s---------------------i~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFS---------------------IYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999988889999999999999999999                     77888888889999999


Q ss_pred             HHHhhccCCeehhhhhhHHHHHHHHHH
Q psy16658        168 VVLVDKAGRRILLLLSDFVMALCLGVL  194 (318)
Q Consensus       168 g~l~d~~g~~~~~~~~~~~~~~~~~~~  194 (318)
                      |.++|.+|.+..+.++.+...++.++.
T Consensus       364 G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  364 GFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999888876655544444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.19  E-value=7.3e-10  Score=101.11  Aligned_cols=136  Identities=12%  Similarity=0.090  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .......++..++.++.|+++||+|||+.+..+.+..+++.++..+.           .+.+...+...+.+.+.+. ..
T Consensus        75 ~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----------~s~~~l~~~r~l~G~~~~~-~~  142 (476)
T PLN00028         75 NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----------SSATGFIAVRFFIGFSLAT-FV  142 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHh-hH
Confidence            55667777888899999999999999999988877777766655542           1223333333444444332 23


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HhchhhHHHHHHHHHHHHHHHhheec
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK---------NLGSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                      +.. .++.|.+|+++|++++|+.+...++|..+++.+.+.+.+         ..||++.|.+.+.+.++..++.+++.
T Consensus       143 ~~~-~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        143 SCQ-YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHH-HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            333 456899999999999999998888888888777765543         14799999988887776665555433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.19  E-value=1.5e-10  Score=104.57  Aligned_cols=145  Identities=14%  Similarity=0.190  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|++.||+|||+.+..+.++.+++..........       ..+.+.......+.+.+.+..+
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~g~~~g~~~  136 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-------TSSIAIMFVLLFLNGWFQGMGW  136 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-------cchHHHHHHHHHHHHHHhhcch
Confidence            377788889999999999999999999999988877777766655432100       0112222333444455555444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ++.. ..+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.+..+++..+..++..||+
T Consensus       137 ~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       137 PPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4444 666789999999999999999999999999988876554 46899999988887777665555555543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG3762|consensus

Probab=99.18  E-value=9.8e-11  Score=103.19  Aligned_cols=135  Identities=17%  Similarity=0.251  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |....+.-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+...           .++|..+-.-.+-+...+..+
T Consensus       409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----------~n~W~vLPieilqgit~aliW  477 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----------QNPWMVLPIEILQGITHALIW  477 (618)
T ss_pred             eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----------cCchheeeHHHHHHHHHHHHH
Confidence            455666667788888999999999999999998877777766666553           567777778888888888888


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALN-WISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ..+. +|+....||+.|.++.++..... .+|-.+|++++|.+.+++|.+..|.++++.+++..++..
T Consensus       478 aa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  478 AAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            8888 99999999999999999998775 578899999999999999999999998888777655443

>KOG3764|consensus

Probab=99.18  E-value=4.5e-11  Score=101.67  Aligned_cols=145  Identities=17%  Similarity=0.239  Sum_probs=124.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      -|++.....+.+.+.+++.|.+.||+|+|..+..+..++..+.+++++.           +..+..+++=.+-+.+.+..
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-----------~sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-----------NSYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-----------chhHHHHHHHHHhhhhHHHH
Confidence            3899999999999999999999999999999999999999999998883           44556666666777776665


Q ss_pred             ccccceeeeccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCC
Q psy16658        229 YGPIPWMMVGELFAPEV-KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK  305 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (318)
                      ...-. ++++|.+|+++ |++++|+.-....+|-.++|..+|.++|..|++..|.+.+.++++-..+.++.++.++.+
T Consensus       177 ~tsgl-amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  177 DTSGL-AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             HhhhH-HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            55555 78889998776 699999999999999999999999999999999999999999999888887776654433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.17  E-value=1.7e-10  Score=101.91  Aligned_cols=133  Identities=13%  Similarity=0.143  Sum_probs=110.0

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      +|.++.+.+++.+.......++.++.|++.||+|||+++..+..+..+......+.++.+.+.+.+++.|++.+...+..
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999998888877778889999999999999999888877766666666677888888889999999988888888


Q ss_pred             chhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658        112 PMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV  186 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  186 (318)
                      ..+..|..|++ |+++.+                     .......++..++..+.|.+.|+.|.+.........
T Consensus       310 ~~~~~~~~~~~-~~~~~~---------------------~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~  362 (375)
T TIGR00899       310 MLYFQDLMPGR-AGAATT---------------------LYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM  362 (375)
T ss_pred             HHHHHHhCcch-hhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            88999988764 557776                     677777788999999999999999877665544333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=4.1e-10  Score=102.18  Aligned_cols=135  Identities=17%  Similarity=0.214  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHH-HHHHHHHHhc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSV-IFFIVMFSLG  228 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  228 (318)
                      ++......+...++.++.|+++||+|||+.+..+..+..++.+...+.           .+.+...... .+.+.+.+..
T Consensus        57 ~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~l~G~~~~~~  125 (455)
T TIGR00892        57 AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS-----------SNVIELYLTAGFITGLGLAFN  125 (455)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHhcchhh
Confidence            566677777778888999999999999999998887777766665442           1122222222 3334444333


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ..+.. ..+.+.+| ++|+++.|+.+....++..++|.+.+.+.+..||+..|++.+.+.++..+..++
T Consensus       126 ~~~~~-~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       126 FQPSL-TMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             hhHHH-HHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            33333 55667775 679999999999999999999999999999999999999988877655444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.17  E-value=1.3e-10  Score=105.77  Aligned_cols=144  Identities=12%  Similarity=-0.023  Sum_probs=105.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      -|+....+.++..++.++.|+++||+|+|+.+..+.+..++....+.......      ..+.+..+..-.+.+.+.+..
T Consensus        66 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~  139 (467)
T PRK09556         66 LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG------SVSLGLMIALWALSGFFQSTG  139 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHHHHHHhcc
Confidence            37888889999999999999999999999999888877777666655421111      122344455555566665655


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHhheec
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL---GSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                      .+... .++.|.+|+++|++++|+......+|..+++.+...+.+..   +|+..|.+.+.+.++..++.++..
T Consensus       140 ~~~~~-~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~  212 (467)
T PRK09556        140 GPCSY-STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYG  212 (467)
T ss_pred             chHHH-HHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhC
Confidence            54444 78899999999999999999999999999998887776653   477777766666655545444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.16  E-value=2.1e-10  Score=103.54  Aligned_cols=131  Identities=19%  Similarity=0.257  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKA-GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      .....+.....++.+++|+++||+ ||||.+..+.+...++..++...          ............+...+.+...
T Consensus        49 ~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----------~~~~~~~~l~l~li~iG~G~~~  118 (493)
T PRK15462         49 ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----------EIHPSFLYLSLAIIVCGYGLFK  118 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHHhccccc
Confidence            566677778888999999999998 99999999988888777655431          0001112222222323333322


Q ss_pred             cccceeeeccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPE--VKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGT  292 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  292 (318)
                      +... ++..|.+|++  +|.++.++.+...++|+.++|.+.+.+.++.||+..|.+.+....++.
T Consensus       119 ~~~~-alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        119 SNVS-CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             ccHH-HHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            3333 7789999875  699999999999999999999999999999999999987655444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.16  E-value=7.2e-10  Score=101.92  Aligned_cols=145  Identities=13%  Similarity=0.083  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .......++..++.++.|+++||+|||+.+..+.++..++.++......    .. .....+..++.-.+.+.+.+...+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~----~~-~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG----SS-PKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC----cc-cchHHHHHHHHHHHHHHHHhhhhH
Confidence            6778888999999999999999999999999888877777665554210    00 001123445555666666666555


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhchhhHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-----------------------NLGSAATFWIFSVI  287 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~  287 (318)
                      ... .+..|.+|+++|+++.++.+....+|..+++.+...+..                       ..+|+..+.+.+..
T Consensus       135 ~~~-~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       135 LSA-IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            555 899999999999999999999999999999988776542                       13688888655554


Q ss_pred             HHHHHHHhheeccCC
Q psy16658        288 CFVGTLFTFVLVPET  302 (318)
Q Consensus       288 ~~~~~~~~~~~~~~~  302 (318)
                      .++. .+..+.+||+
T Consensus       214 ~~i~-~~~~~~lpES  227 (502)
T TIGR00887       214 ALLA-LYFRLTIPET  227 (502)
T ss_pred             HHHH-HHHHHhCCCC
Confidence            4443 3334456775

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.16  E-value=2.4e-10  Score=102.63  Aligned_cols=134  Identities=13%  Similarity=0.044  Sum_probs=113.6

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      .+.+..+.|++.++..+...++.+++|++.||+|||+.+..+..+..++.++.+++++.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999999999999999999999999999999988888899999999999999999988887888


Q ss_pred             chhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658        112 PMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV  186 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  186 (318)
                      ..++.|.+|++.|+...+                     . ......++.+++.++.|++.|..|.+........+
T Consensus       337 ~~~~~~~~~~~~~a~~~~---------------------~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~  391 (420)
T PRK09528        337 FKYITLNFDVRLSATIYL---------------------VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI  391 (420)
T ss_pred             HHHHHHHcCccceeeeee---------------------ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence            889999999988875543                     2 34456788889999999999999977666654333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.16  E-value=5.1e-10  Score=101.52  Aligned_cols=145  Identities=12%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..+++++.|+++||+|||+.+..+..+.+++.+.+.+....       ..+.+.......+.+.+.+...
T Consensus        66 g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~l~gi~~g~~~  138 (452)
T PRK11273         66 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------TSSIAVMFVLLFLCGWFQGMGW  138 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHHHHHhccc
Confidence            477788889999999999999999999999999888877777666543100       1122333444455555555544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFI-VTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ++.. ..+.|.+|+++|++++|+.+....+|..+ +|.+...+....||+..|++.+....+..++..++.||+
T Consensus       139 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        139 PPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             hHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            4444 56678899999999999999998888654 554433343445899999888777666655555555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.15  E-value=8e-10  Score=101.00  Aligned_cols=152  Identities=15%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCc-ccchhHHHHHHHHHHHHHhc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVS-SISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  228 (318)
                      |+......++..++.++.|+++||+|||+.+..+..+..++.+................ ...+..++.-++.+.+.+..
T Consensus        58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~  137 (479)
T PRK10077         58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA  137 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHH
Confidence            47888899999999999999999999999999988887777665554211110000001 11222334445555555554


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      .+... +++.|.+|+++|+++.++.+....+|..+++.+.+.+.        +..||++.|++.+...++..+. .+++|
T Consensus       138 ~~~~~-~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~  215 (479)
T PRK10077        138 SMLSP-MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVP  215 (479)
T ss_pred             hhHHH-HHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCC
Confidence            45445 88899999999999999999998999888877665443        3468999988776666655443 44566


Q ss_pred             CCC
Q psy16658        301 ETK  303 (318)
Q Consensus       301 ~~~  303 (318)
                      |+.
T Consensus       216 ~s~  218 (479)
T PRK10077        216 ETP  218 (479)
T ss_pred             CCc
Confidence            653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.13  E-value=2e-09  Score=96.32  Aligned_cols=137  Identities=12%  Similarity=0.032  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++++..|++.||+|||+.+..+..+.+++..+......        ..+.+..+....+.+.+.+...
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------~~~~~~~l~~~~l~G~g~g~~~  112 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------IMNYTLFLVGLFILTAGLGFLE  112 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHhhHHHHH
Confidence            57888899999999999999999999999999999888888766543210        1223444555556666666555


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhchhhHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK--------------------------NLGSAATFWI  283 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~--------------------------~~g~~~~~~~  283 (318)
                      .+.. .+..+..|+++|++..++.+....+|..++|.+.+.+..                          ..+|+..|.+
T Consensus       113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~  191 (410)
T TIGR00885       113 TAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMI  191 (410)
T ss_pred             hhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 566788899999999999999999999999999887752                          2358888887


Q ss_pred             HHHHHHHHHHHh
Q psy16658        284 FSVICFVGTLFT  295 (318)
Q Consensus       284 ~~~~~~~~~~~~  295 (318)
                      .+.+.++..++.
T Consensus       192 ~a~~~~~~~~~~  203 (410)
T TIGR00885       192 IGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHH
Confidence            777666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.12  E-value=5.5e-09  Score=93.53  Aligned_cols=145  Identities=12%  Similarity=0.135  Sum_probs=100.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      .++...+..+...+.++..|++.||+|.|+.+..+..+..+......+....      ...+.+..++...+.+.+ +..
T Consensus        72 ~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~------~~~s~~~lli~r~l~Gig-g~~  144 (462)
T PRK15034         72 LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN------PNTPFGIFIVIALLCGFA-GAN  144 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc------cCCCHHHHHHHHHHHHHH-HHh
Confidence            3688888899999999999999999999999998888877777666542100      012234445555555554 334


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----H-------------HhchhhHHHHHHHHHHH
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV-----K-------------NLGSAATFWIFSVICFV  290 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~-----~-------------~~g~~~~~~~~~~~~~~  290 (318)
                      +.+.. ..+++.+|+++||++.|+....+++|..+++.+.+.+.     +             ..+++.+..++..+.++
T Consensus       145 f~~~~-~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv  223 (462)
T PRK15034        145 FASSM-GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI  223 (462)
T ss_pred             HHHHH-HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence            44444 77889999999999999998788888777766665544     2             23355666666666666


Q ss_pred             HHHHhheeccC
Q psy16658        291 GTLFTFVLVPE  301 (318)
Q Consensus       291 ~~~~~~~~~~~  301 (318)
                      ..++.++..++
T Consensus       224 ~~i~~~~~~~~  234 (462)
T PRK15034        224 ATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHhCCC
Confidence            66666655544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.12  E-value=8.6e-10  Score=101.09  Aligned_cols=145  Identities=17%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658        153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI  232 (318)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
                      .....++..++.++.|+++||+|||+.+..+.++++++.++..+........   .......+..-.+.+.+.+..++..
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g---~~a~~~l~~~R~l~G~g~g~~~~~~  139 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIG---IWAPILLLLCKMAQGFSVGGEYTGA  139 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHhHhHhhHHHH
Confidence            3556677889999999999999999999999999988888877631100000   0000113344445555555544444


Q ss_pred             ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      . .++.|.+|+++|+...++......+|..+++.+...+.        ++.||+..|++.+...++. ++.....||+
T Consensus       140 ~-~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~es  215 (490)
T PRK10642        140 S-IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEET  215 (490)
T ss_pred             H-HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence            4 88899999999999999988888788877776655443        2578999998866544433 3333345554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=2.5e-09  Score=96.42  Aligned_cols=136  Identities=19%  Similarity=0.101  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658        152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP  231 (318)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (318)
                      ......++..+++++.|+++||+|||+.+..+....+++.+...+.......   ...........-.+.+.+.+..++.
T Consensus        68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~R~l~G~g~g~~~~~  144 (432)
T PRK10406         68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETI---GTWAPALLLLARLFQGLSVGGEYGT  144 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHhhhhhhHhh
Confidence            3444556666999999999999999999999988888888776653110000   0000112333444555554444444


Q ss_pred             cceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHHHHHHHH
Q psy16658        232 IPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFSVICFVG  291 (318)
Q Consensus       232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~  291 (318)
                      .. +++.|..|+++|++..++.......|..+++.+...+.        +..||+..|.+.+...++.
T Consensus       145 ~~-~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        145 SA-TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HH-HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            44 88899999999999999888777777777776655443        2578999998766655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.11  E-value=6.4e-10  Score=101.49  Aligned_cols=125  Identities=13%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +....+........+++|+++|| +||||.+..+.++..++.+.+....          ...........+.+.+.+...
T Consensus        54 ~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~----------~~~~ll~~~~~l~~ig~g~~~  123 (489)
T PRK10207         54 ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL----------LKPDLIFIALGTIAVGNGLFK  123 (489)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHhcccccc
Confidence            44455555666677799999999 9999999999999988887776521          111112233444444444444


Q ss_pred             cccceeeeccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPE--VKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSV  286 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  286 (318)
                      +... +.+.|.+|++  +|+++.++.+...++|..++|.+.|.+.++.||++.|++.+.
T Consensus       124 ~~~~-~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        124 ANPA-SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             CCHH-HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            4444 8888999877  457899999999999999999999999999999999988544

>TIGR00898 2A0119 cation transport protein

Probab=99.10  E-value=1.6e-09  Score=99.82  Aligned_cols=137  Identities=15%  Similarity=0.096  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+.++..++.++..+.           .+.+...+...+.+.+.+.. 
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~-  197 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-----------PNYTVFLVFRLLVGMGIGGI-  197 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHhhccch-
Confidence            588888999999999999999999999999999888877777666552           22344444445544444433 


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .+....++.|.+|+++|+.+.++......+|..+++.+...+.+   |++.+++.+...++..+.. ++.||+
T Consensus       198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            44444888999999999999999988888898888887765543   8888888777666655544 445553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.10  E-value=8.2e-10  Score=100.43  Aligned_cols=143  Identities=15%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+..+..++.++......        ....+..++...+.+.+.+...
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~~~~~  145 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF--------ALSVEMLIVGRVLLGIGVGIAS  145 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHH
Confidence            47888899999999999999999999999999888887777766644211        1112344555555666555544


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF---VFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ... ..++.|.+|+++|+++.++.+....+|..+++.+.   +...+..+|+..|.+.+...++..+ ...+++|+
T Consensus       146 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~  219 (481)
T TIGR00879       146 ALV-PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPES  219 (481)
T ss_pred             hHH-HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence            433 37889999999999999999999999999999988   5555667899888885555444433 33445553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.09  E-value=2.4e-09  Score=94.99  Aligned_cols=152  Identities=12%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALS  167 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  167 (318)
                      .+.+.+..+-++.+++.+...+....+..|.--.+.                        .-|+......++..+++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~------------------------~~G~~~s~~~l~~~~~~~~~   61 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTW------------------------QVGVVSSSYFTGNLVGTLLA   61 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHH------------------------HHHHHHHHHHHHHHHHHHhH
Confidence            456666677777777777776666655554321110                        11478888999999999999


Q ss_pred             HHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658        168 VVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG  247 (318)
Q Consensus       168 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~  247 (318)
                      |++.||+|||+.+..+.....++.......           ++.+...+...+.+.+.+....... ....+..|+++|+
T Consensus        62 g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~~  129 (381)
T PRK03633         62 GYVIKRIGFNRSYYLASLIFAAGCAGLGLM-----------VGFWSWLAWRFVAGIGCAMIWVVVE-SALMCSGTSRNRG  129 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHH
Confidence            999999999999999888888777766552           2344445555555555544333333 4445778888999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658        248 SATGIAVALNWISAFIVTLCFVFLVKNL  275 (318)
Q Consensus       248 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~  275 (318)
                      ++.+..+...++|..++|.+.+.+.+..
T Consensus       130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        130 RLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999887653

>KOG2532|consensus

Probab=99.08  E-value=2.5e-09  Score=96.19  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |++......+.+++.+..|++.||+|-|+++..+.++.++..++..+....         ..+..++.-.+.+...+..+
T Consensus        76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---------~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   76 GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---------GFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---------cchhhHHHHHHhHHHHhHHH
Confidence            688899999999999999999999999999999999999888888775322         22344666666777777766


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      +.+. ....+..|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+.++.+..++.+.+..
T Consensus       147 pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  147 PAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             hhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            6666 8888999999999999999999999999999999999999 99999999999998887776655554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.08  E-value=2.1e-09  Score=97.05  Aligned_cols=121  Identities=20%  Similarity=0.175  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccc
Q psy16658        161 FIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGEL  240 (318)
Q Consensus       161 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (318)
                      .++.++.|++.||+|||+.+..+.....++..+..+........   .......++.-.+.+.+.+...+... .++.|.
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~  145 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIG---LAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEI  145 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHhhccccccHHHHH-HHHHhh
Confidence            46788999999999999999999888888877776631100000   00000122333344444433333344 788999


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHH
Q psy16658        241 FAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFS  285 (318)
Q Consensus       241 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~  285 (318)
                      +|+++|+++.++.....+.+..+++.+.+.+.        +..||+..|++..
T Consensus       146 ~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        146 ATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            99999999999999988888888777776653        4678998887643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.07  E-value=6.8e-08  Score=82.20  Aligned_cols=140  Identities=20%  Similarity=0.225  Sum_probs=105.5

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      +|.++.|++.+....+....+..++.|.++||+||||.-+...++.+++++ +-..++++.++++|++-|++.+..+.+-
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999998885 5566899999999999999999988887


Q ss_pred             chhh-hhccC----chhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCC--eehhhhh
Q psy16658        112 PMFI-GEIAE----SSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGR--RILLLLS  183 (318)
Q Consensus       112 ~~~i-~~~~~----~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~  183 (318)
                      .++. .|.-.    ++..+..++                     ... ..+++..+...+++-+++|+.+.  +.....+
T Consensus       143 EsW~V~Eh~~~g~~~~~L~~tF~---------------------~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a  201 (354)
T PF05631_consen  143 ESWMVHEHNKRGFPQEWLSDTFS---------------------LATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA  201 (354)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHH---------------------HHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence            7765 44321    111111111                     233 34566777777788888888764  5555555


Q ss_pred             hHHHHHHHHH
Q psy16658        184 DFVMALCLGV  193 (318)
Q Consensus       184 ~~~~~~~~~~  193 (318)
                      .....++.++
T Consensus       202 ~~~l~~~~~~  211 (354)
T PF05631_consen  202 IVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.07  E-value=3.9e-09  Score=92.65  Aligned_cols=159  Identities=18%  Similarity=0.136  Sum_probs=99.4

Q ss_pred             HhHHhHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHhhcc-----CCeehh-hhhhHHHHHHHHHHHHhhhhccCCC
Q psy16658        133 SAIIPMFIGEIAESSI-RGISAIIVGIVQFIMTALSVVLVDKA-----GRRILL-LLSDFVMALCLGVLGFYFYMMEDGK  205 (318)
Q Consensus       133 ~~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  205 (318)
                      ....|.+.+|..-+.. -|..... .+...+ .++.|.+.||+     ||||.+ ..+.+..+++...+.+...      
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------   79 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------   79 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc------
Confidence            3455555555432211 1333322 333333 88999999997     788864 5555555555444433210      


Q ss_pred             CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------h
Q psy16658        206 DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--------S  277 (318)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~  277 (318)
                        ....+.......+.+...... .+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.++.+        |
T Consensus        80 --~~~l~~l~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w  156 (356)
T TIGR00901        80 --STDLPLLAGLAFLIAFFSATQ-DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW  156 (356)
T ss_pred             --chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence              111222233333333333332 33334778899999999999999999999999999999999998888        9


Q ss_pred             hhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        278 AATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      +..|++.+....+..+...+..||+
T Consensus       157 r~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       157 GYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999888777666555444444554

>KOG2615|consensus

Probab=99.07  E-value=3.3e-10  Score=95.98  Aligned_cols=111  Identities=17%  Similarity=0.210  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |++-..+++...+.++..|.++||+|||.++..|++..++...+.+..           . ....++..=+.+..+-...
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-----------~-~F~afv~aR~l~Gi~kgnl  138 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-----------R-NFAAFVLARFLGGIFKGNL  138 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHhhhhccCch
Confidence            688889999999999999999999999999999999988887777662           2 2222333233344444444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK  273 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~  273 (318)
                      +..- ++++|+.++++|+.+++..+....+|-.+||.++|++..
T Consensus       139 ~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  139 SVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            4444 889999999999999999999999999999999999987

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.06  E-value=3.3e-09  Score=107.10  Aligned_cols=115  Identities=15%  Similarity=0.217  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      +...++.+...+++++.|+++||+|||+++..+.++..+..++..+....        ...+..++..++.+.+.+... 
T Consensus        51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~-  121 (1146)
T PRK08633         51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--------GWFWLAFAVTFLLGAQSAIYS-  121 (1146)
T ss_pred             HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--------ccHHHHHHHHHHHHHHHHhhc-
Confidence            66777888889999999999999999999988776655544443332111        123444555555555555444 


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      +...+++.|.+|+++|++++|+......+|..+++.+.+.+.+.
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44448899999999999999999999999999999999999876

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.05  E-value=1.1e-09  Score=97.13  Aligned_cols=135  Identities=13%  Similarity=0.083  Sum_probs=112.2

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML   93 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l   93 (318)
                      ....+|.+.+|       .|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.....++.+..+.+++.+.+
T Consensus       224 ~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (382)
T PRK11128        224 YYGFSAIYWQA-------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWL  296 (382)
T ss_pred             HHHHHHHHHHH-------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            34445666555       78899999999999999999999999999999999999999999999888888889999999


Q ss_pred             HHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhh
Q psy16658         94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVD  172 (318)
Q Consensus        94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d  172 (318)
                      ++..++.|++.+...+....++.+. +++++++..+                     ... ...+++..++..++|++.|
T Consensus       297 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        297 IVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQA---------------------LYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888888888886 5566666655                     343 3345666889999999999


Q ss_pred             ccCCe
Q psy16658        173 KAGRR  177 (318)
Q Consensus       173 ~~g~~  177 (318)
                      ++|..
T Consensus       355 ~~g~~  359 (382)
T PRK11128        355 HLGAG  359 (382)
T ss_pred             hccHH
Confidence            99863

>PRK09952 shikimate transporter; Provisional

Probab=99.05  E-value=2.4e-09  Score=96.72  Aligned_cols=132  Identities=12%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658        155 IVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW  234 (318)
Q Consensus       155 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (318)
                      +..+...+++++.|+++||+|||+.+..+....+++..+..+........   ....+..+..-.+.+.+.+..++... 
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~-  147 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG---WWAPVLLVTLRAIQGFAVGGEWGGAA-  147 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHH---HHHHHHHHHHHHHHHhhhcccHHHHH-
Confidence            34466778889999999999999999999888888877776631100000   00001223333445555554444444 


Q ss_pred             eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhchhhHHHHHHHHHHH
Q psy16658        235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK--------NLGSAATFWIFSVICFV  290 (318)
Q Consensus       235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~  290 (318)
                      .++.|..|+++|+...+..+....+|..+++.+...+..        ..||+..|.+.+...++
T Consensus       148 ~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        148 LLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            788899999999999999888888888888777666543        46899888876655433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.03  E-value=5.3e-10  Score=99.05  Aligned_cols=137  Identities=18%  Similarity=0.248  Sum_probs=105.1

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH--HHHHHH--hh
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW--VLILFA--KN   89 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~~--~s   89 (318)
                      ....+|.+.++.      ++.++.+.+...+...++..++.++.|++.||+|||+.+.....+..+..  ....+.  ++
T Consensus       238 ~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (394)
T TIGR00883       238 ITTYLPTYLTQT------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGS  311 (394)
T ss_pred             HHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            344566666432      78889999999999999999999999999999999998775554443333  222222  46


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHH
Q psy16658         90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSV  168 (318)
Q Consensus        90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g  168 (318)
                      .+.+....++.|++.+...+...+++.|.+|+++|+++.+                     ... ....++..++.++.|
T Consensus       312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGAS---------------------LAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEee---------------------ehhHhHHHHHhhHHHHHHH
Confidence            6777778889999988899999999999999999988776                     433 334456668889999


Q ss_pred             HHhhccCCe
Q psy16658        169 VLVDKAGRR  177 (318)
Q Consensus       169 ~l~d~~g~~  177 (318)
                      ++.|+.|..
T Consensus       371 ~l~~~~g~~  379 (394)
T TIGR00883       371 ALVAMTGDW  379 (394)
T ss_pred             HHHHHcCcc
Confidence            999999843

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=98.98  E-value=1.9e-08  Score=88.29  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|++.||+|||+.+..+.....++.... ..           .+.+..+....+.+.+.+...
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----------~~~~~l~~~~~~~g~g~~~~~  105 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----------PGTALLFAGTALIGVGIAIIN  105 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----------ccHHHHHHHHHHHHHHHHHHh
Confidence            688889999999999999999999999999988876665554433 11           123333444444555544433


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFV  290 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~  290 (318)
                      .... ....|.+| ++|+++.+..+....+|..+++.+.+.+.++.+  |+..+...+...++
T Consensus       106 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       106 VLLP-SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             ccch-HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3333 55667775 579999999999999999999999998887753  77777666554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.98  E-value=9.1e-09  Score=103.82  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      +...+..+...+.+++.|+++||++||+++...................        ..+.+.+++..++.+.+.+.. .
T Consensus        56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~l~~~~~l~gi~~a~~-~  126 (1140)
T PRK06814         56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH--------LNSVPLLFAALFLMGIHSALF-G  126 (1140)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHhh-c
Confidence            5666777888899999999999999999764322221111111111100        122445555555666555554 4


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      |...+.+.|.+|+++|+.++|+.++...+|..++|.+.|.+.+..+|+..|...+...++ .++.....+++
T Consensus       127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  197 (1140)
T PRK06814        127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT  197 (1140)
T ss_pred             hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence            455588899999999999999999999999999999999999999998777333333333 33343444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.97  E-value=6.2e-09  Score=95.46  Aligned_cols=124  Identities=15%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658        156 VGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW  234 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (318)
                      .........+++|+++|| +|||+.+..+..+..++..++.+.          ....+.......+.+.+.+...+ ...
T Consensus        66 ~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----------~~~~~~l~~~~~l~gig~g~~~~-~~~  134 (500)
T PRK09584         66 FSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----------GHDAGIVYMGMATIAVGNGLFKA-NPS  134 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhhhcccC-CHH
Confidence            333334445689999999 599999999988888776666542          01122223333444444444333 333


Q ss_pred             eeeccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q psy16658        235 MMVGELFAPEV--KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFV  290 (318)
Q Consensus       235 ~~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  290 (318)
                      ++..|.+|++.  |..+.++.+...++|..++|.+.+++.|+.||++.|.+.+....+
T Consensus       135 ~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        135 SLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            67788887543  456788889999999999999999999999999999887654444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.96  E-value=1.8e-08  Score=90.05  Aligned_cols=132  Identities=19%  Similarity=0.283  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhhcc-----CCee-hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658        161 FIMTALSVVLVDKA-----GRRI-LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW  234 (318)
Q Consensus       161 ~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (318)
                      .+..++.|+++||+     |||| .+..+....+++...+.+..        .....+.......+.+..... ..+...
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~--------~~~~~~~l~~~~~~~~~~~~~-~~~~~~  116 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP--------PHAALWPLAGLAVLVAFLSAS-QDIVFD  116 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            57789999999999     7765 67777777766666554421        011223333333333433333 344444


Q ss_pred             eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      +++.|..|+++|+++.++......+|..+++.+.+.+.+. .||+..|++.+....+..+.. ...+|+
T Consensus       117 al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~  184 (402)
T PRK11902        117 AYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEP  184 (402)
T ss_pred             HHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            8889999999999999999999999999999999999886 489999998887766554433 334544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.96  E-value=4.7e-09  Score=96.14  Aligned_cols=151  Identities=16%  Similarity=0.176  Sum_probs=111.5

Q ss_pred             HHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658        135 IIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP  214 (318)
Q Consensus       135 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (318)
                      ++|.+..|+...++..++.....+...+..++.|+++|.+|||..++.+.++..++.++....           ++....
T Consensus        66 ~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-----------~~~~~~  134 (599)
T PF06609_consen   66 ILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-----------QNMNTF  134 (599)
T ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-----------CcHHHH
Confidence            345555777777777888999999999999999999999999999999999988888877663           334455


Q ss_pred             HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q psy16658        215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLF  294 (318)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  294 (318)
                      +....+.+.+.+...  +....++|+.|.+.|..+.++...........++.+...+..+.+||+.|++.+....+..++
T Consensus       135 iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            666666666544332  233457899999999887776665544445567777776666678999999988877666555


Q ss_pred             hhee
Q psy16658        295 TFVL  298 (318)
Q Consensus       295 ~~~~  298 (318)
                      .+++
T Consensus       213 ~~~f  216 (599)
T PF06609_consen  213 IFFF  216 (599)
T ss_pred             HHHH
Confidence            4433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.96  E-value=2.7e-08  Score=85.79  Aligned_cols=143  Identities=16%  Similarity=0.169  Sum_probs=110.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHh
Q psy16658        148 IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSL  227 (318)
Q Consensus       148 ~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (318)
                      +.+++..+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+.....        +.+..+....+.+...+ 
T Consensus        50 q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~--------~~~~ll~~gll~G~~Ga-  120 (417)
T COG2223          50 QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP--------STWQLLVIGLLLGLAGA-  120 (417)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC--------chHHHHHHHHHHhcccc-
Confidence            447999999999999999999999999999999999888888777777642211        11333444444433322 


Q ss_pred             cccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        228 GYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG---SAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       228 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      .+. ....++++.+|||++|.++|++. .+|+|..+...+.+.+....|   |+....++.....+..+..++..++
T Consensus       121 sFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         121 SFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             eeh-cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            233 33377889999999999999999 999999999999999999988   8888888887777777777665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.90  E-value=1.1e-08  Score=96.11  Aligned_cols=146  Identities=14%  Similarity=0.087  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCC-------------------------
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDG-------------------------  204 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  204 (318)
                      |++...+.++..++.++.+++.||.+|||.+.++.++++++.++..++.+....-                         
T Consensus        71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~  150 (633)
T TIGR00805        71 GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLT  150 (633)
T ss_pred             eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCC
Confidence            5788888999999999999999999999999999999999998887753221000                         


Q ss_pred             ------------CCCc--c-cchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16658        205 ------------KDVS--S-ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV  269 (318)
Q Consensus       205 ------------~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g  269 (318)
                                  .+..  . .....++.-++.+.+.+. ..+...+++.|.+|+++|+...|+.+....+|..+++.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg  229 (633)
T TIGR00805       151 QALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGS  229 (633)
T ss_pred             CCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence                        0000  0 112233344444444433 33444489999999999999999999999999999999999


Q ss_pred             HHHHHh----------------------chhhHHHHHHHHHHHHHHHhh
Q psy16658        270 FLVKNL----------------------GSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       270 ~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      .+.+.+                      +|+..|.+.+.+.++..+..+
T Consensus       230 ~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       230 FCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             HHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988643                      155567776666666554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255|consensus

Probab=98.90  E-value=2.7e-08  Score=92.00  Aligned_cols=137  Identities=17%  Similarity=0.240  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      .+...++.++..+|.++.|.++||+|||+++..+.++..++.+...+.           .+.+..++.-++.+++.....
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-----------~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-----------PNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhccchh
Confidence            478888999999999999999999999999999999988888766662           444455555555555555444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      . ..+.+..|.+++++|+.+..+ ......++..++...+++..  +|++.+++.........++ ++..+|.
T Consensus       190 ~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  190 T-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             H-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            4 444888999999999999999 88888999999999998887  6888888877777766554 3434343

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.89  E-value=5.8e-08  Score=88.98  Aligned_cols=131  Identities=16%  Similarity=0.252  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhhcc-----CCeeh-hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        162 IMTALSVVLVDKA-----GRRIL-LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       162 ~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      .+.++.+.++||+     ||||. +..+.+..+++...+.+..        +....+.......+.+.+.+. ..+...+
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--------~~~~l~~l~~~~~l~~~~~a~-~~i~~~a  130 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--------PGTQLRWLAALAVVIAFCSAS-QDIVFDA  130 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            5789999999999     98885 5566666666655554421        012233334344444444443 3333448


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      +..|.+|+++|+++.++......+|..+++.+.+.+.+ ..||+..|++.+...++..+..+. .||+
T Consensus       131 ~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~  197 (491)
T PRK11010        131 WKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEP  197 (491)
T ss_pred             HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            88899999999999999999999999999999999998 469999999988777666554443 4554

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.88  E-value=3.2e-08  Score=87.68  Aligned_cols=120  Identities=13%  Similarity=0.088  Sum_probs=99.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      .|.+...+..+..+..+..|+++||+|.|+.+..+.+..++...+.++.           ...+.+.+.-++.+.+.+..
T Consensus        64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----------~Sl~~L~i~R~llGvaEA~~  132 (511)
T TIGR00806        64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----------TSVWHMQLMEVFYSVTMAAR  132 (511)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence            3688889999999999999999999999999999998888888888773           23445566667777777766


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFW  282 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  282 (318)
                      + +.. .++.+.+|+++|++++|+.+....+|.++++++.+. ....||+....
T Consensus       133 ~-A~~-syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~  183 (511)
T TIGR00806       133 I-AYS-SYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST  183 (511)
T ss_pred             H-HHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence            6 444 888899999999999999999999999999999999 55678765443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.88  E-value=7.4e-08  Score=86.89  Aligned_cols=153  Identities=16%  Similarity=0.158  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhh----ccCCeehhhhh-hHHHHHHHHHHHHhhhhcc---CCCCCcccc---hhHHHHH
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVD----KAGRRILLLLS-DFVMALCLGVLGFYFYMME---DGKDVSSIS---FLPLLSV  218 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~  218 (318)
                      +....+..+.+.+.+++.|+++|    |+||||.+... .....+++.++.+......   ...+.....   +..+...
T Consensus        42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~  121 (477)
T TIGR01301        42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGF  121 (477)
T ss_pred             HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHH
Confidence            47788888999999999999999    59999988764 4444455454444221110   000000111   1222333


Q ss_pred             HHHHHHHHhcccccceeeeccccchhhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------------chhhHH
Q psy16658        219 IFFIVMFSLGYGPIPWMMVGELFAPEVK--GSATGIAVALNWISAFIVTLCFVFL--VKNL-------------GSAATF  281 (318)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~g~~~~~~~~g~l--~~~~-------------g~~~~~  281 (318)
                      .+..........|.. +++.|..|+++|  +.+.++.+...++|+.+++.+.+..  .+..             +.+..|
T Consensus       122 ~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F  200 (477)
T TIGR01301       122 WILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCF  200 (477)
T ss_pred             HHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHH
Confidence            333444554555555 888999998865  5799999999999999999988865  2221             456788


Q ss_pred             HHHHHHHHHHHHHhheeccCCC
Q psy16658        282 WIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      .+.+.+..++.++..+..+|+.
T Consensus       201 ~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       201 LIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHeeeeeccC
Confidence            8888888888888888777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.87  E-value=9.9e-09  Score=91.30  Aligned_cols=141  Identities=11%  Similarity=-0.017  Sum_probs=105.3

Q ss_pred             ccccccccccccccccCcCCCCChhHHHHHHHHH-HHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH------H
Q psy16658         15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAI-GAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF------A   87 (318)
Q Consensus        15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~   87 (318)
                      ....|.+.+|       .|.++++.|++...... ...++.++.|++.||+|+||.+..+..+.+...+....      .
T Consensus       228 ~~~~~~~l~~-------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  300 (390)
T TIGR02718       228 FGLSKLYLVD-------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLA  300 (390)
T ss_pred             HHHhhHHHHh-------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            3345666666       79999999999888764 66677899999999999999988877665333332221      1


Q ss_pred             hhHHHHHHHHHHHHhhccccccccchhhhhccCc-hhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q psy16658         88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAES-SIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTAL  166 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  166 (318)
                      ++.+.+.....+.++..+...+...+...+..++ +++++.++                     .......++..++..+
T Consensus       301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~---------------------~~~~~~~lg~~~g~~~  359 (390)
T TIGR02718       301 PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVT---------------------AVQSTRDLGELIASSI  359 (390)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence            2333444555666777787878888888788776 78888888                     7888889999999999


Q ss_pred             HHHHhhccCCeehhhhh
Q psy16658        167 SVVLVDKAGRRILLLLS  183 (318)
Q Consensus       167 ~g~l~d~~g~~~~~~~~  183 (318)
                      .|.+.|+.|.+.....+
T Consensus       360 ~G~l~~~~G~~~~f~~~  376 (390)
T TIGR02718       360 AGYLTDRFGYAGGFLSG  376 (390)
T ss_pred             HHHHHHHHccHHHHHHH
Confidence            99999999876555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.86  E-value=4.3e-08  Score=88.76  Aligned_cols=126  Identities=23%  Similarity=0.291  Sum_probs=112.8

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcch--hHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHH
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRK--PVILAFCIPFIISWVLILF--------AKNVLMLFAARFIAG  101 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~s~~~l~~~r~l~G  101 (318)
                      +|++..+...+.-...+...++.+++|++.||+|.|  ++++.+...+.+..+...+        .++-+.+.+.-++.|
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G  391 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG  391 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999  8988888888666666555        567788888999999


Q ss_pred             hhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCee
Q psy16658        102 VATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRI  178 (318)
Q Consensus       102 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~  178 (318)
                      +..|..++..-++.+|..|+++.+..+|                     +.....-....+|.++.|.+.|..|..|
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFg---------------------ly~i~gk~ss~lGPll~g~i~~~tg~~r  447 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFG---------------------LYAITGKASSWLGPLLFGLITDATGSQR  447 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            9999999999999999999999998888                     7777777889999999999999998443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.83  E-value=5e-10  Score=102.67  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=3.0

Q ss_pred             ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658          3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV   82 (318)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~   82 (318)
                      ..+..+...++....++.+.+.       |+++.++.|++.+.+-++..+..++..++.+|-.|-|.+-.+.++.+++++
T Consensus        11 ~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~   83 (539)
T PF03137_consen   11 LGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL   83 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence            3444566777778888888888       999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHH------------h--------------------------------------hHHHHHHHHHHHHhhccccccccc
Q psy16658         83 LILFA------------K--------------------------------------NVLMLFAARFIAGVATGGLSAIIP  112 (318)
Q Consensus        83 ~~~~~------------~--------------------------------------s~~~l~~~r~l~G~~~g~~~~~~~  112 (318)
                      ++++=            .                                      -+..+++++++.|+|....++...
T Consensus        84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            88760            0                                      036678899999999999999999


Q ss_pred             hhhhhccCchhhhHHHH
Q psy16658        113 MFIGEIAESSIRAGVAT  129 (318)
Q Consensus       113 ~~i~~~~~~~~r~~~~~  129 (318)
                      +|+-|.+++++-+...|
T Consensus       164 tYiDDnv~~~~splYiG  180 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIG  180 (539)
T ss_dssp             -----------------
T ss_pred             eeeccccccccCccchh
Confidence            99999999999887777

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10133 L-fucose transporter; Provisional

Probab=98.82  E-value=1.4e-07  Score=85.16  Aligned_cols=114  Identities=15%  Similarity=0.024  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+....+.++..++.+..|++.||+|||+++..+..+..++.++......        ..+.+..+....+.+.+.+...
T Consensus        64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--------a~~~~~ll~~r~l~G~g~g~~~  135 (438)
T PRK10133         64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--------IMNYTLFLVGLFIIAAGLGCLE  135 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHH
Confidence            58888999999999999999999999999999999888888866532110        1234445556666666666655


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV  272 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~  272 (318)
                      .... .++.|..|+++|...++..+....+|..+++.+.+.+.
T Consensus       136 ~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        136 TAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             hhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444 56667777777767899999999999999998877654

>KOG0254|consensus

Probab=98.82  E-value=4.3e-08  Score=90.38  Aligned_cols=139  Identities=14%  Similarity=0.220  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +++.....++..++.++.|+++|++|||+.+..+.+...++.++....           .+.+...+.-++.+.+.+...
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----------~~~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----------PSWYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhccchhhhh
Confidence            488899999999999999999999999999999999999998888874           345666777778887777777


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL--GSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ...+ .+.+|..|++.||...+..+....+|..++ .+.+...++.  +|+..+.+....+++..+. ..+.||+
T Consensus       161 ~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  161 VLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             hcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            7677 999999999999999999999988887777 5555555543  7987777776666666665 5556654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.82  E-value=3.1e-08  Score=88.36  Aligned_cols=133  Identities=12%  Similarity=0.075  Sum_probs=104.7

Q ss_pred             CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Q psy16658         33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP  112 (318)
Q Consensus        33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  112 (318)
                      +.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...+++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999998888888878888999889999999988665555555


Q ss_pred             hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658        113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV  186 (318)
Q Consensus       113 ~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  186 (318)
                      .+..+..+++.++...+                     . ......+++.++.++.|++.|..|.+..+....++
T Consensus       330 ~~~~~~~~~~~~at~~~---------------------~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~  383 (396)
T TIGR00882       330 KYITSQFDVRLSATIYL---------------------IGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI  383 (396)
T ss_pred             HHHHHhCCcceEEEeeh---------------------HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence            56666666666554333                     2 34567889999999999999999876655544333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.80  E-value=1.4e-07  Score=84.76  Aligned_cols=242  Identities=15%  Similarity=0.179  Sum_probs=150.0

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHh
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-----RKPVILAFCIPFIISWVLILFA----KNVLMLFAARFIAGV  102 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G~  102 (318)
                      +|+++++.....+...+...+ .++.|.++|.+.     ||+-++++.++..++.+..+..    .+.....+.-++..+
T Consensus        20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~   98 (433)
T PF03092_consen   20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF   98 (433)
T ss_pred             cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            999999999999988888766 788999999873     4445666777776666655553    346666677788889


Q ss_pred             hccccccccchhhhhccCchh--hhHHHH-----------------------------hhhHhHHhHHH--------HH-
Q psy16658        103 ATGGLSAIIPMFIGEIAESSI--RAGVAT-----------------------------GGLSAIIPMFI--------GE-  142 (318)
Q Consensus       103 ~~g~~~~~~~~~i~~~~~~~~--r~~~~~-----------------------------~~~~~~~p~~~--------~~-  142 (318)
                      |......+..+++.|...++.  |+..-+                             ..+...+|.+.        +| 
T Consensus        99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen   99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER  178 (433)
T ss_pred             HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999985443  333332                             11111111111        21 


Q ss_pred             -------Hh---hc--c-----cc-------------------------------------------------------h
Q psy16658        143 -------IA---ES--S-----IR-------------------------------------------------------G  150 (318)
Q Consensus       143 -------~~---~~--~-----~~-------------------------------------------------------g  150 (318)
                             ..   ++  +     .+                                                       |
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~  258 (433)
T PF03092_consen  179 KVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYG  258 (433)
T ss_pred             cccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHH
Confidence                   00   00  0     00                                                       2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      ....+..++.+++..+..+...++..|+++....++..+..+.-.......+..-..+.. +..+.-..+........+-
T Consensus       259 ~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~m  337 (433)
T PF03092_consen  259 TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEEVIGMIAFM  337 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHHHHHHHHHH
Confidence            344445555566666666655566666666655444433332222211111110000111 2223334445555555566


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG  276 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  276 (318)
                      |.. ..++|+.|+..-|+..++..++.++|..++..+...+.+..+
T Consensus       338 P~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  338 PSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            666 677899999999999999999999999999999999887755

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR01272 gluP glucose/galactose transporter

Probab=98.79  E-value=1.8e-08  Score=86.59  Aligned_cols=139  Identities=11%  Similarity=0.019  Sum_probs=106.7

Q ss_pred             ccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16658         15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF   94 (318)
Q Consensus        15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~   94 (318)
                      ...++.+.+|    .+.+|.++++.++..+.+..+..++.++.+++.||+|+||++.++..+..++.++....++...+ 
T Consensus       160 ~~w~~~yl~~----~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-  234 (310)
T TIGR01272       160 GSFLVNFLSD----PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-  234 (310)
T ss_pred             HHHHHHHHHh----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-
Confidence            3344555544    23378999999999999999999999999999999999999888888888777666655544333 


Q ss_pred             HHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16658         95 AARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKA  174 (318)
Q Consensus        95 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  174 (318)
                      ..-++.|++.+..+|...+...+..|++ .+++.+                     . .....+++.+..++.|.++|+.
T Consensus       235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asa---------------------i-~~~~~~Gg~i~P~l~G~lad~~  291 (310)
T TIGR01272       235 WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSG---------------------I-LCLAIVGGAIVPLLQGSLADCL  291 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHH---------------------H-HHHHHhcchHHHHHHHHHHHhc
Confidence            3555789999999999999999988764 333333                     3 3456677888888999999999


Q ss_pred             CCeehhh
Q psy16658        175 GRRILLL  181 (318)
Q Consensus       175 g~~~~~~  181 (318)
                      |.+..+.
T Consensus       292 g~~~a~~  298 (310)
T TIGR01272       292 GIQLAFA  298 (310)
T ss_pred             cchHHHH
Confidence            8665543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2816|consensus

Probab=98.76  E-value=4.6e-07  Score=81.43  Aligned_cols=212  Identities=17%  Similarity=0.221  Sum_probs=146.6

Q ss_pred             HHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccccccchhhhhccCch
Q psy16658         45 LIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGV--ATGGLSAIIPMFIGEIAESS  122 (318)
Q Consensus        45 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~--~~g~~~~~~~~~i~~~~~~~  122 (318)
                      ...+...+..+..|.++||+|||..+........+......+.. ||.++    +.++  +.+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            44678889999999999999999999999888888777777666 44444    3333  23455778899999999999


Q ss_pred             hhhHHHH------hhhHhHHhHHH-------------------------------HH----Hhhc--c------cc----
Q psy16658        123 IRAGVAT------GGLSAIIPMFI-------------------------------GE----IAES--S------IR----  149 (318)
Q Consensus       123 ~r~~~~~------~~~~~~~p~~~-------------------------------~~----~~~~--~------~~----  149 (318)
                      +|....+      .....+.|...                               +|    .+++  +      .+    
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~  224 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS  224 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch
Confidence            9998888      12222333322                               11    0110  0      00    


Q ss_pred             -------------------------------------------------------hHHHHHHHHHHHHHHHHHH-HHhhc
Q psy16658        150 -------------------------------------------------------GISAIIVGIVQFIMTALSV-VLVDK  173 (318)
Q Consensus       150 -------------------------------------------------------g~~~~~~~~~~~~~~~~~g-~l~d~  173 (318)
                                                                             +......+..+.+++.+.. .+...
T Consensus       225 ~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~  304 (463)
T KOG2816|consen  225 HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI  304 (463)
T ss_pred             hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                   4666777777778777666 67777


Q ss_pred             cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHH
Q psy16658        174 AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIA  253 (318)
Q Consensus       174 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~  253 (318)
                      ++.|+....+.....+......+.           ...|.........  .......|...+..+...+++++|++.++.
T Consensus       305 l~~~~~i~lGl~~~~~~~~~~af~-----------~~~w~~~~~~v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~i  371 (463)
T KOG2816|consen  305 LGEKRLISLGLLSEFLQLLLFAFA-----------TETWMMFAAGVVV--ALAGIVFPAIRAFASILVSPEEQGKVFGII  371 (463)
T ss_pred             HhhhhHhhHHHHHHHHHHHHHHHh-----------ccchhhhHHHHHH--HhhcchhHHHHhHHHhhcccccccchhhHH
Confidence            888888888877777777777763           2233322222222  222223344447777788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy16658        254 VALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       254 ~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      ..+..+.+.++|.+.+.+...
T Consensus       372 s~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  372 SGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             HHHHHHhhhhhHHHHHHHHHH
Confidence            999999999999999988654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.73  E-value=5.9e-08  Score=87.60  Aligned_cols=120  Identities=17%  Similarity=0.328  Sum_probs=98.5

Q ss_pred             CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhhccccccccch
Q psy16658         35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-KNVLMLFAARFIAGVATGGLSAIIPM  113 (318)
Q Consensus        35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~~~~~~  113 (318)
                      +..+.+++.+...++..++.+++++++||+|||+++..+..+..++.+...+. ++.+.+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888899999999999999999999999999988888887777665 45677777888899999999999999


Q ss_pred             hhhhccC-------chhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658        114 FIGEIAE-------SSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG  175 (318)
Q Consensus       114 ~i~~~~~-------~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g  175 (318)
                      +++|..|       ++++|...+                     .......++..++..+.|.+.|..|
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~---------------------~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYS---------------------VRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999876       334555555                     6667778888888888888888766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0569|consensus

Probab=98.70  E-value=1.1e-07  Score=85.05  Aligned_cols=144  Identities=17%  Similarity=0.136  Sum_probs=102.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      |+....++.+++++|++..++++||+|||..+..+.+....+.++.......        .........-++.+...+..
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~--------~~~e~li~GR~i~Gl~~gl~  133 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA--------PSFEMLILGRLIVGLACGLS  133 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHhHHH
Confidence            3588889999999999999999999999999888887777776666654221        23445566666677677776


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHH-hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF-VFLVKN-LGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~-g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ....+ .++.|..|++.||....+......+|..++..+. ..+... ..|+..+......+++.. +.+.+.||+
T Consensus       134 ~~~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PES  207 (485)
T KOG0569|consen  134 TGLVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPES  207 (485)
T ss_pred             HHHHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            67677 8999999999999988888888888888874443 333322 236555555544444443 344456664

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.70  E-value=9.8e-08  Score=82.55  Aligned_cols=128  Identities=20%  Similarity=0.330  Sum_probs=114.8

Q ss_pred             CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658         31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI  110 (318)
Q Consensus        31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~  110 (318)
                      ++|++..+...+.....+...++++++|++.||+|.|+++..+.++..+.++..-+...-..+.+.-.+.|...|..+..
T Consensus       282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~  361 (438)
T COG2270         282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS  361 (438)
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence            49999999999999999999999999999999999999999999999999888888777677777778899999999999


Q ss_pred             cchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeeh
Q psy16658        111 IPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRIL  179 (318)
Q Consensus       111 ~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  179 (318)
                      +-++..+.+|++|-++.+|                     +.....-.....+.+..+.+.|..+.-|.
T Consensus       362 SRSy~~~lvp~~k~~~fFg---------------------lyaltgra~S~~gp~lv~v~t~iTg~~r~  409 (438)
T COG2270         362 SRSYLARLVPKGKEGRFFG---------------------LYALTGRAASFLGPFLVAVITQITGSSRA  409 (438)
T ss_pred             HHHHHHHhCCCccccceee---------------------hhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence            9999999999999888887                     77777778888899999999999886443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.64  E-value=7.7e-07  Score=73.19  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=96.3

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHhhc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-------KNVLMLFAARFIAGVAT  104 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~r~l~G~~~  104 (318)
                      +|+|.+|...+...-.+|..+ +++.|.+.||+|+|.++.++.+...+|......+       .++|.+.+..++.|.+.
T Consensus        32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~  110 (250)
T PF06813_consen   32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS  110 (250)
T ss_pred             hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence            999999999999999999887 5889999999999999999999999999888764       46788888888988888


Q ss_pred             cccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy16658        105 GGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVV  169 (318)
Q Consensus       105 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~  169 (318)
                      +....+......+.+|+ +||.+.+                     +.....++.+.+.+.+...
T Consensus       111 ~~~~ta~lvt~~~NFP~-~RG~vvg---------------------ilk~~~GLSaai~t~i~~~  153 (250)
T PF06813_consen  111 CWFNTASLVTCVRNFPR-SRGTVVG---------------------ILKGFFGLSAAIFTQIYSA  153 (250)
T ss_pred             HHhhhHHHHHHHHhCcc-ccCceeh---------------------hhhHHHHhHHHHHHHHHHH
Confidence            87778877777888984 7998888                     6666677776665444433

>PTZ00207 hypothetical protein; Provisional

Probab=98.63  E-value=5.2e-07  Score=83.32  Aligned_cols=131  Identities=14%  Similarity=0.115  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc
Q psy16658        162 IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF  241 (318)
Q Consensus       162 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (318)
                      ...+..|++.||+|+|+++.++.+...++.++.++.....     ...+.+.+.+...+.+.+.+....... ..+.+.+
T Consensus        76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~-----i~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~F  149 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV-----IEGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVF  149 (591)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence            4566789999999999999999999999888777631110     012234444444455555443333333 4556778


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      | ++||++.|+......+|..+.+.+...+.+ .+++..+++.+.+..+..++.+.+.+
T Consensus       150 p-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        150 P-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            6 679999999999999998764444444443 34667777777777766666655543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.63  E-value=4.7e-08  Score=65.39  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=75.5

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL   85 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~   85 (318)
                      ..|++-..+.|++|.+++|       .++|.++.|++.+...+|+.++.+...++.++..+++.+..+.+...+..+.++
T Consensus         3 amGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    3 AMGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             chhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            4567778889999999999       899999999999999999999999999999998889999999999999999999


Q ss_pred             HHhhHHHHH
Q psy16658         86 FAKNVLMLF   94 (318)
Q Consensus        86 ~~~s~~~l~   94 (318)
                      +.++.+.+.
T Consensus        76 ~~~~~~~w~   84 (85)
T PF06779_consen   76 LTHSFWLWS   84 (85)
T ss_pred             HHhchHHHh
Confidence            999887653

Note that many members are hypothetical proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.62  E-value=2.3e-07  Score=82.33  Aligned_cols=149  Identities=18%  Similarity=0.225  Sum_probs=118.8

Q ss_pred             cccccccccccccccccccccccccCcC-CCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEP-VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +.+...+......+.+.+|       .| .+.+..+.+.+...+.=...-...+++..|+|.|+++.++.+.+++=..+.
T Consensus       218 l~~~~~~~~~~f~~~yl~~-------~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQE-------LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555666666       56 677778888888888888888999999999999999999999999988888


Q ss_pred             HHH-hhHHHHH----HHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHH-HHHH
Q psy16658         85 LFA-KNVLMLF----AARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAI-IVGI  158 (318)
Q Consensus        85 ~~~-~s~~~l~----~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~-~~~~  158 (318)
                      +.. ++.+...    +...++|+..+....+...++.+..|++.|+++-+                     +... ..++
T Consensus       291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~---------------------l~~~~~~Gl  349 (400)
T PF03825_consen  291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG---------------------LYSALSFGL  349 (400)
T ss_pred             HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH---------------------HHHHHHhhH
Confidence            877 4544333    34567999999999999999999999999988777                     5444 4689


Q ss_pred             HHHHHHHHHHHHhhccCCeehhhh
Q psy16658        159 VQFIMTALSVVLVDKAGRRILLLL  182 (318)
Q Consensus       159 ~~~~~~~~~g~l~d~~g~~~~~~~  182 (318)
                      +..+++.++|++.|++|.+.....
T Consensus       350 g~~iG~~igG~l~~~~g~~~~~~~  373 (400)
T PF03825_consen  350 GGAIGSLIGGWLYDAFGARGMFDW  373 (400)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhH
Confidence            999999999999999998865543

>KOG2533|consensus

Probab=98.60  E-value=2.5e-07  Score=83.71  Aligned_cols=143  Identities=17%  Similarity=0.090  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |...+++.++.+++.+.++.+.||++-.+.+....+...+..++-...           .+.+..++.-++.+.+.+.++
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----------~s~~~~ialr~llGl~es~~w  152 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-----------HSFPGLIALRFLLGLFESGGW  152 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhcccc
Confidence            588899999999999999999999996665554433333332222221           234455667777777877777


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK------NLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      ++.. .++...+.+++|+..+|+.++...+|+++++.+...+.+      ..||++.|.+-+++.++..++.++++|+..
T Consensus       153 P~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  153 PGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             hHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            7777 888999999999999999999999999999999988743      468999999999999999988888887654


Q ss_pred             C
Q psy16658        304 G  304 (318)
Q Consensus       304 ~  304 (318)
                      .
T Consensus       232 ~  232 (495)
T KOG2533|consen  232 S  232 (495)
T ss_pred             h
Confidence            3

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.60  E-value=6.6e-08  Score=85.35  Aligned_cols=137  Identities=19%  Similarity=0.170  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658        153 AIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP  231 (318)
Q Consensus       153 ~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (318)
                      ...+...--...+++||++|| +|+|+++..+.+++.++.+.+....         ........+.+.+...+.+..-+.
T Consensus        67 ~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---------~~~~~gl~i~L~~I~iG~Gl~K~N  137 (498)
T COG3104          67 FSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---------VSGPGGLYIGLALIIVGTGLFKPN  137 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---------cccccHHHHHHHHHHhcccccccc
Confidence            333444444567889999999 6999999999999999999988742         012334455555555565555444


Q ss_pred             cceeeeccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheec
Q psy16658        232 IPWMMVGELFAPE--VKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV  299 (318)
Q Consensus       232 ~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (318)
                      .. ..+.|.+|++  .|-.+.++.....++|+.++|.+.+.+.++.||+..|...++-...+.+..+...
T Consensus       138 iS-~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         138 IS-SLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HH-HHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44 7778888643  2677888999999999999999999999999999999888777776666555543

>KOG2504|consensus

Probab=98.58  E-value=5.3e-07  Score=82.32  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      ++...+......+..++.+.+.||+|.|.+.+.+.++..+++++-.+.          +..+...+..-.+.+.+.++.+
T Consensus        84 ~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----------~~i~~l~lt~gvi~G~G~~~~~  153 (509)
T KOG2504|consen   84 AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----------TSLWQLYLTFGVIGGLGLGLIY  153 (509)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhccchhhh
Confidence            467777777778888999999999999999999999999998888774          2222334455566667777777


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      .|.. ..+...+ +++|+.++|+......+|..+-|.+...+.+..||+..+++.+.+.+-.......+.|
T Consensus       154 ~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  154 LPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             cchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777 6666555 5569999999999999999999999999999999999999999888776666666555

>KOG4332|consensus

Probab=98.55  E-value=2.2e-07  Score=75.51  Aligned_cols=218  Identities=16%  Similarity=0.184  Sum_probs=135.0

Q ss_pred             CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658         31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI  110 (318)
Q Consensus        31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~  110 (318)
                      +++..+.++|.+.-+.+-...+...+.|.++||-||||.-+.-++-+.+++ +.-.+++|-.++++|.+-|++.+..+++
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSa  144 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSA  144 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence            378888999998888888888889999999999999996554444444433 3445789999999999999999988887


Q ss_pred             cchh-hhhccCchh-----hhHHHH----------hhhH--------------------------hH-HhHHH----HHH
Q psy16658        111 IPMF-IGEIAESSI-----RAGVAT----------GGLS--------------------------AI-IPMFI----GEI  143 (318)
Q Consensus       111 ~~~~-i~~~~~~~~-----r~~~~~----------~~~~--------------------------~~-~p~~~----~~~  143 (318)
                      .-++ +.|..+++.     ....++          .++.                          ++ ...++    ++.
T Consensus       145 FEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENy  224 (454)
T KOG4332|consen  145 FESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENY  224 (454)
T ss_pred             HHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhcc
Confidence            7665 455542221     111111          0000                          00 00001    000


Q ss_pred             hh------------------------------------------------------cccchHHHHHHHHHHHHHHHHHHH
Q psy16658        144 AE------------------------------------------------------SSIRGISAIIVGIVQFIMTALSVV  169 (318)
Q Consensus       144 ~~------------------------------------------------------~~~~g~~~~~~~~~~~~~~~~~g~  169 (318)
                      .+                                                      +...|.+..-+.++.++|+-+..+
T Consensus       225 gdps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~R  304 (454)
T KOG4332|consen  225 GDPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASR  304 (454)
T ss_pred             CChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHH
Confidence            00                                                      000178888888888888888877


Q ss_pred             HhhccCC--eehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658        170 LVDKAGR--RILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG  247 (318)
Q Consensus       170 l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~  247 (318)
                      +..|-..  ...+.+.+.+.+..+.+..........    ...+...+...+++-...+..++.+. -+-.+..|++.|+
T Consensus       305 l~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~----kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEears  379 (454)
T KOG4332|consen  305 LLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS----KESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARS  379 (454)
T ss_pred             HHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC----cCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHh
Confidence            7666443  345555555555554444333221111    12233335666666666777666666 6667889999998


Q ss_pred             hHHHHHH
Q psy16658        248 SATGIAV  254 (318)
Q Consensus       248 ~~~g~~~  254 (318)
                      +.+.++.
T Consensus       380 timNfFR  386 (454)
T KOG4332|consen  380 TIMNFFR  386 (454)
T ss_pred             hhhhhee
Confidence            7765543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.52  E-value=1.4e-06  Score=78.53  Aligned_cols=147  Identities=16%  Similarity=0.253  Sum_probs=111.9

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL   85 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~   85 (318)
                      +............+.+.++.      .+.+ ...+.+.....++..++.+++++++||+|+||++..+..+.+++.+...
T Consensus       236 ~~~~~~~~~~~~~~y~~~~v------l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~  308 (428)
T PF13347_consen  236 LQWLAFALMNTFLPYYFTYV------LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF  308 (428)
T ss_pred             HHHhhhhhhhhHHHHHHHHH------hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence            33445555566666666664      4444 6778888899999999999999999999999999999999999999999


Q ss_pred             HHh--hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccch----HHHHHHHHH
Q psy16658         86 FAK--NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRG----ISAIIVGIV  159 (318)
Q Consensus        86 ~~~--s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g----~~~~~~~~~  159 (318)
                      +.+  +.+.+++.-++.|++.+...+...++++|..+.+|+.                  ..+++.|    ......-++
T Consensus       309 ~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~------------------tg~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  309 FLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWK------------------TGRRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             HHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHh------------------cCCCchHHHHHhhhhhhHHH
Confidence            886  9999999999999999999999999999999865431                  0011112    444444556


Q ss_pred             HHHHHHHHHHHhhccCCe
Q psy16658        160 QFIMTALSVVLVDKAGRR  177 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g~~  177 (318)
                      ..++..+.+.+.+..|..
T Consensus       371 ~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  371 QGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHHHhCcC
Confidence            666666667666666543

>KOG3098|consensus

Probab=98.52  E-value=1.1e-05  Score=71.96  Aligned_cols=86  Identities=15%  Similarity=0.048  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCch
Q psy16658         43 GSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESS  122 (318)
Q Consensus        43 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  122 (318)
                      .++......+.+++.+.+.|+.|+|+.+.++......-....-+ +|-+.++.+-.+.|+|.+..+...-.+++|..++|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77888888999999999999999999999999988776654444 45566777888999999999999999999999999


Q ss_pred             hhhHHHH
Q psy16658        123 IRAGVAT  129 (318)
Q Consensus       123 ~r~~~~~  129 (318)
                      ++.+..+
T Consensus       135 tie~Nis  141 (461)
T KOG3098|consen  135 TIERNIS  141 (461)
T ss_pred             hHHHHHH
Confidence            9988877

>PRK09848 glucuronide transporter; Provisional

Probab=98.49  E-value=6e-07  Score=81.45  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHH
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVL   91 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--s~~   91 (318)
                      .....|.+.++.      +|.++...++......++..++.++++++.||+|+|+++.++..+..++.+...+.+  +++
T Consensus       247 ~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~  320 (448)
T PRK09848        247 VSASSLFYVRYV------LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLP  320 (448)
T ss_pred             HhhhheeeEeee------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHH
Confidence            334456666553      666655555555555677888999999999999999999999998888887777654  667


Q ss_pred             HHHHHHHHHHhhccccccccchhhhhccCchh
Q psy16658         92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSI  123 (318)
Q Consensus        92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~  123 (318)
                      .+.+..++.|+|.+...+...++.+|..|+++
T Consensus       321 ~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~  352 (448)
T PRK09848        321 VALVALAIASIGQGVTMTVMWALEADTVEYGE  352 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            77777889999999999999999999988654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.46  E-value=7.4e-07  Score=75.62  Aligned_cols=113  Identities=27%  Similarity=0.459  Sum_probs=92.0

Q ss_pred             cccccccccccccccccccccCcCCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDR--GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA   87 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~   87 (318)
                      ......+..+.+..+       ++.+.  .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+...+.
T Consensus        17 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          17 DLGLLSPALPLLLST-------LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             hcchHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            334444555666665       44444  578999999999999999999999999999988888887666666777777


Q ss_pred             hh--HHHHHHHHHHHHhhccccccccchhhhhccCc-hhhhHHHH
Q psy16658         88 KN--VLMLFAARFIAGVATGGLSAIIPMFIGEIAES-SIRAGVAT  129 (318)
Q Consensus        88 ~s--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~  129 (318)
                      .+  .+.+++.|+.+|++.+...+...+++.|+.|+ ++|+...+
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVG  134 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            76  89999999999999999999999999999998 66776666

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.39  E-value=4.5e-06  Score=71.02  Aligned_cols=154  Identities=17%  Similarity=0.193  Sum_probs=122.8

Q ss_pred             ccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658         15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAKNVLML   93 (318)
Q Consensus        15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~s~~~l   93 (318)
                      ...+|.+..|       .|+|..+.|+..+...+.....++....+++|. ++|+.......+..++...+.+.+.-..+
T Consensus       228 ~~WLP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~  300 (395)
T COG2807         228 IGWLPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPI  300 (395)
T ss_pred             HHHHHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3456888888       899999999999999999999999999999964 67778888888888888888777654333


Q ss_pred             HHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q psy16658         94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDK  173 (318)
Q Consensus        94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~  173 (318)
                      .- -++.|+|.|..+|.....+.+..++.+..-..+                    |....+..+....+..+.|++-|.
T Consensus       301 lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LS--------------------gmaQg~GYllAa~GP~l~G~lhDa  359 (395)
T COG2807         301 LW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALS--------------------GMAQGVGYLLAAFGPWLFGFLHDA  359 (395)
T ss_pred             HH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHH--------------------HHhhhhhHHHHhhhhhhHhHHHHh
Confidence            32 489999999999999999999998777765555                    466777777888889999999999


Q ss_pred             cCCeehhhhhhHHHHHHHHHHHH
Q psy16658        174 AGRRILLLLSDFVMALCLGVLGF  196 (318)
Q Consensus       174 ~g~~~~~~~~~~~~~~~~~~~~~  196 (318)
                      .|.-...........+.+...++
T Consensus       360 ~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         360 TGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHh
Confidence            99877666555555555554444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.35  E-value=3.8e-09  Score=95.80  Aligned_cols=143  Identities=14%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +.......++..+|+++.|+++||+|||+.+..+..+..++.++..+....        .+.+.....-.+.+.+.+...
T Consensus        49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~R~~~G~~~g~~~  120 (451)
T PF00083_consen   49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--------NNFWMLLIGRFLIGFGIGGAY  120 (451)
T ss_pred             HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccc
Confidence            477888899999999999999999999999999988888887777663110        134444555566666666655


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN---LGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .... .++.|..|+++|+...++.+....+|..++..+.-...+.   .+|+..+.......++..+ ...+.||+
T Consensus       121 ~~~~-~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES  194 (451)
T PF00083_consen  121 VVSP-IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES  194 (451)
T ss_pred             cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            5555 8999999999999999999988888877777665444332   3477766665555544333 33445553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3626|consensus

Probab=98.34  E-value=6.6e-06  Score=76.70  Aligned_cols=118  Identities=13%  Similarity=0.145  Sum_probs=101.9

Q ss_pred             ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658          5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI   84 (318)
Q Consensus         5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~   84 (318)
                      +..++..++....+..+.+.       |+++.++.|++.+.+-++..+...+..+.+-|.-|-|.+-++.++++++++++
T Consensus       107 ~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  107 FAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            34455556667777777777       99999999999999999999999999999999999999999999999999999


Q ss_pred             HHH--------------------h---------------------------h----H-HHHHHHHHHHHhhccccccccc
Q psy16658         85 LFA--------------------K---------------------------N----V-LMLFAARFIAGVATGGLSAIIP  112 (318)
Q Consensus        85 ~~~--------------------~---------------------------s----~-~~l~~~r~l~G~~~g~~~~~~~  112 (318)
                      ++=                    +                           .    + ..++++.++.|+|....++...
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi  259 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI  259 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence            861                    0                           0    2 3567789999999999999999


Q ss_pred             hhhhhccCchhhhHHHH
Q psy16658        113 MFIGEIAESSIRAGVAT  129 (318)
Q Consensus       113 ~~i~~~~~~~~r~~~~~  129 (318)
                      +|+-|...+++-...++
T Consensus       260 sYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  260 SYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             ccccccccccCCcHHHH
Confidence            99999999999887777

>PRK09669 putative symporter YagG; Provisional

Probab=98.33  E-value=2.6e-06  Score=77.19  Aligned_cols=147  Identities=18%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc----cCCeeh-hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDK----AGRRIL-LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM  224 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (318)
                      |....+..+...+..++.|+++||    +||||. +..+....+++..++...  + .. . .....++..+...+....
T Consensus        48 g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~--p-~~-~-~~~~~~~~~~~~~l~~~~  122 (444)
T PRK09669         48 GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT--P-DF-G-ATGKIIYACVTYILLSLV  122 (444)
T ss_pred             HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC--C-CC-C-cchHHHHHHHHHHHHHHH
Confidence            578888888999999999999999    666554 445555555555433221  1 11 0 011122333333344444


Q ss_pred             HHhcccccceeeecccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hchhhHHHHHHHHHHHHHHHhh
Q psy16658        225 FSLGYGPIPWMMVGELF-APEVKGSATGIAVALNWISAFIVTLCFVFLVKN-------LGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       225 ~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      +.....|.. ++..|+. ++++|++..+.......+|..+++.+...+...       .+|+..+.+.+++..+..+..+
T Consensus       123 ~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~  201 (444)
T PRK09669        123 YTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF  201 (444)
T ss_pred             HHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence            444444444 6777876 567799999999888888888887766555543       3455566666666666555555


Q ss_pred             eeccCC
Q psy16658        297 VLVPET  302 (318)
Q Consensus       297 ~~~~~~  302 (318)
                      ...+|+
T Consensus       202 ~~~~e~  207 (444)
T PRK09669        202 FMTKER  207 (444)
T ss_pred             CCeEEe
Confidence            544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.29  E-value=1.1e-05  Score=73.74  Aligned_cols=147  Identities=14%  Similarity=0.104  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhh----ccCCe-ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVD----KAGRR-ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM  224 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d----~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (318)
                      |.+..+..+...+..++.|+++|    |+||| +.+..+...+++++.++...   +.. . .....++..+...++..+
T Consensus        45 g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~---p~~-~-~~~~~~~~~~~~~l~~~~  119 (473)
T PRK10429         45 GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA---HLF-E-GTAQYVFVCVTYILWGMT  119 (473)
T ss_pred             HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC---CCC-C-ccHHHHHHHHHHHHHHHH
Confidence            47778888899999999999999    55885 45555665555555444221   110 0 011122233333444455


Q ss_pred             HHhcccccceeeecccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHHhh
Q psy16658        225 FSLGYGPIPWMMVGELF-APEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-------GSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       225 ~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      +.....|.. ++..|+. ++++|.+..+.-....++++.+.+.+...+.+..       ++.....+.+++..+..+..+
T Consensus       120 ~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~  198 (473)
T PRK10429        120 YTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL  198 (473)
T ss_pred             HHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            555445554 6778887 6888999999877777777666665554443322       344444455555555555555


Q ss_pred             eeccCC
Q psy16658        297 VLVPET  302 (318)
Q Consensus       297 ~~~~~~  302 (318)
                      +..+|+
T Consensus       199 ~~~~e~  204 (473)
T PRK10429        199 RNVHEV  204 (473)
T ss_pred             cCceec
Confidence            545543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.28  E-value=3.9e-06  Score=76.45  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=109.9

Q ss_pred             cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHH
Q psy16658         30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF----------AKNVLMLFAARFI   99 (318)
Q Consensus        30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~r~l   99 (318)
                      +++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++......          .++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            348999999999999999999999999999999999999999999999887755431          1344455666788


Q ss_pred             HHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658        100 AGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG  175 (318)
Q Consensus       100 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g  175 (318)
                      .+++.+........++.+..|+++++...+                     +.....+++..++..++|.+.|.+|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~a---------------------l~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFA---------------------LLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999988                     8888899999999999999999988

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.27  E-value=3.9e-06  Score=73.85  Aligned_cols=129  Identities=14%  Similarity=0.097  Sum_probs=108.8

Q ss_pred             CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Q psy16658         33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP  112 (318)
Q Consensus        33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  112 (318)
                      +.+....|.+.+...+.-.+...+..++.+|+|.|+.++++..++++=-++++++++.+.+.+.+.+.|+-.+.......
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehhhh
Q psy16658        113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILLLL  182 (318)
Q Consensus       113 ~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  182 (318)
                      .++.+.+|+|...+...                     . .....+++..+.+.+.|++-|++|-+.+..+
T Consensus       335 kYI~~~fd~rlsAt~y~---------------------v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli  384 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYL---------------------VGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI  384 (412)
T ss_dssp             HHHHHHS-GGGHHHHHH---------------------HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHhHHHHHHH---------------------HHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence            99999999987654444                     2 2345678888999999999999997765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686|consensus

Probab=98.23  E-value=3.4e-06  Score=69.38  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=107.0

Q ss_pred             ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHhh
Q psy16658         11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFII-SWVLILFAKN   89 (318)
Q Consensus        11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~-~~~~~~~~~s   89 (318)
                      .-+.....|.+........+++|+|+...+-+.+....-..+.+++.|.+.||+|++-..+.+..+..+ +-....+  +
T Consensus       274 v~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t  351 (459)
T KOG4686|consen  274 VLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--T  351 (459)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--h
Confidence            333444556555554455667999999999999999999999999999999999999877665544433 3332222  2


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy16658         90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVV  169 (318)
Q Consensus        90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~  169 (318)
                      .+.=..+..+.|+..+.........++...|+++.|.+.+                     .+..+..++-.+..++.|.
T Consensus       352 ~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTayg---------------------f~qsIqNLgla~i~Iiag~  410 (459)
T KOG4686|consen  352 FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYG---------------------FIQSIQNLGLAFIPIIAGF  410 (459)
T ss_pred             hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHH---------------------HHHHHHhhhhhHHhhhhhe
Confidence            2222344566788777666667778888889999998888                     8888889999999999999


Q ss_pred             HhhccCCe
Q psy16658        170 LVDKAGRR  177 (318)
Q Consensus       170 l~d~~g~~  177 (318)
                      +.|.-|..
T Consensus       411 i~d~~g~y  418 (459)
T KOG4686|consen  411 IADGDGSY  418 (459)
T ss_pred             eecCCCch
Confidence            99987753

>KOG2816|consensus

Probab=98.23  E-value=1.5e-05  Score=71.84  Aligned_cols=138  Identities=24%  Similarity=0.299  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658        155 IVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW  234 (318)
Q Consensus       155 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (318)
                      ..++...+.++..|.++||+|||..+....+.+.+....+.+-             .|+... ..-...++..... ...
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~~~~~~-~~~l~g~~~~~~s-~~~  134 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------GYWFFL-LLGLSGGFSAIFS-VGF  134 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------HHHHhh-hcccccchhhhhh-hhh
Confidence            4467788889999999999999999887766666555555442             122222 1111112222222 333


Q ss_pred             eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658        235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL  307 (318)
Q Consensus       235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (318)
                      ++.+|...++.|....|+.+.....+..++|.+.+.+.+..|....+.+..+...+..+.....+||+.+++.
T Consensus       135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~  207 (463)
T KOG2816|consen  135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE  207 (463)
T ss_pred             hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence            8889999999999999999999999999999999999999998889999888888888888888887654443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.23  E-value=8.2e-07  Score=58.95  Aligned_cols=60  Identities=23%  Similarity=0.345  Sum_probs=50.7

Q ss_pred             cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHH
Q psy16658         10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIP   76 (318)
Q Consensus        10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~   76 (318)
                      ..+...|.+|.+.++       .|+|..|+|.+.++..+...++++++|.++||++++|.++.....
T Consensus        15 ~~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            344556677777777       899999999999999999999999999999999999877665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.19  E-value=1.9e-05  Score=68.67  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhhccC-----Ceehh-hhhhHHHHHHHHHHHHhhhhccC---CCCCcccchh--HHHHHHHHHHHHHhc
Q psy16658        160 QFIMTALSVVLVDKAG-----RRILL-LLSDFVMALCLGVLGFYFYMMED---GKDVSSISFL--PLLSVIFFIVMFSLG  228 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~  228 (318)
                      ..+.++..|+.+|+.+     ||... ..+...+..+..+..........   ........+.  ......+++.+....
T Consensus        27 ~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s  106 (403)
T PF03209_consen   27 VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHAS  106 (403)
T ss_pred             HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHh
Confidence            4457899999999988     76554 44555566655555554444333   1111111222  222333344444444


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIF  284 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  284 (318)
                      ..+.. +++.|..|+|+|+++.++...+--+|..++..+.+.+.|.+......-+.
T Consensus       107 ~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen  107 GTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             HHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            44444 78899999999999999999999999999999999999887654433333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.17  E-value=7.3e-05  Score=68.08  Aligned_cols=147  Identities=14%  Similarity=0.178  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc----cCCeeh-hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDK----AGRRIL-LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM  224 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (318)
                      |.+..+.-+...+.-++.|+++||    +||||. +..+.+.++++..++...  + .. + ......+..+...++..+
T Consensus        48 g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~--p-~~-s-~~~~~~y~~~~~~~~~~~  122 (460)
T PRK11462         48 GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST--P-DL-S-MNGKMIYAAITYTLLTLL  122 (460)
T ss_pred             HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--C-CC-C-cchHHHHHHHHHHHHHHH
Confidence            477788888899999999999997    576654 445656666665544332  1 11 1 011122333344444555


Q ss_pred             HHhcccccceeeeccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHHhh
Q psy16658        225 FSLGYGPIPWMMVGELFA-PEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-------GSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       225 ~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      +.....|.. ++..|+.+ +++|++..+.......+|..+++.+...+.+..       +|.....+.+.+..++..+.+
T Consensus       123 ~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        123 YTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            555444444 66677765 788999999999999998888887776666544       344455555555555555554


Q ss_pred             eeccCC
Q psy16658        297 VLVPET  302 (318)
Q Consensus       297 ~~~~~~  302 (318)
                      ...+|+
T Consensus       202 ~~~kE~  207 (460)
T PRK11462        202 FTTKER  207 (460)
T ss_pred             hcceec
Confidence            444443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.15  E-value=5.9e-05  Score=65.30  Aligned_cols=139  Identities=16%  Similarity=0.075  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      ++....+..+..+..+..+++.+|+|+|+.+..+..++++++.++.....        .......+....+.+.+.+..-
T Consensus        51 ~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~--------~~~y~~FL~~lFila~Gi~~Le  122 (422)
T COG0738          51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS--------SKSYGFFLVALFILASGIGLLE  122 (422)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHhhhHHHH
Confidence            47777888888899999999999999999999999999999988864311        1122223333344444443333


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hchhhHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-------------------LGSAATFWIFSVICFV  290 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~g~~~~~~~~~~~~~~  290 (318)
                      .... .++..+.|++..+.-+.+...++.+|..++|++.+.+..+                   ..++..|...+...++
T Consensus       123 taaN-p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvl  201 (422)
T COG0738         123 TAAN-PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVL  201 (422)
T ss_pred             hccc-hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3333 6667788888888899999999999999999999998872                   1245566666666665


Q ss_pred             HHHHhhe
Q psy16658        291 GTLFTFV  297 (318)
Q Consensus       291 ~~~~~~~  297 (318)
                      ..+....
T Consensus       202 l~v~~~~  208 (422)
T COG0738         202 LAVLILL  208 (422)
T ss_pred             HHHHHHh
Confidence            5554433

>KOG3762|consensus

Probab=98.15  E-value=2e-06  Score=76.64  Aligned_cols=147  Identities=14%  Similarity=0.157  Sum_probs=125.9

Q ss_pred             ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q psy16658         29 VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        29 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~  108 (318)
                      .+|.+..+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+..+..+|.|..+...+++|+..+..+
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW  477 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW  477 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence            45578888888888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHH
Q psy16658        109 AIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM  187 (318)
Q Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  187 (318)
                      .+..+|+++..||+.|..+-+                     ++. .-.+++--+|++++|.+..|++.|....+..+.+
T Consensus       478 aa~~sY~s~vaPp~l~at~Q~---------------------l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc  536 (618)
T KOG3762|consen  478 AAIISYASHVAPPGLRATAQG---------------------LLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC  536 (618)
T ss_pred             HHHHHHHHhhCCCcchHHHHH---------------------HHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence            999999999999999876666                     222 2356677789999999999999998888766555


Q ss_pred             HHHHHHHHH
Q psy16658        188 ALCLGVLGF  196 (318)
Q Consensus       188 ~~~~~~~~~  196 (318)
                      .+.++....
T Consensus       537 l~~l~~~~~  545 (618)
T KOG3762|consen  537 LVTLALFIS  545 (618)
T ss_pred             HHHHHHHHH
Confidence            555544443

>KOG0253|consensus

Probab=98.14  E-value=1.5e-05  Score=68.01  Aligned_cols=84  Identities=21%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             HHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhh
Q psy16658         46 IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA  125 (318)
Q Consensus        46 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~  125 (318)
                      ..+.-.-+.++.+.+.||+|||+.+-.+.++..+..++...+.+-......-+..-+..++.+.+.+.|..|.+|.+.|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34455678899999999999999999999999999988888765444444444444555666778899999999999999


Q ss_pred             HHHH
Q psy16658        126 GVAT  129 (318)
Q Consensus       126 ~~~~  129 (318)
                      ...|
T Consensus       470 tgvG  473 (528)
T KOG0253|consen  470 TGVG  473 (528)
T ss_pred             cchh
Confidence            8877

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.11  E-value=9.6e-05  Score=56.25  Aligned_cols=114  Identities=15%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Q psy16658         33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP  112 (318)
Q Consensus        33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  112 (318)
                      ++++..--.-.++......+++++.+.+.+++|.|+.++++.+...+-. +.-+-++.+.++.+-.+.|++.+..+++..
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~-~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI-ASFFYPNSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence            3444444455667777788888999999999999999999999987543 334567888999999999999999999999


Q ss_pred             hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy16658        113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSV  168 (318)
Q Consensus       113 ~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  168 (318)
                      .++.+..++++|++..+                     ....+.....++|.++.-
T Consensus       112 ~ylt~~s~~~~~~~~~~---------------------ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTG---------------------IFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHcCCHHHHhhHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence            99999999999988776                     666666666666655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252|consensus

Probab=98.10  E-value=9.5e-06  Score=71.11  Aligned_cols=116  Identities=11%  Similarity=0.100  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .......++.++|+++.|++.||+|||+++-..++++.++.++.+........    ...-+++.+.=.+.+++.+ +-.
T Consensus        88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~----~~~m~~L~~~R~~LGiGIG-GDY  162 (538)
T KOG0252|consen   88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP----LGVMMTLCFFRFLLGIGIG-GDY  162 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC----cchhhHHHHHHHHhhcccc-CCC
Confidence            67778889999999999999999999999999999999888855553221110    0111222222333333333 355


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFL  271 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l  271 (318)
                      |+..+.++|....+.||+-.+...+++..|...|..+.-.+
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence            66668999999999999999888888877766655554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.00011  Score=65.73  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHH
Q psy16658         14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVL   91 (318)
Q Consensus        14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--s~~   91 (318)
                      .+..+..+.+..      +|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+  +.+
T Consensus       255 ~~s~~~yy~~y~------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~  328 (467)
T COG2211         255 RGSIMVYYVTYV------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVV  328 (467)
T ss_pred             HhhhhheeEEEE------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchH
Confidence            344445555554      677777888888888999899999999999999999999999999999999999876  788


Q ss_pred             HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHH----HHHHHHHHHHHH
Q psy16658         92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAII----VGIVQFIMTALS  167 (318)
Q Consensus        92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~  167 (318)
                      .+++..++.+++.+...+...++++|..+.+|..                  ..+...|.....    .=++..++..+.
T Consensus       329 l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~------------------TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         329 LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK------------------TGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHHHHHHhhccccccHHHhcchhhHHHHH------------------hCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999998765421                  111122333333    335666777777


Q ss_pred             HHHhhccCCee
Q psy16658        168 VVLVDKAGRRI  178 (318)
Q Consensus       168 g~l~d~~g~~~  178 (318)
                      |+..+..|...
T Consensus       391 g~~L~~~Gyv~  401 (467)
T COG2211         391 GWILGAIGYVP  401 (467)
T ss_pred             HHHHHHcCCCC
Confidence            77777777543

>KOG2325|consensus

Probab=97.93  E-value=0.00015  Score=64.95  Aligned_cols=180  Identities=10%  Similarity=0.100  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q psy16658         93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVD  172 (318)
Q Consensus        93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d  172 (318)
                      ..+..++.+...+...+....|..|.=|...-                      +--|+......++..++++..|+...
T Consensus        39 ~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~----------------------~ffG~viaa~slg~~i~~liF~~Ws~   96 (488)
T KOG2325|consen   39 ALLNSFLVAVQFSIYLTSMWPYLQKLDPTATA----------------------TFFGLVIAASSLGHAIFSLIFGIWSN   96 (488)
T ss_pred             HHHHHHHHhhhheEEEeecchhhhhcCCCCCc----------------------chhhHHHHHHHHHHHhcchhhccccc
Confidence            33445677888888888888888775433211                      11258888899999999999999999


Q ss_pred             ccCC-eehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHH
Q psy16658        173 KAGR-RILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATG  251 (318)
Q Consensus       173 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g  251 (318)
                      |.++ |+.++.+++++.++.++.....+...      ...++.++.-.+.+++.+  .....-.|+++..-++.|.++.+
T Consensus        97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~------~~~y~mL~~R~l~Gvg~~--n~a~lR~Y~a~~s~~~dR~rA~a  168 (488)
T KOG2325|consen   97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPN------GVKYLMLVARILTGVGVG--NFAVLRAYIADASTVEDRPRAFA  168 (488)
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHHhccc------chHHHHHHHHHHcCcCcc--cHHHHHHHHHhccCccchHHHHH
Confidence            9886 88888899999999888855433322      134444544444444432  23334467777666677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        252 IAVALNWISAFIVTLCFVFLVKN-------------LGSAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       252 ~~~~~~~~g~~~~~~~~g~l~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ..+....+|..+||.+...+...             .-+...-|+.+.+.+...++...+++|.
T Consensus       169 ~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  169 ATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             HhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            88887788888888766555421             1134456677777777777777766654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.85  E-value=0.0001  Score=60.82  Aligned_cols=117  Identities=17%  Similarity=0.089  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .+.....++..+ .+..|.+.||+|.+.++.++.....++...+.........    ....|.......+.+.+......
T Consensus        41 ~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~----~~~~~~~~~~~~l~~~s~~~~~t  115 (250)
T PF06813_consen   41 TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP----SLPVWLMCLFLFLGGNSSCWFNT  115 (250)
T ss_pred             HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC----ccchHHHHHHHHHHcccHHHhhh
Confidence            344444555555 4788999999999999999999888888777654322111    12223333323322222222222


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      ... ....+.+|+ +||++.|+.-....+++.+-..+...+.+.
T Consensus       116 a~l-vt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  116 ASL-VTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHH-HHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            222 233467875 699999999999999988877777666554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.85  E-value=0.0005  Score=64.93  Aligned_cols=142  Identities=11%  Similarity=0.092  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        152 SAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      ....+....-+..+++|+++|+ +|+++.+..+.++..++..++.+...+...   ........+..+.+...+.+..-+
T Consensus        28 i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~---~~~~~~~~l~gLaLia~G~GgiKp  104 (654)
T TIGR00926        28 LFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG---HPLHDLLDLLGLALIALGTGGIKP  104 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc---cchHHHHHHHHHHHHHhhcccccc
Confidence            3334444455667788999997 799999999888888888777653211110   011112233444444444444444


Q ss_pred             ccceeeeccccchh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHHhhe
Q psy16658        231 PIPWMMVGELFAPE---VKGSATGIAVALNWISAFIVTLCFVFLVKNL-------GSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       231 ~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ... +...|.++++   .|-+...++....++|+.+++.+.+++.+..       +|...|.+.++..+++.++...
T Consensus       105 ~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       105 CVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             Cch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            444 7777777643   4677888899999999999999999887553       5777887777777766655544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.84  E-value=0.00034  Score=66.03  Aligned_cols=93  Identities=18%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHh
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAKN--------VLMLFAARFIAGV  102 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~s--------~~~l~~~r~l~G~  102 (318)
                      ++.++++...+...+....-+..+++|.++|+ +||+|.+.++.++..++..+.+++..        ....+++-.+..+
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            78888888888888888888999999999996 69999999999999999988877521        2335567788899


Q ss_pred             hccccccccchhhhhccCchhh
Q psy16658        103 ATGGLSAIIPMFIGEIAESSIR  124 (318)
Q Consensus       103 ~~g~~~~~~~~~i~~~~~~~~r  124 (318)
                      |.|+.-|...+...|-++++++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~  119 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQL  119 (654)
T ss_pred             hccccccCchhhhHhhcCccch
Confidence            9999999999999999986544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.76  E-value=0.013  Score=53.05  Aligned_cols=95  Identities=8%  Similarity=0.103  Sum_probs=63.5

Q ss_pred             CCChhHHHHHHHHHHHhhh-hhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH----h---------------------
Q psy16658         35 DRGQASLIGSLIAIGAIFG-ALPAGSIADKFGRKPVILAFCIPFIISWVLILFA----K---------------------   88 (318)
Q Consensus        35 s~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~---------------------   88 (318)
                      ..+.+.++-+...+...+. .++.+++++|++|++++-+....+.....+.++.    +                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467888888888887777 8999999999999998877766666655555543    1                     


Q ss_pred             ------hHHHHHHHHHHHHhhcccccc-ccchhhhhccCchhhhHHHH
Q psy16658         89 ------NVLMLFAARFIAGVATGGLSA-IIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        89 ------s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~  129 (318)
                            +.|...+..+...+-.....+ .-.++.+|.++.+|-.|..+
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~  168 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYA  168 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                  123333344444444444444 55667777777777666655

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.67  E-value=0.002  Score=56.89  Aligned_cols=97  Identities=24%  Similarity=0.367  Sum_probs=84.2

Q ss_pred             cCCCCChhH-HHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658         32 EPVDRGQAS-LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI  110 (318)
Q Consensus        32 ~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~  110 (318)
                      .|++.+|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+.-+.++...+-+..+..|++.+. ..+
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence            678888875 466677778888999999999999999999999999999999999999999999999999999765 567


Q ss_pred             cchhhhhccCchhhhHHHH
Q psy16658        111 IPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus       111 ~~~~i~~~~~~~~r~~~~~  129 (318)
                      ..+++-...|+++--++.+
T Consensus       114 y~sYiys~v~~~~yq~vts  132 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTS  132 (412)
T ss_pred             HHHHheeecCHHHHHHHHH
Confidence            7788888888888776666

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.67  E-value=0.0013  Score=56.59  Aligned_cols=144  Identities=20%  Similarity=0.103  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +.+.........+...+.|.++||+|||+.-+..++...++++.--.            .+.+.+++.=++.+......+
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------------~~~~~L~~GRvlgGiaTSLLf  139 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------------SNYPVLLLGRVLGGIATSLLF  139 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHH
Confidence            35666677778888889999999999999988888877777764322            233344444444444443333


Q ss_pred             cccceeee----ccccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMV----GELFAPEVKGSATGIAVALN-WISAFIVTLCFVFLVKNLGS--AATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~----~~~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      ..-..=++    ..-+|++..+...+...... .+-.+....+...+.|..+.  ..+|.....+..++.++.....+|+
T Consensus       140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            32210111    22356666666666555333 33344455555566666554  5677777777777777666666666


Q ss_pred             CCC
Q psy16658        303 KGK  305 (318)
Q Consensus       303 ~~~  305 (318)
                      .++
T Consensus       220 yg~  222 (354)
T PF05631_consen  220 YGD  222 (354)
T ss_pred             CCC
Confidence            543

>KOG0637|consensus

Probab=97.50  E-value=0.00039  Score=61.23  Aligned_cols=107  Identities=16%  Similarity=0.242  Sum_probs=82.4

Q ss_pred             cccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchhHHHH-HHHHHHHHHHHHHHHhhH
Q psy16658         16 PVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKPVILA-FCIPFIISWVLILFAKNV   90 (318)
Q Consensus        16 ~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~~~s~   90 (318)
                      ..+|.+..+       .|++....+.+--+..+...+.+|+.|..+|    |+||||.++. +..+..++.++..++.+.
T Consensus        53 sy~tPyl~~-------lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDi  125 (498)
T KOG0637|consen   53 SYLTPYLQS-------LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADI  125 (498)
T ss_pred             ccccHHHHH-------cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhh
Confidence            345566666       8889999999988999999999999999999    5899986555 566667777777776543


Q ss_pred             -----------------HHHHHHHHHHHhhccccccccchhhhhccCchhhhH-HHH
Q psy16658         91 -----------------LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAG-VAT  129 (318)
Q Consensus        91 -----------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~  129 (318)
                                       ..++++--+.-++....+..+-+++.|...++++.+ +++
T Consensus       126 g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans  182 (498)
T KOG0637|consen  126 GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANS  182 (498)
T ss_pred             hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccch
Confidence                             445556666777877888999999999997777666 444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.49  E-value=0.016  Score=52.01  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |..-....+.++.++++..++.+|+|..|.=..+...-..+..+............ +.......+....+.-.+. .++
T Consensus       296 gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~~l~~gi~~SR~GL-W~f  373 (432)
T PF06963_consen  296 GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAYLLLGGIALSRIGL-WSF  373 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHH-Hhh
Confidence            46667777888999999999999999887777666655555444443333222110 0111111222222222211 112


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLC  267 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~  267 (318)
                      -.....+++|..|+++||+..|+-+..+++...+.-.+
T Consensus       374 DL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  374 DLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             hHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            22223667899999999999999999998877655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.42  E-value=0.00082  Score=60.67  Aligned_cols=139  Identities=14%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             HHHHHHHHH--HHHHHHHHhhccC-----CeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658        154 IIVGIVQFI--MTALSVVLVDKAG-----RRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS  226 (318)
Q Consensus       154 ~~~~~~~~~--~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (318)
                      ....+..++  ..++.|.++|-+.     ||+.+.++.++..++...+......       ........+.+.+...+..
T Consensus        29 ~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------~~s~~~~~~~l~la~~g~a  101 (433)
T PF03092_consen   29 RLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-------ESSAAIAVVLLFLASFGYA  101 (433)
T ss_pred             HHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------cchhhhHHHHHHHHHHHHH
Confidence            333444443  4668899999863     4444555655554444444432110       1112222333333333333


Q ss_pred             hcccccceeeecccc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        227 LGYGPIPWMMVGELF---APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       227 ~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      ......- +...|..   |.+ |+...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..+..+...+|
T Consensus       102 ~~DV~aD-a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  102 FADVAAD-ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHhhh-HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            3322222 4444554   444 88889999999999999999999999999998888888877766665555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.39  E-value=0.0045  Score=56.06  Aligned_cols=110  Identities=8%  Similarity=0.016  Sum_probs=76.7

Q ss_pred             HHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcc--------------------cchhHHHHHHHHHH
Q psy16658        164 TALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSS--------------------ISFLPLLSVIFFIV  223 (318)
Q Consensus       164 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~  223 (318)
                      .++.+++++|++|++.+..........+.++.+..++..+..+++.                    ..|....+....-.
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el  140 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL  140 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence            7788999999999999888777777777777776555433211100                    01222222222222


Q ss_pred             HHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        224 MFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK  273 (318)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~  273 (318)
                      ......+.+.|.+++|.+.+++..+-.++....+++|..+++.+...+.+
T Consensus       141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333334677899999999999999999999999999999999888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2563|consensus

Probab=97.38  E-value=0.0019  Score=56.99  Aligned_cols=119  Identities=17%  Similarity=0.085  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch--hHHHHHHHHHHHHHhc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF--LPLLSVIFFIVMFSLG  228 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  228 (318)
                      +...++.+..++..+.+.|+.||+|-|.....+.....++..+=.....+.-+     +..+  +......+........
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~-----~~f~~~l~~~Gq~iaa~Aq~Fi  157 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP-----PLFRRPLTHTGQSIAAAAQPFI  157 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc-----ccchhhhhHHhHHHHHHhhhHh
Confidence            67788888999999999999999999999999888888777665553222111     1122  3333333333333222


Q ss_pred             ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL  275 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~  275 (318)
                      . .++.-...-.+|+++|+++..+..+.+.+|.+++..+.+.+..+.
T Consensus       158 m-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  158 L-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             h-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            1 222233445589999999999999999999999988888877543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.30  E-value=0.0036  Score=47.72  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .-..+......+.+++.+.+.+++|.|+.+.++.+...+.......            ...+..+....+.+.+.+..+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------------~~~~~l~~~s~l~G~~~a~lW~  108 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------------PNSYTLYPASALLGFGAALLWT  108 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhhHHhhH
Confidence            4455556667777788889999999999999886666544443322            2245667777777787777777


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV  272 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~  272 (318)
                      +.. .++.+..+++.|++..++...+...+..+|+.+.-.+.
T Consensus       109 aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  109 AQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666 77888888999999999999999988888877665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.16  E-value=0.018  Score=51.61  Aligned_cols=148  Identities=9%  Similarity=0.070  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHH----HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM----ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS  226 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (318)
                      .....-.+..++..+..|...||..|.+....+.+..    ++++.++............+............+.+....
T Consensus        42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~  121 (432)
T PF06963_consen   42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER  121 (432)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence            3444555667777888899999999998876665443    222332222222111111001111111222222222222


Q ss_pred             hcccccceeeecc----c--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658        227 LGYGPIPWMMVGE----L--FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL  298 (318)
Q Consensus       227 ~~~~~~~~~~~~~----~--~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      ........+.-.|    +  -+++...+.++.+.-+-.+...++|.+.|.+.+..++.....+.++..+++...=+++
T Consensus       122 Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  122 LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111111011111    1  1455567788888888888999999999999998888888887878777776655444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574|consensus

Probab=97.15  E-value=0.0057  Score=52.89  Aligned_cols=114  Identities=14%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh-----hhcchhHHHH-HHHHHHH
Q psy16658          6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD-----KFGRKPVILA-FCIPFII   79 (318)
Q Consensus         6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~~   79 (318)
                      +.|.-.|... .+|.+.+.       -|.|.++.+...-+ ...+ ---++|..+.|     |+||||..++ +..+.+.
T Consensus        42 lQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~a-y~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~  111 (510)
T KOG3574|consen   42 LQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFA-YWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL  111 (510)
T ss_pred             HcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhh-hhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence            3456666666 78888886       67777777764322 2222 23678889999     9999996544 4444443


Q ss_pred             HHHHHHHH-----------hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658         80 SWVLILFA-----------KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus        80 ~~~~~~~~-----------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  129 (318)
                      ...+.+..           ++...+....++.-+..+..-.+...+.-....+++-|.+..
T Consensus       112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST  172 (510)
T KOG3574|consen  112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST  172 (510)
T ss_pred             HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence            33333331           233333334455555555555666666667777777765554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.98  E-value=0.0038  Score=55.24  Aligned_cols=120  Identities=12%  Similarity=-0.051  Sum_probs=80.3

Q ss_pred             ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchh---hhhhHHHHHH
Q psy16658        178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPE---VKGSATGIAV  254 (318)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~  254 (318)
                      |++..+.++..++.+++.....+....  +........+.+.+...+.+..-+.+. .+.+|.++++   +|.+....+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~--~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~fY   78 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLP--SGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWFY   78 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC--------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhh--hhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHHH
Confidence            456667777778877765544433321  122234555666666666666555555 7777887654   5677888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        255 ALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       255 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      ...++|..++..+.+++.++.||...|.+.++..+++.+..+...+
T Consensus        79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~  124 (372)
T PF00854_consen   79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999998888777777666555433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.72  E-value=0.031  Score=46.95  Aligned_cols=129  Identities=19%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      +.......+....+.+..|.+.||.|||+.+..+......+.........         ...+.........+...+. .
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~-~  111 (338)
T COG0477          42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---------VGLALLLILRLLQGLGGGG-L  111 (338)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHhhhHH-H
Confidence            36667777777778899999999999997777665543333222222110         1122223333323333332 3


Q ss_pred             cccceeeeccccch-hhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHH--hchhhHHHHHHHHH
Q psy16658        230 GPIPWMMVGELFAP-EVKGSATGIAVA-LNWISAFIVTLCFVFLVKN--LGSAATFWIFSVIC  288 (318)
Q Consensus       230 ~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~  288 (318)
                      .+....+..|..|+ +.|+...+.... ....+..++|.+.+.+.+.  .+|+..+.......
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33444777888887 678888888888 5777888888777766654  45665444443333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.72  E-value=0.075  Score=47.04  Aligned_cols=82  Identities=11%  Similarity=0.019  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhc
Q psy16658         39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEI  118 (318)
Q Consensus        39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  118 (318)
                      .+.+.-+-.+...+..+.+.++.+|+.-+.=...+..++.++.+..+++++.+.=+++-.+.+++.|..-.....+.. .
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            455666777788888889999999998666667777788889999999999998889999999988887766666544 4


Q ss_pred             cCc
Q psy16658        119 AES  121 (318)
Q Consensus       119 ~~~  121 (318)
                      +++
T Consensus       140 y~~  142 (402)
T PF02487_consen  140 YGK  142 (402)
T ss_pred             cCc
Confidence            444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.28  E-value=0.09  Score=48.06  Aligned_cols=114  Identities=12%  Similarity=0.069  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCccc--------------------chhHHHHHH
Q psy16658        160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI--------------------SFLPLLSVI  219 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~  219 (318)
                      .++...+..++.||+++++............+.++++..++..+.-+++..                    .|...+..+
T Consensus        72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv  151 (491)
T PF03219_consen   72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV  151 (491)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            344566788999999999998888878888888887776654432111110                    011111111


Q ss_pred             HHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        220 FFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK  273 (318)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~  273 (318)
                      ..-.-.....+.+.|.+..|..+.++..+-.++.....++|..+++.+...+.+
T Consensus       152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111222333567888999999999999999999999999999988888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3626|consensus

Probab=95.90  E-value=0.06  Score=51.03  Aligned_cols=153  Identities=13%  Similarity=0.120  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccC-------------CC-----------
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMED-------------GK-----------  205 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------  205 (318)
                      |++...+-+++.+...+..++..|.-|-|.+-.+.++++++.++..++-...+.             ..           
T Consensus       135 G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~  214 (735)
T KOG3626|consen  135 GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNK  214 (735)
T ss_pred             eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccC
Confidence            556666667777777788888889888899999999999988888876333211             00           


Q ss_pred             ----------------CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16658        206 ----------------DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV  269 (318)
Q Consensus       206 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g  269 (318)
                                      +.+...|..++..-++.+.......++-..|+-|...+++.....|+..++..+|-++|=.+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS  294 (735)
T KOG3626|consen  215 STNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGS  294 (735)
T ss_pred             CccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHH
Confidence                            0001122222222222222222233444589999998888899999999999999888888888


Q ss_pred             HHHHH------------------hc-hhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        270 FLVKN------------------LG-SAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       270 ~l~~~------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      ...+.                  .| |+..|++.+.+.++..+..++ +|++.
T Consensus       295 ~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~l  346 (735)
T KOG3626|consen  295 FCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKEL  346 (735)
T ss_pred             HHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccC
Confidence            77642                  12 556677777777776665554 44443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.71  E-value=0.0016  Score=60.33  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=0.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCC---C--------------------
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK---D--------------------  206 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------  206 (318)
                      |++...+-++..+..++..++.+|..|-|.+-.+.++++++.+++.++.+..+.-.   .                    
T Consensus        41 G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~  120 (539)
T PF03137_consen   41 GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSS  120 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccc
Confidence            68888888999999999999999988889999999999999999888654432100   0                    


Q ss_pred             ------------CcccchhHHHHHHHHHHHHHhc---ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        207 ------------VSSISFLPLLSVIFFIVMFSLG---YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFL  271 (318)
Q Consensus       207 ------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l  271 (318)
                                  .....+......++.....+.+   ..++-.+|+-|..+++..+...|+..+...+|-++|-.+++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  121 QASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             -------------------------------SSS----------------------------------------------
T ss_pred             cccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence                        0001111122222222222333   3334458999999999999999999999998888887777765


Q ss_pred             H
Q psy16658        272 V  272 (318)
Q Consensus       272 ~  272 (318)
                      .
T Consensus       201 L  201 (539)
T PF03137_consen  201 L  201 (539)
T ss_dssp             -
T ss_pred             H
Confidence            5

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3810|consensus

Probab=95.68  E-value=0.031  Score=47.90  Aligned_cols=97  Identities=16%  Similarity=0.273  Sum_probs=74.5

Q ss_pred             cCCCCChhH-HHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658         32 EPVDRGQAS-LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI  110 (318)
Q Consensus        32 ~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~  110 (318)
                      .+++..|.. -+.-...-.+.+.-.+.=.+.|..--|++++.-.+.....-...-+.++.+.+=+.-+..|...+ .-.+
T Consensus        36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA  114 (433)
T KOG3810|consen   36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA  114 (433)
T ss_pred             CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence            456655553 23334445566667777788999988998888777777777788888999999888999998755 4467


Q ss_pred             cchhhhhccCchhhhHHHH
Q psy16658        111 IPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus       111 ~~~~i~~~~~~~~r~~~~~  129 (318)
                      -++++-+.++++++.++.+
T Consensus       115 YysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen  115 YYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             hhheeeeecCHHHHHHHHH
Confidence            8899999999999988888

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.23  E-value=0.42  Score=42.51  Aligned_cols=122  Identities=15%  Similarity=0.080  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecc
Q psy16658        160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGE  239 (318)
Q Consensus       160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (318)
                      ....-+....+.|..+.|++++.+.+...+...++.+.           ...+.+.+.-+..+...+.  -...++++-.
T Consensus        54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-----------~sv~~mq~~q~~yg~~~a~--evay~sYiys  120 (412)
T PF01770_consen   54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-----------TSVLAMQLMQFFYGLATAA--EVAYYSYIYS  120 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------CcHHHHHHHHHHHHHHHHH--HHHHHHHhee
Confidence            34445566788999999999998877777666666552           3333334444444443332  1122255555


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHH
Q psy16658        240 LFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLF  294 (318)
Q Consensus       240 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~  294 (318)
                      ..|+++--++.+...+..-+|..++..++..+....+  +.....+......++.++
T Consensus       121 ~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~  177 (412)
T PF01770_consen  121 VVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI  177 (412)
T ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            6788888889999999999999999988887776433  433434433333333333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.31  E-value=2.3  Score=38.75  Aligned_cols=40  Identities=10%  Similarity=0.169  Sum_probs=32.1

Q ss_pred             eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      ++-+.+.+|..-|+.+.+.|++.++|+-.-..+.=+++|.
T Consensus       428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            6666777899999999999999999986666666666664

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3098|consensus

Probab=94.13  E-value=0.57  Score=42.42  Aligned_cols=107  Identities=13%  Similarity=0.010  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      ....+......+..++.+.+.|+++.|..+.++..........+..            .+.+......++.+++.+..+.
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------------~N~y~~yfssallG~Gaallw~  121 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------------PNSYYLYFSSALLGFGAALLWT  121 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------------cchHHHHHHHHHhhhhHHheec
Confidence            3367777888889999999999999999999987766666655544            3356677888888888887666


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF  270 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~  270 (318)
                      ... .++.|..+++.+.+..++...+...+..+|....-.
T Consensus       122 GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  122 GQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             ccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            666 899999999999999999999999888888655433

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.09  E-value=0.13  Score=34.05  Aligned_cols=34  Identities=35%  Similarity=0.571  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS  183 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  183 (318)
                      |.+..+..+...++.++.|.++||.++++.....
T Consensus        38 Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   38 GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            7888999999999999999999999998877654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.06  E-value=1.3  Score=40.08  Aligned_cols=116  Identities=16%  Similarity=0.070  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCc-------------cc--------chhHHHH
Q psy16658        159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVS-------------SI--------SFLPLLS  217 (318)
Q Consensus       159 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~~~~~~  217 (318)
                      +.++..++..++.++..++++..........+++++++..++..+..++.             ..        .|.....
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            45566778889999999999988888888888888888776554322111             10        0222222


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      ....-.-.....+-+.|....|....++..+-.++.+...+++..++..+..++.++
T Consensus       154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222112222223335667788999999999999999999999999999888888763

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.86  E-value=0.17  Score=44.69  Aligned_cols=56  Identities=20%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHhhccccccccchhhhhccCchh
Q psy16658         68 PVILAFCIPFIISWVLILFAK---------NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSI  123 (318)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~---------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~  123 (318)
                      |++.++.++..+|.++..++.         +.+.+.++..+.++|.|+.-|...++.+|-+++++
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            677888899999998866542         23578888999999999999999999999998773

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1237|consensus

Probab=92.57  E-value=2.1  Score=40.23  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhH--------------------
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAKNV--------------------   90 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~s~--------------------   90 (318)
                      ++.+.....-..+.+.-......+..++++|.| ||-+++.++.++..++..+..++...                    
T Consensus        68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~  147 (571)
T KOG1237|consen   68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP  147 (571)
T ss_pred             hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence            677777777777777777778889999999976 88889999999988886666554221                    


Q ss_pred             -----HHHHHHHHHHHhhccccccccchhhhhccCc
Q psy16658         91 -----LMLFAARFIAGVATGGLSAIIPMFIGEIAES  121 (318)
Q Consensus        91 -----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  121 (318)
                           ..+....-+..+|.|+.-|...++-+|-+++
T Consensus       148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~  183 (571)
T KOG1237|consen  148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDE  183 (571)
T ss_pred             chHHHHHHHHHHHHheeccCCCCCcchhhcccccCc
Confidence                 2455666778889999999999999999983

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.43  E-value=0.57  Score=41.63  Aligned_cols=132  Identities=15%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658        151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG  230 (318)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (318)
                      .....-.+...+..+...++.+|+..+.-...+..++.+++++..+.           .+.+.-++...+.....+.+=.
T Consensus        63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----------~~v~~~l~Gv~las~ssg~GE~  131 (402)
T PF02487_consen   63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-----------PSVWVRLLGVVLASLSSGLGEV  131 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-----------cchhHHHHHHHHHhhhhhhhHH
Confidence            45566666777778888899999886655555555666666665552           2334445555555555444432


Q ss_pred             ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHhheecc
Q psy16658        231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      ... .+ ...+|+.    ..+-..+....++.+|+...-.+.+ .|  .+..+.....+..+..+..++.++
T Consensus       132 tfL-~l-t~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  132 TFL-SL-THFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             HHH-HH-HHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222 23 2345542    3344444455566777766665655 44  455666655555444333343443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.33  E-value=2.5  Score=38.61  Aligned_cols=28  Identities=21%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhh
Q psy16658         90 VLMLFAARFIAGVATGGLSAIIPMFIGE  117 (318)
Q Consensus        90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~  117 (318)
                      +..+++..++||+-.|......+-++.+
T Consensus         2 ~~lL~~LY~lQGiP~GL~~gsiPflL~~   29 (544)
T PF13000_consen    2 IALLVLLYFLQGIPLGLAFGSIPFLLQS   29 (544)
T ss_pred             eeHHHHHHHHcCcccccccccchhhhcc
Confidence            3467788899999888877666666655

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=91.57  E-value=1.8  Score=40.22  Aligned_cols=51  Identities=22%  Similarity=0.353  Sum_probs=37.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHhh
Q psy16658        246 KGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       246 r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      -+...|-.+....+|+.+|..+.+.+.- ..|......+.+.+.++..++..
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~  194 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL  194 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4677888999999999999999888765 57765566666666555554443

>PRK03612 spermidine synthase; Provisional

Probab=90.85  E-value=4.7  Score=37.55  Aligned_cols=32  Identities=19%  Similarity=0.031  Sum_probs=27.8

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK   63 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr   63 (318)
                      +|-+..+.+.+.+++..+..+|+.+++++.++
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            67777888999999999999999999988744

>KOG3097|consensus

Probab=90.01  E-value=12  Score=32.42  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             HHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccC
Q psy16658         47 AIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAE  120 (318)
Q Consensus        47 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  120 (318)
                      ......++.+.+.+.+++|.|+++.++...+... +..-+-+.|+.++..-...|.+.+..+..--+++++.-.
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            4445566666779999999999999888877542 233344788999999999999999999888888877654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.95  E-value=2.7  Score=28.32  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=49.1

Q ss_pred             HhHHhHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHh
Q psy16658        133 SAIIPMFIGEIAESS-IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFY  197 (318)
Q Consensus       133 ~~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  197 (318)
                      ..++|...+|..-+. .-|++...+.++..+|.+...++.++.++++.+..+.+...+....+.+.
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555543322 23689999999999999999999999888888888888888888777763

Note that many members are hypothetical proteins.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=88.09  E-value=22  Score=32.89  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             ccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q psy16658        238 GELFA-PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIF  284 (318)
Q Consensus       238 ~~~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  284 (318)
                      .+.+| |+.+...+|-.+...++...+...+.+.+.++.||.....+.
T Consensus       308 k~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  308 KQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             HHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            44444 444577777777777776666668888889999987655543

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1237|consensus

Probab=87.82  E-value=4.8  Score=37.89  Aligned_cols=142  Identities=20%  Similarity=0.204  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCC---------Ccc--cchh-HHHHHHHHH
Q psy16658        156 VGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKD---------VSS--ISFL-PLLSVIFFI  222 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~-~~~~~~~~~  222 (318)
                      ..-........+++++|. +||-+++.++.++...+..++..........+.         ...  .... .+....+..
T Consensus        82 f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l  161 (571)
T KOG1237|consen   82 FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL  161 (571)
T ss_pred             HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence            334445566788899997 578888888888887776666554433321110         001  1111 111111111


Q ss_pred             H-HHHhcccccceeeeccccc---h-hhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHh
Q psy16658        223 V-MFSLGYGPIPWMMVGELFA---P-EVK--GSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFT  295 (318)
Q Consensus       223 ~-~~~~~~~~~~~~~~~~~~p---~-~~r--~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  295 (318)
                      . ....+.-+....+-+|.++   + +.+  ..-...+....+.|..+...+.-+.-|+.+|...|.+..+...++.++.
T Consensus       162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            1 1222333333366667776   2 222  3566777777888888888888888788889888888777666665554


Q ss_pred             he
Q psy16658        296 FV  297 (318)
Q Consensus       296 ~~  297 (318)
                      +.
T Consensus       242 ~~  243 (571)
T KOG1237|consen  242 LP  243 (571)
T ss_pred             Hc
Confidence            43

>KOG3574|consensus

Probab=81.56  E-value=19  Score=32.09  Aligned_cols=21  Identities=19%  Similarity=0.482  Sum_probs=15.1

Q ss_pred             hhHHHHHHHHHHHHhhccccc
Q psy16658         88 KNVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        88 ~s~~~l~~~r~l~G~~~g~~~  108 (318)
                      +++..++....+||+-.|...
T Consensus        31 ~~illLl~LYllQGiP~GL~~   51 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG   51 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh
Confidence            456667777788888777665

>KOG4332|consensus

Probab=80.86  E-value=9.8  Score=32.06  Aligned_cols=91  Identities=10%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhcchh--HHHHHHHHHHHHHHHHHHH----h---hHHHHHHHHHHHHhhcccccc
Q psy16658         39 ASLIGSLIAIGAIFGALPAGSIADKFGRKP--VILAFCIPFIISWVLILFA----K---NVLMLFAARFIAGVATGGLSA  109 (318)
Q Consensus        39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~~~~~~~~~~~~~~~~~~~----~---s~~~l~~~r~l~G~~~g~~~~  109 (318)
                      -|.+.+.++++..+++-+..++..|-..|-  .+.+..........+..+.    |   +...-+++.++.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            589999999999999999999988876653  3444444433333322221    1   222334555666677889999


Q ss_pred             ccchhhhhccCchhhhHHHH
Q psy16658        110 IIPMFIGEIAESSIRAGVAT  129 (318)
Q Consensus       110 ~~~~~i~~~~~~~~r~~~~~  129 (318)
                      ..+.+=+++.|++.|...+.
T Consensus       364 SimkmRsqyIPEearstimN  383 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMN  383 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhh
Confidence            99999999999999987665

>KOG1479|consensus

Probab=80.46  E-value=43  Score=30.01  Aligned_cols=56  Identities=11%  Similarity=-0.067  Sum_probs=31.9

Q ss_pred             ccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy16658        209 SISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT  265 (318)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~  265 (318)
                      +..++.+....+++...+-..+... .+..+..|++++-.+-.+....-..|-..|.
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m-~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~  396 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIM-MYAPKQVKPSEKEAAGNLMVFFLVGGLALGS  396 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhhee-hhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666666666666555444333 6777778888765554444444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		7e-22

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 97/174 (55%), Gaps = 13/174 (7%)
Query: 144 AESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMED 203
           A + I  +  IIVG++    T L+++ VDK GR+ L ++    MA+ +  LG  FY    
Sbjct: 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 368
Query: 204 GKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFI 263
           G        + LLS++F++  F++ +GP+ W+++ E+F   ++G A  IAVA  W++ + 
Sbjct: 369 G-------IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF 421
Query: 264 VTLCFVFLVKN------LGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQ 311
           V+  F  + KN        +  ++WI+  +  +  LF +  VPETKGKTL +++
Sbjct: 422 VSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 30  LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKN 89
           LN      Q+ +   L+  G     L  G I+D+ GR+PVIL     F+++ ++ +   +
Sbjct: 30  LNVREGAVQSVMGAYLLTYG--VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS 87

Query: 90  VLMLFAARFIAGVATG 105
           + +L AA  + G+ TG
Sbjct: 88  LTVLIAASAMQGMGTG 103

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 38  QASLIGSLIAIGAIFGALPAGSIADKF--GRKPVILAFCIPFIISWVLIL---FAKNVLM 92
           ++S    L     I G L  G ++DK   G +     F +  +    ++     A N  +
Sbjct: 289 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348

Query: 93  LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVA-----TGGLSAII--PMFIGEIAE 145
                 + G    G   +I +   E+A        A      G L   +     +G   +
Sbjct: 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408

Query: 146 SSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186
                   +++     +   L +V++    RR   LL + V
Sbjct: 409 FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.88
2xut_A	524	Proton/peptide symporter family protein; transport	99.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.37
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.33
2xut_A	524	Proton/peptide symporter family protein; transport	99.3
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.03
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.9

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6e-36  Score=271.97  Aligned_cols=309  Identities=29%  Similarity=0.524  Sum_probs=242.1

Q ss_pred             ccccccccccccccccccccccccccc-ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Q psy16658          2 LGAVTIGTGLAWTSPVLPILTSTTETS-VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIIS   80 (318)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~   80 (318)
                      ++.++.|++.+.++..+|.+.++++.. ..+.+.+..+.|++.+.+.+|..++++++|+++||+|||++++++.+++.++
T Consensus        19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~   98 (491)
T 4gc0_A           19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS   98 (491)
T ss_dssp             HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            456788999999999999888774321 1122345567899999999999999999999999999999999999999999


Q ss_pred             HHHHH------------------HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh------------
Q psy16658         81 WVLIL------------------FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG------------  130 (318)
Q Consensus        81 ~~~~~------------------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------------  130 (318)
                      +++++                  +++|++.++++|+++|++.|...+...++++|+.|+++|++..+.            
T Consensus        99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~  178 (491)
T 4gc0_A           99 GVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV  178 (491)
T ss_dssp             HHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence            99998                  478999999999999999999999999999999999999988770            


Q ss_pred             ------------------------hhHhHHhHHH---------------------HH-----------------Hhh---
Q psy16658        131 ------------------------GLSAIIPMFI---------------------GE-----------------IAE---  145 (318)
Q Consensus       131 ------------------------~~~~~~p~~~---------------------~~-----------------~~~---  145 (318)
                                              ......|.++                     +|                 ..+   
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  258 (491)
T 4gc0_A          179 YCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH  258 (491)
T ss_dssp             HHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHH
Confidence                                    0000011110                     00                 000   


Q ss_pred             -----cc--cc---------------------------------------------hHHHHHHHHHHHHHHHHHHHHhhc
Q psy16658        146 -----SS--IR---------------------------------------------GISAIIVGIVQFIMTALSVVLVDK  173 (318)
Q Consensus       146 -----~~--~~---------------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~  173 (318)
                           ++  .+                                             .....+.++...++.++.+++.||
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr  338 (491)
T 4gc0_A          259 SLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK  338 (491)
T ss_dssp             HHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence                 00  00                                             145566778888999999999999


Q ss_pred             cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHH
Q psy16658        174 AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIA  253 (318)
Q Consensus       174 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~  253 (318)
                      +|||+.+..+...+.++.+.+.......       ...+.......+...++..+..++.+.+.+|++|++.|+++.|+.
T Consensus       339 ~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~  411 (491)
T 4gc0_A          339 FGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA  411 (491)
T ss_dssp             HCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHH
T ss_pred             hcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence            9999999988888887777666543321       223344555566666777778888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------hchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcCC
Q psy16658        254 VALNWISAFIVTLCFVFLVKN------LGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGG  317 (318)
Q Consensus       254 ~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (318)
                      +..+++++.+++.+.+.+.+.      .+....+++++++++++.++.++++||||+++.||.|+.+|++
T Consensus       412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~  481 (491)
T 4gc0_A          412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE  481 (491)
T ss_dssp             HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence            999999999999888776543      3455678889999999988888899999999999998877653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=4.6e-29  Score=223.96  Aligned_cols=277  Identities=14%  Similarity=0.102  Sum_probs=214.4

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+..+++.....+.+|.+.++       + .+..+.|++.+.+.++..++.+++|+++||+|||+++.++.++.+++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~  108 (451)
T 1pw4_A           37 YAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF  108 (451)
T ss_dssp             HHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            344556667777888988888       8 99999999999999999999999999999999999999999999999999


Q ss_pred             HHH----HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH--------------------
Q psy16658         84 ILF----AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS--------------------  133 (318)
Q Consensus        84 ~~~----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~--------------------  133 (318)
                      +++    +++++.+++.|+++|++.+...+...+++.|++|+|+|+++++      .++.                    
T Consensus       109 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~  188 (451)
T 1pw4_A          109 MGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA  188 (451)
T ss_dssp             HHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            999    9999999999999999999999999999999999999999988      0000                    


Q ss_pred             ----hHHh---HH---H--HHHhh------------------------c------------ccc----------------
Q psy16658        134 ----AIIP---MF---I--GEIAE------------------------S------------SIR----------------  149 (318)
Q Consensus       134 ----~~~p---~~---~--~~~~~------------------------~------------~~~----------------  149 (318)
                          ....   .+   .  +|..+                        +            +++                
T Consensus       189 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (451)
T 1pw4_A          189 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR  268 (451)
T ss_dssp             THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHH
Confidence                0000   00   0  11000                        0            001                


Q ss_pred             ----------------------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhhhhhHHHH-HHHHHHHHhhhhccCC
Q psy16658        150 ----------------------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLLLSDFVMA-LCLGVLGFYFYMMEDG  204 (318)
Q Consensus       150 ----------------------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  204 (318)
                                            |.......++.+++.++.+++.||+  +||+.+..+..+.. ++..++...       
T Consensus       269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  341 (451)
T 1pw4_A          269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-------  341 (451)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-------
Confidence                                  4777888899999999999999999  99988877665554 444333221       


Q ss_pred             CCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHH
Q psy16658        205 KDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLGSAATFWI  283 (318)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~  283 (318)
                        +....+.......+.+.+...... ....+..|..|+++|+++.|+.+...++ +..++|.+.|.+.|+.|++..+++
T Consensus       342 --~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  418 (451)
T 1pw4_A          342 --PAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  418 (451)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             --cccCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence              011233444444444444444333 3337788999999999999999999999 999999999999999999888888


Q ss_pred             HHHHHHHHHHHhhee
Q psy16658        284 FSVICFVGTLFTFVL  298 (318)
Q Consensus       284 ~~~~~~~~~~~~~~~  298 (318)
                      .+++.+++.++.+..
T Consensus       419 ~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          419 MIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777776665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=1.3e-27  Score=213.73  Aligned_cols=266  Identities=17%  Similarity=0.153  Sum_probs=206.7

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+..+++.+...+.+|.+.++       +|.++.+.|++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~  107 (438)
T 3o7q_A           35 FFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL  107 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            345566667788889998888       8999999999999999999999999999999999999999999999999999


Q ss_pred             H---HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------hhhH----------
Q psy16658         84 I---LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------GGLS----------  133 (318)
Q Consensus        84 ~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------~~~~----------  133 (318)
                      +   +++++++.+++.|+++|++.+...+...+++.|++|+|+|+++++                 ....          
T Consensus       108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  187 (438)
T 3o7q_A          108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD  187 (438)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred             HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            9   888999999999999999999999999999999999999998877                 0000          


Q ss_pred             --------------------hHHhHHH-----------------HHHhhc-----c-------------cc---------
Q psy16658        134 --------------------AIIPMFI-----------------GEIAES-----S-------------IR---------  149 (318)
Q Consensus       134 --------------------~~~p~~~-----------------~~~~~~-----~-------------~~---------  149 (318)
                                          .-.+...                 +|.+++     +             ++         
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T 3o7q_A          188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQ  267 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHH
Confidence                                0011111                 100000     0             00         


Q ss_pred             ------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhh
Q psy16658        150 ------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFY  199 (318)
Q Consensus       150 ------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  199 (318)
                                                    |.......++..+++++.+++.||++||+.+..+..+..++.+++...  
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--  345 (438)
T 3o7q_A          268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--  345 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--
Confidence                                          466777788899999999999999999999988887777776655542  


Q ss_pred             hccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hh
Q psy16658        200 MMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SA  278 (318)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~  278 (318)
                               ... .......+.+.+.+... +..+.+..|.+|++ ++++.++.. ...++..++|.+.|.+.|+.| ++
T Consensus       346 ---------~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~  412 (438)
T 3o7q_A          346 ---------GGH-VGLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP  412 (438)
T ss_dssp             ---------CHH-HHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred             ---------CCc-HHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence                     111 22333444555544443 44447777888877 888888877 778999999999999999999 88


Q ss_pred             hHHHHHHHHHHHH
Q psy16658        279 ATFWIFSVICFVG  291 (318)
Q Consensus       279 ~~~~~~~~~~~~~  291 (318)
                      ..+.+.+...++.
T Consensus       413 ~~~~~~~~~~~~~  425 (438)
T 3o7q_A          413 TAELIPALCFAVI  425 (438)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8887665544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.93  E-value=1.6e-25  Score=203.34  Aligned_cols=272  Identities=12%  Similarity=0.095  Sum_probs=194.7

Q ss_pred             cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q psy16658         30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLS  108 (318)
Q Consensus        30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~  108 (318)
                      +|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.+++.|+++|++.+...
T Consensus        47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            4589999999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhccCchh--hhHHHH------hhhHhHHhHHH-------------------------------H--------
Q psy16658        109 AIIPMFIGEIAESSI--RAGVAT------GGLSAIIPMFI-------------------------------G--------  141 (318)
Q Consensus       109 ~~~~~~i~~~~~~~~--r~~~~~------~~~~~~~p~~~-------------------------------~--------  141 (318)
                      +...+++.|++|+++  |+.+++      .++..+.|.+.                               +        
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999988  555554      00001111100                               0        


Q ss_pred             ---------HHhh----------------------------------------------------------cccc-----
Q psy16658        142 ---------EIAE----------------------------------------------------------SSIR-----  149 (318)
Q Consensus       142 ---------~~~~----------------------------------------------------------~~~~-----  149 (318)
                               |.++                                                          +.++     
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence                     0000                                                          0000     


Q ss_pred             -----------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhh-----hhhHHHHH
Q psy16658        150 -----------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLL-----LSDFVMAL  189 (318)
Q Consensus       150 -----------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~  189 (318)
                                                         +.......+...++.++.+++.||++||+...     .+..+.++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~  366 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL  366 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence                                               35566677788888999999999999987655     55555555


Q ss_pred             HHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16658        190 CLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV  269 (318)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g  269 (318)
                      +..++..........  .....+.......+.+.+.....+. .+.+..|..|++.|+++.|+.+...++|..++|.+.+
T Consensus       367 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~  443 (491)
T 4aps_A          367 SFLLMAIPGALYGTS--GKVSPLWLVGSWALVILGEMLISPV-GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT  443 (491)
T ss_dssp             HHTTTHHHHHHCCCC--TTCCTHHHHHHHHHHHHHHHTTTTH-HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhcCCC--CCccHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444432221111  1223444455555555555554444 4488899999999999999999999999999999988


Q ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCC
Q psy16658        270 FLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK  305 (318)
Q Consensus       270 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (318)
                      .+.+. ++...+...+.++++..++.+...++.+++
T Consensus       444 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          444 LYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             GGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77654 666778887777777777666655554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=7.8e-26  Score=198.35  Aligned_cols=262  Identities=14%  Similarity=0.092  Sum_probs=193.5

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+..+++.+...+.+|.+.++       +|.++++.+++.+.+.++..++.+++|+++||+||||++..+..+..++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            9 VAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            445566777788889998888       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------------
Q psy16658         84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-----------------  140 (318)
Q Consensus        84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-----------------  140 (318)
                      ..++++++.+++.|+++|++.+...+...+++.|++|+|+|++.++      .+...+.|.+.                 
T Consensus        82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A           82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888      11111111111                 


Q ss_pred             --------------HHHhh--cc-------------cc--------------------------------------hHHH
Q psy16658        141 --------------GEIAE--SS-------------IR--------------------------------------GISA  153 (318)
Q Consensus       141 --------------~~~~~--~~-------------~~--------------------------------------g~~~  153 (318)
                                    +|.++  ++             ++                                      |...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  241 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF  241 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence                          11100  00             00                                      4666


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH-HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658        154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV-MALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI  232 (318)
Q Consensus       154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
                      ....++..++.++.+++.||.+++  ...+... ...+...+......       ..+.+.......+.+.+.+...+..
T Consensus       242 ~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~  312 (375)
T 2gfp_A          242 ILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG-------VMNVWTLLVPAALFFFGAGMLFPLA  312 (375)
T ss_dssp             HTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH-------HHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc-------cccHHHHHHHHHHHHHHHHHhhHHH
Confidence            777788888888888888887762  2222222 11111111110000       0123334445555666665544444


Q ss_pred             ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q psy16658        233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWI  283 (318)
Q Consensus       233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  283 (318)
                      . .+..|..| ++|+++.|+.+...++|..++|.+.+.+.++.+++..+..
T Consensus       313 ~-~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          313 T-SGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             H-HHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             H-HHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            4 88889888 7899999999999999999999999999888777655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.88  E-value=4.9e-23  Score=183.29  Aligned_cols=280  Identities=9%  Similarity=0.125  Sum_probs=178.3

Q ss_pred             ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH---HHHH
Q psy16658          9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW---VLIL   85 (318)
Q Consensus         9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~   85 (318)
                      ...+...+.+|.+.++.      +|.++.+.|++.+.+.++..++++++|+++||+||||+++++..+.++..   ....
T Consensus        21 ~~~~~~~~~~~~~l~~~------~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T 2cfq_A           21 FIMGAYFPFFPIWLHDI------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHTTTHHHHHHTT------TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567777765442      89999999999999999999999999999999999999998887765532   1122


Q ss_pred             HHhhHH-HHHHHHHHHHhhccccccccchhhhhccCch--hhhHHHH------hhhHhHHhHHH----------------
Q psy16658         86 FAKNVL-MLFAARFIAGVATGGLSAIIPMFIGEIAESS--IRAGVAT------GGLSAIIPMFI----------------  140 (318)
Q Consensus        86 ~~~s~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~------~~~~~~~p~~~----------------  140 (318)
                      +++... .+...+.+.|++.+...+.......++.+++  +|+...+      .++..+.|.+.                
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~  174 (417)
T 2cfq_A           95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS  174 (417)
T ss_dssp             HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            332221 2345566666666655555555555555442  2332222      11111111111                


Q ss_pred             --------------HHHh------h----c--c-----------cc----------------------------------
Q psy16658        141 --------------GEIA------E----S--S-----------IR----------------------------------  149 (318)
Q Consensus       141 --------------~~~~------~----~--~-----------~~----------------------------------  149 (318)
                                    +|..      +    +  +           ++                                  
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (417)
T 2cfq_A          175 GCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG  254 (417)
T ss_dssp             TTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH
T ss_pred             HHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                          1110      0    0  0           00                                  


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHH
Q psy16658        150 -------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFI  222 (318)
Q Consensus       150 -------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (318)
                             |....+..+..+++.++.+++.||++||+.+..+....++....+...           ...+.......+.+
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~  323 (417)
T 2cfq_A          255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----------TSALEVVILKTLHM  323 (417)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----------CSHHHHHHHTTHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH
Confidence                   122233344566778899999999999998887776666654444321           11222233322333


Q ss_pred             HHHHhcccccceeeeccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        223 VMFSLGYGPIPWMMVGELFAPEVKGSATGIA-VALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      ......... .+.+..|.+|++.|+++.+.. +....+|+.++|.+.|.+.|+.|++..|.+.+++++++.++.+...+|
T Consensus       324 ~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          324 FEVPFLLVG-CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            332222222 237888999999999999994 888889999999999999998888888888888877777766665666


Q ss_pred             CCCCC
Q psy16658        302 TKGKT  306 (318)
Q Consensus       302 ~~~~~  306 (318)
                      +++.+
T Consensus       403 ~~~~~  407 (417)
T 2cfq_A          403 PGPLS  407 (417)
T ss_dssp             SCTTC
T ss_pred             CCchH
Confidence            55444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.86  E-value=6.4e-22  Score=181.05  Aligned_cols=94  Identities=21%  Similarity=0.400  Sum_probs=90.6

Q ss_pred             CCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhhcccccccc
Q psy16658         34 VDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAK-NVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        34 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      .+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++.++++ +++.+++.|+++|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            9999999999999999999999999999999 999999999999999999999999 99999999999999999999999


Q ss_pred             chhhhhccCchhhhHH
Q psy16658        112 PMFIGEIAESSIRAGV  127 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~  127 (318)
                      .+++.|++|+++|++.
T Consensus       131 ~~~~~~~~~~~~r~~~  146 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLA  146 (524)
T ss_dssp             HHHHHHTCSTTTTTHH
T ss_pred             HHHHHHHcCccchHHH
Confidence            9999999999999643

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.48  E-value=1.9e-13  Score=122.13  Aligned_cols=145  Identities=14%  Similarity=0.198  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+.++.+++.++..+....       ..+.+..++...+.+.+.+...
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~G~~~~~~~  137 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------TSSIAVMFVLLFLCGWFQGMGW  137 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-------HSSSSHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-------cccHHHHHHHHHHHHHHhhhcc
Confidence            377888899999999999999999999999999998888888777652110       0224455566666666666555


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPET  302 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                      .... +++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |+..+++.+...++..++.++..||+
T Consensus       138 ~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~  210 (451)
T 1pw4_A          138 PPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  210 (451)
T ss_dssp             HHHH-HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             chHH-HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            5555 888999999999999999999999999999999999999998 99999998888777666665555553

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=1.3e-12  Score=118.13  Aligned_cols=136  Identities=18%  Similarity=0.193  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      |+......++..++.++.|+++|| +|||+.+..+..+..++.++....           .+.+...+...+.+.+.+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~  125 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----------FGASALFGSIILIIIGTGFL  125 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----------CSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHhc
Confidence            478888999999999999999999 899999999988888887776552           33445556666666666655


Q ss_pred             ccccceeeeccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        229 YGPIPWMMVGELFAPEV--KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      .+... +++.|.+|+++  |+++.+..+...++|..++|.+.+.+.++.||+..|++.+....+..+....
T Consensus       126 ~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          126 KPNVS-TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHH-HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHH-HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            54444 88899999988  7788888999999999999999999999999999998877766665555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.37  E-value=5e-13  Score=116.66  Aligned_cols=142  Identities=15%  Similarity=0.043  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |.......+...++.++.|+++||+|||+.+..+.....++.......           .+.+.......+.+.+.+...
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~~~~~  106 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----------SSLTVLIAASAMQGMGTGVGG  106 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHhhh
Confidence            478888899999999999999999999999999988888888777663           223444555555555555444


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK  303 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (318)
                      .... .++.|..|+++|+++++..+....+|..++|.+.+.+.++.||+..+.+.+....+..+......||++
T Consensus       107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (375)
T 2gfp_A          107 VMAR-TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR  179 (375)
T ss_dssp             HHHH-HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred             hhHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence            4344 788899999999999999999999999999999999999889999998888877776665555566654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.33  E-value=4.4e-12  Score=112.85  Aligned_cols=138  Identities=15%  Similarity=0.078  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+..+.+++.++......        ..+.+..++...+.+.+.+...
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~l~G~~~~~~~  135 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--------IMNYTLFLVGLFIIAAGLGCLE  135 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--------cccHHHHHHHHHHHHhhHHHhh
Confidence            57888899999999999999999999999999999888888877732111        1334555666667777666655


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------------------------hhhHHHH
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV-KNLG-------------------------SAATFWI  283 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g-------------------------~~~~~~~  283 (318)
                      .... +++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+                         |++.+.+
T Consensus       136 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  214 (438)
T 3o7q_A          136 TAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI  214 (438)
T ss_dssp             HHHH-HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHH-HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence            5555 88899999999999999999999999999999999998 4443                         7788877


Q ss_pred             HHHHHHHHHHHhh
Q psy16658        284 FSVICFVGTLFTF  296 (318)
Q Consensus       284 ~~~~~~~~~~~~~  296 (318)
                      .+....+..++..
T Consensus       215 ~~~~~~~~~~~~~  227 (438)
T 3o7q_A          215 IVAIVLLVALLIM  227 (438)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.30  E-value=2e-11  Score=111.40  Aligned_cols=137  Identities=18%  Similarity=0.184  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc-CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKA-GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG  228 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (318)
                      |+......++..++.++.|+++||+ |||+.+..+..+..++.++....          ..+.+.......+.+.+.+..
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~~  126 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----------EHSVQGFYTGLFLIALGSGGI  126 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----------SSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhcccc
Confidence            3677888889999999999999999 99999999888888877776652          113444555556666665554


Q ss_pred             ccccceeeeccccchhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658        229 YGPIPWMMVGELFAPEVKGSATGI---AVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV  297 (318)
Q Consensus       229 ~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      .+... +++.|.+|+++|++..+.   .+...++|..++|.+.+.+.++.||+..|.+.+...++..+....
T Consensus       127 ~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          127 KPLVS-SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHH-HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chhHH-HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 888999999999776666   888999999999999999999899999998887776665554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.03  E-value=4e-09  Score=95.19  Aligned_cols=124  Identities=15%  Similarity=0.056  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCC-------CCcccchhHHHHHHHHH
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK-------DVSSISFLPLLSVIFFI  222 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  222 (318)
                      |+......++..+|.++.|+++||+|||+.+..+.++..++.++.++.........       ....+.+..++.-++.+
T Consensus        58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G  137 (491)
T 4gc0_A           58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG  137 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence            47777888999999999999999999999999998888888777764321110000       00233445566666666


Q ss_pred             HHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658        223 VMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN  274 (318)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~  274 (318)
                      .+.+......+ .++.|..|+++|++..+..+.....|...++.+.....+.
T Consensus       138 ~g~G~~~~~~~-~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          138 IGVGLASMLSP-MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHH-HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence            66666555555 8999999999999999999999999988888777666543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.90  E-value=1.2e-09  Score=96.73  Aligned_cols=125  Identities=12%  Similarity=0.031  Sum_probs=102.3

Q ss_pred             CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchh
Q psy16658         35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMF  114 (318)
Q Consensus        35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~  114 (318)
                      +..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788888888888999999999999999999998888888877777777888888888888888877777777889


Q ss_pred             hhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehh
Q psy16658        115 IGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILL  180 (318)
Q Consensus       115 i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~  180 (318)
                      +.|.+|++.|++..+                     . ......+++.++..+.|++.|+.|....+
T Consensus       337 ~~~~~p~~~~g~~~g---------------------~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f  382 (417)
T 2cfq_A          337 ITSQFEVRFSATIYL---------------------VCFCFFKQLAMIFMSVLAGNMYESIGFQGAY  382 (417)
T ss_dssp             HHHHSCHHHHHHHHH---------------------HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred             HHHHCCHHHHHHHHH---------------------HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence            999999999998777                     4 24556688889999999999987644333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.004

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 27/274 (9%), Positives = 64/274 (23%), Gaps = 8/274 (2%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILA----FCIPFIISWVLILFAKN 89
             RG      S I+I   F     GS++D+   +  + A         +    +     +
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 90  VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLS----AIIPMFIGEIAE 145
           + ++F   F+ G   G         +        R G+ +              +  +  
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 146 SSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK 205
            +        + +  F    +++                 +          Y    E   
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 206 DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT 265
               I    +L       +                ++P         A+  +  + F+  
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295

Query: 266 LCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV 299
              +      G  +           G  F  ++ 
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.33
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.09

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.6e-29  Score=220.58  Aligned_cols=262  Identities=15%  Similarity=0.128  Sum_probs=192.7

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhhcccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK----NVLMLFAARFIAGVATGGL  107 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~  107 (318)
                      +|+|.+|.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++    +++.+++.|++.|++.+..
T Consensus        54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  133 (447)
T d1pw4a_          54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG  133 (447)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence            799999999999999999999999999999999999999999999999999988764    6788999999999999999


Q ss_pred             ccccchhhhhccCchhhhHHHH------hhhHhHHhHHH--------------------------------HH-------
Q psy16658        108 SAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI--------------------------------GE-------  142 (318)
Q Consensus       108 ~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~--------------------------------~~-------  142 (318)
                      .+...+++.|++|+|+|+++++      .++..+.|.+.                                ++       
T Consensus       134 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (447)
T d1pw4a_         134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL  213 (447)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC
T ss_pred             hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc
Confidence            9999999999999999999988      11111111111                                00       


Q ss_pred             -------------Hhhc--c--------------cc--------------------------------------hHHHHH
Q psy16658        143 -------------IAES--S--------------IR--------------------------------------GISAII  155 (318)
Q Consensus       143 -------------~~~~--~--------------~~--------------------------------------g~~~~~  155 (318)
                                   .+++  +              ++                                      +....+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (447)
T d1pw4a_         214 PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL  293 (447)
T ss_dssp             CSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHH
T ss_pred             chhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhc
Confidence                         0000  0              00                                      467778


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658        156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM  235 (318)
Q Consensus       156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (318)
                      ..+..+++.++.|++.||.+|++.......................      ..+.+.......+.+..... ..+....
T Consensus       294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~  366 (447)
T d1pw4a_         294 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP------AGNPTVDMICMIVIGFLIYG-PVMLIGL  366 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC------TTCHHHHHHHHHHHHHHHTH-HHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            8888999999999999999987655444333333222222211111      12233344444444443333 3334447


Q ss_pred             eeccccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658        236 MVGELFAPEVKGSATGIAVALNWIS-AFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP  300 (318)
Q Consensus       236 ~~~~~~p~~~r~~~~g~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (318)
                      +..|.+|++.|+++.|+.+...+++ ...+|.+.|.+.|+.|++..+.+.++..+++.++.+...+
T Consensus       367 ~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         367 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999998875 5678999999999999988888887777776666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.9e-26  Score=197.39  Aligned_cols=288  Identities=10%  Similarity=0.102  Sum_probs=205.2

Q ss_pred             cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658          4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL   83 (318)
Q Consensus         4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~   83 (318)
                      .+...+..+...|.+|.+.+|.      +|.|++++|++.+++.++..++++++|+++||+||||+++++..+..++...
T Consensus        16 ~f~~~~~~~~~~~~l~~~l~~~------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   89 (417)
T d1pv7a_          16 FFFYFFIMGAYFPFFPIWLHDI------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            3455566677788888765543      8999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHhhHHHH----HHHHHHHHhhccccccccchhhhhccCchhhhH--HHH------hhhHhHHhHHH-----------
Q psy16658         84 ILFAKNVLML----FAARFIAGVATGGLSAIIPMFIGEIAESSIRAG--VAT------GGLSAIIPMFI-----------  140 (318)
Q Consensus        84 ~~~~~s~~~l----~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~--~~~------~~~~~~~p~~~-----------  140 (318)
                      ..+.++....    +..+.+.+.+.+...........+..+++++.+  ..+      .......|.+.           
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  169 (417)
T d1pv7a_          90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV  169 (417)
T ss_dssp             HHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccccccc
Confidence            8887766544    344555555555555554444444443332221  111      11111111111           


Q ss_pred             -----------------------------HHHhhcccc------------------------------------------
Q psy16658        141 -----------------------------GEIAESSIR------------------------------------------  149 (318)
Q Consensus       141 -----------------------------~~~~~~~~~------------------------------------------  149 (318)
                                                   ++.++++++                                          
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (417)
T d1pv7a_         170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS  249 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccc
Confidence                                         000000000                                          


Q ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658        150 ------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS  217 (318)
Q Consensus       150 ------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (318)
                                  +.......+...++..+.+++.||.++|+.+..+..+..++...+...           .+.+.....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~  318 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----------TSALEVVIL  318 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----------CCHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----------cccchhhHH
Confidence                        356667778888899999999999999999998888887777766652           334555556


Q ss_pred             HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658        218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAV-ALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF  296 (318)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  296 (318)
                      ..+.+.+.+....+.. .+..|.+|++.|+++.|... ....+|..++|.+.|.+.|+.|++..+++.+.+.++..++..
T Consensus       319 ~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         319 KTLHMFEVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665554444 78899999999999999865 456789999999999999999999999998888888888777


Q ss_pred             eeccCCCCCCHHH
Q psy16658        297 VLVPETKGKTLNQ  309 (318)
Q Consensus       297 ~~~~~~~~~~~~~  309 (318)
                      +.++++++.+.++
T Consensus       398 ~~l~~~~~~~~~r  410 (417)
T d1pv7a_         398 FTLSGPGPLSLLR  410 (417)
T ss_dssp             HHSCCSSCTTHHH
T ss_pred             HhhcCCCccchhH
Confidence            7777766666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.2e-12  Score=112.62  Aligned_cols=144  Identities=13%  Similarity=0.188  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658        150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY  229 (318)
Q Consensus       150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (318)
                      |+......++..++.++.|+++||+|||+.+..+.++..++.++........       .+.+...+...+.+.+.+...
T Consensus        62 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~  134 (447)
T d1pw4a_          62 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGW  134 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-------hhHHHHHHHHHHHHHhhhhhh
Confidence            5888889999999999999999999999999999888888877776532221       223444555566666665555


Q ss_pred             cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHhheeccC
Q psy16658        230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-GSAATFWIFSVICFVGTLFTFVLVPE  301 (318)
Q Consensus       230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (318)
                      .+.. .++.|.+|+++|++++|+.+....+|..++|.+.+.+.+.. +|+..+++.+....+..++.+...++
T Consensus       135 ~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  206 (447)
T d1pw4a_         135 PPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD  206 (447)
T ss_dssp             HHHH-HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHH-HHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence            5555 78889999999999999999999999999999988887765 68888888777777666666555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=8.7e-11  Score=100.54  Aligned_cols=132  Identities=12%  Similarity=0.032  Sum_probs=116.1

Q ss_pred             cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658         32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII  111 (318)
Q Consensus        32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  111 (318)
                      .+.+....+...+...++..++..+.+++.||+|+|+.+..+..+..++.+...+.++.+.+++..++.|++.+...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            45566677888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCCeehhhhhh
Q psy16658        112 PMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGRRILLLLSD  184 (318)
Q Consensus       112 ~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  184 (318)
                      .+++.|.+|+|+|++..+                     ... ....++..++.++.|++.|++|.+.......
T Consensus       334 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~  386 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYL---------------------VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHH---------------------HHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHCCHhHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            999999999999998887                     433 3456788899999999999999776655443