Psyllid ID: psy16673
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 373 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PR73 | 199 | GTP-binding protein Di-Ra | yes | N/A | 0.222 | 0.417 | 0.452 | 9e-13 | |
| Q95KD9 | 199 | GTP-binding protein Di-Ra | N/A | N/A | 0.222 | 0.417 | 0.452 | 1e-12 | |
| Q5R6S2 | 199 | GTP-binding protein Di-Ra | yes | N/A | 0.222 | 0.417 | 0.452 | 1e-12 | |
| Q96HU8 | 199 | GTP-binding protein Di-Ra | yes | N/A | 0.222 | 0.417 | 0.452 | 2e-12 | |
| P63033 | 266 | GTP-binding protein Rhes | no | N/A | 0.455 | 0.639 | 0.294 | 6e-11 | |
| P63032 | 266 | GTP-binding protein Rhes | no | N/A | 0.455 | 0.639 | 0.294 | 6e-11 | |
| Q91Z61 | 198 | GTP-binding protein Di-Ra | no | N/A | 0.356 | 0.671 | 0.320 | 4e-10 | |
| Q96D21 | 266 | GTP-binding protein Rhes | no | N/A | 0.281 | 0.394 | 0.371 | 5e-10 | |
| P01119 | 309 | Ras-like protein 1 OS=Sac | yes | N/A | 0.217 | 0.262 | 0.435 | 6e-10 | |
| O95057 | 198 | GTP-binding protein Di-Ra | no | N/A | 0.356 | 0.671 | 0.307 | 9e-10 |
| >sp|Q5PR73|DIRA2_MOUSE GTP-binding protein Di-Ras2 OS=Mus musculus GN=Diras2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S +R V + + L
Sbjct: 117 MLVGNKCD-ESPNREVQSSEAEAL 139
|
Displays low GTPase activity and exist predominantly in the GTP-bound form. Mus musculus (taxid: 10090) |
| >sp|Q95KD9|DIRA2_MACFA GTP-binding protein Di-Ras2 OS=Macaca fascicularis GN=DIRAS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDMESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S R V + + L
Sbjct: 117 MLVGNKCD-ESPSREVQSSEAEAL 139
|
Displays low GTPase activity and exist predominantly in the GTP-bound form. Macaca fascicularis (taxid: 9541) |
| >sp|Q5R6S2|DIRA2_PONAB GTP-binding protein Di-Ras2 OS=Pongo abelii GN=DIRAS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S R V + + L
Sbjct: 117 MLVGNKCD-ESPSREVQSSEAEAL 139
|
Displays low GTPase activity and exist predominantly in the GTP-bound form. Pongo abelii (taxid: 9601) |
| >sp|Q96HU8|DIRA2_HUMAN GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S R V + + L
Sbjct: 117 MLVGNKCD-ESPSREVQSSEAEAL 139
|
Displays low GTPase activity and exist predominantly in the GTP-bound form. Homo sapiens (taxid: 9606) |
| >sp|P63033|RHES_RAT GTP-binding protein Rhes OS=Rattus norvegicus GN=Rasd2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 128 LEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC 187
+ED +Y + +DILDT G+ FPAMRRLSI T F+LV+S ESF VK
Sbjct: 52 IEDFHRKVYNIHGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDSRESFDEVKR 111
Query: 188 YFEEIRE-------QRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDIL----DTCGDLQF 236
++I E + ++ E+P+V+ GNK+D + R V + ++L + C +
Sbjct: 112 LQKQILEVKSCLKNKTKEAAELPMVICGNKNDHSELCRQVPAMEAELLVSGDENCAYFEV 171
Query: 237 PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP---AMRRLSIATAH 293
A + ++ F +++S L S + +I Q D P MRR +A A+
Sbjct: 172 SAKKNTNV--NEMFYVLFSMAKLPHEMSPALH-HKISVQYGDAFHPRPFCMRRTKVAGAY 228
Query: 294 AFLLVYS 300
+ ++
Sbjct: 229 GMVSPFA 235
|
GTPase signaling protein that binds to and hydrolyzes GTP. Regulates signaling pathways involving G-proteins-coupled receptor and heterotrimeric proteins such as GNB1, GNB2 and GNB3. May be involved in selected striatal competencies, mainly locomotor activity and motor coordination. Rattus norvegicus (taxid: 10116) |
| >sp|P63032|RHES_MOUSE GTP-binding protein Rhes OS=Mus musculus GN=Rasd2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 128 LEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC 187
+ED +Y + +DILDT G+ FPAMRRLSI T F+LV+S ESF VK
Sbjct: 52 IEDFHRKVYNIHGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDSRESFDEVKR 111
Query: 188 YFEEIRE-------QRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDIL----DTCGDLQF 236
++I E + ++ E+P+V+ GNK+D + R V + ++L + C +
Sbjct: 112 LQKQILEVKSCLKNKTKEAAELPMVICGNKNDHSELCRQVPAMEAELLVSGDENCAYFEV 171
Query: 237 PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP---AMRRLSIATAH 293
A + ++ F +++S L S + +I Q D P MRR +A A+
Sbjct: 172 SAKKNTNV--NEMFYVLFSMAKLPHEMSPALH-HKISVQYGDAFHPRPFCMRRTKVAGAY 228
Query: 294 AFLLVYS 300
+ ++
Sbjct: 229 GMVSPFA 235
|
GTPase signaling protein that binds to and hydrolyzes GTP. Regulates signaling pathways involving G-proteins-coupled receptor and heterotrimeric proteins such as GNB1, GNB2 and GNB3. May be involved in selected striatal competencies, mainly locomotor activity and motor coordination. Mus musculus (taxid: 10090) |
| >sp|Q91Z61|DIRA1_MOUSE GTP-binding protein Di-Ras1 OS=Mus musculus GN=Diras1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPA 283
+ I DT G QFPAM+RLSI+ HAF+LV+S T +S + ++ I + + + P
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLDELSPIYKLIVQIKGSVEDIPI 116
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
M + C E+ + V + Q +E SAK NYN+KE+F+
Sbjct: 117 M-------------LVGNKCDETQREVHTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 163
Query: 344 FLTL----SQILTTNGDENSLKRRSSAYVNKGK 372
LTL S L+ +G +S ++R+ KGK
Sbjct: 164 LLTLETRRSVSLSVDGKRSSKQKRADRI--KGK 194
|
Displays low GTPase activity and exist predominantly in the GTP-bound form. Mus musculus (taxid: 10090) |
| >sp|Q96D21|RHES_HUMAN GTP-binding protein Rhes OS=Homo sapiens GN=RASD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 128 LEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC 187
+ED +Y + +DILDT G+ FPAMRRLSI T F+LV+S ESF VK
Sbjct: 52 IEDFHRKVYNIRGDMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKR 111
Query: 188 YFEEIRE-------QRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGD 233
++I E + ++ E+P+V+ GNK+D R V + ++L GD
Sbjct: 112 LQKQILEVKSCLKNKTKEAAELPMVICGNKNDHGELCRQVPTTEAELL-VSGD 163
|
GTPase signaling protein that binds to and hydrolyzes GTP. Regulates signaling pathways involving G-proteins-coupled receptor and heterotrimeric proteins such as GNB1, GNB2 and GNB3. May be involved in selected striatal competencies, mainly locomotor activity and motor coordination. Homo sapiens (taxid: 9606) |
| >sp|P01119|RAS1_YEAST Ras-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDF 199
K+ +DILDT G ++ AMR + T FLLVYS T SF + Y+++I QR +D
Sbjct: 56 KVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQI--QRVKDS 113
Query: 200 QEIPIVVAGNKSDMTSHHRAVHLED 224
IP+VV GNK D+ + R V ED
Sbjct: 114 DYIPVVVVGNKLDL-ENERQVSYED 137
|
The S.cerevisiae Ras proteins modulate the activity of the adenylate cyclase catalytic subunit and therefore affect the biosynthesis of cyclic-AMP. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O95057|DIRA1_HUMAN GTP-binding protein Di-Ras1 OS=Homo sapiens GN=DIRAS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPA 283
+ I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + + P
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 116
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
M + C E+ + V + Q +E SAK NYN+KE+F+
Sbjct: 117 M-------------LVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 163
Query: 344 FLTL----SQILTTNGDENSLKRRSSAYVNKGK 372
LTL + L +G + ++R+ KGK
Sbjct: 164 LLTLETRRNMSLNIDGKRSGKQKRTDRV--KGK 194
|
Displays low GTPase activity and exist predominantly in the GTP-bound form. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 373 | ||||||
| 270004334 | 262 | hypothetical protein TcasGA2_TC003668 [T | 0.375 | 0.534 | 0.516 | 9e-31 | |
| 189235554 | 255 | PREDICTED: similar to AGAP005248-PA [Tri | 0.372 | 0.545 | 0.520 | 1e-30 | |
| 157116795 | 148 | ras GTPase, putative [Aedes aegypti] gi| | 0.372 | 0.939 | 0.5 | 4e-30 | |
| 307185290 | 267 | GTP-binding protein Di-Ras2 [Camponotus | 0.364 | 0.509 | 0.506 | 5e-30 | |
| 380012409 | 273 | PREDICTED: GTP-binding protein Di-Ras2-l | 0.364 | 0.498 | 0.493 | 8e-30 | |
| 328787959 | 273 | PREDICTED: GTP-binding protein Di-Ras2-l | 0.364 | 0.498 | 0.493 | 9e-30 | |
| 383864193 | 268 | PREDICTED: GTP-binding protein Di-Ras2-l | 0.364 | 0.507 | 0.5 | 2e-29 | |
| 383864195 | 274 | PREDICTED: GTP-binding protein Di-Ras2-l | 0.364 | 0.496 | 0.5 | 3e-29 | |
| 158292876 | 280 | AGAP005248-PA [Anopheles gambiae str. PE | 0.361 | 0.482 | 0.519 | 3e-29 | |
| 242009101 | 274 | GTP-binding protein Di-Ras2, putative [P | 0.367 | 0.5 | 0.509 | 3e-29 |
| >gi|270004334|gb|EFA00782.1| hypothetical protein TcasGA2_TC003668 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 94/149 (63%), Gaps = 9/149 (6%)
Query: 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPI 63
M D ERIRLVILGG GVGKSCI+KRFL NTYSD+YRST+EDLY+R++ +G +T+K +
Sbjct: 7 TMSDYERIRLVILGGAGVGKSCIIKRFLMNTYSDKYRSTIEDLYNREYDLGHMTLKVDIL 66
Query: 64 VVAGNKSDMTSHHRAVHLEDVSEWLYC--ELPKLRYVIQ-----SSSFGD--EIPIVVAG 114
AG+ + +Y P + Q GD EIPIVVAG
Sbjct: 67 DTAGDMQFPAMRRLCIATAHAFLLVYAVTSAPSFDCIKQCFEEIREQRGDYQEIPIVVAG 126
Query: 115 NKSDMTSHHRAVHLEDVSEWLYCELPKLR 143
NK D+TS HR V +EDVSEW+YCELPKLR
Sbjct: 127 NKLDLTSTHREVRIEDVSEWVYCELPKLR 155
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189235554|ref|XP_967651.2| PREDICTED: similar to AGAP005248-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 94/148 (63%), Gaps = 9/148 (6%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M D ERIRLVILGG GVGKSCI+KRFL NTYSD+YRST+EDLY+R++ +G +T+K +
Sbjct: 1 MSDYERIRLVILGGAGVGKSCIIKRFLMNTYSDKYRSTIEDLYNREYDLGHMTLKVDILD 60
Query: 65 VAGNKSDMTSHHRAVHLEDVSEWLYC--ELPKLRYVIQ-----SSSFGD--EIPIVVAGN 115
AG+ + +Y P + Q GD EIPIVVAGN
Sbjct: 61 TAGDMQFPAMRRLCIATAHAFLLVYAVTSAPSFDCIKQCFEEIREQRGDYQEIPIVVAGN 120
Query: 116 KSDMTSHHRAVHLEDVSEWLYCELPKLR 143
K D+TS HR V +EDVSEW+YCELPKLR
Sbjct: 121 KLDLTSTHREVRIEDVSEWVYCELPKLR 148
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157116795|ref|XP_001658639.1| ras GTPase, putative [Aedes aegypti] gi|108876280|gb|EAT40505.1| AAEL007766-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 9/148 (6%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK----- 59
M D ERIRLVILGG GVGKSCI+KRFLF TYSD+YR TVEDLY+R++ +GAVT+K
Sbjct: 1 MSDFERIRLVILGGAGVGKSCIIKRFLFKTYSDKYRPTVEDLYNREYDLGAVTLKVDILD 60
Query: 60 ---EIPIVVAGNKSDMTSHHRAVHLEDVSEW-LYCELPKLRYVIQSSSFGDEIPIVVAGN 115
E+ S T+H + SE L C + + + +IP+V+ GN
Sbjct: 61 TSGEMQFPAMRRLSIATAHAFLLVYASTSELSLGCVKQCFEEIREQRADFQDIPMVIVGN 120
Query: 116 KSDMTSHHRAVHLEDVSEWLYCELPKLR 143
KSD++S HR V +EDVSEW++CELPKL+
Sbjct: 121 KSDLSSTHREVRIEDVSEWVFCELPKLK 148
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307185290|gb|EFN71390.1| GTP-binding protein Di-Ras2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 104/154 (67%), Gaps = 18/154 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FP- 282
VD+LDT GDLQFPAMRRLSIATAHAFLLVY+TT L SF+ VK FEE+REQR DFQ P
Sbjct: 56 VDLLDTAGDLQFPAMRRLSIATAHAFLLVYATTSLPSFECVKRCFEEVREQRPDFQEVPI 115
Query: 283 --AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
A +L +A A + + + + + C ++R +++ECSAKD+YNIK++
Sbjct: 116 VVAGNKLDLAPARREVPIEDVS-----EWLFCELPKLRA-----KVMECSAKDDYNIKDI 165
Query: 341 FRTFLTLSQILTTN----GDENSLKRRSSAYVNK 370
FR F+TLS+I+ N DE+ L+RR SAY ++
Sbjct: 166 FRCFVTLSRIVPKNPTGEADESGLRRRCSAYGSR 199
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380012409|ref|XP_003690276.1| PREDICTED: GTP-binding protein Di-Ras2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 18/154 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FP- 282
VD+LDT GDLQFPAMRRLSIATAHAFLLVY+TT L SF+ +K FEE+REQR DFQ P
Sbjct: 56 VDLLDTAGDLQFPAMRRLSIATAHAFLLVYATTSLPSFECIKRCFEEVREQRPDFQEVPI 115
Query: 283 --AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
A +L +AT + + + + + C ++R +++ECSAKD+YN+K++
Sbjct: 116 VVAGNKLDLATTRREVPIEDVS-----EWLYCELPKLRA-----KIMECSAKDDYNVKDI 165
Query: 341 FRTFLTLSQILTTN----GDENSLKRRSSAYVNK 370
FR F+TLS+I+ N DE+ L+RR SAY ++
Sbjct: 166 FRCFITLSKIVPKNHVGESDESGLRRRCSAYGSR 199
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787959|ref|XP_624318.2| PREDICTED: GTP-binding protein Di-Ras2-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 18/154 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FP- 282
VD+LDT GDLQFPAMRRLSIATAHAFLLVY+TT L SF+ +K FEE+REQR DFQ P
Sbjct: 56 VDLLDTAGDLQFPAMRRLSIATAHAFLLVYATTSLPSFECIKRCFEEVREQRPDFQEVPI 115
Query: 283 --AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
A +L +AT + + + + + C ++R +++ECSAKD+YN+K++
Sbjct: 116 VVAGNKLDLATTRREVPIEDVS-----EWLYCELPKLRA-----KIMECSAKDDYNVKDI 165
Query: 341 FRTFLTLSQILTTN----GDENSLKRRSSAYVNK 370
FR F+TLS+I+ N DE+ L+RR SAY ++
Sbjct: 166 FRCFITLSKIVPKNHVGESDESGLRRRCSAYGSR 199
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383864193|ref|XP_003707564.1| PREDICTED: GTP-binding protein Di-Ras2-like isoform 1 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 18/154 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FP- 282
VD+LDT GDLQFPAMRRLSIATAHAFLLVY+TT L SF+ VK FEE+REQR DFQ P
Sbjct: 56 VDLLDTAGDLQFPAMRRLSIATAHAFLLVYATTSLPSFECVKRCFEEVREQRPDFQEVPI 115
Query: 283 --AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
A ++ +AT + + + + + C ++R +++ECSAKD+YNIK++
Sbjct: 116 VVAGNKVDLATTRREVPIEDVS-----EWLFCELPKLRA-----KVMECSAKDDYNIKDI 165
Query: 341 FRTFLTLSQILTTN----GDENSLKRRSSAYVNK 370
FR F+TLS+I+ N DE+ L+RR SAY ++
Sbjct: 166 FRCFITLSKIVPKNHTGETDESGLRRRCSAYGSR 199
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383864195|ref|XP_003707565.1| PREDICTED: GTP-binding protein Di-Ras2-like isoform 2 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 18/154 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FP- 282
VD+LDT GDLQFPAMRRLSIATAHAFLLVY+TT L SF+ VK FEE+REQR DFQ P
Sbjct: 56 VDLLDTAGDLQFPAMRRLSIATAHAFLLVYATTSLPSFECVKRCFEEVREQRPDFQEVPI 115
Query: 283 --AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
A ++ +AT + + + + + C ++R +++ECSAKD+YNIK++
Sbjct: 116 VVAGNKVDLATTRREVPIEDVS-----EWLFCELPKLRA-----KVMECSAKDDYNIKDI 165
Query: 341 FRTFLTLSQILTTN----GDENSLKRRSSAYVNK 370
FR F+TLS+I+ N DE+ L+RR SAY ++
Sbjct: 166 FRCFITLSKIVPKNHTGETDESGLRRRCSAYGSR 199
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158292876|ref|XP_314163.4| AGAP005248-PA [Anopheles gambiae str. PEST] gi|157017198|gb|EAA09470.4| AGAP005248-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 99/152 (65%), Gaps = 17/152 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
VDILDT G++QFPAMRRLSIATAHAFLLVY+TT S VK FEEIREQR DFQ M
Sbjct: 56 VDILDTSGEMQFPAMRRLSIATAHAFLLVYATTSEASLGCVKQCFEEIREQRADFQDIPM 115
Query: 285 ----RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
+ + +H + + + + V C +++ ++LECSAKD+YNI E+
Sbjct: 116 VIVGNKYDLTASHREVRIEDVS-----EWVFCELPKLK-----VKVLECSAKDDYNIMEI 165
Query: 341 FRTFLTLSQILTTNGDENS---LKRRSSAYVN 369
FRTF+TLS+IL NG S LKRRSSAYV+
Sbjct: 166 FRTFVTLSRILPVNGSAESGSGLKRRSSAYVS 197
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242009101|ref|XP_002425331.1| GTP-binding protein Di-Ras2, putative [Pediculus humanus corporis] gi|212509105|gb|EEB12593.1| GTP-binding protein Di-Ras2, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 103/155 (66%), Gaps = 18/155 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPA 283
+DILDT GD+QFPAMRRLSIAT+HAFLLVY+TT SFQ+VK F EIREQR D Q P
Sbjct: 56 LDILDTSGDMQFPAMRRLSIATSHAFLLVYATTSESSFQAVKQCFNEIREQRADHQEIPI 115
Query: 284 M---RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
+ +L +A H + + + + + C +R +++ECSAKD YNIKE+
Sbjct: 116 VVVGNKLDLAATHREVSIEDVS-----EWLYCELPRLRA-----KIVECSAKDGYNIKEI 165
Query: 341 FRTFLTLSQILTTNGDENS--LKRRSSAYV--NKG 371
F+T L+LS+I+ N E++ LKRRSSAYV NKG
Sbjct: 166 FQTLLSLSKIIPANNTESTGGLKRRSSAYVSTNKG 200
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 373 | ||||||
| FB|FBgn0050158 | 280 | CG30158 [Drosophila melanogast | 0.372 | 0.496 | 0.452 | 5e-28 | |
| UNIPROTKB|F1N2Q9 | 199 | DIRAS2 "Uncharacterized protei | 0.222 | 0.417 | 0.452 | 1.9e-13 | |
| UNIPROTKB|F1RN13 | 199 | LOC100739440 "Uncharacterized | 0.222 | 0.417 | 0.452 | 5.2e-13 | |
| MGI|MGI:1915453 | 199 | Diras2 "DIRAS family, GTP-bind | 0.222 | 0.417 | 0.452 | 5.2e-13 | |
| RGD|1305580 | 199 | Diras2 "DIRAS family, GTP-bind | 0.222 | 0.417 | 0.452 | 5.2e-13 | |
| UNIPROTKB|E2RK40 | 199 | DIRAS2 "Uncharacterized protei | 0.222 | 0.417 | 0.452 | 8.5e-13 | |
| UNIPROTKB|Q96HU8 | 199 | DIRAS2 "GTP-binding protein Di | 0.222 | 0.417 | 0.452 | 8.5e-13 | |
| FB|FBgn0035733 | 434 | CG8641 [Drosophila melanogaste | 0.337 | 0.290 | 0.328 | 1.7e-12 | |
| ZFIN|ZDB-GENE-070912-620 | 227 | diras1b "DIRAS family, GTP-bin | 0.209 | 0.343 | 0.462 | 1.8e-12 | |
| UNIPROTKB|E1C055 | 199 | DIRAS2 "Uncharacterized protei | 0.182 | 0.341 | 0.485 | 3e-12 |
| FB|FBgn0050158 CG30158 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 67/148 (45%), Positives = 95/148 (64%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M D ERIRLV+LGG GVGKS I+KRFLF TY+D+YR+TVEDLY+R++ +G VT+K +
Sbjct: 1 MADLERIRLVLLGGAGVGKSSIVKRFLFKTYTDKYRATVEDLYNREYDLGGVTLKVDILD 60
Query: 65 VAGNKSDMTSHHRAVHLEDVSEWLYC--ELPKLRYVIQS-----SSFGD--EIPIVVAGN 115
+G+ ++ +Y P + V Q GD +IPIV+AGN
Sbjct: 61 TSGDMQFPAMRRLSIATAHAFMLVYAATSAPSFQCVKQCFEEIREQRGDFQDIPIVIAGN 120
Query: 116 KSDMTSHHRAVHLEDVSEWLYCELPKLR 143
K+D+ + HR V LE+V++W++CELP+LR
Sbjct: 121 KADLATTHREVKLEEVTDWVFCELPRLR 148
|
|
| UNIPROTKB|F1N2Q9 DIRAS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S +R V + ++L
Sbjct: 117 MLVGNKCD-ESPNREVESSEAEVL 139
|
|
| UNIPROTKB|F1RN13 LOC100739440 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 38/84 (45%), Positives = 54/84 (64%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S +R V + + L
Sbjct: 117 MLVGNKCD-ESPNREVESSEAEAL 139
|
|
| MGI|MGI:1915453 Diras2 "DIRAS family, GTP-binding RAS-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 38/84 (45%), Positives = 54/84 (64%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S +R V + + L
Sbjct: 117 MLVGNKCD-ESPNREVQSSEAEAL 139
|
|
| RGD|1305580 Diras2 "DIRAS family, GTP-binding RAS-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 38/84 (45%), Positives = 54/84 (64%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S +R V + + L
Sbjct: 117 MLVGNKCD-ESPNREVQSSEAEAL 139
|
|
| UNIPROTKB|E2RK40 DIRAS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 38/84 (45%), Positives = 54/84 (64%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S +R V + + L
Sbjct: 117 MLVGNKCD-ESPNREVESGEAEAL 139
|
|
| UNIPROTKB|Q96HU8 DIRAS2 "GTP-binding protein Di-Ras2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 38/84 (45%), Positives = 53/84 (63%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 116
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S R V + + L
Sbjct: 117 MLVGNKCD-ESPSREVQSSEAEAL 139
|
|
| FB|FBgn0035733 CG8641 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 42/128 (32%), Positives = 61/128 (47%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G FPAMRRLS T F+LV+S ESF+ V E I E + P
Sbjct: 216 LDILDTSGYHPFPAMRRLSFLTGDLFILVFSMDSRESFEEVVRLRENILETKWAALNPGS 275
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKC--YFEEIREQRQDFQLLECSAKDNYNIKEVFR 342
+ +++ C F++V+ I Q +ECSA+ NY I ++F
Sbjct: 276 GFKKKSLPKIPMILAGNKCDRDFKTVQVDEVMGYIAGQDNCCTFVECSARQNYRIDDLFH 335
Query: 343 TFLTLSQI 350
+ T+S +
Sbjct: 336 SLFTVSNL 343
|
|
| ZFIN|ZDB-GENE-070912-620 diras1b "DIRAS family, GTP-binding RAS-like 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +++I + + + IPI
Sbjct: 86 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYQQILAIKGNVENIPI 145
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD T R V ED
Sbjct: 146 MLVGNKSDETQ--REVKTED 163
|
|
| UNIPROTKB|E1C055 DIRAS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I + + D + IPI
Sbjct: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICQIKGDVESIPI 116
Query: 205 VVAGNKSD 212
++ GNK+D
Sbjct: 117 MLVGNKND 124
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 373 | |||
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 3e-24 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 7e-21 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 4e-17 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 3e-16 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 6e-16 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 9e-16 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 2e-15 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 4e-15 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 4e-15 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 5e-15 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 2e-14 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 5e-14 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 6e-14 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 6e-13 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 1e-12 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 5e-12 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 6e-12 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 1e-11 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 3e-11 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 4e-11 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 4e-11 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 4e-11 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 5e-11 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 6e-11 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 6e-11 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 8e-10 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 9e-10 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 1e-09 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-09 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 3e-09 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-09 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 4e-09 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 9e-09 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 1e-08 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 3e-08 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-08 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 3e-08 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 4e-08 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 4e-08 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 5e-08 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 5e-08 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 7e-08 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 1e-07 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 5e-07 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 6e-07 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 8e-07 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 8e-07 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 1e-06 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 1e-06 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 1e-06 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 2e-06 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 2e-06 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 3e-06 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 3e-06 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 4e-06 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 4e-06 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 5e-06 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 6e-06 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 6e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 8e-06 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 9e-06 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 2e-05 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 2e-05 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-05 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-05 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 4e-05 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 4e-05 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 5e-05 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-05 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 5e-05 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 6e-05 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 6e-05 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 7e-05 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 8e-05 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 8e-05 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 9e-05 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 1e-04 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 1e-04 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 1e-04 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 2e-04 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 2e-04 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 2e-04 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 2e-04 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 2e-04 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-04 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 2e-04 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 2e-04 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 2e-04 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 3e-04 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 4e-04 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 4e-04 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 4e-04 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 4e-04 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 5e-04 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-04 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 5e-04 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 6e-04 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 7e-04 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 7e-04 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 8e-04 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 0.001 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 0.001 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 0.001 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 0.001 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 0.001 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 0.002 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.002 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 0.002 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 0.002 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 0.002 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 0.003 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 0.003 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 0.003 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 0.003 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 0.003 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 0.003 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 0.004 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 0.004 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 0.004 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-24
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G +F AMR I F+LVYS T ESF+ +K E+I + +++PI
Sbjct: 49 LDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDK-EDVPI 107
Query: 205 VVAGNKSDMTSHHRAVHLED 224
V+ GNK D+ + R V E+
Sbjct: 108 VLVGNKCDL-ENERQVSTEE 126
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 7e-21
Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 34/134 (25%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G +F AMR I F+LVYS T ESF+ +K E+I + P +
Sbjct: 49 LDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R++S A + C F LE SAK
Sbjct: 109 LVGNKCDLENERQVSTEEGEAL-----------AEEWGCPF------------LETSAKT 145
Query: 334 NYNIKEVFRTFLTL 347
N NI E+F T +
Sbjct: 146 NINIDELFNTLVRE 159
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 4e-17
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G FPAMR+LSI AF LVYS ESF+ VK EEI E ++D + +PI
Sbjct: 49 IDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKED-KFVPI 107
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDT 230
VV GNK D + + +E D L T
Sbjct: 108 VVVGNKIDSLAERQ---VEAADALST 130
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-16
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQEIPIV 205
I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E I E + + ++IPI+
Sbjct: 53 ITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIM 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D S R V +
Sbjct: 113 LVGNKCD-ESPSREVSSSE 130
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 6e-16
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-------Q 197
+DILDT G+ FPAMRRLSI T F+LV+S ESF+ V E+I E + +
Sbjct: 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTK 109
Query: 198 DFQEIPIVVAGNKSDMTSHHRAVHLEDVDIL 228
+ +IP+V+ GNK+D R V ++V+ L
Sbjct: 110 ENVKIPMVICGNKADRDF-PREVQRDEVEQL 139
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 9e-16
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 217 HRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 276
L DILDT G +F AMR + T FLLVYS T +SF+ + + E+I +
Sbjct: 47 GEVCLL---DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVK 103
Query: 277 QDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QLLECSAKDN 334
P +LV + LE+ + V EE +E + + LE SAK+
Sbjct: 104 DRDDVP------------IVLVGNKCDLENERVVS--TEEGKELARQWGCPFLETSAKER 149
Query: 335 YNIKEVFRT 343
N+ E F
Sbjct: 150 INVDEAFYD 158
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-15
Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 202 IPIVVAGNKS-DMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 260
IP + + + + V L I DT G +F A+R L A FLLVY T +
Sbjct: 29 IPTIGVDFYTKTIEVDGKTVKL---QIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRD 85
Query: 261 SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE- 319
SF++VK + EEI + P +LV + LE + V EE
Sbjct: 86 SFENVKKWLEEILRHADE-NVP------------IVLVGNKCDLEDQRVVS--TEEGEAL 130
Query: 320 -QRQDFQLLECSAKDNYNIKEVFRT 343
+ +E SAK N N++E F
Sbjct: 131 AKELGLPFMETSAKTNENVEEAFEE 155
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-15
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G +F AMR + T FLLVYS T +SF+ + + E+I + D ++PIV
Sbjct: 53 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVK-DRDDVPIV 111
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ + R V E+
Sbjct: 112 LVGNKCDL-ENERVVSTEE 129
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 4e-15
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 217 HRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 276
L DILDT G +F AMR + T FLLVYS T +SF+ +K + E+I +
Sbjct: 45 GEVCLL---DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVK 101
Query: 277 QDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QLLECSAKDN 334
P +LV + LES + V EE +E + + LE SAK+
Sbjct: 102 DRDDVP------------IVLVGNKCDLESERVVS--TEEGKELARQWGCPFLETSAKER 147
Query: 335 YNIKEVFRT 343
N+ E F
Sbjct: 148 VNVDEAFYD 156
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 5e-15
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 33/132 (25%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP-- 282
+DILDT G FPAMR+LSI AF LVYS ESF+ VK EEI E ++D P
Sbjct: 49 IDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIV 108
Query: 283 ---------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
A R++ A A + + E + +E SAKD
Sbjct: 109 VVGNKIDSLAERQVEAADALSTV----------------------ELDWNNGFVEASAKD 146
Query: 334 NYNIKEVFRTFL 345
N N+ EVF+ L
Sbjct: 147 NENVTEVFKELL 158
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G +F AMR + T FLLVYS T +SF+ +K + E+I + D ++PIV
Sbjct: 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVK-DRDDVPIV 109
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V E+
Sbjct: 110 LVGNKCDL-ESERVVSTEE 127
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 5e-14
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G+ FPAMRRLSI T F+LV+S ESF+ V E+I E + +
Sbjct: 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKS-----CL 104
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQLL---------ECSAKD 333
+ + +++ K + RE ++D QL+ E SAK
Sbjct: 105 KNKTKENVKIPMVICGN---------KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKK 155
Query: 334 NYNIKEVFRTFLTLSQI 350
N N+ E+FR +L+++
Sbjct: 156 NSNLDEMFRALFSLAKL 172
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 6e-14
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I DT G +F A+R L A FLLVY T +SF++VK + EEI + +PIV
Sbjct: 51 QIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE--NVPIV 108
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V E+
Sbjct: 109 LVGNKCDL-EDQRVVSTEE 126
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 6e-13
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK-EIPIVVAGNK- 69
+LV+LG GVGKS + RF+ + + Y T+ED Y + V T +I + AG +
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDI-LDTAGQEE 59
Query: 70 -SDMTSHH-RAVH-------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S M + R + + E+ +R I +++PIV+ GNK D+
Sbjct: 60 FSAMRDQYIRNGDGFILVYSITSRESFE--EIKNIREQILRVKDKEDVPIVLVGNKCDL- 116
Query: 121 SHHRAVHLEDVSEW 134
+ R V E+
Sbjct: 117 ENERQVSTEEGEAL 130
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 36/136 (26%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QFPAM 284
I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E I E + + + P M
Sbjct: 53 ITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIM 112
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S + A + C F +E SAK
Sbjct: 113 LVGNKCDESPSREVSSSEGAALARTW-----------NCAF------------METSAKT 149
Query: 334 NYNIKEVFRTFLTLSQ 349
N+N++E+F+ L L +
Sbjct: 150 NHNVQELFQELLNLEK 165
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-12
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
RLV +G GVGK+ +++RFL++T+ ++R TVE+L+S+++ V V + + +G+ S
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60
Query: 72 MTSHHRAVHLEDVSEWLYC--------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
++ D +Y E+ +LR I +PIVV GNK D +
Sbjct: 61 PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAER 120
Query: 124 RAVHLEDVS 132
+ + +S
Sbjct: 121 QVEAADALS 129
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-12
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+V
Sbjct: 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMV 110
Query: 206 VAGNKSDMTS 215
+ GNK D+ +
Sbjct: 111 LVGNKCDLAA 120
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-11
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 39/154 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVV---A 66
++V++G GVGK+ +L RF+ N +S+ Y+ST+ D S+ V +K + + A
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVK---LQIWDTA 57
Query: 67 GN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPI 110
G +S +S++R H E++ +W L + + + IPI
Sbjct: 58 GQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKW-------LNELKEYAP--PNIPI 108
Query: 111 VVAGNKSDMTSHHRAVHLEDVSEW------LYCE 138
++ GNKSD+ R V E+ ++ L+ E
Sbjct: 109 ILVGNKSDLED-ERQVSTEEAQQFAKENGLLFFE 141
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-11
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQE 201
++ILDT G QF AMR L I F LVYS T +SF ++ ++REQ +D ++
Sbjct: 51 LEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQ----DLREQILRVKDTED 106
Query: 202 IPIVVAGNKSDMTS 215
+P+++ GNK D+
Sbjct: 107 VPMILVGNKCDLED 120
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-11
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK----------- 59
+LV++G GVGKS +L RF N + + Y T+ D Y++ V T+K
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 60 ------------EIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
+ ++V D+TS E+V +W L ++ +
Sbjct: 61 FRALRPLYYRGAQGFLLV----YDITSR---DSFENVKKW----LEEILRH-----ADEN 104
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+PIV+ GNK D+ R V E+
Sbjct: 105 VPIVLVGNKCDL-EDQRVVSTEEGEAL 130
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI-REQRQDFQEIP 203
++ILDT G QF +MR L I F++VYS ++FQ +K ++I R + ++++P
Sbjct: 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG--YEKVP 108
Query: 204 IVVAGNKSDMTSHHRAV 220
I++ GNK D+ R V
Sbjct: 109 IILVGNKVDL-ESEREV 124
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR---QDFQE 201
++ILDT G QF AMR L I + FLLVYS T S + E+REQ +D
Sbjct: 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNEL----GELREQVLRIKDSDN 106
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+P+V+ GNK+D+ R V ED
Sbjct: 107 VPMVLVGNKADLED-DRQVSRED 128
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-11
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G +F AMR + T FLLV+S T SF+ V + +I + +D E P++
Sbjct: 53 DILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL-RVKDRDEFPMI 111
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ H R V E+
Sbjct: 112 LVGNKADL-EHQRQVSREE 129
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 6e-11
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ AH +LVY T ESF+++ + E++E IPI++
Sbjct: 53 IWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP--NIPIIL 110
Query: 207 AGNKSDMTSHHRAVHLEDV 225
GNKSD+ R V E+
Sbjct: 111 VGNKSDLED-ERQVSTEEA 128
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-11
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 145 VDILDTCGDLQFPAMRRL--SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEI 202
++I DT G Q L S+ A F+LVYS T SF V + IRE ++ EI
Sbjct: 49 LEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEI 108
Query: 203 PIVVAGNKSDMTSHHRAVHLED 224
P+++ GNK+D+ H R V E+
Sbjct: 109 PVILVGNKADL-LHSRQVSTEE 129
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-10
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI-REQRQDFQEIP 203
+++LDT G ++ A+R I F+LVYS T +F+ V+ + E+I R + + ++P
Sbjct: 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP 108
Query: 204 IVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ 263
I++ GNK D + R V E+ L RRL F+ + T + +
Sbjct: 109 IMIVGNKCDKV-YEREVSTEEGAAL----------ARRLGC----EFIEASAKTNVNVER 153
Query: 264 SVKCYFEEIREQRQDFQFP 282
+ +R+QRQ Q P
Sbjct: 154 AFYTLVRALRQQRQGGQGP 172
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-10
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
++ILDT G QF AMR L + F+LVYS T +F ++ E+I + D +++P+
Sbjct: 51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPM 109
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNK D+ R V E
Sbjct: 110 ILVGNKCDLED-ERVVGKEQ 128
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
+DILDT G +F AMR + F++ YS T SFQ + E I R ++IP
Sbjct: 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLT-EDIP 109
Query: 204 IVVAGNKSDMTSHHR 218
+V+ GNK D+ +
Sbjct: 110 LVLVGNKVDLEQQRQ 124
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-09
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ AH +LVY T ESF+++ + E++E P
Sbjct: 53 IWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEY-APPNIP---- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+LV + + LE + V EE ++ + E SAK N+ E F +
Sbjct: 108 --------IILVGNKSDLEDERQVS--TEEAQQFAKENGLLFFETSAKTGENVDEAFES 156
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-09
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++ILDT G QF +MR L I F++VYS ++FQ +K ++I + + P
Sbjct: 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-- 108
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+LV + LES + V + +E SAK + E+F
Sbjct: 109 ----------IILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-09
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL VYS T SF+ + + E+I + D +P+
Sbjct: 55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVK-DKDRVPM 113
Query: 205 VVAGNKSDMTS 215
++ GNK D+ S
Sbjct: 114 ILVGNKCDLDS 124
|
Length = 189 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-09
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIV-VAGN 68
+++++G GVGKS +L RF +S++Y+ST+ D ++ V +K + I AG
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVK-LQIWDTAGQ 59
Query: 69 ---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+S +S++R E++ W L +LR +S + I++
Sbjct: 60 ERFRSITSSYYRGAVGALLVYDITNRESFENLENW----LKELR--EYASP---NVVIML 110
Query: 113 AGNKSDMTSHHRAVHLEDVSEW 134
GNKSD+ R V E+ +
Sbjct: 111 VGNKSDL-EEQRQVSREEAEAF 131
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-09
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
DILDT G +F AMR + T FLLV+S T SF+ V + +I + +FP
Sbjct: 53 DILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP--- 109
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNYNIKEVF 341
+LV + LE + V EE +E + ++ +E SAKD N+ + F
Sbjct: 110 ---------MILVGNKADLEHQRQVS--REEGQELARQLKIPYIETSAKDRVNVDKAF 156
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-08
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ A LLVY T ESF++++ + +E+RE + I++
Sbjct: 53 IWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS--PNVVIML 110
Query: 207 AGNKSDMTSHHRAVHLED 224
GNKSD+ R V E+
Sbjct: 111 VGNKSDL-EEQRQVSREE 127
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPA 283
++ILDT G QF AMR L I F LVYS T +SF ++ ++REQ
Sbjct: 50 MLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQ----DLREQ-------- 97
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+ R+ +LV + LE + V K + + Q + LE SAK N+ E+F
Sbjct: 98 ILRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-08
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY-SRDFHVGAVTIKEIPIVVA 66
+ ++V+LG GVGK+ +L R + + + + Y T+ +L ++ IK A
Sbjct: 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62
Query: 67 GN---KSDMTSHHR-------------AVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPI 110
G +S ++R ++++E EL +L D++PI
Sbjct: 63 GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA--------PDDVPI 114
Query: 111 VVAGNKSDMTSHH 123
++ GNK D+
Sbjct: 115 LLVGNKIDLFDEQ 127
|
Length = 219 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ + A +LVY T +SFQ VK + +E+++ R + I +V+
Sbjct: 53 IWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVI 110
Query: 207 AGNKSDMTSHHRAVHLEDVD 226
GNK D+ R V + +
Sbjct: 111 VGNKIDLER-QRVVSKSEAE 129
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-08
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
++I+DT G ++ + + H ++LVYS T +SF+ VK +++I + + +PI
Sbjct: 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPI 109
Query: 205 VVAGNKSDMTSHHRAVHLED 224
V+ GNKSD+ R V E+
Sbjct: 110 VLVGNKSDLHM-ERQVSAEE 128
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-08
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 115 NKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVY 174
++ AV L + ++I D G + + + A A LLVY
Sbjct: 27 EPLEIQGDTLAVDT------LEVDGDT-GLLNIWDFGGREELKFEHIIFMKWADAILLVY 79
Query: 175 STTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNK 210
T ES V + R+ +IP+++ GNK
Sbjct: 80 DLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-08
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPA 283
++I+DT G ++ + + H ++LVYS T +SF+ VK +++I + P
Sbjct: 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI 109
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVF 341
+ LV + + L + V EE ++ + LE SAK+N N++E F
Sbjct: 110 V------------LVGNKSDLHMERQVSA--EEGKKLAESWGAAFLESSAKENENVEEAF 155
Query: 342 RTFLTLSQILTTNGDEN 358
+ + +
Sbjct: 156 ELLIEEIEKVENPLPPG 172
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 141 KLRYVDILDTCG-----DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 195
+ ++DT G L + RL + A LLV +T ES + K +
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK 104
Query: 196 RQDFQEIPIVVAGNKSDM 213
IPI++ GNK D+
Sbjct: 105 E----GIPIILVGNKIDL 118
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-08
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 215 SHHRAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 270
S+ + V ++ ++ILDT G QF AMR L + F+LVYS T +F ++ E
Sbjct: 37 SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLRE 96
Query: 271 EIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330
+I + P +LV + LE + V + ++ LE S
Sbjct: 97 QILRVKDTEDVP------------MILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETS 144
Query: 331 AKDNYNIKEVF 341
AK N+ E+F
Sbjct: 145 AKAKINVNEIF 155
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKS 70
++V+LG GVGKS + +F+ N + + Y T+ED Y + + G EI + AG +
Sbjct: 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEI-LDTAG--T 59
Query: 71 DMTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ + R ++++ SE EL +LR + D +P+V+ GNK+D+
Sbjct: 60 EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119
Query: 121 SHHRAVHLED 130
R V ED
Sbjct: 120 D-DRQVSRED 128
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-07
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 41/148 (27%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY-SRDFHVGAVTIK-EI------ 61
+ +LV+LG VGKS I+ RF+ N +S+ ST+ + ++ ++ T+K EI
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60
Query: 62 -------P---------IVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFG 105
P IVV D+TS E W+ EL Q
Sbjct: 61 ERYRSLAPMYYRGAAAAIVVY----DITSEES---FEKAKSWVK-EL-------QEHG-P 104
Query: 106 DEIPIVVAGNKSDMTSHHRAVHLEDVSE 133
I I +AGNK+D+ S R V E+ E
Sbjct: 105 PNIVIALAGNKADLES-KRQVSTEEAQE 131
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-07
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P
Sbjct: 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP--- 108
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNYNIKEVFRT 343
+LV + L + ++V + ++ + + + +E SAK ++E F T
Sbjct: 109 ---------MVLVGNKCDLAA-RTVS--TRQGQDLAKSYGIPYIETSAKTRQGVEEAFYT 156
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-07
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 221 HLEDVDILDTCG-----DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
+ ++DT G L + RL + A LLV +T ES + K +
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK 104
Query: 276 RQDFQFPAMRRLSIATAHAFLLVYSTT-CLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
+LV + LE + + E + + E SAK
Sbjct: 105 EG---------------IPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTG 149
Query: 335 YNIKEVFRT 343
+ E+F
Sbjct: 150 EGVDELFEK 158
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I+DT Q A I A+ LVYS + + ++ + + R+ ++PI++
Sbjct: 53 IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKW--LPLIRRLGVKVPIIL 110
Query: 207 AGNKSDMTSHHRAVHLEDV 225
GNKSD+ LE+
Sbjct: 111 VGNKSDLRDGSSQAGLEEE 129
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 19/141 (13%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKS 70
+LV+LG GVGKS + +F+ + D+Y T+ED Y + V + EI + AG +
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEI-LDTAG--T 59
Query: 71 DMTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ + R +++++ ++ + +L LR I +++P+++ GNK D+
Sbjct: 60 EQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119
Query: 121 SHHRAVHLED----VSEWLYC 137
R V E+ +W C
Sbjct: 120 D-ERVVSKEEGQNLARQWGNC 139
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 32/126 (25%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKS 70
++V+LG GVGKS + +F+ T+ ++Y T+ED Y ++ V + ++ EI + AG +
Sbjct: 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEI-LDTAG--T 59
Query: 71 DMTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ + R +++++ V++ + ++ +R I +++PI++ GNK D+
Sbjct: 60 EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL- 118
Query: 121 SHHRAV 126
R V
Sbjct: 119 ESEREV 124
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI-REQRQDFQEIP 203
++ILDT G + A+R + FLLV+S T +ESF ++ + E+I R + D +P
Sbjct: 50 LNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDD--NVP 107
Query: 204 IVVAGNKSDMTSHHRAVHLED 224
+++ GNK D+ R V +E+
Sbjct: 108 LLLVGNKCDLE-DKRQVSVEE 127
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
D++ILDT G QF AMR L I + FLLVYS T S + E+REQ
Sbjct: 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNEL----GELREQ 97
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 215 SHHRAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 270
S+ + +++ +DILDT G ++ AMR + T FL VYS T SF+ + + E
Sbjct: 41 SYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFRE 100
Query: 271 EIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QLLE 328
+I + + P +LV + L+S + V E +E + F LE
Sbjct: 101 QILRVKDKDRVP------------MILVGNKCDLDSERQVST--GEGQELAKSFGIPFLE 146
Query: 329 CSAKDNYNIKEVF 341
SAK N+ E F
Sbjct: 147 TSAKQRVNVDEAF 159
|
Length = 189 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAV-------TIKEIPI 63
R+V+LG VGK+ I+ RFL + ++Y T+ED + + + + G V T P
Sbjct: 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF 61
Query: 64 VVAGNKSDMT--------------SHHRAVHL-EDVSEWLYCELPKLRYVIQSSSFGDEI 108
S +T S L E + E C K + ++ I
Sbjct: 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK-------I 114
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEWL 135
P+V+ GNK+D R V ++V + +
Sbjct: 115 PMVICGNKADRDF-PREVQRDEVEQLV 140
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-06
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 17/122 (13%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ A LLVY T ESF++++ + +E+RE
Sbjct: 53 IWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP-NVV---- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTF 344
+LV + + LE + V EE + E SAK N N++E F
Sbjct: 108 --------IMLVGNKSDLEEQRQVS--REEAEAFAEEHGLPFFETSAKTNTNVEEAFEEL 157
Query: 345 LT 346
Sbjct: 158 AR 159
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-06
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR 49
+LV+LGG GVGKS + +F+ + D Y T+ED Y +
Sbjct: 4 KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRK 41
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 39/147 (26%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-LYSRDFHVGAVTIK-EI------- 61
++V+LG VGK+ ++ R++ N +++++ ST + + + ++G I I
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 62 ------PI--------VVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
PI ++ + +D S + V +W+ EL ++R G+
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADS------FQKVKKWIK-ELKQMR--------GNN 105
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I +V+ GNK D+ R V + E+
Sbjct: 106 ISLVIVGNKIDLER-QRVVSKSEAEEY 131
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-06
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAG 208
DT G ++ +R LS FLL +S SF++VK + E + +PI++ G
Sbjct: 54 DTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKW--YPEIKHYCPNVPIILVG 111
Query: 209 NKSDM 213
K D+
Sbjct: 112 TKIDL 116
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-06
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV-----A 66
+LV+LG GVGKS + +F+ + D Y T+ED Y + + I ++ A
Sbjct: 2 KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQ-----IEIDGEVCLLDILDTA 56
Query: 67 GNK--SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAG 114
G + S M R ++ +L E+ K R I D++PIV+ G
Sbjct: 57 GQEEFSAM----RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVG 112
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V E+
Sbjct: 113 NKCDL-ESERVVSTEE 127
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 16/121 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G +F AMR + F++ YS T SFQ + E I R P
Sbjct: 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIP-- 109
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ--LLECSAKDNYNIKEVFR 342
+LV + LE + V EE R ++F E SA + I + F
Sbjct: 110 ----------LVLVGNKVDLEQQRQVTT--EEGRNLAREFNCPFFETSAALRFYIDDAFH 157
Query: 343 T 343
Sbjct: 158 G 158
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-06
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ AHA LL+Y T SF +++ + EI E Q ++ I++
Sbjct: 54 IWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ--SDVVIML 111
Query: 207 AGNKSDMTSHHRAVHLED 224
GNK+DM+ R V ED
Sbjct: 112 LGNKADMSG-ERVVKRED 128
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 19/131 (14%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR-----DFHVGAVTIKEIPIVV 65
+R+ +LG GVGK+ I+++FL + + Y T R V + I ++P +
Sbjct: 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60
Query: 66 A--GNKSDMTSHHRAVHLEDVSEWLY----CELPKLRYV-------IQSSSFGD-EIPIV 111
G R L + ++ C YV +++ G+ E PIV
Sbjct: 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV 120
Query: 112 VAGNKSDMTSH 122
V GNK D H
Sbjct: 121 VVGNKRDQQRH 131
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 155 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIVVAGNKSDM 213
++ R + + AF+LVY +SF VK ++I E R +E PIVV GNK D
Sbjct: 69 EWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128
Query: 214 TSH 216
H
Sbjct: 129 QRH 131
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 39/148 (26%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV-----A 66
+++ILG GVGK+ ++ +++ +S++Y++T+ DF VT+ + + + A
Sbjct: 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVTVDDRLVTLQIWDTA 57
Query: 67 GNKS-------------------DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSS-SFGD 106
G + D+T+ E + W + ++IQ+S +
Sbjct: 58 GQERFQSLGVAFYRGADCCVLVYDVTN---PKSFESLDSW------RDEFLIQASPRDPE 108
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
P VV GNK D+ R V + +W
Sbjct: 109 NFPFVVLGNKIDLEE-KRQVSTKKAQQW 135
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + T+K
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVK 52
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++GG GVGKS + +F+ N + D Y T+ED Y + + T + AG +
Sbjct: 7 KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--E 64
Query: 72 MTSHHRAVHLEDVSEWL----------YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
S R ++ +L + E+ R I D +P+++ GNK D+ S
Sbjct: 65 EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124
|
Length = 189 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKS 70
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V G + EI + AG +
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEI-LDTAG--T 59
Query: 71 DMTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ + R +++++ ++ + +L LR I +++P+++ GNK D+
Sbjct: 60 EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119
Query: 121 SHHRAVHLED 130
R V E
Sbjct: 120 D-ERVVGKEQ 128
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
VD DT G +F M AHA +LV+ T +++++ ++EE+RE R EIP
Sbjct: 51 VDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPC 107
Query: 205 VVAGNKSDM 213
+V NK D+
Sbjct: 108 IVVANKIDL 116
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
+P V +++T + V+L + DT G ++ +R LS FLL +S S
Sbjct: 30 VPTVFDNYSANVTVDGKQVNLG---LWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSS 86
Query: 262 FQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLV---------YSTTCLESFQSVK 311
F++VK ++ EI+ + +LV +T +
Sbjct: 87 FENVKTKWYPEIKHYCPNVP--------------IILVGTKIDLRDDGNTLKKLEKKQKP 132
Query: 312 CYFEEIREQRQD---FQLLECSAKDNYNIKEVF 341
EE + ++ + +ECSA +KEVF
Sbjct: 133 ITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVEDLY-SRDFHVGAVTIKEIPIVVAG 67
I++VI+G VGKS +L R L N S Y+ Y + T K + AG
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 68 --NKSDMTSHHR------------AVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVA 113
+ + + + + DV E L + ++ + +S +PI++
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-----GVPIILV 115
Query: 114 GNKSD 118
GNK D
Sbjct: 116 GNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 34/128 (26%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV-----A 66
+LV LG Q VGK+ I+ RF+++T+ ++Y++T+ DF + + + + + A
Sbjct: 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATI----GIDFLSKTMYVDDKTVRLQLWDTA 57
Query: 67 GN---KSDMTSHHRAVHL-------------EDVSEWLYCELPKLRYVIQSSSFGDEIPI 110
G +S + S+ R + ++ +W ++ R G+++ I
Sbjct: 58 GQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKW-IDDVRDER--------GNDVII 108
Query: 111 VVAGNKSD 118
V+ GNK+D
Sbjct: 109 VLVGNKTD 116
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G F ++ R A LLVY T E+F + + E+ R+ + I++
Sbjct: 57 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS--NMTIML 114
Query: 207 AGNKSDMTSHHRAVHLED 224
GNK D+ R V E+
Sbjct: 115 IGNKCDL-ESRREVSYEE 131
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 145 VDILDTCGDLQFPAMRRLSIA-----TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 199
V + DT G +F R S+ HA + VY T + SF S+ + EE EQ
Sbjct: 53 VQLWDTAGQERF----RKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEEC-EQHSLP 107
Query: 200 QEIPIVVAGNKSDM 213
E+P ++ GNK D+
Sbjct: 108 NEVPRILVGNKCDL 121
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 32/135 (23%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIR---------- 273
+ + DT G + +R LS L+ YS S +V+ ++ E+
Sbjct: 54 LALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVL 113
Query: 274 -----EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328
+ R+D + R + Q E + + +E
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQ-----------GLEPVTPEQG-----ESVAKSIGAVAYIE 157
Query: 329 CSAKDNYNIKEVFRT 343
CSAK N+ EVF
Sbjct: 158 CSAKLMENVDEVFDA 172
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL-ESFQSVKC-YFEEIREQRQDFQEI 202
++LDT G + A+RRL + L V+ L + + +EI + +
Sbjct: 53 FNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SGV 110
Query: 203 PIVVAGNKSD 212
PI++ GNK D
Sbjct: 111 PIILVGNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ I DT G +F + + +A+ ++ Y T SF+SV + EE+ +
Sbjct: 54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEK---------- 103
Query: 285 RRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQLL---ECSAKDNYNIKEV 340
++ LL+ C LE + V FEE + + +L E SAK++ N++E
Sbjct: 104 ----YGASNVVLLLIGNKCDLEEQREVL--FEEACTLAEHYGILAVLETSAKESSNVEEA 157
Query: 341 FR 342
F
Sbjct: 158 FL 159
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 9e-05
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY T ++F +V+ + E+R+ I I++
Sbjct: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMM 122
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
AGNKSD+ +H R+V ED L L F
Sbjct: 123 AGNKSDL-NHLRSVAEEDGQALAEKEGLSF 151
|
Length = 216 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAG 67
+LV++GG GVGKS + +F+ + + Y T+ED Y++ + G +I + AG
Sbjct: 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDI-LDTAG 59
Query: 68 NK--SDMTSHH-RAVH-------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKS 117
+ S M + R + D + E+ K I DE P+++ GNK+
Sbjct: 60 QEEFSAMREQYMRTGEGFLLVFSVTDRGS--FEEVDKFHTQILRVKDRDEFPMILVGNKA 117
Query: 118 DMTSHHRAVHLEDVSE 133
D+ H R V E+ E
Sbjct: 118 DL-EHQRQVSREEGQE 132
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVVAGNKS 70
+ +LG GVGKS + RFL + Y +E LYSR VTI +++ + + +
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQ-----VTIDGEQVSLEIQ-DTP 55
Query: 71 DMTSHHRAVHLEDVSEW------LY--CE-------LPKLRYVIQSSSFGDEIPIVVAGN 115
+ LE W +Y + L+ + + EIP+++ GN
Sbjct: 56 GQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGN 115
Query: 116 KSDMTSHHRAVHLED 130
K+D+ H R V E+
Sbjct: 116 KADL-LHSRQVSTEE 129
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF+ K + +E++E I I
Sbjct: 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGP--PNIVIA 110
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+AGNK+D+ S R V E+
Sbjct: 111 LAGNKADLES-KRQVSTEEA 129
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNK- 69
+LV++G GVGKS + + + N + D Y T+ED Y + + G + +I + AG +
Sbjct: 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI-LDTAGQEE 61
Query: 70 -SDMTSHH--------------RAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + ED+ + R I+ D++P+V+ G
Sbjct: 62 YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTY--------REQIKRVKDSDDVPMVLVG 113
Query: 115 NKSDMTSHHRAVHLEDVSE 133
NK D+ + R V +
Sbjct: 114 NKCDLAA--RTVSTRQGQD 130
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 39/142 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR-------DFHVGAVTIKEIPIV 64
++ +LG + VGKS + +F+ + + Y T+E+ +S+ ++H+ EI +
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHL------EI-VD 55
Query: 65 VAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQS-SSF---------------GDEI 108
AG D S + + ++ L Y + S SF + +
Sbjct: 56 TAGQ--DEYSILPQKYSIGIHGYI------LVYSVTSRKSFEVVKVIYDKILDMLGKESV 107
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
PIV+ GNKSD+ R V E+
Sbjct: 108 PIVLVGNKSDLHM-ERQVSAEE 128
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++ILDT G + A+R + FLLV+S T +ESF ++ + E+I ++D P
Sbjct: 50 LNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVP-- 107
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
LLV + LE + V ++ +E SAK N+ +VF
Sbjct: 108 ----------LLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G +F ++ I + ++VY T +SF + + +++R++R + ++ IV+
Sbjct: 53 LWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVL 110
Query: 207 AGNKSD 212
GNK+D
Sbjct: 111 VGNKTD 116
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQE-I 202
+ + DT G + +R LS L+ YS S +V+ ++ E+ F
Sbjct: 54 LALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNH----FCPGT 109
Query: 203 PIVVAGNKSDMTSHHRAVHL 222
PIV+ G K+D+ +V
Sbjct: 110 PIVLVGLKTDLRKDKNSVSK 129
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 140 PKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 199
K + I DT G +F + + +A+ ++ Y T SF+SV + EE+ +
Sbjct: 49 GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVE--KYGA 106
Query: 200 QEIPIVVAGNKSDMTSHHRAVHLEDVDIL 228
+ +++ GNK D+ R V E+ L
Sbjct: 107 SNVVLLLIGNKCDL-EEQREVLFEEACTL 134
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V++G GVGKS IL RF N + +ST+ + +R V T+K AG
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 69 -KSDMTSHHRAV-------------HLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R ++V WL +LR S+ I I++AG
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLR----ELRDHADSN-----IVIMMAG 124
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ +H R+V ED
Sbjct: 125 NKSDL-NHLRSVAEED 139
|
Length = 216 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T +F++V+ + +E+R+ I I++ GNKSD+ H RAV E+
Sbjct: 76 AVGALLVYDITKKSTFENVERWLKELRDHAD--SNIVIMLVGNKSDL-RHLRAVPTEE 130
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G F ++ R A LLVY T E+F + + E+ R+ + I++
Sbjct: 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIML 116
Query: 207 AGNKSDMTSHHRAVHLED 224
GNK D+ +H RAV E+
Sbjct: 117 IGNKCDL-AHRRAVSTEE 133
|
Length = 210 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIP----IVVAG 67
++V+LG GVGKS + +F+ +++ D + T+ED Y I P I+
Sbjct: 4 KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-----ARIDNEPALLDILDTA 58
Query: 68 NKSDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKS 117
+++ T+ R ++ ++ C E + + +I ++IP+V+ GNK
Sbjct: 59 GQAEFTA-MRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKV 117
Query: 118 DMTSHHR 124
D+ +
Sbjct: 118 DLEQQRQ 124
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 45/146 (30%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY----SRDFHVGAVTIKEIPIVVAG 67
R+V+ G GVGKS ++ RF+ T+ + Y T+ED Y S + + I
Sbjct: 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQI--------- 53
Query: 68 NKSDMTSHHRAVHLEDVSEWLYCELPK-----LRYVIQSSSFGDE--------------- 107
+D T H+ ++ +S + K L Y I S +E
Sbjct: 54 --TDTTGSHQFPAMQRLS------ISKGHAFILVYSITSKQSLEELKPIYELICEIKGNN 105
Query: 108 ---IPIVVAGNKSDMTSHHRAVHLED 130
IPI++ GNK D S R V +
Sbjct: 106 LEKIPIMLVGNKCD-ESPSREVSSSE 130
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+++LDT G ++ A+R I F+LVYS T +F+ V+ + E+I+
Sbjct: 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ----------- 97
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QLLECSAKDNYNIKEVFR 342
R+ +A ++ + + EE + + +E SAK N N++ F
Sbjct: 98 -RVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFY 156
Query: 343 T 343
T
Sbjct: 157 T 157
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 35/140 (25%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV---A 66
+++++G VGK+C+++RF T+S+R +T+ DF + + I K + + + A
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTI----GVDFTMKTLEIQGKRVKLQIWDTA 60
Query: 67 GNKSDMT---SHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPI 110
G + T S++R+ + E V W+ E+ K + +
Sbjct: 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIE-EVEKYG--------ASNVVL 111
Query: 111 VVAGNKSDMTSHHRAVHLED 130
++ GNK D+ R V E+
Sbjct: 112 LLIGNKCDL-EEQREVLFEE 130
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ + +A+A +L Y TC ESF+ + + EI Q+ +
Sbjct: 60 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE------QYANNKV 113
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
++I LV + L + V E QD LE SAK++ N++++F
Sbjct: 114 ITI-------LVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLF 161
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 210 KSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRL--SIATAHAFLLVYSTTCLESFQSVKC 267
+T V LE I DT G Q L S+ A F+LVYS T SF V
Sbjct: 37 SRQVTIDGEQVSLE---IQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQ 93
Query: 268 YFEEIREQRQ 277
+ IRE ++
Sbjct: 94 LLQLIREIKK 103
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQEIPIV 205
+ DT G ++ ++R A+ L+VY +T ES + + + EE+RE D ++PI+
Sbjct: 58 LWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPIL 115
Query: 206 VAGNKSDMTSHH 217
+ GNK D+
Sbjct: 116 LVGNKIDLFDEQ 127
|
Length = 219 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 5e-04
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ + +A+A +L Y TC ESF+ + + EI EQ + + I I+V
Sbjct: 60 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-EQYANNKVITILV 118
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 119 -GNKIDL 124
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
R + L+ + I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 42 RTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI- 100
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSA 331
R + + LLV + L + V + E +E + + LE SA
Sbjct: 101 -----------DRYASENVNK-LLVGNKCDLTDKKVVD--YTEAKEFADELGIPFLETSA 146
Query: 332 KDNYNIKEVFRT 343
K+ N++E F T
Sbjct: 147 KNATNVEEAFMT 158
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 55 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 112
Query: 207 AGNKSDMTSHHRAV 220
GNK D+T + V
Sbjct: 113 VGNKCDLTD-KKVV 125
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ AM R+ A A ++ Y T SF+ K + +E+ + + I +
Sbjct: 54 IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL---QNLEEHCKIYL 110
Query: 207 AGNKSDMTSHH---RAVHLEDV 225
G KSD+ R V DV
Sbjct: 111 CGTKSDLIEQDRSLRQVDFHDV 132
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R LS FL+ +S SF++VK ++ E+ + +PI++
Sbjct: 52 DTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV---KHFCPNVPIILV 108
Query: 208 GNKSDM 213
G K D+
Sbjct: 109 GTKLDL 114
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G F ++ R A LLVY T E+F + + E+ R+ M
Sbjct: 57 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN----SNM-- 110
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+L+ + LES + V E + +E SAK N++E F
Sbjct: 111 -------TIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAF 158
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 39/155 (25%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRST--VEDLYSRDFHVGAVTIKEIPIVVAGNK 69
++V++G GVGKS +L RF N ++ +ST VE +R + TIK AG +
Sbjct: 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE-FATRTIQIDGKTIKAQIWDTAGQE 63
Query: 70 S-------------------DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGD-EIP 109
D+T E+V W L +LR D I
Sbjct: 64 RYRAITSAYYRGAVGALLVYDITKK---STFENVERW----LKELR------DHADSNIV 110
Query: 110 IVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRY 144
I++ GNKSD+ H RAV E+ + E L +
Sbjct: 111 IMLVGNKSDL-RHLRAVPTEEAKA--FAEKNGLSF 142
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+++ +G GVGKSCI+KR+ + +Y T+ D+ V V+++ + V N
Sbjct: 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI----GIDYGVKKVSVRNKEVRV--NFF 54
Query: 71 DMTSH--HRAVHLE------------DVS-----EWLYCELPKLRYVIQSSSFGDEIPIV 111
D++ H + V E DV+ E L L +++ + I +V
Sbjct: 55 DLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVV 114
Query: 112 VAGNKSDMTSHHRAVHLEDVSEW 134
V NK D+T HRAV ++ W
Sbjct: 115 VCANKIDLTK-HRAVSEDEGRLW 136
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIV 205
+ DT G +F +R L FLL +S SFQ++ + EIR+ + PI+
Sbjct: 52 LCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPII 108
Query: 206 VAGNKSDMTSHHRAVHLEDVDIL 228
+ G ++D+ DV++L
Sbjct: 109 LVGTQADLR--------TDVNVL 123
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
I+++++G VGKS +++RF+ ++ Y+ T+
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI 33
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 209 NKSDMTSHHRAVHLEDVD-------ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
++ AV +VD I D G + + + A A LLVY T ES
Sbjct: 27 EPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRES 86
Query: 262 FQSVKCYFEEIREQR 276
V + R
Sbjct: 87 LNEVSRLIAWLPNLR 101
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 14 VILGGQGVGKSCILKRFL---FNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV---VAG 67
V++G GVGKS +L L SD +T + D +V + ++ +V G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRD----PDVYVKELDKGKVKLVLVDTPG 56
Query: 68 --NKSDMTSHHRA----------VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGN 115
+ A + + D ++ E KL + + + IPI++ GN
Sbjct: 57 LDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR--KEGIPIILVGN 114
Query: 116 KSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCG 152
K D+ L + E + V G
Sbjct: 115 KIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEG 151
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
+ DT G +F ++ I + ++VY T +SF + + +++R++R +
Sbjct: 53 LWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN-------- 104
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFR 342
+LV + T L + V EE + + + +E SAK +N+K++F+
Sbjct: 105 -----DVIIVLVGNKTDLSDKRQVS--TEEGEKKAKENNAMFIETSAKAGHNVKQLFK 155
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF---QE 201
V+ D G ++ +R LLVY T +SF+++ + +E++++ +
Sbjct: 51 VNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN 110
Query: 202 IPIVVAGNKSDMTSHHRAV 220
I +VV NK D+T HRAV
Sbjct: 111 IVVVVCANKIDLTK-HRAV 128
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI 58
++++++G GVGKS +L RF +T+ + ST+ DF V VT+
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTI----GVDFKVKTVTV 44
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.003
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 24/122 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-LYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G +G GKS +L + + + D L V T G
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 68 ---------NKSD----MTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+D + L +VS L LP LR G +IP+++ G
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSR-LIAWLPNLR------KLGGKIPVILVG 113
Query: 115 NK 116
NK
Sbjct: 114 NK 115
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 46/156 (29%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
+R+V++G +GVGKS ++ + + + + + +TI +
Sbjct: 3 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE----------ITIP----------A 42
Query: 71 DMTSHHRAVHLEDVS------EWLYCELPK-----LRY-VIQSSSF-------------- 104
D+T + D S L E+ K L Y V + S+
Sbjct: 43 DVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL 102
Query: 105 GDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELP 140
G ++PI++ GNKSD+ LE+ + E
Sbjct: 103 GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR 138
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 28/108 (25%)
Query: 33 NTYSDRYRSTVEDLYSR---DFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89
YS ST+E + ++ V ++PI++ GNKSD+ LE+ +
Sbjct: 78 LVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDGSSQAGLEEEMLPIM 134
Query: 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 137
E ++ ++ S A L +VSE Y
Sbjct: 135 NEFREIETCVECS----------------------AKTLINVSEVFYY 160
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.003
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + ++ + AG +
Sbjct: 2 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQE-- 59
Query: 72 MTSHHRAV---------------HLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNK 116
+ A+ + D+ + L + R I D +P+++ GNK
Sbjct: 60 ---DYAAIRDNYFRSGEGFLLVFSITDMES--FTALAEFREQILRVKEDDNVPLLLVGNK 114
Query: 117 SDMTSHHRAVHLED 130
D+ R V +E+
Sbjct: 115 CDLE-DKRQVSVEE 127
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 53/139 (38%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
I++V++G VGK+C+L + N + Y TV D YS + VT+ + +
Sbjct: 1 IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSAN-----VTVDGKQVNLGLWDT 55
Query: 66 AGNKSDMTSHHRAVHLEDVSEWLYCELPKLRY-----------VIQSSSFGD-------E 107
AG E+ Y L L Y V SSF + E
Sbjct: 56 AGQ-------------EE-----YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE 97
Query: 108 I-------PIVVAGNKSDM 119
I PI++ G K D+
Sbjct: 98 IKHYCPNVPIILVGTKIDL 116
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
A+++VYS T SF+ ++R RQ ++IPI++ GNKSD+ R V ++
Sbjct: 72 VGDAYVIVYSVTDRSSFEKASELRIQLRRARQA-EDIPIILVGNKSDLV-RSREVSVQ 127
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.004
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 220 VHLEDV----DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
V+L+D +I DT G ++ ++ + A A ++VY T ESF+ K + +E++E
Sbjct: 43 VNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEH 102
Query: 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL--ECSAKD 333
+I A L + LES + V EE +E + LL E SAK
Sbjct: 103 GPP---------NIVIA----LAGNKADLESKRQVS--TEEAQEYADENGLLFMETSAKT 147
Query: 334 NYNIKEVF 341
N+ E+F
Sbjct: 148 GENVNELF 155
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI 58
+L+I+G GVGKS +L RF NT+S Y +T+ DF + V I
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEI 50
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+L+++G GVGKSC+L RF ++++ + ST+
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI 36
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 373 | |||
| KOG0084|consensus | 205 | 100.0 | ||
| KOG0092|consensus | 200 | 100.0 | ||
| KOG0078|consensus | 207 | 100.0 | ||
| KOG0394|consensus | 210 | 100.0 | ||
| KOG0094|consensus | 221 | 100.0 | ||
| KOG0098|consensus | 216 | 100.0 | ||
| KOG0080|consensus | 209 | 100.0 | ||
| KOG0079|consensus | 198 | 100.0 | ||
| KOG0091|consensus | 213 | 100.0 | ||
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| KOG0087|consensus | 222 | 100.0 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| KOG0088|consensus | 218 | 100.0 | ||
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0093|consensus | 193 | 99.98 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.98 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.98 | |
| KOG0095|consensus | 213 | 99.98 | ||
| KOG0086|consensus | 214 | 99.97 | ||
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.97 | |
| KOG0393|consensus | 198 | 99.97 | ||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.97 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| KOG0083|consensus | 192 | 99.97 | ||
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.97 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| KOG0395|consensus | 196 | 99.97 | ||
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| KOG0081|consensus | 219 | 99.97 | ||
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.97 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| KOG0097|consensus | 215 | 99.97 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.97 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.96 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.96 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.96 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.96 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.96 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.96 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.96 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.96 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.96 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.96 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.96 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.96 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.96 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.96 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.96 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.96 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.96 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.96 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.96 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.96 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.96 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.96 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.96 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.96 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.96 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.96 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.96 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.96 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.95 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.95 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.95 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.95 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.95 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.95 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.95 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.95 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.95 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.95 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.95 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.95 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.94 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.94 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.94 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.94 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.94 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.94 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.94 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.93 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.93 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.93 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.93 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.93 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.93 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.93 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.93 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.93 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.92 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.92 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.92 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.92 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.92 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.92 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.92 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.92 | |
| KOG4252|consensus | 246 | 99.92 | ||
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.92 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.92 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.91 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.91 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.9 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.9 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.9 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.89 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.89 | |
| PTZ00099 | 176 | rab6; Provisional | 99.88 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.88 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.88 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.88 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.88 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.88 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.86 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.85 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.85 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.84 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.83 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.83 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.83 | |
| KOG0096|consensus | 216 | 99.83 | ||
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.83 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.82 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.82 | |
| KOG1673|consensus | 205 | 99.82 | ||
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.81 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.8 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.8 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.79 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.79 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.78 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.77 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.76 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.76 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.76 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.75 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.75 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.73 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.73 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.73 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.73 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.73 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.73 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.72 | |
| KOG3883|consensus | 198 | 99.72 | ||
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.72 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.71 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.71 | |
| KOG0073|consensus | 185 | 99.71 | ||
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.71 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.7 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.7 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.69 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.69 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.69 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.69 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.69 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.68 | |
| KOG4423|consensus | 229 | 99.68 | ||
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.68 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.66 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.65 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.64 | |
| KOG0070|consensus | 181 | 99.63 | ||
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.62 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.62 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.62 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.61 | |
| KOG1707|consensus | 625 | 99.61 | ||
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.6 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.59 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.57 | |
| KOG0075|consensus | 186 | 99.57 | ||
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.57 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.56 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.55 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.54 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.53 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.53 | |
| KOG0076|consensus | 197 | 99.52 | ||
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.51 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.5 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.5 | |
| KOG0084|consensus | 205 | 99.5 | ||
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.5 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.49 | |
| KOG0071|consensus | 180 | 99.49 | ||
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.48 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.47 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.46 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.46 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.46 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.45 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.45 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.44 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.41 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.39 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.35 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.34 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.34 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.34 | |
| KOG1423|consensus | 379 | 99.34 | ||
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.34 | |
| KOG0092|consensus | 200 | 99.34 | ||
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.33 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.33 | |
| KOG0087|consensus | 222 | 99.33 | ||
| KOG0079|consensus | 198 | 99.32 | ||
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.32 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.32 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.31 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.3 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.3 | |
| KOG0078|consensus | 207 | 99.29 | ||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.29 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.28 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.27 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.27 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.26 | |
| KOG1489|consensus | 366 | 99.25 | ||
| KOG0074|consensus | 185 | 99.24 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.24 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.24 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.23 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.22 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.22 | |
| KOG1191|consensus | 531 | 99.21 | ||
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.21 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.21 | |
| KOG0098|consensus | 216 | 99.21 | ||
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.2 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.2 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.2 | |
| KOG0080|consensus | 209 | 99.2 | ||
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.19 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.19 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.18 | |
| KOG0093|consensus | 193 | 99.18 | ||
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.16 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.15 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.15 | |
| KOG0462|consensus | 650 | 99.14 | ||
| CHL00071 | 409 | tufA elongation factor Tu | 99.14 | |
| KOG0394|consensus | 210 | 99.14 | ||
| KOG0086|consensus | 214 | 99.12 | ||
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.12 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.11 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.11 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.11 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.1 | |
| KOG0072|consensus | 182 | 99.09 | ||
| PRK00007 | 693 | elongation factor G; Reviewed | 99.09 | |
| KOG0393|consensus | 198 | 99.08 | ||
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.08 | |
| KOG0095|consensus | 213 | 99.07 | ||
| PRK12740 | 668 | elongation factor G; Reviewed | 99.07 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.06 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.05 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.05 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.04 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.03 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.03 | |
| KOG0091|consensus | 213 | 99.02 | ||
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.02 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.0 | |
| KOG1145|consensus | 683 | 98.99 | ||
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.98 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 98.97 | |
| KOG0090|consensus | 238 | 98.97 | ||
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.96 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 98.94 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.94 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 98.94 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 98.94 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.94 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 98.93 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.92 | |
| KOG0077|consensus | 193 | 98.91 | ||
| KOG0094|consensus | 221 | 98.9 | ||
| KOG0395|consensus | 196 | 98.89 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 98.89 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 98.89 | |
| PRK13768 | 253 | GTPase; Provisional | 98.87 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.86 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.86 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 98.86 | |
| KOG0705|consensus | 749 | 98.86 | ||
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 98.85 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.84 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 98.84 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.82 | |
| PTZ00099 | 176 | rab6; Provisional | 98.8 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 98.79 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 98.78 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 98.77 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 98.77 | |
| KOG0097|consensus | 215 | 98.76 | ||
| KOG0081|consensus | 219 | 98.75 | ||
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 98.75 | |
| KOG0088|consensus | 218 | 98.73 | ||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.72 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 98.72 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 98.71 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 98.7 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 98.7 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 98.69 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 98.69 | |
| KOG0083|consensus | 192 | 98.68 | ||
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 98.68 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 98.67 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 98.67 | |
| KOG4252|consensus | 246 | 98.65 | ||
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 98.64 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 98.64 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.63 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 98.63 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 98.62 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 98.62 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 98.62 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 98.61 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.61 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 98.61 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.6 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 98.59 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 98.58 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 98.58 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 98.57 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 98.56 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 98.56 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 98.56 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 98.56 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 98.55 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 98.55 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.55 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 98.54 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 98.54 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 98.53 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 98.53 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 98.52 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 98.52 | |
| KOG3886|consensus | 295 | 98.51 | ||
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 98.49 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 98.49 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 98.48 | |
| KOG1707|consensus | 625 | 98.48 | ||
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.47 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 98.47 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 98.46 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 98.46 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 98.45 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 98.45 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.45 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 98.44 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.44 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.44 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 98.43 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 98.43 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 98.42 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 98.42 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 98.42 | |
| KOG1486|consensus | 364 | 98.42 | ||
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 98.4 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.4 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 98.4 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 98.39 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 98.39 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 98.39 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 98.38 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 98.38 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 98.38 | |
| KOG1532|consensus | 366 | 98.38 | ||
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 98.37 | |
| KOG1490|consensus | 620 | 98.37 | ||
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.37 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.36 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.35 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.35 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 98.35 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.34 | |
| PLN03118 | 211 | Rab family protein; Provisional | 98.34 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 98.34 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 98.34 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.33 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 98.32 | |
| KOG3905|consensus | 473 | 98.32 | ||
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 98.3 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.3 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.29 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.29 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 98.29 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 98.28 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.28 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 98.28 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.27 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.27 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.27 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 98.27 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 98.26 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.26 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 98.25 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 98.24 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 98.24 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 98.23 | |
| KOG0096|consensus | 216 | 98.23 | ||
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 98.23 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.22 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.22 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.22 | |
| KOG0468|consensus | 971 | 98.22 | ||
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 98.21 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 98.2 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.2 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 98.2 | |
| KOG1144|consensus | 1064 | 98.2 | ||
| PLN03108 | 210 | Rab family protein; Provisional | 98.2 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 98.18 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 98.18 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 98.17 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 98.17 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 98.17 | |
| KOG3883|consensus | 198 | 98.17 | ||
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 98.14 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.12 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 98.11 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.11 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.1 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.1 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 98.09 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.09 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.05 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.05 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.04 | |
| KOG2486|consensus | 320 | 98.03 | ||
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 98.03 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.01 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.0 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 98.0 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.0 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 97.99 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 97.98 | |
| KOG0070|consensus | 181 | 97.97 | ||
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.96 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 97.94 | |
| KOG0458|consensus | 603 | 97.94 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 97.94 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.92 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 97.91 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.9 | |
| KOG1487|consensus | 358 | 97.9 | ||
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.86 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.84 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.84 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 97.82 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 97.8 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 97.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.77 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.77 | |
| KOG1143|consensus | 591 | 97.76 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.75 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 97.74 | |
| KOG0075|consensus | 186 | 97.73 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.73 | |
| KOG0073|consensus | 185 | 97.73 | ||
| KOG0410|consensus | 410 | 97.64 | ||
| KOG4273|consensus | 418 | 97.64 | ||
| KOG0082|consensus | 354 | 97.63 | ||
| KOG0461|consensus | 522 | 97.62 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.61 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.59 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 97.59 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 97.58 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.57 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 97.54 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 97.53 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 97.53 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 97.52 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.5 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.5 | |
| KOG1491|consensus | 391 | 97.47 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.46 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.45 | |
| KOG0076|consensus | 197 | 97.45 | ||
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.42 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.39 | |
| KOG0071|consensus | 180 | 97.38 |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=268.20 Aligned_cols=167 Identities=29% Similarity=0.448 Sum_probs=149.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...|||+|+|++|||||||+.||..+.|++.|.+|++ |+..|++.+++..++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iK--------------------------- 59 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIK--------------------------- 59 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEE---------------------------
Confidence 3579999999999999999999999999999999999 999999999999999
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+||++|+.+..+||++
T Consensus 60 ----------------------------------------------------------lQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 60 ----------------------------------------------------------LQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred ----------------------------------------------------------EEeeeccccHHHhhhhHhhccC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|+|+|+|||++++.||+++..|+.+++++.. ..+|.+
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~l----------------------------------------- 118 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKL----------------------------------------- 118 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeE-----------------------------------------
Confidence 9999999999999999999999999998753 233444
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe-
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ- 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~- 325 (373)
|||||+|+.+.+.|+.++++.++...++|
T Consensus 119 --------------------------------------------------LVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 119 --------------------------------------------------LVGNKCDLTEKRVVSTEEAQEFADELGIPI 148 (205)
T ss_pred --------------------------------------------------EEeeccccHhheecCHHHHHHHHHhcCCcc
Confidence 55555555666778888999999999999
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
|+|+|||++.||+++|..++...+...
T Consensus 149 f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 149 FLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred eeecccCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998654433
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=262.88 Aligned_cols=163 Identities=28% Similarity=0.459 Sum_probs=148.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|+.|||||||+.||..+.|.+...||++ .|+++++.+++..++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ik--------------------------- 55 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIK--------------------------- 55 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEE---------------------------
Confidence 4579999999999999999999999999998899999 889999999998888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
++||||+|+|+|+++.+.||++
T Consensus 56 ----------------------------------------------------------feIWDTAGQERy~slapMYyRg 77 (200)
T KOG0092|consen 56 ----------------------------------------------------------FEIWDTAGQERYHSLAPMYYRG 77 (200)
T ss_pred ----------------------------------------------------------EEEEEcCCcccccccccceecC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++|+|||+++.+||..++.|..++.+..+ +++.+.|||||+||.+
T Consensus 78 A~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~------------------------------- 124 (200)
T KOG0092|consen 78 ANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLE------------------------------- 124 (200)
T ss_pred CcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhh-------------------------------
Confidence 9999999999999999999999999998753 5666777777777653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.|.|..++++.+|+..|..|
T Consensus 125 ------------------------------------------------------------~R~V~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 125 ------------------------------------------------------------RREVEFEEAQAYAESQGLLF 144 (200)
T ss_pred ------------------------------------------------------------cccccHHHHHHHHHhcCCEE
Confidence 45677888999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
||+|||||.||+++|..|++.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999999954
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=258.35 Aligned_cols=165 Identities=27% Similarity=0.434 Sum_probs=149.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+.||..+.|...+..|++ |+..+++..++..+.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~-------------------------- 62 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIK-------------------------- 62 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEE--------------------------
Confidence 34589999999999999999999999999999999999 999999999998888
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++|||+||++|+.+...||+
T Consensus 63 -----------------------------------------------------------lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 63 -----------------------------------------------------------LQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred -----------------------------------------------------------EEEEEcccchhHHHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|+++++|||+++..||+++..|+..+.+... +.+|++
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~--~~v~~~---------------------------------------- 121 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHAS--DDVVKI---------------------------------------- 121 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC--CCCcEE----------------------------------------
Confidence 99999999999999999999999999988752 244444
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
|||||+|++.+|+|+.+.++.+|..+|++
T Consensus 122 ---------------------------------------------------LvGNK~D~~~~R~V~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 122 ---------------------------------------------------LVGNKCDLEEKRQVSKERGEALAREYGIK 150 (207)
T ss_pred ---------------------------------------------------EeeccccccccccccHHHHHHHHHHhCCe
Confidence 55555555557788889999999999999
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|||||+|.||+|+|..+++.++
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999654
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=251.97 Aligned_cols=173 Identities=23% Similarity=0.414 Sum_probs=149.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+...+||+++|++|||||||+|||+...|...|.+|++ ||.+|++.+++..+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vt-------------------------- 59 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVT-------------------------- 59 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEE--------------------------
Confidence 45579999999999999999999999999999999999 999999999988877
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
++||||+||++|.++...+|+
T Consensus 60 -----------------------------------------------------------lQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 60 -----------------------------------------------------------LQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred -----------------------------------------------------------EEEEecccHHHhhhcccceec
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++|+.++|||+++++||++|..|.+++..+.. ++..-|++|+|||.|+...
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--------------------------- 133 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--------------------------- 133 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC---------------------------
Confidence 99999999999999999999999999987763 2234555555555555431
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+|+|+...++.|++..|
T Consensus 134 --------------------------------------------------------------~~r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 134 --------------------------------------------------------------KSRQVSEKKAQTWCKSKG 151 (210)
T ss_pred --------------------------------------------------------------ccceeeHHHHHHHHHhcC
Confidence 136778888888887775
Q ss_pred -CeEEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 324 -FQLLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 324 -~~~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
+||||+|||.+.||+++|+++++.+.....
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 899999999999999999999998755443
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=251.40 Aligned_cols=164 Identities=26% Similarity=0.469 Sum_probs=147.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|+.+||||||++||+.+.|...|.+|++ ||..+++.+.+..+.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vr--------------------------- 72 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR--------------------------- 72 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEE---------------------------
Confidence 3459999999999999999999999999999999999 999999988888888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
|++|||+|||+|+.+.+.|+++
T Consensus 73 ----------------------------------------------------------LQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 73 ----------------------------------------------------------LQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ----------------------------------------------------------EEEEecccHHHHhhhhhhhccC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+.++|+|||+++..||++...|++.+++.++. .++-
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~vi------------------------------------------- 130 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVI------------------------------------------- 130 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceE-------------------------------------------
Confidence 99999999999999999999999999876531 1122
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
++|||||.||.++|+++.++++..|+.+++.|
T Consensus 131 ------------------------------------------------I~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f 162 (221)
T KOG0094|consen 131 ------------------------------------------------IFLVGNKTDLSDKRQVSIEEGERKAKELNAEF 162 (221)
T ss_pred ------------------------------------------------EEEEcccccccchhhhhHHHHHHHHHHhCcEE
Confidence 23777777777788999999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||++|.||+++|..|+.+.
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhc
Confidence 9999999999999999988754
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=248.49 Aligned_cols=166 Identities=28% Similarity=0.384 Sum_probs=149.2
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccc
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLED 83 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
|+....+|++++|+.|||||||+.||+...|.+.+..|++ |+-.+.+.+++..++
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IK------------------------ 56 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIK------------------------ 56 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEE------------------------
Confidence 3456789999999999999999999999999999999999 998999999999999
Q ss_pred eeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhh
Q psy16673 84 VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLS 163 (373)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~ 163 (373)
|++|||+|++.|++++..|
T Consensus 57 -------------------------------------------------------------lqiwDtaGqe~frsv~~sy 75 (216)
T KOG0098|consen 57 -------------------------------------------------------------LQIWDTAGQESFRSVTRSY 75 (216)
T ss_pred -------------------------------------------------------------EEEEecCCcHHHHHHHHHH
Confidence 9999999999999999999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
|+++.|+++|||+++++||..|..|+.+++.... +++.++
T Consensus 76 Yr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvIm-------------------------------------- 115 (216)
T KOG0098|consen 76 YRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIM-------------------------------------- 115 (216)
T ss_pred hccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEE--------------------------------------
Confidence 9999999999999999999999999999987631 333333
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
|+|||+||+..|.|+.++++.+|++.|
T Consensus 116 -----------------------------------------------------LiGNKsDL~~rR~Vs~EEGeaFA~ehg 142 (216)
T KOG0098|consen 116 -----------------------------------------------------LIGNKSDLEARREVSKEEGEAFAREHG 142 (216)
T ss_pred -----------------------------------------------------EEcchhhhhccccccHHHHHHHHHHcC
Confidence 556666666677889999999999999
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
..|+|+||+|+.||+|+|.......
T Consensus 143 LifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 LIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ceeehhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999888754
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=236.37 Aligned_cols=164 Identities=25% Similarity=0.374 Sum_probs=147.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+.||+.+.|.+....|++ ||-.+.+.+++..++
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~K--------------------------- 61 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLK--------------------------- 61 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEE---------------------------
Confidence 3469999999999999999999999999999888898 999999999999999
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.||||+|||+|+.+.++||++
T Consensus 62 ----------------------------------------------------------laiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 62 ----------------------------------------------------------LAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred ----------------------------------------------------------EEEEeccchHhhhccCHhHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+.|+|+|||++.+++|.++..|+.++.-++. .+++..+
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-n~diikm----------------------------------------- 121 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKELDLYST-NPDIIKM----------------------------------------- 121 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHHHhhcC-CccHhHh-----------------------------------------
Confidence 9999999999999999999999999988763 2344444
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+||||.|.++.|.|+.+++..+|+.+++-|
T Consensus 122 --------------------------------------------------lVgNKiDkes~R~V~reEG~kfAr~h~~LF 151 (209)
T KOG0080|consen 122 --------------------------------------------------LVGNKIDKESERVVDREEGLKFARKHRCLF 151 (209)
T ss_pred --------------------------------------------------hhcccccchhcccccHHHHHHHHHhhCcEE
Confidence 555555555567788999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||||.+||+..|++++...
T Consensus 152 iE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 152 IECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEcchhhhccHHHHHHHHHHHH
Confidence 9999999999999999999854
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=233.84 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=148.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+|.+|+|++|||||||+.||..+.|..+|..|++ |+..|++.+++..+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~Vk----------------------------- 58 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVK----------------------------- 58 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEE-----------------------------
Confidence 46889999999999999999999999999999999 999999999999999
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
++|||++|+|.|+.+...||++.+
T Consensus 59 --------------------------------------------------------LqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 59 --------------------------------------------------------LQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred --------------------------------------------------------EEEeecccHHHHHHHHHHHccCCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||+++.+||.++..|++++++.+ +.+|-++|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLV----------------------------------------- 118 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLV----------------------------------------- 118 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceec-----------------------------------------
Confidence 9999999999999999999999999876 34555554
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
|||+|+.+.|.|..++++.+|...|+.+||
T Consensus 119 --------------------------------------------------GNK~d~~~RrvV~t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 119 --------------------------------------------------GNKNDDPERRVVDTEDARAFALQMGIELFE 148 (198)
T ss_pred --------------------------------------------------ccCCCCccceeeehHHHHHHHHhcCchhee
Confidence 455555555667788999999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+|||.+.|++.+|..|.+++....
T Consensus 149 TSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999886665
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=233.38 Aligned_cols=170 Identities=26% Similarity=0.380 Sum_probs=148.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+|++++||+-||||||+.+|+.+.|++-..||++ |++.|-+.+. +..++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~rik--------------------------- 59 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIK--------------------------- 59 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEE---------------------------
Confidence 468999999999999999999999999999999999 9999988775 55666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+||++|+++..+||++
T Consensus 60 ----------------------------------------------------------lqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 60 ----------------------------------------------------------LQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred ----------------------------------------------------------EEEeeccchHHHHHHHHHHhhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
.-|+++|||++|..||+.++.|+.+.....+.+..+.
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~V------------------------------------------- 118 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVV------------------------------------------- 118 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeE-------------------------------------------
Confidence 9999999999999999999999998776543222233
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
|.|||.|+||.+.|+|+.++++.+|+..|+.|
T Consensus 119 ------------------------------------------------FlLVGhKsDL~SqRqVt~EEaEklAa~hgM~F 150 (213)
T KOG0091|consen 119 ------------------------------------------------FLLVGHKSDLQSQRQVTAEEAEKLAASHGMAF 150 (213)
T ss_pred ------------------------------------------------EEEeccccchhhhccccHHHHHHHHHhcCceE
Confidence 33666666666678899999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
+|||||+|.||+|+|+.+.+.+...-+.
T Consensus 151 VETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 151 VETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred EEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999877554443
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=247.89 Aligned_cols=174 Identities=23% Similarity=0.398 Sum_probs=148.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
++..+||+++|++|||||||++||+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~--------------------------- 54 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE--------------------------- 54 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEE---------------------------
Confidence 45689999999999999999999999999999999999777777877777777
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|++.|..+++.++++
T Consensus 55 ----------------------------------------------------------l~iwDtaG~e~~~~~~~~~~~~ 76 (182)
T cd04172 55 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPD 76 (182)
T ss_pred ----------------------------------------------------------EEEEECCCchhhHhhhhhhcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.||+++ ..|++++.+.. +.+|++|||||+||.+....
T Consensus 77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~-------------------------- 127 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDLTT-------------------------- 127 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhcChhh--------------------------
Confidence 9999999999999999998 78999998865 57999999999999642000
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
..++.. ...+.|+.++++.+|+..++
T Consensus 128 -----------------------~~~~~~------------------------------~~~~~v~~~~~~~~a~~~~~~ 154 (182)
T cd04172 128 -----------------------LVELSN------------------------------HRQTPVSYDQGANMAKQIGAA 154 (182)
T ss_pred -----------------------HHHHHh------------------------------cCCCCCCHHHHHHHHHHcCCC
Confidence 000000 01234678899999999996
Q ss_pred eEEEeccCCCcC-HHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYN-IKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~n-v~elf~~i~~~ 347 (373)
+|+||||++|.| |+++|+.+++.
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHH
Confidence 999999999999 99999999984
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=243.87 Aligned_cols=162 Identities=30% Similarity=0.466 Sum_probs=148.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.-|||+++|++|||||-|+.||+.+.|..+..+|++ ++.++++.+++..++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vk---------------------------- 64 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVK---------------------------- 64 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEE----------------------------
Confidence 478999999999999999999999999999999999 999999999999999
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
.+||||+||++|+++...||++|
T Consensus 65 ---------------------------------------------------------aqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 65 ---------------------------------------------------------AQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ---------------------------------------------------------Eeeecccchhhhccccchhhccc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
.|+++|||++...+|+++..|+.+++.... +++++++||||+||..
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~-------------------------------- 133 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNH-------------------------------- 133 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhh--------------------------------
Confidence 999999999999999999999999998753 5677777777777653
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.|.|..++++.+|+..+..|+
T Consensus 134 -----------------------------------------------------------lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 134 -----------------------------------------------------------LRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred -----------------------------------------------------------ccccchhhhHhHHHhcCceEE
Confidence 345667789999999999999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
|+||.++.||+++|+.++...
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EecccccccHHHHHHHHHHHH
Confidence 999999999999999888743
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=243.70 Aligned_cols=175 Identities=21% Similarity=0.324 Sum_probs=148.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|+.|||||||+.+|..+.|...+.++++ ++..+.+.+++..+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~---------------------------- 56 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVK---------------------------- 56 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEE----------------------------
Confidence 468999999999999999999999999888888876 666677777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|+++|..++..+++++
T Consensus 57 ---------------------------------------------------------l~iwDt~G~~~~~~l~~~~~~~a 79 (189)
T cd04121 57 ---------------------------------------------------------LQLWDTSGQGRFCTIFRSYSRGA 79 (189)
T ss_pred ---------------------------------------------------------EEEEeCCCcHHHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.||+++..|++++.+.. +.+|++|||||+|+..
T Consensus 80 d~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~-------------------------------- 124 (189)
T cd04121 80 QGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAF-------------------------------- 124 (189)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchh--------------------------------
Confidence 99999999999999999999999997654 5788888888888853
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++..+++|+
T Consensus 125 -----------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 125 -----------------------------------------------------------KRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred -----------------------------------------------------------ccCCCHHHHHHHHHHcCCEEE
Confidence 223455678888888999999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccCCCcccccc
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKR 362 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~~~~~~~~~ 362 (373)
||||++|.||+++|+.+++.+.....+.+....++
T Consensus 146 e~SAk~g~~V~~~F~~l~~~i~~~~~~~~~~~~~~ 180 (189)
T cd04121 146 EVSPLCNFNITESFTELARIVLMRHGRPPQSPPQN 180 (189)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 99999999999999999986655444444444443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=241.97 Aligned_cols=170 Identities=27% Similarity=0.443 Sum_probs=145.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+.||+.+.|..++.||+++.+.+.+.+++..+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~------------------------------- 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVN------------------------------- 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEE-------------------------------
Confidence 6999999999999999999999999999999999777777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..++++++++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (176)
T cd04133 51 ------------------------------------------------------LGLWDTAGQEDYNRLRPLSYRGADVF 76 (176)
T ss_pred ------------------------------------------------------EEEEECCCCccccccchhhcCCCcEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.||+++ ..|+.++.... +++|++|||||+|+.+. +....
T Consensus 77 ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~-~~~~~--------------------------- 125 (176)
T cd04133 77 VLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDD-KQYLA--------------------------- 125 (176)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccC-hhhhh---------------------------
Confidence 999999999999998 68999998764 57999999999999641 11000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E 328 (373)
+....+.|+.++++.+++..++ +|+|
T Consensus 126 -----------------------------------------------------~~~~~~~v~~~~~~~~a~~~~~~~~~E 152 (176)
T cd04133 126 -----------------------------------------------------DHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred -----------------------------------------------------hccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 0011234567788999999998 6999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
|||++|.||+++|+.+++.+.
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCcccCHHHHHHHHHHHHh
Confidence 999999999999999999653
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=242.79 Aligned_cols=171 Identities=23% Similarity=0.390 Sum_probs=145.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
++||+++|++|||||||+++|+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIE------------------------------ 50 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999999999998777777777777666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..+++.+++++++
T Consensus 51 -------------------------------------------------------l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (178)
T cd04131 51 -------------------------------------------------------LSLWDTSGSPYYDNVRPLCYPDSDA 75 (178)
T ss_pred -------------------------------------------------------EEEEECCCchhhhhcchhhcCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.||+++ ..|+.++.+.. +.+|+++||||+||.++..
T Consensus 76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~~~~------------------------------ 122 (178)
T cd04131 76 VLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRTDLS------------------------------ 122 (178)
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhcChh------------------------------
Confidence 9999999999999996 78999998875 5799999999999964100
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
.. .++.. ...+.|+.++++.+|+..++ +|+
T Consensus 123 ---------------~~----~~~~~------------------------------~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 123 ---------------TL----MELSH------------------------------QRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred ---------------HH----HHHHh------------------------------cCCCCCCHHHHHHHHHHhCCCEEE
Confidence 00 00100 01234678899999999997 899
Q ss_pred EeccCCCcC-HHHHHHHHHHH
Q psy16673 328 ECSAKDNYN-IKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~n-v~elf~~i~~~ 347 (373)
||||++|+| |+++|..+++.
T Consensus 154 E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 154 ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred ECccCcCCcCHHHHHHHHHHH
Confidence 999999995 99999999995
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=246.94 Aligned_cols=173 Identities=23% Similarity=0.349 Sum_probs=146.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
..+||+++|++|||||||+++|+.+.|...|.||+++.+++.+.+++..+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~----------------------------- 62 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVE----------------------------- 62 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEE-----------------------------
Confidence 478999999999999999999999999999999999777777777777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|++.|..+++.++++++
T Consensus 63 --------------------------------------------------------l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 63 --------------------------------------------------------LSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred --------------------------------------------------------EEEEeCCCchhhHHHHHHHcCCCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 169 AFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
++++|||++++.||+++ ..|+.++.... +.+|+++||||+|+..+....
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~--------------------------- 136 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLSTL--------------------------- 136 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccchh---------------------------
Confidence 99999999999999985 78999998765 578999999999986410000
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QL 326 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~ 326 (373)
.++ .+ ...+.|+.++++.+|+.+++ +|
T Consensus 137 ----------------------~~l--------------------------~~----~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 137 ----------------------MEL--------------------------SN----QKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred ----------------------hhh--------------------------cc----ccCCcCCHHHHHHHHHHcCCCEE
Confidence 000 00 01245678899999999999 69
Q ss_pred EEeccCCCc-CHHHHHHHHHHHh
Q psy16673 327 LECSAKDNY-NIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~-nv~elf~~i~~~~ 348 (373)
|||||++|. ||+++|+.+++..
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHH
Confidence 999999998 8999999999865
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=227.08 Aligned_cols=162 Identities=28% Similarity=0.387 Sum_probs=147.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.-.|||+++|...||||||+-||+.+.|.....+|+. .|.++.+++.+....
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~--------------------------- 63 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRAD--------------------------- 63 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceee---------------------------
Confidence 4479999999999999999999999999999999998 788999999998888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.||||+||++|+++-+.||++
T Consensus 64 ----------------------------------------------------------L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 64 ----------------------------------------------------------LHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred ----------------------------------------------------------eeeeeccchHhhhccCceEEeC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
.+|+++|||+++++||+.++.|..+++.+.+ ..+.
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~------------------------------------------- 120 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIE------------------------------------------- 120 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeE-------------------------------------------
Confidence 9999999999999999999999999998863 1222
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+++||||.||+..|+|+..+++.+|+.-|+.|
T Consensus 121 ------------------------------------------------l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y 152 (218)
T KOG0088|consen 121 ------------------------------------------------LLIVGNKIDLEEERQVTRQEAEAYAESVGALY 152 (218)
T ss_pred ------------------------------------------------EEEecCcccHHHhhhhhHHHHHHHHHhhchhh
Confidence 33677777777788999999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHH
Q psy16673 327 LECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+|||.|.||.++|+.+...
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAK 173 (218)
T ss_pred eecccccccCHHHHHHHHHHH
Confidence 999999999999999988764
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=238.74 Aligned_cols=160 Identities=26% Similarity=0.458 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.|+++|+.|||||||++||+.+.|...+.+|++ +++.+.+.+++..+.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~------------------------------ 50 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIR------------------------------ 50 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEE------------------------------
Confidence 3699999999999999999999999999999988 777778888777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..|++++|+
T Consensus 51 -------------------------------------------------------l~iwDtaGqe~~~~l~~~y~~~ad~ 75 (202)
T cd04120 51 -------------------------------------------------------LQIWDTAGQERFNSITSAYYRSAKG 75 (202)
T ss_pred -------------------------------------------------------EEEEeCCCchhhHHHHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.||+.+..|++.+.... ..++|+++||||+|+..
T Consensus 76 iIlVfDvtd~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~---------------------------------- 119 (202)
T cd04120 76 IILVYDITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCET---------------------------------- 119 (202)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccc----------------------------------
Confidence 999999999999999999999887653 25688888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-CCeEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-~~~~~E 328 (373)
.+.++.++++.+++.. +++|+|
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~~e 142 (202)
T cd04120 120 ---------------------------------------------------------DREISRQQGEKFAQQITGMRFCE 142 (202)
T ss_pred ---------------------------------------------------------ccccCHHHHHHHHHhcCCCEEEE
Confidence 1223445566677664 789999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++..
T Consensus 143 tSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 143 ASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999854
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=237.32 Aligned_cols=172 Identities=25% Similarity=0.478 Sum_probs=144.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVS------------------------------ 52 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEE------------------------------
Confidence 48999999999999999999999999999999999777766677776666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..+++.+++++|+
T Consensus 53 -------------------------------------------------------l~i~Dt~G~e~~~~l~~~~~~~a~~ 77 (191)
T cd01875 53 -------------------------------------------------------LNLWDTAGQEEYDRLRTLSYPQTNV 77 (191)
T ss_pred -------------------------------------------------------EEEEECCCchhhhhhhhhhccCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.||+++. .|+..+.... +++|++|||||+||.+. +..
T Consensus 78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~-~~~---------------------------- 125 (191)
T cd01875 78 FIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRND-ADT---------------------------- 125 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcC-hhh----------------------------
Confidence 99999999999999997 5988887654 57999999999999641 100
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~ 327 (373)
.+.+.. ...+.++.++++.+++..+ ++|+
T Consensus 126 --------------------~~~~~~------------------------------~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 126 --------------------LKKLKE------------------------------QGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred --------------------HHHHhh------------------------------ccCCCCCHHHHHHHHHHcCCcEEE
Confidence 000100 0113346678899999888 6999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999865
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=218.04 Aligned_cols=161 Identities=26% Similarity=0.417 Sum_probs=141.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+|++|+|+..||||||+.||+.+.|...+.+|++ |+-.+++-.+...++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRik---------------------------- 71 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIK---------------------------- 71 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEE----------------------------
Confidence 367999999999999999999999999999999999 887787777777777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|+|+|+.+...||+++
T Consensus 72 ---------------------------------------------------------lQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 72 ---------------------------------------------------------LQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ---------------------------------------------------------EEEEecccchhhhHHHHHHhhcc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+|+|++||+++.+||..++.|...+..++- .++|++
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvi------------------------------------------ 130 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVI------------------------------------------ 130 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEE------------------------------------------
Confidence 999999999999999999999988775531 233333
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
|||||||++++|.++.+.++.+++.+|..||
T Consensus 131 -------------------------------------------------lvgnKCDmd~eRvis~e~g~~l~~~LGfefF 161 (193)
T KOG0093|consen 131 -------------------------------------------------LVGNKCDMDSERVISHERGRQLADQLGFEFF 161 (193)
T ss_pred -------------------------------------------------EEecccCCccceeeeHHHHHHHHHHhChHHh
Confidence 6666666666777788889999999999999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
|+|||.|.||+++|+.++..
T Consensus 162 EtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDI 181 (193)
T ss_pred hhcccccccHHHHHHHHHHH
Confidence 99999999999999999874
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-32 Score=234.21 Aligned_cols=172 Identities=24% Similarity=0.427 Sum_probs=144.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~------------------------------ 50 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT------------------------------ 50 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEE------------------------------
Confidence 37999999999999999999999999999999999777766777666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (175)
T cd01874 51 -------------------------------------------------------LGLFDTAGQEDYDRLRPLSYPQTDV 75 (175)
T ss_pred -------------------------------------------------------EEEEECCCccchhhhhhhhcccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+.+. .|+..+.... +++|+++||||+|+.+. ..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~-~~----------------------------- 122 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD-PS----------------------------- 122 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhC-hh-----------------------------
Confidence 99999999999999997 5998887754 57999999999998641 00
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~ 327 (373)
. ..+......+.|+.++++.+++..+ ++|+
T Consensus 123 -------------------~------------------------------~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~ 153 (175)
T cd01874 123 -------------------T------------------------------IEKLAKNKQKPITPETGEKLARDLKAVKYV 153 (175)
T ss_pred -------------------h------------------------------HHHhhhccCCCcCHHHHHHHHHHhCCcEEE
Confidence 0 0001111235567888999998887 7999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++++
T Consensus 154 e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 154 ECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EecCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999854
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=238.22 Aligned_cols=173 Identities=23% Similarity=0.400 Sum_probs=143.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
++||+|+|++|||||||+++|+.+.|+..|.||+.+.+...+.+++..+.
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~------------------------------ 50 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIE------------------------------ 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999999999999877777777777766
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..+++.+|+++|+
T Consensus 51 -------------------------------------------------------L~iwDt~G~e~~~~l~~~~~~~~d~ 75 (222)
T cd04173 51 -------------------------------------------------------LNMWDTSGSSYYDNVRPLAYPDSDA 75 (222)
T ss_pred -------------------------------------------------------EEEEeCCCcHHHHHHhHHhccCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+++. .|..++.... +++|++|||||+|+..+...
T Consensus 76 illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~----------------------------- 123 (222)
T cd04173 76 VLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLAT----------------------------- 123 (222)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhh-----------------------------
Confidence 99999999999999995 5887776554 68999999999999752000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
...+... . ...|+.++++.+|+..|+ +|+
T Consensus 124 --------------------~~~~~~~---~---------------------------~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 124 --------------------LRELSKQ---R---------------------------LIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred --------------------hhhhhhc---c---------------------------CCccCHHHHHHHHHHcCCCEEE
Confidence 0000000 0 112467789999999995 999
Q ss_pred EeccCCCcC-HHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYN-IKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~n-v~elf~~i~~~~~ 349 (373)
||||++|.| |+++|+.+++.+.
T Consensus 154 E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 154 ECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred EcCCCcCCcCHHHHHHHHHHHHH
Confidence 999999995 9999999999653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=217.02 Aligned_cols=168 Identities=27% Similarity=0.450 Sum_probs=144.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
--|||++||..|||||||+.||+++-||+...+|++ |+..+++.+++..++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekik---------------------------- 57 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIK---------------------------- 57 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEE----------------------------
Confidence 368999999999999999999999999999999999 999999999999999
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
++||||+|+++|+++.++||+.+
T Consensus 58 ---------------------------------------------------------lqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 58 ---------------------------------------------------------LQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred ---------------------------------------------------------EEEeeccchHHHHHHHHHHhhhc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
++++++||++...+|..+.+|+.++..+.. ..+--+
T Consensus 81 halilvydiscqpsfdclpewlreie~yan--~kvlki------------------------------------------ 116 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKI------------------------------------------ 116 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEE------------------------------------------
Confidence 999999999999999999999999998862 233334
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+||||.|+.+.|.|....++.+++....-|+
T Consensus 117 -------------------------------------------------lvgnk~d~~drrevp~qigeefs~~qdmyfl 147 (213)
T KOG0095|consen 117 -------------------------------------------------LVGNKIDLADRREVPQQIGEEFSEAQDMYFL 147 (213)
T ss_pred -------------------------------------------------eeccccchhhhhhhhHHHHHHHHHhhhhhhh
Confidence 4555555555566666777888888778899
Q ss_pred EeccCCCcCHHHHHHHHH-HHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFL-TLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~-~~~~~~~~~ 354 (373)
|+||+...||+.+|..++ ++....+.+
T Consensus 148 etsakea~nve~lf~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 148 ETSAKEADNVEKLFLDLACRLISEARQN 175 (213)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998876 443333333
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=216.38 Aligned_cols=161 Identities=29% Similarity=0.469 Sum_probs=144.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.-+|++++|+.|.|||||+++|+.+.|.+....|++ ++-.|.+++++..++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vK---------------------------- 59 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVK---------------------------- 59 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEE----------------------------
Confidence 468999999999999999999999999999999999 999999999999888
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
++||||+||++|+.....||+++
T Consensus 60 ---------------------------------------------------------LQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 60 ---------------------------------------------------------LQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred ---------------------------------------------------------EEEeecccHHHHHHHHHHHhccc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
-|.++|||++++++|+.+..|+..++.+.. +.+.++++|||.||
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL---------------------------------- 126 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDL---------------------------------- 126 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhc----------------------------------
Confidence 999999999999999999999999987753 45555555555555
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..|+|+-.++..+++...+.|.
T Consensus 127 ---------------------------------------------------------~~~R~VtflEAs~FaqEnel~fl 149 (214)
T KOG0086|consen 127 ---------------------------------------------------------DPEREVTFLEASRFAQENELMFL 149 (214)
T ss_pred ---------------------------------------------------------ChhhhhhHHHHHhhhcccceeee
Confidence 44567777888889999999999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
|+||+||+||+|.|-..++.
T Consensus 150 ETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 150 ETSALTGENVEEAFLKCART 169 (214)
T ss_pred eecccccccHHHHHHHHHHH
Confidence 99999999999999888874
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=227.50 Aligned_cols=162 Identities=29% Similarity=0.445 Sum_probs=139.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 51 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPAL------------------------------ 51 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999999999998777777777776666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..++.++|+
T Consensus 52 -------------------------------------------------------l~i~Dt~G~~~~~~l~~~~~~~~d~ 76 (172)
T cd04141 52 -------------------------------------------------------LDILDTAGQAEFTAMRDQYMRCGEG 76 (172)
T ss_pred -------------------------------------------------------EEEEeCCCchhhHHHhHHHhhcCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.||+.+..|+..+.+... .+++|+++||||+|+.+
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~---------------------------------- 121 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLES---------------------------------- 121 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhh----------------------------------
Confidence 9999999999999999999888876532 24678888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.++.++++.+++..+++|+||
T Consensus 122 ---------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~ 144 (172)
T cd04141 122 ---------------------------------------------------------QRQVTTEEGRNLAREFNCPFFET 144 (172)
T ss_pred ---------------------------------------------------------cCccCHHHHHHHHHHhCCEEEEE
Confidence 12234456677788889999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|+.+++..
T Consensus 145 Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 145 SAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999853
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=229.87 Aligned_cols=178 Identities=29% Similarity=0.507 Sum_probs=155.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+|++|||+++||||+|+..|..+.|+..|.||+.|.|...+.++ +..+.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~---------------------------- 54 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVE---------------------------- 54 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEE----------------------------
Confidence 4689999999999999999999999999999999999999999995 88888
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+||++|..+++..|.++
T Consensus 55 ---------------------------------------------------------L~LwDTAGqedYDrlRplsY~~t 77 (198)
T KOG0393|consen 55 ---------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQT 77 (198)
T ss_pred ---------------------------------------------------------EeeeecCCCcccccccccCCCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|.+++||++.++.||+++.. |+.+++.++ +.+|+++||+|.||+++.
T Consensus 78 dvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~----------------------------- 125 (198)
T KOG0393|consen 78 DVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDP----------------------------- 125 (198)
T ss_pred CEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCH-----------------------------
Confidence 99999999999999999875 999999988 899999999999998531
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-Ce
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQ 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~ 325 (373)
...+.+.+. ....|+.++++.+|+..| +.
T Consensus 126 --------------------~~~~~l~~~------------------------------~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 126 --------------------STLEKLQRQ------------------------------GLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred --------------------HHHHHHHhc------------------------------cCCcccHHHHHHHHHHhCcce
Confidence 011122221 112357889999999999 57
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
|+||||++..|++++|+..++.+...++
T Consensus 156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 156 YLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999998765554
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=247.50 Aligned_cols=301 Identities=16% Similarity=0.073 Sum_probs=213.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEe------------ccCCccchhh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVA------------GNKSDMTSHH 76 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 76 (373)
..|+|||+||||||||+||++ ....+.+.|+ .||+..++...+.+..|.++ +...+.+++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~-----g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT-----GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh-----CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHH
Confidence 479999999999999999999 7889999988 78999999999999999888 2234456777
Q ss_pred hcccccceeeeeeec---cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccc
Q psy16673 77 RAVHLEDVSEWLYCE---LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGD 153 (373)
Q Consensus 77 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~ 153 (373)
.++.+||+++|++|. .+..++.+..+.+..++|++||+||+|.....
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e------------------------------ 128 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE------------------------------ 128 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh------------------------------
Confidence 899999999999995 34557777777778889999999999965221
Q ss_pred cchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHH--HHh-ccC---CCccEE----------------------
Q psy16673 154 LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQR-QDF---QEIPIV---------------------- 205 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~--~~~-~~~---~~~pi~---------------------- 205 (373)
.....||+-+-+=++..+..+...+..+.+++-... ... ... ..+.++
T Consensus 129 ----~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~ 204 (444)
T COG1160 129 ----ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV 204 (444)
T ss_pred ----hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE
Confidence 112222333333344444444444444433222221 000 000 123344
Q ss_pred ----EecccccccccccccccccceeeeccCCCCCc----------hhhh-hccccccEEEEEEecCCccchhhHHHHHH
Q psy16673 206 ----VAGNKSDMTSHHRAVHLEDVDILDTCGDLQFP----------AMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFE 270 (373)
Q Consensus 206 ----ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~----------~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~ 270 (373)
+.||..|..+.........+.+.||||..+-. ..+. .++..++.+++|.|++.+.+-++..-.--
T Consensus 205 Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~ 284 (444)
T COG1160 205 IVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGL 284 (444)
T ss_pred EecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHH
Confidence 44556666555566666778999999965443 3333 47889999999999999998887754222
Q ss_pred HHHhhccCCCCCchhhccccccceeeeeccccccccchhhh-----hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 271 EIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-----CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 271 ~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~-----~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
.. +.++++++|.||||+...+..+ .+....+.+...+|.+.+||++|.++.++|+.+.
T Consensus 285 i~-----------------~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 285 IE-----------------EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred HH-----------------HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 22 2255677999999986653222 2333444455568999999999999999999999
Q ss_pred HHhhhhccCCCccccccccccc
Q psy16673 346 TLSQILTTNGDENSLKRRSSAY 367 (373)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~s~~ 367 (373)
+.+....++..++.+++....+
T Consensus 348 ~~~~~~~~ri~Ts~LN~~l~~a 369 (444)
T COG1160 348 EIYECATRRISTSLLNRVLEDA 369 (444)
T ss_pred HHHHHhccccCHHHHHHHHHHH
Confidence 9999999999999988865544
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=225.63 Aligned_cols=170 Identities=26% Similarity=0.502 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+.||+.+.|+..+.||+.+.+...+.+++..+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN------------------------------- 50 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEE-------------------------------
Confidence 6999999999999999999999999999999998887777777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+|||+|++.|..++..+++++|++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (174)
T cd01871 51 ------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQTDVF 76 (174)
T ss_pred ------------------------------------------------------EEEEECCCchhhhhhhhhhcCCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+. .|+..+.... +++|+++||||+|+.+. +. .
T Consensus 77 ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~-~~-~---------------------------- 123 (174)
T cd01871 77 LICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KD-T---------------------------- 123 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccC-hh-h----------------------------
Confidence 9999999999999996 5988887654 57999999999999641 10 0
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~E 328 (373)
.+ .+.. ...+.|+.++++.+++..+ ++|+|
T Consensus 124 ------------~~-------~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 124 ------------IE-------KLKE------------------------------KKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred ------------HH-------HHhh------------------------------ccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 00 0000 1123467788899999888 49999
Q ss_pred eccCCCcCHHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~ 347 (373)
|||++|.||+++|+.+++.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 9999999999999999873
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=220.94 Aligned_cols=159 Identities=26% Similarity=0.446 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|.+.+.+|++ +++.+.+.+++..+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVR------------------------------ 50 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999988899988 555566666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..+...+++++|+
T Consensus 51 -------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~~ 75 (161)
T cd04117 51 -------------------------------------------------------IQIWDTAGQERYQTITKQYYRRAQG 75 (161)
T ss_pred -------------------------------------------------------EEEEeCCCcHhHHhhHHHHhcCCcE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|++.+.... ..++|+++||||.|+..
T Consensus 76 ~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~---------------------------------- 119 (161)
T cd04117 76 IFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQ---------------------------------- 119 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc----------------------------------
Confidence 999999999999999999999887653 24678888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.++.++++.+++.++++|+||
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~ 142 (161)
T cd04117 120 ---------------------------------------------------------KRQVGDEQGNKLAKEYGMDFFET 142 (161)
T ss_pred ---------------------------------------------------------ccCCCHHHHHHHHHHcCCEEEEE
Confidence 22334556777888888999999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.|+++
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999874
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-32 Score=213.38 Aligned_cols=159 Identities=25% Similarity=0.382 Sum_probs=140.6
Q ss_pred EEEcCCCCChHHHHHHHHhcccC-Cceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 14 VILGGQGVGKSCILKRFLFNTYS-DRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 14 ~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
+++|++++|||||+.||-.+.|. ....+|++ |+..+-+.+++..++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvk-------------------------------- 48 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVK-------------------------------- 48 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEE--------------------------------
Confidence 47899999999999999988886 45688888 888888888888888
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++|||+||++|++....||+++|+.+
T Consensus 49 -----------------------------------------------------lqiwdtagqerfrsvt~ayyrda~all 75 (192)
T KOG0083|consen 49 -----------------------------------------------------LQIWDTAGQERFRSVTHAYYRDADALL 75 (192)
T ss_pred -----------------------------------------------------EEEeeccchHHHhhhhHhhhcccceee
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEEE
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i 251 (373)
++||+.++.||++++.|+.++.++.. ..+.
T Consensus 76 llydiankasfdn~~~wlsei~ey~k--~~v~------------------------------------------------ 105 (192)
T KOG0083|consen 76 LLYDIANKASFDNCQAWLSEIHEYAK--EAVA------------------------------------------------ 105 (192)
T ss_pred eeeecccchhHHHHHHHHHHHHHHHH--hhHh------------------------------------------------
Confidence 99999999999999999999998852 1111
Q ss_pred EEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEecc
Q psy16673 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331 (373)
Q Consensus 252 ~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SA 331 (373)
+.++|||+|+...|.|..++++.+|+..++||+|+||
T Consensus 106 -------------------------------------------l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsa 142 (192)
T KOG0083|consen 106 -------------------------------------------LMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSA 142 (192)
T ss_pred -------------------------------------------HhhhccccccchhhccccchHHHHHHHHCCCceeccc
Confidence 2277777777778888899999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHhhh
Q psy16673 332 KDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 332 ktg~nv~elf~~i~~~~~~ 350 (373)
|||.||+..|..|++..+.
T Consensus 143 ktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 143 KTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cccccHhHHHHHHHHHHHH
Confidence 9999999999999985433
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=220.13 Aligned_cols=161 Identities=26% Similarity=0.425 Sum_probs=136.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIK----------------------------- 52 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEE-----------------------------
Confidence 47999999999999999999999999988888887 555566666666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.|..++..++++++
T Consensus 53 --------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~~ 76 (166)
T cd04122 53 --------------------------------------------------------LQIWDTAGQERFRAVTRSYYRGAA 76 (166)
T ss_pred --------------------------------------------------------EEEEECCCcHHHHHHHHHHhcCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+..... +.+|+++||||+|+..
T Consensus 77 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~--------------------------------- 121 (166)
T cd04122 77 GALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA--------------------------------- 121 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc---------------------------------
Confidence 99999999999999999999998876532 5678888888888764
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.++.++++.+++..+++|+|
T Consensus 122 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd04122 122 ----------------------------------------------------------QRDVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred ----------------------------------------------------------ccCcCHHHHHHHHHHcCCEEEE
Confidence 1222344556677777899999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|..+++.+
T Consensus 144 ~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 144 CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999753
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=223.79 Aligned_cols=164 Identities=32% Similarity=0.529 Sum_probs=139.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.|...+.||+++.+.+.+.+++..+.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 54 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCL---------------------------- 54 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEE----------------------------
Confidence 4579999999999999999999999999988999998777777777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|+++|..++..+++++
T Consensus 55 ---------------------------------------------------------l~i~Dt~G~~~~~~l~~~~~~~~ 77 (189)
T PTZ00369 55 ---------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTG 77 (189)
T ss_pred ---------------------------------------------------------EEEEeCCCCccchhhHHHHhhcC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+.+... .+++|++++|||.|+.+.
T Consensus 78 d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~------------------------------- 125 (189)
T PTZ00369 78 QGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE------------------------------- 125 (189)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc-------------------------------
Confidence 999999999999999999999998876642 257888889999887531
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..+++..+++|+
T Consensus 126 ------------------------------------------------------------~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 126 ------------------------------------------------------------RQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred ------------------------------------------------------------cccCHHHHHHHHHHhCCEEE
Confidence 11223344555666678999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++..
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=226.19 Aligned_cols=167 Identities=34% Similarity=0.519 Sum_probs=147.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
..+||+++|.+|||||+|..||+++.|.+.|.||++|.|.+.+.+++..+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~----------------------------- 52 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCM----------------------------- 52 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEE-----------------------------
Confidence 357999999999999999999999999999999999999999999988888
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.|+||+|+++|..++..++.+++
T Consensus 53 --------------------------------------------------------l~ilDt~g~~~~~~~~~~~~~~~~ 76 (196)
T KOG0395|consen 53 --------------------------------------------------------LEILDTAGQEEFSAMRDLYIRNGD 76 (196)
T ss_pred --------------------------------------------------------EEEEcCCCcccChHHHHHhhccCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
|+++||+++++.||+.+..+++.+.+..+ ...+|+++||||+|+.
T Consensus 77 gF~lVysitd~~SF~~~~~l~~~I~r~~~-~~~~PivlVGNK~Dl~---------------------------------- 121 (196)
T KOG0395|consen 77 GFLLVYSITDRSSFEEAKQLREQILRVKG-RDDVPIILVGNKCDLE---------------------------------- 121 (196)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCCEEEEEEcccch----------------------------------
Confidence 99999999999999999999998855432 2345666666666654
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
..|.|+.++++.+|..++|+|+|
T Consensus 122 ---------------------------------------------------------~~R~V~~eeg~~la~~~~~~f~E 144 (196)
T KOG0395|consen 122 ---------------------------------------------------------RERQVSEEEGKALARSWGCAFIE 144 (196)
T ss_pred ---------------------------------------------------------hccccCHHHHHHHHHhcCCcEEE
Confidence 44677888999999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
|||+.+.||+++|..+++......
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred eeccCCcCHHHHHHHHHHHHHhhh
Confidence 999999999999999999765533
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=217.74 Aligned_cols=119 Identities=36% Similarity=0.643 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.||+.+.+.+.+.+++..+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCM------------------------------- 50 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEE-------------------------------
Confidence 7999999999999999999999999988899988777777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..++++++++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (163)
T cd04136 51 ------------------------------------------------------LEILDTAGTEQFTAMRDLYIKNGQGF 76 (163)
T ss_pred ------------------------------------------------------EEEEECCCccccchHHHHHhhcCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+..|++.+.+... ...+|++++|||+|+.+
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 77 VLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 999999999999999999999887642 25788889999998853
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=214.93 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=143.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+|.+.+|++||||||++.||+.+.|..+..+|++ |+..+.+.++...-++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g---------------------------- 60 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGG---------------------------- 60 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCC----------------------------
Confidence 46889999999999999999999999999999999 8877777664332110
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
.-....|.+++|||+|||+|+++...++++|.
T Consensus 61 ------------------------------------------------~gr~~rihLQlWDTAGQERFRSLTTAFfRDAM 92 (219)
T KOG0081|consen 61 ------------------------------------------------GGRGQRIHLQLWDTAGQERFRSLTTAFFRDAM 92 (219)
T ss_pred ------------------------------------------------CCcceEEEEeeeccccHHHHHHHHHHHHHhhc
Confidence 00112344999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++++||+++..||-++..|+.++..... ..++-
T Consensus 93 GFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PD--------------------------------------------- 126 (219)
T KOG0081|consen 93 GFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPD--------------------------------------------- 126 (219)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCC---------------------------------------------
Confidence 99999999999999999999998875431 12222
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
++++|||+||++.|.|+..++..+|.+.|+||||
T Consensus 127 ----------------------------------------------ivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 127 ----------------------------------------------IVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred ----------------------------------------------EEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 4466777777777888999999999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~ 350 (373)
+||.||.||++..+.++.++..
T Consensus 161 TSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=216.29 Aligned_cols=159 Identities=29% Similarity=0.566 Sum_probs=143.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
||+++|++|||||||+++|.++.|++.+.+|++ +.+.+.+.+++..+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------- 49 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVN------------------------------- 49 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEE-------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccc-------------------------------
Confidence 799999999999999999999999999999995 888888888888887
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|++.|..++..+++++|++
T Consensus 50 ------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (162)
T PF00071_consen 50 ------------------------------------------------------LEIWDTSGQERFDSLRDIFYRNSDAI 75 (162)
T ss_dssp ------------------------------------------------------EEEEEETTSGGGHHHHHHHHTTESEE
T ss_pred ------------------------------------------------------cccccccccccccccccccccccccc
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.||+.+..|+..+..... ..+|++++|||+|+.+
T Consensus 76 ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~----------------------------------- 118 (162)
T PF00071_consen 76 IIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD----------------------------------- 118 (162)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG-----------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccceeeeccccccc-----------------------------------
Confidence 999999999999999999999998863 3688888888888763
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+.++.++++.+++.++++|+|||
T Consensus 119 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~S 142 (162)
T PF00071_consen 119 --------------------------------------------------------EREVSVEEAQEFAKELGVPYFEVS 142 (162)
T ss_dssp --------------------------------------------------------GSSSCHHHHHHHHHHTTSEEEEEB
T ss_pred --------------------------------------------------------cccchhhHHHHHHHHhCCEEEEEE
Confidence 233456678889999999999999
Q ss_pred cCCCcCHHHHHHHHHHHh
Q psy16673 331 AKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~ 348 (373)
|++|.||.++|..+++.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=222.77 Aligned_cols=167 Identities=29% Similarity=0.500 Sum_probs=138.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|+.+.|...+.+|+++.+.+.+.+++..+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCM-------------------------------- 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEE--------------------------------
Confidence 699999999999999999999999988999998777666666666666
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++|||+|+++|..++..+++++|+++
T Consensus 49 -----------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (190)
T cd04144 49 -----------------------------------------------------LEVLDTAGQEEYTALRDQWIREGEGFI 75 (190)
T ss_pred -----------------------------------------------------EEEEECCCchhhHHHHHHHHHhCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
+|||++++.+|+.+..|+..+...... ...+|+++||||+|+..
T Consensus 76 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~----------------------------------- 120 (190)
T cd04144 76 LVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY----------------------------------- 120 (190)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-----------------------------------
Confidence 999999999999999999988776421 24677777888887753
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+.+...+++.++...+++|+|||
T Consensus 121 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~S 144 (190)
T cd04144 121 --------------------------------------------------------EREVSTEEGAALARRLGCEFIEAS 144 (190)
T ss_pred --------------------------------------------------------cCccCHHHHHHHHHHhCCEEEEec
Confidence 122233445666777789999999
Q ss_pred cCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 331 AKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~~~~~~~ 354 (373)
|++|.||+++|+.+++......+.
T Consensus 145 Ak~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 145 AKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999865443333
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=220.87 Aligned_cols=164 Identities=20% Similarity=0.387 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++||+++.|...+.||++ +++.+.+.+++..+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~------------------------------ 50 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEIT------------------------------ 50 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999999999998 677778888777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++++
T Consensus 51 -------------------------------------------------------l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (182)
T cd04128 51 -------------------------------------------------------FSIWDLGGQREFINMLPLVCNDAVA 75 (182)
T ss_pred -------------------------------------------------------EEEEeCCCchhHHHhhHHHCcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+++..|++.+..... ..+| ++||||+|+..+. ...
T Consensus 76 iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~---~~~-------------------------- 123 (182)
T cd04128 76 ILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADL---PPE-------------------------- 123 (182)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccc---cch--------------------------
Confidence 9999999999999999999999887642 3466 5789999986310 000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
..+. ..++++.+++..+++|+||
T Consensus 124 --------------------------------------------------------~~~~-~~~~~~~~a~~~~~~~~e~ 146 (182)
T cd04128 124 --------------------------------------------------------EQEE-ITKQARKYAKAMKAPLIFC 146 (182)
T ss_pred --------------------------------------------------------hhhh-hHHHHHHHHHHcCCEEEEE
Confidence 0000 1235667788888999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|+.+++.+
T Consensus 147 SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 147 STSHSINVQKIFKIVLAKA 165 (182)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999754
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=225.20 Aligned_cols=126 Identities=20% Similarity=0.322 Sum_probs=97.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~ 223 (373)
+++|||+|++. .++..+++++|++++|||++++.||+++. .|++.+.... +.+|+++||||+||..........
T Consensus 68 l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~ 142 (195)
T cd01873 68 LRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNR 142 (195)
T ss_pred EEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhh
Confidence 99999999976 35677899999999999999999999997 5999887764 578999999999996410000000
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
. ..| +.+.
T Consensus 143 ---------------------------------------------------~----~~~---------------~~~~-- 150 (195)
T cd01873 143 ---------------------------------------------------A----RRP---------------LARP-- 150 (195)
T ss_pred ---------------------------------------------------c----ccc---------------cccc--
Confidence 0 000 0000
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
....+.|+.++++.+|+.+|++|+||||++|.||+++|+.++++
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 01235678889999999999999999999999999999999974
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=203.56 Aligned_cols=163 Identities=25% Similarity=0.368 Sum_probs=145.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...||-+|+|+.|||||||+.+|+...|......|++ ++-+|.+.+.+..++
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkik--------------------------- 61 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK--------------------------- 61 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEE---------------------------
Confidence 3478999999999999999999999999999999999 888999999998888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
++||||+|+++|+....+||++
T Consensus 62 ----------------------------------------------------------lqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 62 ----------------------------------------------------------LQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred ----------------------------------------------------------EEEeecccHHHHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+-+.+.|||++.+.+++.+..|+...+.... ++..
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltn--pnt~------------------------------------------- 118 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTV------------------------------------------- 118 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceE-------------------------------------------
Confidence 9999999999999999999999987665421 2222
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
++++|||.||+..|.|+.++++.+++..|..|
T Consensus 119 ------------------------------------------------i~lignkadle~qrdv~yeeak~faeengl~f 150 (215)
T KOG0097|consen 119 ------------------------------------------------IFLIGNKADLESQRDVTYEEAKEFAEENGLMF 150 (215)
T ss_pred ------------------------------------------------EEEecchhhhhhcccCcHHHHHHHHhhcCeEE
Confidence 34777777777788899999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+|||||.||++.|-+.++..
T Consensus 151 le~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 151 LEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred EEecccccCcHHHHHHHHHHHH
Confidence 9999999999999998888754
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=222.62 Aligned_cols=171 Identities=26% Similarity=0.430 Sum_probs=139.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|..+.|+..+.||+.+.+.+.+.+++..+.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~-------------------------------- 49 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIE-------------------------------- 49 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEE--------------------------------
Confidence 899999999999999999999999999999998777666666665556
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++||++|++.|..++..++.++++++
T Consensus 50 -----------------------------------------------------l~i~Dt~G~~~~~~l~~~~~~~a~~~i 76 (189)
T cd04134 50 -----------------------------------------------------LSLWDTAGQEEFDRLRSLSYADTDVIM 76 (189)
T ss_pred -----------------------------------------------------EEEEECCCChhccccccccccCCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 172 LVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
+|||++++.+|+.+. .|+..+.... +++|+++||||+|+... +....
T Consensus 77 lv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~-~~~~~---------------------------- 124 (189)
T cd04134 77 LCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA-RNERD---------------------------- 124 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC-hhhHH----------------------------
Confidence 999999999999997 5999888654 57999999999999752 11000
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEEEe
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLLEC 329 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~ 329 (373)
.+.+ ...+.++.+++..++...+ ++|+||
T Consensus 125 --------------------~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 125 --------------------DLQR------------------------------YGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred --------------------HHhh------------------------------ccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 0000 0111234556677777666 799999
Q ss_pred ccCCCcCHHHHHHHHHHHhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~ 349 (373)
||++|.||+++|+.+++.+.
T Consensus 155 SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=216.26 Aligned_cols=161 Identities=37% Similarity=0.587 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.|++...+.+.+..+...+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICT------------------------------- 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEE-------------------------------
Confidence 7999999999999999999999999988889888666555555554445
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..++.+++++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (165)
T cd04140 51 ------------------------------------------------------LQITDTTGSHQFPAMQRLSISKGHAF 76 (165)
T ss_pred ------------------------------------------------------EEEEECCCCCcchHHHHHHhhcCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccC-CCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~-~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+..|++.+.+..... +++|+++||||+|+..
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~---------------------------------- 122 (165)
T cd04140 77 ILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH---------------------------------- 122 (165)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc----------------------------------
Confidence 99999999999999999998888765322 5688888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..+++..++..++++|+||
T Consensus 123 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~ 145 (165)
T cd04140 123 ---------------------------------------------------------KREVSSNEGAACATEWNCAFMET 145 (165)
T ss_pred ---------------------------------------------------------cCeecHHHHHHHHHHhCCcEEEe
Confidence 11122334455666678899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.|+.+
T Consensus 146 SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 146 SAKTNHNVQELFQELLNL 163 (165)
T ss_pred ecCCCCCHHHHHHHHHhc
Confidence 999999999999999875
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=223.84 Aligned_cols=164 Identities=21% Similarity=0.381 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+++.|...+.+|++ +++.+.+.++ +..+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~----------------------------- 51 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVR----------------------------- 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEE-----------------------------
Confidence 5899999999999999999999999998999988 6666666665 55555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|++.|..++..++++++
T Consensus 52 --------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~a~ 75 (201)
T cd04107 52 --------------------------------------------------------LQLWDIAGQERFGGMTRVYYRGAV 75 (201)
T ss_pred --------------------------------------------------------EEEEECCCchhhhhhHHHHhCCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++|||++++.+|+.+..|+..+..... ....+|+++||||+|+..
T Consensus 76 ~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~------------------------------- 124 (201)
T cd04107 76 GAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK------------------------------- 124 (201)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-------------------------------
Confidence 99999999999999999999998876431 124577777777777752
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-Ce
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQ 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~ 325 (373)
.+.+..++.+.+++..+ ++
T Consensus 125 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 144 (201)
T cd04107 125 ------------------------------------------------------------RLAKDGEQMDQFCKENGFIG 144 (201)
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCce
Confidence 12233445566666777 68
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+||||++|.||+++|+.+++.+..
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999986633
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=215.39 Aligned_cols=120 Identities=35% Similarity=0.652 Sum_probs=106.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCM------------------------------ 50 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEE------------------------------
Confidence 36999999999999999999999999988899998777677777666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (164)
T cd04175 51 -------------------------------------------------------LEILDTAGTEQFTAMRDLYMKNGQG 75 (164)
T ss_pred -------------------------------------------------------EEEEECCCcccchhHHHHHHhhCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+++..+|+.+..|+..+.... ...++|++++|||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 76 FVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchh
Confidence 999999999999999999999987654 235789999999999864
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=224.32 Aligned_cols=163 Identities=23% Similarity=0.364 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecc-eEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGA-VTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+++.|...+.+|++ |++.+.+.+++ ..+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~----------------------------- 51 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVT----------------------------- 51 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEE-----------------------------
Confidence 5899999999999999999999999999999998 77777777654 3444
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|++.|..+...+++++|
T Consensus 52 --------------------------------------------------------~~i~Dt~G~~~~~~l~~~~~~~ad 75 (215)
T cd04109 52 --------------------------------------------------------LQVWDIGGQSIGGKMLDKYIYGAH 75 (215)
T ss_pred --------------------------------------------------------EEEEECCCcHHHHHHHHHHhhcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
++++|||++++.+|+.+..|+..+.+.... ...+|+++||||+|+..
T Consensus 76 ~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-------------------------------- 123 (215)
T cd04109 76 AVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-------------------------------- 123 (215)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc--------------------------------
Confidence 999999999999999999999999876532 23456777777777642
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++..+++++
T Consensus 124 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 124 -----------------------------------------------------------NRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred -----------------------------------------------------------ccccCHHHHHHHHHHcCCEEE
Confidence 233345566777777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|||++|.||+++|+.+++...
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998653
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=217.85 Aligned_cols=173 Identities=21% Similarity=0.334 Sum_probs=135.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|..+.|.+.+.+|++ ++....+.+.......
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--------------------------- 55 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGG--------------------------- 55 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccc---------------------------
Confidence 468999999999999999999999999999889887 5544444443211100
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
.......+.+++||++|+++|..++..+++++
T Consensus 56 ------------------------------------------------~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (180)
T cd04127 56 ------------------------------------------------TLGRGQRIHLQLWDTAGQERFRSLTTAFFRDA 87 (180)
T ss_pred ------------------------------------------------cccCCCEEEEEEEeCCChHHHHHHHHHHhCCC
Confidence 00001223499999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|..+..|+..+..... .+.+|+++||||+|+.+
T Consensus 88 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~-------------------------------- 134 (180)
T cd04127 88 MGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED-------------------------------- 134 (180)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh--------------------------------
Confidence 999999999999999999999999876532 24678888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++..+++|+
T Consensus 135 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 135 -----------------------------------------------------------QRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred -----------------------------------------------------------cCccCHHHHHHHHHHcCCeEE
Confidence 122234456777777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.|++++|+.+++.+
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=225.64 Aligned_cols=121 Identities=26% Similarity=0.492 Sum_probs=107.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+...+||+++|++|||||||+++|+.+.|...+.+|++ +++...+..++..+.
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~-------------------------- 63 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR-------------------------- 63 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEE--------------------------
Confidence 36689999999999999999999999999999999997 666666655555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 64 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 84 (219)
T PLN03071 64 -----------------------------------------------------------FYCWDTAGQEKFGGLRDGYYI 84 (219)
T ss_pred -----------------------------------------------------------EEEEECCCchhhhhhhHHHcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++++|||++++.+|+.+..|+..+.+.. +++|+++||||+|+.+
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhh
Confidence 9999999999999999999999999998764 5799999999999863
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=214.16 Aligned_cols=120 Identities=35% Similarity=0.675 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+|+.+++...+.+++..+.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSV------------------------------ 50 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999998889888777777777776666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (163)
T cd04176 51 -------------------------------------------------------LEILDTAGTEQFASMRDLYIKNGQG 75 (163)
T ss_pred -------------------------------------------------------EEEEECCCcccccchHHHHHhhCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+|+++..|+..+.+... ..++|+++||||+|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 76 FIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 9999999999999999999998887642 25788999999999753
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-29 Score=215.16 Aligned_cols=165 Identities=20% Similarity=0.376 Sum_probs=137.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
||+++|++|||||||++||+++.|...|.||++ ++..+.+.+++..+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------- 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFS------------------------------- 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE-------------------------------
Confidence 799999999999999999999999999999998 555667777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..+++++|++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~~ 76 (170)
T cd04108 51 ------------------------------------------------------LQLWDTAGQERFKCIASTYYRGAQAI 76 (170)
T ss_pred ------------------------------------------------------EEEEeCCChHHHHhhHHHHhcCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.+|+.+..|+.++.+... ...+|+++||||+|+.+. +..
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~-~~~------------------------------ 124 (170)
T cd04108 77 IIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP-AQY------------------------------ 124 (170)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc-ccc------------------------------
Confidence 999999999999999999999866532 135788999999998541 000
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+..++++.+++..+++|+|||
T Consensus 125 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~e~S 146 (170)
T cd04108 125 ----------------------------------------------------------ALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred ----------------------------------------------------------cccHHHHHHHHHHcCCeEEEEE
Confidence 0122345566667788999999
Q ss_pred cCCCcCHHHHHHHHHHHhhhh
Q psy16673 331 AKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~~~~ 351 (373)
|++|.||+++|+.+++++..+
T Consensus 147 a~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 147 ALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999977443
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=213.08 Aligned_cols=162 Identities=30% Similarity=0.469 Sum_probs=137.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|...+.++++ ++..+.+.+++..+.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 53 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIK---------------------------- 53 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEE----------------------------
Confidence 358999999999999999999999999999999888 555566666666566
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++.|..++..+++++
T Consensus 54 ---------------------------------------------------------l~l~D~~g~~~~~~~~~~~~~~a 76 (167)
T cd01867 54 ---------------------------------------------------------LQIWDTAGQERFRTITTAYYRGA 76 (167)
T ss_pred ---------------------------------------------------------EEEEeCCchHHHHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+.+.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~------------------------------- 123 (167)
T cd01867 77 MGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEK------------------------------- 123 (167)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc-------------------------------
Confidence 99999999999999999999999988753 257889999999998641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..++..++++|+
T Consensus 124 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 124 ------------------------------------------------------------RVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred ------------------------------------------------------------cCCCHHHHHHHHHHcCCEEE
Confidence 11122344556667788999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++..
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=210.53 Aligned_cols=120 Identities=34% Similarity=0.652 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+|..+.+.+.+.+++..+.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL------------------------------ 50 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEE------------------------------
Confidence 37999999999999999999999999988999988777766666665555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..++..+++++++
T Consensus 51 -------------------------------------------------------~~i~Dt~G~~~~~~l~~~~~~~~~~ 75 (162)
T cd04138 51 -------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTGEG 75 (162)
T ss_pred -------------------------------------------------------EEEEECCCCcchHHHHHHHHhcCCE
Confidence 8999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+|+.+..|+..+.+.. ....+|+++||||+|+..
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 76 FLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 999999999999999999999888764 225789999999999863
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=212.38 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+.+|+.+.|.+.+.|+ ...+.+.+.+++..+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~------------------------------- 48 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHL------------------------------- 48 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEE-------------------------------
Confidence 48999999999999999999999998877665 4344567777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|++. ..+++++|++
T Consensus 49 ------------------------------------------------------l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 49 ------------------------------------------------------LLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred ------------------------------------------------------EEEEECCCCCc-----hhHHhcCCEE
Confidence 99999999975 2457889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.||+++..|++++.... ..+.+|+++||||.|+...
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~---------------------------------- 114 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISES---------------------------------- 114 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhc----------------------------------
Confidence 99999999999999999999998764 2256889999999887420
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-CCeEEEe
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQLLEC 329 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-~~~~~E~ 329 (373)
..+.++.++++.+++.. +++|+||
T Consensus 115 -------------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~ 139 (158)
T cd04103 115 -------------------------------------------------------NPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred -------------------------------------------------------CCcccCHHHHHHHHHHhCCCcEEEE
Confidence 11234555677777665 5899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.+++.
T Consensus 140 SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 140 CATYGLNVERVFQEAAQK 157 (158)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999999863
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=211.98 Aligned_cols=159 Identities=27% Similarity=0.487 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+++.|...+.++++ ++..+.+..++..+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVK------------------------------ 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 7999999999999999999999999888888887 454555555555455
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..++..+++++++
T Consensus 52 -------------------------------------------------------~~l~Dt~g~~~~~~~~~~~~~~~~~ 76 (165)
T cd01865 52 -------------------------------------------------------LQIWDTAGQERYRTITTAYYRGAMG 76 (165)
T ss_pred -------------------------------------------------------EEEEECCChHHHHHHHHHHccCCcE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.... ...+|+++||||+|+.+.
T Consensus 77 ~l~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~--------------------------------- 121 (165)
T cd01865 77 FILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDE--------------------------------- 121 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcc---------------------------------
Confidence 999999999999999999999987654 246788888888888641
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
+.+..+.++.+++..+++|+||
T Consensus 122 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01865 122 ----------------------------------------------------------RVVSSERGRQLADQLGFEFFEA 143 (165)
T ss_pred ----------------------------------------------------------cccCHHHHHHHHHHcCCEEEEE
Confidence 1112234455666778899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.|++++|+.+++.
T Consensus 144 Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 144 SAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999874
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=216.75 Aligned_cols=169 Identities=25% Similarity=0.418 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|+..+.+++.+.+.+.+... +..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~------------------------------ 50 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIE------------------------------ 50 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEE------------------------------
Confidence 48999999999999999999999999888898886555555544 44444
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|+++|..+++.++.++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (187)
T cd04132 51 -------------------------------------------------------LALWDTAGQEEYDRLRPLSYPDVDV 75 (187)
T ss_pred -------------------------------------------------------EEEEECCCchhHHHHHHHhCCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+.+. .|+..+.... +++|+++||||+|+... +.
T Consensus 76 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~----------------------------- 122 (187)
T cd04132 76 LLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKD-KN----------------------------- 122 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhC-cc-----------------------------
Confidence 99999999999999996 4988876553 57899999999998641 00
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
..+.+..++++.++...++ +|+
T Consensus 123 ---------------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 123 ---------------------------------------------------------LDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred ---------------------------------------------------------ccCCcCHHHHHHHHHHcCCcEEE
Confidence 0012344566777888887 999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
||||++|.||+++|+.+++.+.....+
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999976544433
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-29 Score=221.93 Aligned_cols=175 Identities=26% Similarity=0.378 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|.. +.+|++ +++.+.. ..+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~------------------------------ 45 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYN------------------------------ 45 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEE------------------------------
Confidence 589999999999999999999999975 567776 4333221 2233
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|++.|..++..+++++++
T Consensus 46 -------------------------------------------------------l~iwDt~G~e~~~~l~~~~~~~ad~ 70 (220)
T cd04126 46 -------------------------------------------------------ISIWDTAGREQFHGLGSMYCRGAAA 70 (220)
T ss_pred -------------------------------------------------------EEEEeCCCcccchhhHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+++..|+..+.+.. ...+|++|||||+|+.++......+ +
T Consensus 71 ~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~~~~~~~~~--------~----------------- 123 (220)
T cd04126 71 VILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTEEGALAGQE--------K----------------- 123 (220)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccccccccccc--------c-----------------
Confidence 999999999999999999888877653 2579999999999997521110000 0
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC------
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD------ 323 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~------ 323 (373)
.+. + .+. ....|.|+.++++.+|+..+
T Consensus 124 --------------------------~~~-~----------------~~~----~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 124 --------------------------DAG-D----------------RVS----PEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred --------------------------ccc-c----------------ccc----ccccccCCHHHHHHHHHHhCcccccc
Confidence 000 0 000 01235677788888887766
Q ss_pred --------CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 324 --------FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 324 --------~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++||||||++|.||+++|..+++.+.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998664
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=210.66 Aligned_cols=162 Identities=26% Similarity=0.487 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+++.|...+.++++ ++..+.+..++..+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVR------------------------------ 50 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEE------------------------------
Confidence 5899999999999999999999999999999988 555566666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..++..+++++++
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (168)
T cd04119 51 -------------------------------------------------------VNFFDLSGHPEYLEVRNEFYKDTQG 75 (168)
T ss_pred -------------------------------------------------------EEEEECCccHHHHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhcc---CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQD---FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~---~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+++|||++++.+|+.+..|+.++.+.... ...+|+++||||+|+.+
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------------------------- 124 (168)
T cd04119 76 VLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK------------------------------- 124 (168)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-------------------------------
Confidence 99999999999999999999999876532 23577777777777752
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++.+.++...+++|
T Consensus 125 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04119 125 ------------------------------------------------------------HRAVSEDEGRLWAESKGFKY 144 (168)
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCeE
Confidence 12223344555666778899
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.|++++|+.+++.+
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999853
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=209.28 Aligned_cols=121 Identities=35% Similarity=0.611 Sum_probs=105.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 51 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAI----------------------------- 51 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEE-----------------------------
Confidence 358999999999999999999999999888888888776666666665555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|+++|..++..+++++|
T Consensus 52 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~ 75 (164)
T cd04145 52 --------------------------------------------------------LDILDTAGQEEFSAMREQYMRTGE 75 (164)
T ss_pred --------------------------------------------------------EEEEECCCCcchhHHHHHHHhhCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.+|+.+..|+..+.+... ...+|++++|||+|+..
T Consensus 76 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 76 GFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 99999999999999999999998877542 24688999999999864
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=209.67 Aligned_cols=161 Identities=35% Similarity=0.547 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 49 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCL------------------------------- 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999988888888777776666666555
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..+++.++++
T Consensus 50 ------------------------------------------------------l~i~Dt~g~~~~~~~~~~~~~~~~~~ 75 (164)
T smart00173 50 ------------------------------------------------------LDILDTAGQEEFSAMRDQYMRTGEGF 75 (164)
T ss_pred ------------------------------------------------------EEEEECCCcccchHHHHHHHhhCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.+|+.+..|+..+.+... ..+.|+++||||+|+...
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~---------------------------------- 120 (164)
T smart00173 76 LLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESE---------------------------------- 120 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc----------------------------------
Confidence 999999999999999999988876542 246788888888887641
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
+.+..++++.+++..+++|++||
T Consensus 121 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T smart00173 121 ---------------------------------------------------------RVVSTEEGKELARQWGCPFLETS 143 (164)
T ss_pred ---------------------------------------------------------ceEcHHHHHHHHHHcCCEEEEee
Confidence 11122344555666778999999
Q ss_pred cCCCcCHHHHHHHHHHHh
Q psy16673 331 AKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~ 348 (373)
|++|.|++++|+.+++..
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999999754
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=210.24 Aligned_cols=161 Identities=32% Similarity=0.499 Sum_probs=136.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK----------------------------- 52 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 47999999999999999999999999888888877 566677776666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|+++|..++..+++++|
T Consensus 53 --------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~~ 76 (166)
T cd01869 53 --------------------------------------------------------LQIWDTAGQERFRTITSSYYRGAH 76 (166)
T ss_pred --------------------------------------------------------EEEEECCCcHhHHHHHHHHhCcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|..+..|+..+.... .+..|++++|||+|+..
T Consensus 77 ~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~--------------------------------- 121 (166)
T cd01869 77 GIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD--------------------------------- 121 (166)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc---------------------------------
Confidence 9999999999999999999999988764 24678888888888753
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++++.+++..+++|+|
T Consensus 122 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T cd01869 122 ----------------------------------------------------------KRVVDYSEAQEFADELGIPFLE 143 (166)
T ss_pred ----------------------------------------------------------ccCCCHHHHHHHHHHcCCeEEE
Confidence 1112334556677778899999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++..
T Consensus 144 ~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 144 TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EECCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=216.64 Aligned_cols=162 Identities=31% Similarity=0.472 Sum_probs=137.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 56 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVK---------------------------- 56 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEE----------------------------
Confidence 478999999999999999999999999888888887 566666666666566
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..++..+++++
T Consensus 57 ---------------------------------------------------------l~l~D~~G~~~~~~~~~~~~~~a 79 (199)
T cd04110 57 ---------------------------------------------------------LQIWDTAGQERFRTITSTYYRGT 79 (199)
T ss_pred ---------------------------------------------------------EEEEeCCCchhHHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|++.+.... +.+|+++||||+|+...
T Consensus 80 ~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~------------------------------- 125 (199)
T cd04110 80 HGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPER------------------------------- 125 (199)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc-------------------------------
Confidence 99999999999999999999999987754 57889999999998641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..++...+++||
T Consensus 126 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 126 ------------------------------------------------------------KVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred ------------------------------------------------------------cccCHHHHHHHHHHcCCEEE
Confidence 11123344556666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
||||++|.||+++|+.+++.+.
T Consensus 146 e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 146 ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred EEECCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999763
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=218.66 Aligned_cols=163 Identities=29% Similarity=0.438 Sum_probs=135.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+||+++|++|||||||+++|+++.|...+.+|++ +++.+.+.+. +..+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~---------------------------- 53 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIK---------------------------- 53 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEE----------------------------
Confidence 58999999999999999999999999888888887 6666666653 33444
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|++.|..+...+++++
T Consensus 54 ---------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~ 76 (211)
T cd04111 54 ---------------------------------------------------------LQLWDTAGQERFRSITRSYYRNS 76 (211)
T ss_pred ---------------------------------------------------------EEEEeCCcchhHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+++..|+..+.+... ...+|++++|||+|+..
T Consensus 77 d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~-------------------------------- 123 (211)
T cd04111 77 VGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLES-------------------------------- 123 (211)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEcccccc--------------------------------
Confidence 999999999999999999999998876542 23567778888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++.++++|+
T Consensus 124 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 124 -----------------------------------------------------------QRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred -----------------------------------------------------------ccccCHHHHHHHHHHhCCEEE
Confidence 122344456677777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
||||++|.||+++|+.|++...
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998653
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=214.53 Aligned_cols=181 Identities=30% Similarity=0.475 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCC-ceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+.+.|.. .+.+|++ ++..+.+.+++..+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 51 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVK----------------------------- 51 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEE-----------------------------
Confidence 589999999999999999999998864 5677776 555556666666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|+++|..++..+++++|
T Consensus 52 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ad 75 (191)
T cd04112 52 --------------------------------------------------------LQIWDTAGQERFRSVTHAYYRDAH 75 (191)
T ss_pred --------------------------------------------------------EEEEeCCCcHHHHHhhHHHccCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+++..|+..+.+... ..+|+++||||+|+...
T Consensus 76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~-------------------------------- 121 (191)
T cd04112 76 ALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGE-------------------------------- 121 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhc--------------------------------
Confidence 99999999999999999999999887642 46889999999998531
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.+..++++.++..++++|+|
T Consensus 122 -----------------------------------------------------------~~~~~~~~~~l~~~~~~~~~e 142 (191)
T cd04112 122 -----------------------------------------------------------RVVKREDGERLAKEYGVPFME 142 (191)
T ss_pred -----------------------------------------------------------cccCHHHHHHHHHHcCCeEEE
Confidence 112233456666777899999
Q ss_pred eccCCCcCHHHHHHHHHHHhhhhccCCCcccccccccccccc
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVNK 370 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 370 (373)
|||++|.||+++|+.+++.+...+. ......+.+.+.|.+.
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 183 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKELKHRKY-EQPDEGKFKISDYVTK 183 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcc-ccCCCCcEEeccccCc
Confidence 9999999999999999986644332 2333334346555543
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=212.35 Aligned_cols=169 Identities=28% Similarity=0.522 Sum_probs=140.3
Q ss_pred EEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecc
Q psy16673 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL 92 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
|+|+|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 47 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVE--------------------------------- 47 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEE---------------------------------
Confidence 68999999999999999999999998889888777777777766666
Q ss_pred ccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEE
Q psy16673 93 PKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLL 172 (373)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 172 (373)
+.+|||+|++.|..++..++.++|++++
T Consensus 48 ----------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 48 ----------------------------------------------------LGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred ----------------------------------------------------EEEEECCCCcccchhchhhcCCCCEEEE
Confidence 9999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEEE
Q psy16673 173 VYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251 (373)
Q Consensus 173 v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i 251 (373)
|||++++.+|+.+. .|+..+.... +.+|+++||||+|+... +..
T Consensus 76 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~-~~~------------------------------- 120 (174)
T smart00174 76 CFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED-KST------------------------------- 120 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC-hhh-------------------------------
Confidence 99999999999996 5999888754 68999999999999741 000
Q ss_pred EEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEEec
Q psy16673 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLECS 330 (373)
Q Consensus 252 ~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~S 330 (373)
. +.+.. ...+.++.++++.+++..++ +|+|||
T Consensus 121 ----------~-------~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 121 ----------L-------RELSK------------------------------QKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred ----------h-------hhhhc------------------------------ccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 0 00000 11233567788889998986 999999
Q ss_pred cCCCcCHHHHHHHHHHHh
Q psy16673 331 AKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~ 348 (373)
|++|.||+++|+.+++.+
T Consensus 154 a~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 154 ALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999864
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=207.99 Aligned_cols=157 Identities=26% Similarity=0.512 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec--ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG--AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+. +..+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---------------------------- 52 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVR---------------------------- 52 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEE----------------------------
Confidence 4899999999999999999999999888888887 4444444443 33333
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|+++|..++..+++++
T Consensus 53 ---------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~ 75 (162)
T cd04106 53 ---------------------------------------------------------LMLWDTAGQEEFDAITKAYYRGA 75 (162)
T ss_pred ---------------------------------------------------------EEEeeCCchHHHHHhHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+.... ..+|+++||||+|+...
T Consensus 76 ~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~------------------------------- 121 (162)
T cd04106 76 QACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQ------------------------------- 121 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccc-------------------------------
Confidence 99999999999999999999999887654 57889999999998641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.++.++++.+++..+++|+
T Consensus 122 ------------------------------------------------------------~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 122 ------------------------------------------------------------AVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred ------------------------------------------------------------cCCCHHHHHHHHHHcCCeEE
Confidence 11233455667777889999
Q ss_pred EeccCCCcCHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~ 346 (373)
||||++|.|++++|+.+..
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999999976
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=207.33 Aligned_cols=116 Identities=35% Similarity=0.601 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|.+.+.++.. +.+.....+++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTIL------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999887777766 455555555555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (161)
T cd04124 51 -------------------------------------------------------VDFWDTAGQERFQTMHASYYHKAHA 75 (161)
T ss_pred -------------------------------------------------------EEEEeCCCchhhhhhhHHHhCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+.+.. +++|++++|||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 76 CILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 999999999999999999999997654 578999999999984
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=216.23 Aligned_cols=111 Identities=24% Similarity=0.492 Sum_probs=101.5
Q ss_pred EcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecccc
Q psy16673 16 LGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPK 94 (373)
Q Consensus 16 vG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
+|++|||||||++||+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~----------------------------------- 45 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIR----------------------------------- 45 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEE-----------------------------------
Confidence 69999999999999999999988999997 677777777776666
Q ss_pred chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEEEE
Q psy16673 95 LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVY 174 (373)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 174 (373)
+.+|||+|+++|..++..++++++++++||
T Consensus 46 --------------------------------------------------l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~ 75 (200)
T smart00176 46 --------------------------------------------------FNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 75 (200)
T ss_pred --------------------------------------------------EEEEECCCchhhhhhhHHHhcCCCEEEEEE
Confidence 999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 175 STTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 175 dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
|++++.||+.+..|+.++.+.. +.+|+++||||+|+.
T Consensus 76 D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 76 DVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred ECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 9999999999999999998865 579999999999985
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=208.60 Aligned_cols=123 Identities=25% Similarity=0.475 Sum_probs=104.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+...+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 55 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT-------------------------- 55 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEE--------------------------
Confidence 34579999999999999999999999999888888877 555666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++||++|+++|..++..+++
T Consensus 56 -----------------------------------------------------------l~i~D~~G~~~~~~~~~~~~~ 76 (170)
T cd04116 56 -----------------------------------------------------------LQIWDTAGQERFRSLRTPFYR 76 (170)
T ss_pred -----------------------------------------------------------EEEEeCCChHHHHHhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEeccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMT 214 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~ 214 (373)
++|++++|||++++.+|+.+..|+.++...... ...+|++++|||+|+.
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999999999999999999999988765421 2457888888888874
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=212.17 Aligned_cols=169 Identities=26% Similarity=0.443 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|.++.|...+.+|..+.+...+.+++..+.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 49 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVR------------------------------- 49 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999999999988888777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|++.|..++..+++++|++
T Consensus 50 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~a~~~ 75 (173)
T cd04130 50 ------------------------------------------------------LQLCDTAGQDEFDKLRPLCYPDTDVF 75 (173)
T ss_pred ------------------------------------------------------EEEEECCCChhhccccccccCCCcEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+. .|+..+.... +++|++++|||+|+... ...
T Consensus 76 i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~----------------------------- 122 (173)
T cd04130 76 LLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTD-VNV----------------------------- 122 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccC-hhH-----------------------------
Confidence 9999999999999985 6998887643 57999999999998641 000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E 328 (373)
...+. -...+.|+.++++.+++..++ +|+|
T Consensus 123 -------------------~~~~~------------------------------~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 123 -------------------LIQLA------------------------------RYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred -------------------HHHHh------------------------------hcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 00000 012345667788889998887 8999
Q ss_pred eccCCCcCHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~ 346 (373)
|||++|.||+++|+.++.
T Consensus 154 ~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 154 CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 999999999999999875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=212.08 Aligned_cols=161 Identities=31% Similarity=0.483 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIK------------------------------ 50 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888888887 555566666666555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..++.++|+
T Consensus 51 -------------------------------------------------------~~i~Dt~g~~~~~~~~~~~~~~~d~ 75 (188)
T cd04125 51 -------------------------------------------------------LQIWDTNGQERFRSLNNSYYRGAHG 75 (188)
T ss_pred -------------------------------------------------------EEEEECCCcHHHHhhHHHHccCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+.++..... ..+|++++|||+|+.+
T Consensus 76 iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~---------------------------------- 119 (188)
T cd04125 76 YLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVN---------------------------------- 119 (188)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcc----------------------------------
Confidence 9999999999999999999999887642 4578888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.+++..+++|+||
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ev 142 (188)
T cd04125 120 ---------------------------------------------------------NKVVDSNIAKSFCDSLNIPFFET 142 (188)
T ss_pred ---------------------------------------------------------cccCCHHHHHHHHHHcCCeEEEE
Confidence 11223345566677778899999
Q ss_pred ccCCCcCHHHHHHHHHHHhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~ 349 (373)
||++|.|++++|+.+++.+.
T Consensus 143 Sa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 143 SAKQSINVEEAFILLVKLII 162 (188)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999753
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=208.41 Aligned_cols=116 Identities=26% Similarity=0.523 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++....+..++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIR------------------------------ 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888888887 555555555555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|++.+..++..++.++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (166)
T cd00877 51 -------------------------------------------------------FNVWDTAGQEKFGGLRDGYYIGGQC 75 (166)
T ss_pred -------------------------------------------------------EEEEECCCChhhccccHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+.+.. .++|+++||||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~ 117 (166)
T cd00877 76 AIIMFDVTSRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhcc
Confidence 999999999999999999999998875 389999999999986
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=208.61 Aligned_cols=162 Identities=28% Similarity=0.491 Sum_probs=136.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|+..+.++++ +++.+.+.+++..+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIK----------------------------- 52 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEE-----------------------------
Confidence 47999999999999999999999999988888887 666667777666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-HhHHhhhhhc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP-AMRRLSIATA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~-~~~~~~~~~~ 167 (373)
+++||++|++.|. .+...+++++
T Consensus 53 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~ 76 (170)
T cd04115 53 --------------------------------------------------------VQLWDTAGQERFRKSMVQHYYRNV 76 (170)
T ss_pred --------------------------------------------------------EEEEeCCChHHHHHhhHHHhhcCC
Confidence 9999999999887 5788889999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|++.+..... ..++|+++||||+|+..
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~-------------------------------- 123 (170)
T cd04115 77 HAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLRE-------------------------------- 123 (170)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchh--------------------------------
Confidence 999999999999999999999999887642 24688888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.+++..+++|+
T Consensus 124 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 124 -----------------------------------------------------------QIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred -----------------------------------------------------------hcCCCHHHHHHHHHHcCCcEE
Confidence 222344566777777889999
Q ss_pred EeccCC---CcCHHHHHHHHHHHh
Q psy16673 328 ECSAKD---NYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAkt---g~nv~elf~~i~~~~ 348 (373)
||||++ +.||+++|..+++.+
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHHHHh
Confidence 999999 999999999999754
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=220.57 Aligned_cols=119 Identities=41% Similarity=0.683 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+++.|...+.+|+++++.+.+.+++..+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~------------------------------- 49 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQ------------------------------- 49 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999999999999888888888777777
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|++.|..++..++.++|++
T Consensus 50 ------------------------------------------------------l~I~Dt~G~~~~~~~~~~~~~~ad~i 75 (247)
T cd04143 50 ------------------------------------------------------LDILDTSGNHPFPAMRRLSILTGDVF 75 (247)
T ss_pred ------------------------------------------------------EEEEECCCChhhhHHHHHHhccCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhc-------cCCCccEEEeccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQ-------DFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~-------~~~~~pi~ivgnK~Dl~ 214 (373)
++|||++++.||+.+..|++++..... ...++|++++|||+|+.
T Consensus 76 IlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 76 ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 999999999999999999999876521 12457777777777775
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=205.86 Aligned_cols=119 Identities=33% Similarity=0.558 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+..++..+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 53 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIK----------------------------- 53 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE-----------------------------
Confidence 57999999999999999999999999888888887 666777777666566
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|+++|..+...++.+++
T Consensus 54 --------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~~ 77 (165)
T cd01868 54 --------------------------------------------------------AQIWDTAGQERYRAITSAYYRGAV 77 (165)
T ss_pred --------------------------------------------------------EEEEeCCChHHHHHHHHHHHCCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 78 GALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 122 (165)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 99999999999999999999999887642 3588888899988764
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=213.03 Aligned_cols=163 Identities=27% Similarity=0.406 Sum_probs=136.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~--------------------------- 56 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIK--------------------------- 56 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEE---------------------------
Confidence 4569999999999999999999999999888888877 555556666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|++.|..++..++++
T Consensus 57 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 78 (210)
T PLN03108 57 ----------------------------------------------------------LQIWDTAGQESFRSITRSYYRG 78 (210)
T ss_pred ----------------------------------------------------------EEEEeCCCcHHHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+.... .+.+|++++|||+|+..
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~------------------------------- 125 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH------------------------------- 125 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCcc-------------------------------
Confidence 999999999999999999999998876553 24678888888888753
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.++.++++.+++.++++|
T Consensus 126 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 145 (210)
T PLN03108 126 ------------------------------------------------------------RRAVSTEEGEQFAKEHGLIF 145 (210)
T ss_pred ------------------------------------------------------------ccCCCHHHHHHHHHHcCCEE
Confidence 22234456677777888999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.||+++|+.+++.+
T Consensus 146 ~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 146 MEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999855
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=214.55 Aligned_cols=163 Identities=31% Similarity=0.476 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|...+.+|++ ++..+.+.+++..+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~---------------------------- 62 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK---------------------------- 62 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEE----------------------------
Confidence 468999999999999999999999999888888887 677777877777666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|+++|..++..+++++
T Consensus 63 ---------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~~ 85 (216)
T PLN03110 63 ---------------------------------------------------------AQIWDTAGQERYRAITSAYYRGA 85 (216)
T ss_pred ---------------------------------------------------------EEEEECCCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+..... .++|+++||||+|+..
T Consensus 86 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~-------------------------------- 131 (216)
T PLN03110 86 VGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNH-------------------------------- 131 (216)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccc--------------------------------
Confidence 999999999999999999999998877642 4688888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.++...+++|+
T Consensus 132 -----------------------------------------------------------~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 132 -----------------------------------------------------------LRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred -----------------------------------------------------------ccCCCHHHHHHHHHHcCCEEE
Confidence 122234455667777789999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
||||++|.|++++|+.+++.+.
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988653
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=237.84 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=138.6
Q ss_pred eeeeccccccc--------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc-
Q psy16673 145 VDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS- 215 (373)
Q Consensus 145 ~~i~D~~g~~~--------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~- 215 (373)
+.+|||+|.+. +......++..+|++++|||+++..++.. ..|...++. ...|+++|+||+|+..
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERG 161 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCcc
Confidence 88999999763 33445667889999999999998766543 344444443 4689999999999853
Q ss_pred ------------------------------------------------------------------------ccc-----
Q psy16673 216 ------------------------------------------------------------------------HHR----- 218 (373)
Q Consensus 216 ------------------------------------------------------------------------~~r----- 218 (373)
..+
T Consensus 162 ~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 162 EADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred chhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 000
Q ss_pred -------------ccccccceeeeccCC----------CCCchhhh-hccccccEEEEEEecCCccchhhHHHHHHHHHh
Q psy16673 219 -------------AVHLEDVDILDTCGD----------LQFPAMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274 (373)
Q Consensus 219 -------------~~~~~~~~~~dtag~----------~~~~~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~ 274 (373)
......+.++||+|. +.|..++. .+++.++++++|||++++.+++++.. ...+..
T Consensus 242 ~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~~ 320 (472)
T PRK03003 242 VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRV-LSMVIE 320 (472)
T ss_pred CCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 001112478999995 33444443 36889999999999999999988753 333322
Q ss_pred hccCCCCCchhhccccccceeeeeccccccccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 275 QRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 275 ~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
.+.| +|+|+||||+.... .+..+..+.++....+|+++|||++|.||+++|+.+.+.+...
T Consensus 321 ----~~~p------------iIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 321 ----AGRA------------LVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ----cCCC------------EEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 2344 55999999996432 2233333445555568999999999999999999999998888
Q ss_pred ccCCCcccccc
Q psy16673 352 TTNGDENSLKR 362 (373)
Q Consensus 352 ~~~~~~~~~~~ 362 (373)
.++.+++.+++
T Consensus 385 ~~~i~t~~ln~ 395 (472)
T PRK03003 385 DTRIPTGRLNA 395 (472)
T ss_pred cccCCHHHHHH
Confidence 88887777654
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=211.57 Aligned_cols=120 Identities=33% Similarity=0.551 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+|+|++|||||||+++|+.+.|+..+.|++. +++.+.+.+++..+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~------------------------------ 50 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYD------------------------------ 50 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEE------------------------------
Confidence 5899999999999999999999999998999987 566666666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh--------HhHH
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP--------AMRR 161 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~--------~~~~ 161 (373)
+++|||+|.+.|. ....
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~e~~~~~~ 75 (198)
T cd04142 51 -------------------------------------------------------LHILDVPNMQRYPGTAGQEWMDPRF 75 (198)
T ss_pred -------------------------------------------------------EEEEeCCCcccCCccchhHHHHHHH
Confidence 9999999976542 1234
Q ss_pred hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccccccc
Q psy16673 162 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 162 ~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~Dl~~ 215 (373)
.++..+|++++|||++++.||+.+..|++.+.+... ....+|+++||||+|+..
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 457899999999999999999999999998877642 235789999999999864
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-28 Score=208.72 Aligned_cols=171 Identities=24% Similarity=0.442 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 49 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL------------------------------- 49 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999988889988777777777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|++.|..++..+++++|++
T Consensus 50 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~~~ 75 (174)
T cd04135 50 ------------------------------------------------------LGLYDTAGQEDYDRLRPLSYPMTDVF 75 (174)
T ss_pred ------------------------------------------------------EEEEeCCCcccccccccccCCCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+. .|+..+.... +..|++++|||+|+.+...
T Consensus 76 ilv~~~~~~~s~~~~~~~~~~~l~~~~---~~~piivv~nK~Dl~~~~~------------------------------- 121 (174)
T cd04135 76 LICFSVVNPASFQNVKEEWVPELKEYA---PNVPYLLVGTQIDLRDDPK------------------------------- 121 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeEchhhhcChh-------------------------------
Confidence 9999999999999996 5888887652 6899999999999864200
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E 328 (373)
+. ..+.. ...+.++.++++.+++..++ +|+|
T Consensus 122 -----------~~-------~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 122 -----------TL-------ARLND------------------------------MKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred -----------hH-------HHHhh------------------------------ccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 00 00000 01234566788888888886 7999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++.+
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999853
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=203.98 Aligned_cols=161 Identities=28% Similarity=0.437 Sum_probs=134.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++++.+.|...+.++.+ ++.+..+..++..+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIK----------------------------- 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 48999999999999999999999988887777776 555566666665555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+++|..+...+++.+|
T Consensus 55 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~d 78 (168)
T cd01866 55 --------------------------------------------------------LQIWDTAGQESFRSITRSYYRGAA 78 (168)
T ss_pred --------------------------------------------------------EEEEECCCcHHHHHHHHHHhccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+..... +.+|+++||||.|+...
T Consensus 79 ~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~-------------------------------- 124 (168)
T cd01866 79 GALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESR-------------------------------- 124 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc--------------------------------
Confidence 99999999999999999999999987642 57899999999998631
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.++.++++.++...+++|+|
T Consensus 125 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 125 -----------------------------------------------------------REVSYEEGEAFAKEHGLIFME 145 (168)
T ss_pred -----------------------------------------------------------cCCCHHHHHHHHHHcCCEEEE
Confidence 111233445556667889999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|..+++.+
T Consensus 146 ~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 146 TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998854
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=202.69 Aligned_cols=159 Identities=29% Similarity=0.467 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++++++.|...+.++.+ ++....+.+++..+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVK------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888888877 555566666655555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~l~D~~G~~~~~~~~~~~~~~~~~ 75 (161)
T cd04113 51 -------------------------------------------------------LQIWDTAGQERFRSVTRSYYRGAAG 75 (161)
T ss_pred -------------------------------------------------------EEEEECcchHHHHHhHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.... .+++|++++|||.|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~---------------------------------- 119 (161)
T cd04113 76 ALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLAD---------------------------------- 119 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcch----------------------------------
Confidence 999999999999999999999887654 25788888999988863
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..+++..++...+++|+||
T Consensus 120 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd04113 120 ---------------------------------------------------------QREVTFLEASRFAQENGLLFLET 142 (161)
T ss_pred ---------------------------------------------------------hccCCHHHHHHHHHHcCCEEEEE
Confidence 11123344556666778899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.|++++|+.+++.
T Consensus 143 Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 143 SALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999873
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=203.43 Aligned_cols=119 Identities=36% Similarity=0.640 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|.++.|...+.+++.+.+.+.+.+++..+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCD------------------------------- 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEE-------------------------------
Confidence 7999999999999999999999999988899988777777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|+++|..++..++++++++
T Consensus 51 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (168)
T cd04177 51 ------------------------------------------------------LEILDTAGTEQFTAMRELYIKSGQGF 76 (168)
T ss_pred ------------------------------------------------------EEEEeCCCcccchhhhHHHHhhCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+..|...+.+.. ...+.|++++|||.|+..
T Consensus 77 vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 77 LLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLED 120 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccc
Confidence 99999999999999999999887653 235788888999998764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=207.94 Aligned_cols=164 Identities=24% Similarity=0.417 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCC-ceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+++.|.. .+.+|++ ++..+.+.+++..+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 51 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVT----------------------------- 51 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEE-----------------------------
Confidence 489999999999999999999999974 6788887 445667777777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|+++|..++..+++++|
T Consensus 52 --------------------------------------------------------l~i~D~~G~~~~~~~~~~~~~~~d 75 (193)
T cd04118 52 --------------------------------------------------------LGIWDTAGSERYEAMSRIYYRGAK 75 (193)
T ss_pred --------------------------------------------------------EEEEECCCchhhhhhhHhhcCCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|++.+.... +.+|+++||||+|+......
T Consensus 76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~----------------------------- 123 (193)
T cd04118 76 AAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRS----------------------------- 123 (193)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccc-----------------------------
Confidence 9999999999999999999999987653 57899999999998641000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++.+.++...++++++
T Consensus 124 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~ 145 (193)
T cd04118 124 ----------------------------------------------------------LRQVDFHDVQDFADEIKAQHFE 145 (193)
T ss_pred ----------------------------------------------------------cCccCHHHHHHHHHHcCCeEEE
Confidence 0112223445566677889999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
+||++|.||+++|+.+++.+.
T Consensus 146 ~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 146 TSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998763
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=202.48 Aligned_cols=120 Identities=26% Similarity=0.523 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|..+.|...+.++.+ ++..+.+.+++..+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 53 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVK---------------------------- 53 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEE----------------------------
Confidence 358999999999999999999999999888888876 555666666665555
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..++..+++.+
T Consensus 54 ---------------------------------------------------------l~i~D~~G~~~~~~~~~~~~~~~ 76 (165)
T cd01864 54 ---------------------------------------------------------LQIWDTAGQERFRTITQSYYRSA 76 (165)
T ss_pred ---------------------------------------------------------EEEEECCChHHHHHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+..
T Consensus 77 d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 77 NGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 99999999999999999999999997653 25788999999999864
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=203.21 Aligned_cols=161 Identities=32% Similarity=0.511 Sum_probs=130.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|+.+.|.+.+.++....+.+...+++..+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 48 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVS-------------------------------- 48 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEE--------------------------------
Confidence 699999999999999999999999888888887666666666666666
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc-hhHhHHhhhhhcCeE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ-FPAMRRLSIATAHAF 170 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~-~~~~~~~~~~~~~~~ 170 (373)
+++||++|++. +......+++++|++
T Consensus 49 -----------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~d~~ 75 (165)
T cd04146 49 -----------------------------------------------------LEILDTAGQQQADTEQLERSIRWADGF 75 (165)
T ss_pred -----------------------------------------------------EEEEECCCCcccccchHHHHHHhCCEE
Confidence 99999999985 344566788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.+|+.+..|+..+........++|+++||||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----------------------------------- 120 (165)
T cd04146 76 VLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH----------------------------------- 120 (165)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-----------------------------------
Confidence 999999999999999999998887642124678888888888753
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+.++.++++.+++..+++|+|||
T Consensus 121 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~S 144 (165)
T cd04146 121 --------------------------------------------------------YRQVSTEEGEKLASELGCLFFEVS 144 (165)
T ss_pred --------------------------------------------------------hCccCHHHHHHHHHHcCCEEEEeC
Confidence 122334456667777889999999
Q ss_pred cCCCc-CHHHHHHHHHHHh
Q psy16673 331 AKDNY-NIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~-nv~elf~~i~~~~ 348 (373)
|++|. ||+++|+.+++..
T Consensus 145 a~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 145 AAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCchhHHHHHHHHHHHH
Confidence 99995 9999999999853
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=201.05 Aligned_cols=117 Identities=25% Similarity=0.475 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc--ccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+||+++|++|||||||++++..+ .|++.+.++++ +++.+.+.++ +..+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--------------------------- 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVE--------------------------- 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEE---------------------------
Confidence 58999999999999999999865 78888888887 6655555554 23344
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 54 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 75 (164)
T cd04101 54 ----------------------------------------------------------LFIFDSAGQELYSDMVSNYWES 75 (164)
T ss_pred ----------------------------------------------------------EEEEECCCHHHHHHHHHHHhCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|++.+.... ..+|+++||||+|+.+
T Consensus 76 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 76 PSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 999999999999999999999999988764 5689999999999864
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=210.83 Aligned_cols=164 Identities=25% Similarity=0.377 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccC-Cceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+.+.|. ..+.++.+ +++.+.+.+++..+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~----------------------------- 51 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEEST----------------------------- 51 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEE-----------------------------
Confidence 58999999999999999999989887 77778876 777788887776666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh-hc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA-TA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~-~~ 167 (373)
+.+||++|++ ..+...++. ++
T Consensus 52 --------------------------------------------------------l~i~Dt~G~~--~~~~~~~~~~~a 73 (221)
T cd04148 52 --------------------------------------------------------LVVIDHWEQE--MWTEDSCMQYQG 73 (221)
T ss_pred --------------------------------------------------------EEEEeCCCcc--hHHHhHHhhcCC
Confidence 9999999998 334555666 99
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+..
T Consensus 74 d~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~-------------------------------- 120 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLAR-------------------------------- 120 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccc--------------------------------
Confidence 99999999999999999999999887653 124678888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.++...+++|+
T Consensus 121 -----------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 121 -----------------------------------------------------------SREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred -----------------------------------------------------------cceecHHHHHHHHHHcCCeEE
Confidence 122334455667777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
||||++|.||+++|+.+++.+...+.
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQIRLRRD 167 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999997755443
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=203.02 Aligned_cols=172 Identities=25% Similarity=0.424 Sum_probs=137.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.||+++|++|||||||+++|.++.|+..+.|++.+.+...+.+++..+.
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVE------------------------------ 50 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEE------------------------------
Confidence 36899999999999999999999999998999988766666666666566
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|++.|..++..++.++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 51 -------------------------------------------------------LALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred -------------------------------------------------------EEEEeCCCchhhhhccccccCCCCE
Confidence 9999999999999888888999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+.+. .|+..+.... .+.|+++||||+|+... .....
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~------------------------- 125 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND--EHTRR------------------------- 125 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC--hhhhh-------------------------
Confidence 99999999999999996 5888887653 57999999999998641 00000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
.+. ....+.+...+++.++...+. +|+
T Consensus 126 ----------------------~i~------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~ 153 (175)
T cd01870 126 ----------------------ELA------------------------------KMKQEPVKPEEGRDMANKIGAFGYM 153 (175)
T ss_pred ----------------------hhh------------------------------hccCCCccHHHHHHHHHHcCCcEEE
Confidence 000 001122345567777777764 899
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 154 ~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 154 ECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EeccccCcCHHHHHHHHHHHh
Confidence 999999999999999999754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=204.39 Aligned_cols=176 Identities=24% Similarity=0.439 Sum_probs=138.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.||+|+|++|||||||+++|..+.|+..+.+++.+.+...+.+++..+.
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQ------------------------------ 50 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEE------------------------------
Confidence 46999999999999999999999999888888877665555555555444
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|....+.+++++++
T Consensus 51 -------------------------------------------------------l~i~Dt~g~~~~~~~~~~~~~~a~~ 75 (187)
T cd04129 51 -------------------------------------------------------LALWDTAGQEEYERLRPLSYSKAHV 75 (187)
T ss_pred -------------------------------------------------------EEEEECCCChhccccchhhcCCCCE
Confidence 8999999999988887788899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++||+++.++|+.+. .|++.+.... +++|+++||||+|+.++ ....+
T Consensus 76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~--~~~~~------------------------- 125 (187)
T cd04129 76 ILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQD--AVAKE------------------------- 125 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhC--ccccc-------------------------
Confidence 99999999999999997 5999887654 57999999999998641 00000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
+....+.++.++++.+++..++ +||
T Consensus 126 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 126 ------------------------------------------------------EYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred ------------------------------------------------------ccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 0011223345567778888884 899
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
||||++|.||+++|+.+++.+...++.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 999999999999999999866444443
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=201.57 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccC-Cceecceec-ceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVED-LYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
++.+||+++|++|||||||++||+.+.|. ..+.||+++ +..+.+.+++..+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~-------------------------- 55 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKY-------------------------- 55 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEE--------------------------
Confidence 45789999999999999999999999998 889999884 44455666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..++..++.
T Consensus 56 -----------------------------------------------------------l~~~d~~g~~~~~~~~~~~~~ 76 (169)
T cd01892 56 -----------------------------------------------------------LILREVGEDEVAILLNDAELA 76 (169)
T ss_pred -----------------------------------------------------------EEEEecCCcccccccchhhhh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+... ..+|+++||||+|+.+
T Consensus 77 ~~d~~llv~d~~~~~s~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 77 ACDVACLVYDSSDPKSFSYCAEVYKKYFML----GEIPCLFVAAKADLDE 122 (169)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHhccC----CCCeEEEEEEcccccc
Confidence 999999999999999999999998865322 4689999999999864
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=194.48 Aligned_cols=117 Identities=30% Similarity=0.634 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++++++..|...+.++.+ ++..+.+.+++..+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVR------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEE------------------------------
Confidence 4899999999999999999999999888888877 666677766665555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..+...++.++++
T Consensus 51 -------------------------------------------------------l~~~D~~G~~~~~~~~~~~~~~~~~ 75 (161)
T cd01861 51 -------------------------------------------------------LQLWDTAGQERFRSLIPSYIRDSSV 75 (161)
T ss_pred -------------------------------------------------------EEEEECCCcHHHHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+..... .++|++++|||+|+.
T Consensus 76 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~ 118 (161)
T cd01861 76 AVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhcc
Confidence 9999999999999999999998876542 368999999999985
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=202.20 Aligned_cols=165 Identities=25% Similarity=0.372 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+..+||+|+|++|||||||+++|+++.+. .+.++++ ++....+.+++..+.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 63 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLK--------------------------- 63 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEE---------------------------
Confidence 34789999999999999999999988774 4566666 444555655555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|+++|..++..++++
T Consensus 64 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 64 ----------------------------------------------------------LTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+.. |...+.... ....+|+++||||+|+..
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~------------------------------ 134 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRES------------------------------ 134 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc------------------------------
Confidence 999999999999999999976 666555432 224577888888888753
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..+++..++...+++
T Consensus 135 -------------------------------------------------------------~~~i~~~~~~~~~~~~~~~ 153 (211)
T PLN03118 135 -------------------------------------------------------------ERDVSREEGMALAKEHGCL 153 (211)
T ss_pred -------------------------------------------------------------cCccCHHHHHHHHHHcCCE
Confidence 1122333445566667889
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
||||||++|.|++++|+.+++....
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986633
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=194.24 Aligned_cols=119 Identities=31% Similarity=0.554 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++++.+.|...+.++.+ ++.++.+.+++..+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~----------------------------- 51 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVK----------------------------- 51 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 47999999999999999999999999887888887 456778888777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+++|...+..+++++|
T Consensus 52 --------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~~ 75 (163)
T cd01860 52 --------------------------------------------------------FEIWDTAGQERYRSLAPMYYRGAA 75 (163)
T ss_pred --------------------------------------------------------EEEEeCCchHHHHHHHHHHhccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.+|+.+..|+..+..... +.+|+++++||+|+..
T Consensus 76 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 76 AAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 99999999999999999999999887642 5789999999999863
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=193.36 Aligned_cols=118 Identities=34% Similarity=0.612 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+...+...+.++++ ++....+.+++..+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVK------------------------------ 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999988877777777 455556666555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..+...+++++|+
T Consensus 51 -------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~d~ 75 (164)
T smart00175 51 -------------------------------------------------------LQIWDTAGQERFRSITSSYYRGAVG 75 (164)
T ss_pred -------------------------------------------------------EEEEECCChHHHHHHHHHHhCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+++.+..|+..+..... +.+|+++++||+|+..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 76 ALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 9999999999999999999999887653 5789999999999764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=192.58 Aligned_cols=119 Identities=29% Similarity=0.592 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++++.+.|...+.+++.+.+.+....++..+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQ------------------------------- 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999998899988877777777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|++.|..++..++++++++
T Consensus 50 ------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (164)
T cd04139 50 ------------------------------------------------------LNILDTAGQEDYAAIRDNYHRSGEGF 75 (164)
T ss_pred ------------------------------------------------------EEEEECCChhhhhHHHHHHhhcCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||+.++.+|+.+..|+..+..... ...+|+++|+||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 76 LLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 999999999999999999988887642 25789999999999864
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=190.99 Aligned_cols=118 Identities=26% Similarity=0.493 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|++..|...+.++.+ ++....+.+++..+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVK------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999988777777776 444455555555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+...+++++|+
T Consensus 51 -------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~d~ 75 (161)
T cd01863 51 -------------------------------------------------------LAIWDTAGQERFRTLTSSYYRGAQG 75 (161)
T ss_pred -------------------------------------------------------EEEEECCCchhhhhhhHHHhCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+.+... ...+|++++|||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 76 VILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 9999999999999999999999887753 3578899999999986
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=219.58 Aligned_cols=194 Identities=17% Similarity=0.094 Sum_probs=131.2
Q ss_pred eeeeccccc--------cchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc-
Q psy16673 145 VDILDTCGD--------LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS- 215 (373)
Q Consensus 145 ~~i~D~~g~--------~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~- 215 (373)
+.+|||+|. +.+......++..+|++++|+|..+..+.... .+...+++ ...|+++|+||+|+..
T Consensus 49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKE 122 (429)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcc
Confidence 899999996 33445566678899999999999875443331 22233333 3578999999999765
Q ss_pred ------------------------------------------------------------------------ccc-----
Q psy16673 216 ------------------------------------------------------------------------HHR----- 218 (373)
Q Consensus 216 ------------------------------------------------------------------------~~r----- 218 (373)
..+
T Consensus 123 ~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~ 202 (429)
T TIGR03594 123 DAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSD 202 (429)
T ss_pred cccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCC
Confidence 000
Q ss_pred -------------ccccccceeeeccCCCCCch----------hhh-hccccccEEEEEEecCCccchhhHHHHHHHHHh
Q psy16673 219 -------------AVHLEDVDILDTCGDLQFPA----------MRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274 (373)
Q Consensus 219 -------------~~~~~~~~~~dtag~~~~~~----------~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~ 274 (373)
......+.++||+|..++.. ++. .+++.+|++++|+|++++.+.++..-+ ..+.+
T Consensus 203 ~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~ 281 (429)
T TIGR03594 203 IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIA-GLILE 281 (429)
T ss_pred CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH
Confidence 00112257899999765542 222 368899999999999999888776432 22222
Q ss_pred hccCCCCCchhhccccccceeeeeccccccccch----hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 275 QRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ----SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 275 ~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r----~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.++| +++|+||||+.... .+.......++...++++++|||++|.|++++|+.+.+.+..
T Consensus 282 ----~~~~------------iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 282 ----AGKA------------LVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred ----cCCc------------EEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1344 55999999986221 222233334444456899999999999999999999998877
Q ss_pred hccCCCccccc
Q psy16673 351 LTTNGDENSLK 361 (373)
Q Consensus 351 ~~~~~~~~~~~ 361 (373)
...+.++..++
T Consensus 346 ~~~~i~t~~ln 356 (429)
T TIGR03594 346 ANRRISTSKLN 356 (429)
T ss_pred hcCcCCHHHHH
Confidence 76666655544
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=191.39 Aligned_cols=120 Identities=29% Similarity=0.566 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++++++..|...+.++++ ++..+.+.+.+..+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVT------------------------------ 50 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999998888888876 566666666665555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~d~ 75 (172)
T cd01862 51 -------------------------------------------------------LQIWDTAGQERFQSLGVAFYRGADC 75 (172)
T ss_pred -------------------------------------------------------EEEEeCCChHHHHhHHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
++++||+.++.+|+.+..|.+.+..... ...++|+++||||+|+..
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 76 CVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 9999999999999999999988766542 123688999999999863
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=188.36 Aligned_cols=118 Identities=30% Similarity=0.578 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.+...+.+++. +...+.+...+..+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRID------------------------------ 50 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999988776666665 344445555444444
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+++.+++.+|+
T Consensus 51 -------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~~~ 75 (162)
T cd04123 51 -------------------------------------------------------LAIWDTAGQERYHALGPIYYRDADG 75 (162)
T ss_pred -------------------------------------------------------EEEEECCchHHHHHhhHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+++.+..|+.++..... .++|+++++||+|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~ 119 (162)
T cd04123 76 AILVYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 9999999999999999999999887753 3688999999999863
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=189.21 Aligned_cols=121 Identities=27% Similarity=0.560 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+..+||+++|++|||||||+++++.+.+...+.++++ ++..+.+.+.+..+.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 57 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIK--------------------------- 57 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEE---------------------------
Confidence 4568999999999999999999998888877777776 566666666666555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|...+..++..
T Consensus 58 ----------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~ 79 (169)
T cd04114 58 ----------------------------------------------------------LQIWDTAGQERFRSITQSYYRS 79 (169)
T ss_pred ----------------------------------------------------------EEEEECCCcHHHHHHHHHHhcC
Confidence 9999999999999998999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||+.+..+|+.+..|+..+..... ..+|++++|||.|+.+
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 9999999999999999999999998876642 4688888899999753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=196.63 Aligned_cols=118 Identities=47% Similarity=0.814 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLT-------------------------------- 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEE--------------------------------
Confidence 699999999999999999999999888888887776666766665555
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++||++|+..|..++..++.++|+++
T Consensus 49 -----------------------------------------------------l~i~D~~G~~~~~~~~~~~~~~ad~vi 75 (198)
T cd04147 49 -----------------------------------------------------LDILDTSGSYSFPAMRKLSIQNSDAFA 75 (198)
T ss_pred -----------------------------------------------------EEEEECCCchhhhHHHHHHhhcCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|||++++.+|+.+..|+..+.+... ...+|+++++||.|+..
T Consensus 76 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 76 LVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 99999999999999999998887653 24699999999999864
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=189.24 Aligned_cols=117 Identities=31% Similarity=0.602 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.++..+.+...+...+..+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVN------------------------------- 49 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999888888888776666666666666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|+++|..++..+++.+|++
T Consensus 50 ------------------------------------------------------l~~~D~~g~~~~~~~~~~~~~~~~~~ 75 (171)
T cd00157 50 ------------------------------------------------------LGLWDTAGQEEYDRLRPLSYPNTDVF 75 (171)
T ss_pred ------------------------------------------------------EEEEeCCCcccccccchhhcCCCCEE
Confidence 99999999999988888889999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|..+.. |+..+.... ...|+++||||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 76 LICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhh
Confidence 99999999999988754 887777654 4799999999999975
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=188.08 Aligned_cols=119 Identities=29% Similarity=0.541 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
.||+++|++|||||||+++|+...|...+.|++.+.+++.+.+++..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYH------------------------------- 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999888888887666666666655555
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|+++|..++..++..++++
T Consensus 51 ------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~~~~ 76 (180)
T cd04137 51 ------------------------------------------------------LEIVDTAGQDEYSILPQKYSIGIHGY 76 (180)
T ss_pred ------------------------------------------------------EEEEECCChHhhHHHHHHHHhhCCEE
Confidence 89999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||+++..+|+.+..|+..+.+... ..+.|+++++||+|+..
T Consensus 77 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 77 ILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 999999999999999999888776532 24678899999999863
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=191.14 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=94.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|..+.|.. +.||++-.+. .+ ....+.
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~--~~~~~~--------------------------- 54 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TV--TYKNVK--------------------------- 54 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EE--EECCEE---------------------------
Confidence 3567899999999999999999999887754 5666652211 11 111222
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++||++|+++|..++..++++
T Consensus 55 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 76 (168)
T cd04149 55 ----------------------------------------------------------FNVWDVGGQDKIRPLWRHYYTG 76 (168)
T ss_pred ----------------------------------------------------------EEEEECCCCHHHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+.++.... ...++|++|+|||+|+..
T Consensus 77 a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 77 TQGLIFVVDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCEEEEEEeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCcc
Confidence 999999999999999999988777665432 124689999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=193.42 Aligned_cols=124 Identities=24% Similarity=0.459 Sum_probs=107.7
Q ss_pred CcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccc
Q psy16673 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82 (373)
Q Consensus 4 ~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (373)
.+.....+||+++|++|||||||+++|+.+.|...+.+|++ ++....+..++..+.
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~----------------------- 59 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPIC----------------------- 59 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEE-----------------------
Confidence 35677789999999999999999999999999999999988 555555555555555
Q ss_pred ceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHh
Q psy16673 83 DVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRL 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~ 162 (373)
+++||++|++.|..++..
T Consensus 60 --------------------------------------------------------------i~~~Dt~g~~~~~~~~~~ 77 (215)
T PTZ00132 60 --------------------------------------------------------------FNVWDTAGQEKFGGLRDG 77 (215)
T ss_pred --------------------------------------------------------------EEEEECCCchhhhhhhHH
Confidence 999999999999999999
Q ss_pred hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 163 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 163 ~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+++++++|||+++..+|..+..|+..+.... .++|++++|||.|+.+
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKD 127 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCcc
Confidence 9999999999999999999999999999988764 5789999999999853
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=190.13 Aligned_cols=120 Identities=20% Similarity=0.359 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+.+||+++|++|||||||+++++.+.|... .||.+ +.....+... +..+.
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~--------------------------- 53 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGIT--------------------------- 53 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceE---------------------------
Confidence 468999999999999999999998888754 56654 3333333221 12223
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..++..++++
T Consensus 54 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 75 (183)
T cd04152 54 ----------------------------------------------------------FHFWDVGGQEKLRPLWKSYTRC 75 (183)
T ss_pred ----------------------------------------------------------EEEEECCCcHhHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+++.+..|+.++..... ....|+++|+||+|+..
T Consensus 76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 76 TDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN 123 (183)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence 9999999999999999999999888876542 24689999999999863
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=189.82 Aligned_cols=112 Identities=15% Similarity=0.285 Sum_probs=94.5
Q ss_pred EEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecc
Q psy16673 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL 92 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
|+++|++|||||||+++|+++.|...+.||++-.+ ..++...+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~--------------------------------- 45 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAI--------------------------------- 45 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeE---------------------------------
Confidence 79999999999999999999989888888876211 122222222
Q ss_pred ccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEE
Q psy16673 93 PKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLL 172 (373)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 172 (373)
+.+||++|+++|..++..+++++|++++
T Consensus 46 ----------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 73 (164)
T cd04162 46 ----------------------------------------------------MELLEIGGSQNLRKYWKRYLSGSQGLIF 73 (164)
T ss_pred ----------------------------------------------------EEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 173 VYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 173 v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|||.+++.+|..++.|+..+.... +++|+++||||.|+..
T Consensus 74 V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~ 113 (164)
T cd04162 74 VVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPA 113 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcC
Confidence 999999999999999988876432 6899999999999875
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-25 Score=187.92 Aligned_cols=115 Identities=15% Similarity=0.270 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||++++..+.|.. +.||++..+. .+.. ..+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~------------------------------- 45 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNIS------------------------------- 45 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEE-------------------------------
Confidence 489999999999999999999888874 6777762221 1111 1222
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|+++|..++..+++++|++
T Consensus 46 ------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~ad~~ 71 (159)
T cd04150 46 ------------------------------------------------------FTVWDVGGQDKIRPLWRHYFQNTQGL 71 (159)
T ss_pred ------------------------------------------------------EEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+..|+..+.... ....+|++++|||+|+.+
T Consensus 72 i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 72 IFVVDSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCC
Confidence 99999999999999988777665332 124689999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=213.03 Aligned_cols=191 Identities=16% Similarity=0.094 Sum_probs=128.4
Q ss_pred eeeeccccccc--------hhHhHHhhhhhcCeEEEEEeCCChhhHH--HHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~--------~~~~~~~~~~~~~~~i~v~dv~~~~s~~--~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|.+. +......++..+|++++|+|..+..+.. .+..|+. + ...|+++|+||+|+.
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~---~-----~~~piilv~NK~D~~ 122 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR---K-----SNKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---H-----cCCcEEEEEECccCc
Confidence 89999999886 2333455678999999999998754333 2333432 2 268899999999964
Q ss_pred c------------------------------------------------------------------------ccc----
Q psy16673 215 S------------------------------------------------------------------------HHR---- 218 (373)
Q Consensus 215 ~------------------------------------------------------------------------~~r---- 218 (373)
+ ..+
T Consensus 123 ~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~ 202 (435)
T PRK00093 123 DEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVS 202 (435)
T ss_pred cchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeec
Confidence 3 000
Q ss_pred --------------ccccccceeeeccCCCCCc----------hhhh-hccccccEEEEEEecCCccchhhHHHHHHHHH
Q psy16673 219 --------------AVHLEDVDILDTCGDLQFP----------AMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273 (373)
Q Consensus 219 --------------~~~~~~~~~~dtag~~~~~----------~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~ 273 (373)
......+.++||+|..... .++. .+++.+|++++|+|++++.+.++..- ...+.
T Consensus 203 ~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~ 281 (435)
T PRK00093 203 DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRI-AGLAL 281 (435)
T ss_pred CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0011125788999964432 2233 36789999999999999988876643 22222
Q ss_pred hhccCCCCCchhhccccccceeeeeccccccccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 274 ~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+ .+.| +++|+||||+.+.. .+..+....+.....+|+++|||++|.|++++|+.+.+.+..
T Consensus 282 ~----~~~~------------~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 282 E----AGRA------------LVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred H----cCCc------------EEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2 2234 55999999986432 233333344444556899999999999999999999998776
Q ss_pred hccCCCcccc
Q psy16673 351 LTTNGDENSL 360 (373)
Q Consensus 351 ~~~~~~~~~~ 360 (373)
..++..+..+
T Consensus 346 ~~~~i~t~~l 355 (435)
T PRK00093 346 ANRRISTSVL 355 (435)
T ss_pred HcCcCChHHH
Confidence 6665555443
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=186.06 Aligned_cols=116 Identities=25% Similarity=0.415 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|..+.|+..+.++. +.++....+.+..+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------------- 48 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVP------------------------------- 48 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEE-------------------------------
Confidence 489999999999999999999999977644433 333333344444444
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|++.+...+..++.++|++
T Consensus 49 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (166)
T cd01893 49 ------------------------------------------------------TTIVDTSSRPQDRANLAAEIRKANVI 74 (166)
T ss_pred ------------------------------------------------------EEEEeCCCchhhhHHHhhhcccCCEE
Confidence 99999999998888878888999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+. .|+..++... ..+|+++||||+|+.+
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 75 CLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRD 117 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 9999999999999986 5888887654 4799999999999975
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=182.49 Aligned_cols=118 Identities=44% Similarity=0.727 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++++.+.+...+.++..+.+.+.+..++..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYT-------------------------------- 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEE--------------------------------
Confidence 699999999999999999998889888888888666666666655555
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++||++|++.+..+...++..+++++
T Consensus 49 -----------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~~~~i 75 (160)
T cd00876 49 -----------------------------------------------------LDILDTAGQEEFSAMRDLYIRQGDGFI 75 (160)
T ss_pred -----------------------------------------------------EEEEECCChHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|||++++.++..+..|+..+...... ...|+++++||+|+..
T Consensus 76 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 76 LVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 999999999999999999888876521 4688888888888764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=188.17 Aligned_cols=118 Identities=15% Similarity=0.271 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||+++|..+.|. .+.||++-.+. .+.. ..+.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~---------------------------- 58 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNIS---------------------------- 58 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEE----------------------------
Confidence 45689999999999999999999888775 35666652211 1111 1122
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..+++++
T Consensus 59 ---------------------------------------------------------l~l~D~~G~~~~~~~~~~~~~~a 81 (175)
T smart00177 59 ---------------------------------------------------------FTVWDVGGQDKIRPLWRHYYTNT 81 (175)
T ss_pred ---------------------------------------------------------EEEEECCCChhhHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++|||++++.+++.+..|+..+.... ..+++|++|+|||.|+.+
T Consensus 82 d~ii~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 82 QGLIFVVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPD 128 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCccc
Confidence 99999999999999999988887775432 125789999999999864
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=190.96 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.++.....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~------------------------------ 50 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPE------------------------------ 50 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCC------------------------------
Confidence 4899999999999999999999999999999988 454455544321100
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+..+.+++||++|+++|..++..+|+++++
T Consensus 51 --------------------------------------------------~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 51 --------------------------------------------------EKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred --------------------------------------------------CcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 112339999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHH
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQ 195 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~ 195 (373)
+++|||++++.||+++..|+.++.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~ 106 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNK 106 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999764
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=188.08 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=93.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||+++|..+.|.. +.||++..+. .+. ...+.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~~~--~~~~~---------------------------- 62 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNIS---------------------------- 62 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-EEE--ECCEE----------------------------
Confidence 456899999999999999999999888864 5677762221 111 11222
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++.+..++..+++++
T Consensus 63 ---------------------------------------------------------~~i~D~~Gq~~~~~~~~~~~~~a 85 (181)
T PLN00223 63 ---------------------------------------------------------FTVWDVGGQDKIRPLWRHYFQNT 85 (181)
T ss_pred ---------------------------------------------------------EEEEECCCCHHHHHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+++.+..|+..+.... ..+++|++++|||+|+.+
T Consensus 86 ~~iI~V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 86 QGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCC
Confidence 99999999999999998887776654321 125789999999999875
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-25 Score=185.59 Aligned_cols=161 Identities=25% Similarity=0.412 Sum_probs=144.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+|++|+|..+|||||++.||+.+.|...|..|++ |+..+.+.+....+.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr----------------------------- 70 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVR----------------------------- 70 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHH-----------------------------
Confidence 68999999999999999999999999999999999 888888877766555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+++|.++...||++|.
T Consensus 71 --------------------------------------------------------~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 71 --------------------------------------------------------SMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred --------------------------------------------------------HHHHHhccchhHHHHHHHHhcccc
Confidence 889999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+.++||+.++..||+.+..|++.+.+-. ..||.++|-||+|+.++
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlved-------------------------------- 139 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVED-------------------------------- 139 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHh--------------------------------
Confidence 9999999999999999999999998876 68999999999998752
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+++..+.+.+++.+.+.++-
T Consensus 140 -----------------------------------------------------------s~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 140 -----------------------------------------------------------SQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred -----------------------------------------------------------hhcchHHHHHHHHHhhhhhhh
Confidence 223556778889999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++...||.++|.-+++...
T Consensus 161 tSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 161 TSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999998663
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=178.40 Aligned_cols=117 Identities=33% Similarity=0.643 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++++..+.+...+.++.+ +...+.+..++..+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVK------------------------------ 50 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888777777 555566665555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+...+++++|+
T Consensus 51 -------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~d~ 75 (159)
T cd00154 51 -------------------------------------------------------LQIWDTAGQERFRSITPSYYRGAHG 75 (159)
T ss_pred -------------------------------------------------------EEEEecCChHHHHHHHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+++.+..|+..+..... ...|+++++||+|+.
T Consensus 76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 76 AILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 9999999999999999999998887642 468899999999985
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=187.29 Aligned_cols=118 Identities=15% Similarity=0.273 Sum_probs=93.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||++++..+.|.. +.||++..+. .+. ...+.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~---------------------------- 62 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLK---------------------------- 62 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEE----------------------------
Confidence 446899999999999999999999888865 5667662221 111 11222
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..+++++
T Consensus 63 ---------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~a 85 (182)
T PTZ00133 63 ---------------------------------------------------------FTMWDVGGQDKLRPLWRHYYQNT 85 (182)
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ...++|++|+|||.|+.+
T Consensus 86 d~iI~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 86 NGLIFVVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCC
Confidence 99999999999999999887776664321 124689999999999864
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=183.89 Aligned_cols=70 Identities=11% Similarity=0.281 Sum_probs=61.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++++...+..+++++|++++|||.+++.+|+.+..|+..+.+.. ...+.|++++|||+|+..
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAG 114 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCccc
Confidence 8999999999999999999999999999999999999999999988886542 124589999999999863
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=182.51 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=61.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.++|++++|||++++.+|+.+..|+..+.... ...++|++++|||+|+.+
T Consensus 60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPG 129 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECccccc
Confidence 8999999999999999999999999999999999999999988887775432 225799999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=213.10 Aligned_cols=300 Identities=16% Similarity=0.085 Sum_probs=172.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceec--ceeeeeeecceEEeeeeeEEe-ccCC----------ccch
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED--LYSRDFHVGAVTIKEIPIVVA-GNKS----------DMTS 74 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d--~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~ 74 (373)
+...+|+|+|++|||||||+|+|++..+ +.+.+ ..|++.......+.+.+|.++ ..+. ...+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~ 347 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQ 347 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHH
Confidence 3456899999999999999999995532 22222 234444444445555566544 1111 1233
Q ss_pred hhhcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccc
Q psy16673 75 HHRAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTC 151 (373)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~ 151 (373)
+...++++|+++|++|.... .+.......+..++|+++|+||+|+...... ..+. |
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~~~~--~----------------- 406 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--AAEF--W----------------- 406 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--HHHH--H-----------------
Confidence 34468999999999996432 2334445556789999999999996421100 0000 0
Q ss_pred cccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHH-HHHHhc------cCCCccEEEecc----cccccc-----
Q psy16673 152 GDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE-IREQRQ------DFQEIPIVVAGN----KSDMTS----- 215 (373)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~-i~~~~~------~~~~~pi~ivgn----K~Dl~~----- 215 (373)
..+.... +..+.........+..|+-. +..... ....+.++++|. |+.+.+
T Consensus 407 ------------~lg~~~~-~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 407 ------------KLGLGEP-YPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred ------------HcCCCCe-EEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 0011111 12233333333333222211 110000 011234555554 333332
Q ss_pred -----------------cccccccccceeeeccCCC----------CCchhhh-hccccccEEEEEEecCCccchhhHHH
Q psy16673 216 -----------------HHRAVHLEDVDILDTCGDL----------QFPAMRR-LSIATAHAFLLVYSTTCLESFQSVKC 267 (373)
Q Consensus 216 -----------------~~r~~~~~~~~~~dtag~~----------~~~~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~ 267 (373)
....+....+.++||+|.. .|..++. .+++.++++++|+|++++.++++..-
T Consensus 474 ~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i 553 (712)
T PRK09518 474 ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV 553 (712)
T ss_pred cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH
Confidence 1122334456789999964 2333433 34789999999999999999988754
Q ss_pred HHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhh---hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 268 YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK---CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 268 ~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~---~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i 344 (373)
+ ..+.+ .++| +++|+||||+.+..... ......+.....++++++||++|.||+++|+.+
T Consensus 554 ~-~~~~~----~~~p------------iIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i 616 (712)
T PRK09518 554 M-SMAVD----AGRA------------LVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAM 616 (712)
T ss_pred H-HHHHH----cCCC------------EEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 3 33322 2344 55999999996532211 111111222234678999999999999999999
Q ss_pred HHHhhhhccCCCccccccc
Q psy16673 345 LTLSQILTTNGDENSLKRR 363 (373)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (373)
.+.+....++..+..+++-
T Consensus 617 ~~~~~~~~~~i~T~~Ln~~ 635 (712)
T PRK09518 617 QEALESWDQRIPTGKLNAF 635 (712)
T ss_pred HHHHHHhcccCChHHHHHH
Confidence 9988877777777665543
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=179.23 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++++.+.|.. +.||++..+. .+.++ .+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~----------------------------- 59 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NI----------------------------- 59 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--Ce-----------------------------
Confidence 457899999999999999999999888875 4566653221 11111 12
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
.+.+||++|++.+...+..++.++
T Consensus 60 --------------------------------------------------------~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 60 --------------------------------------------------------RFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred --------------------------------------------------------EEEEEECCCCHHHHHHHHHHhhcC
Confidence 299999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.++..+..|+..+.+.. ....+|+++++||+|+..
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCC
Confidence 99999999999999988888777665432 124689999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-23 Score=176.74 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=61.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|+++|..++..++.+++++++|||++++.+|..+..|+..+.+... ....+|+++|+||+|+.+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 89999999999999999999999999999999999999999888887765321 124799999999999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-23 Score=174.52 Aligned_cols=70 Identities=13% Similarity=0.303 Sum_probs=61.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+...+..++.++|++++|||..++.++..+..|+.++.+.. ...++|+++|+||+|+..
T Consensus 46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNE-HIKGVPVVLLANKQDLPG 115 (160)
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECccccc
Confidence 9999999999999999999999999999999999999999988887775432 124799999999999863
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=172.36 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=58.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||++|++.|..++..++..++++++|||++++.++.....|+..+.+.. .....|+++++||+|+.+
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPG 114 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCC
Confidence 9999999999999999999999999999999999988887766555443221 124689999999999864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=172.40 Aligned_cols=111 Identities=25% Similarity=0.364 Sum_probs=94.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~ 224 (373)
+.+|||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+.
T Consensus 31 l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~~-------- 100 (176)
T PTZ00099 31 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGDL-------- 100 (176)
T ss_pred EEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc--------
Confidence 99999999999999999999999999999999999999999999999876542 46888899999998631
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
T Consensus 101 -------------------------------------------------------------------------------- 100 (176)
T PTZ00099 101 -------------------------------------------------------------------------------- 100 (176)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+..+++..++..+++.|+||||++|.||+++|+.|++.+
T Consensus 101 ---~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 101 ---RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred ---cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11233345566677788999999999999999999999865
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=172.64 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=60.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|+|+++..+|+....|+..+.... ...+.|+++++||+|+..
T Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCC
Confidence 8899999999999888999999999999999999999998888888876543 225689999999999863
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-22 Score=171.63 Aligned_cols=70 Identities=27% Similarity=0.339 Sum_probs=62.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||++|++++..++..++.+++++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKN 114 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcC
Confidence 9999999999999999999999999999999999999999999998887542 224789999999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=167.28 Aligned_cols=70 Identities=13% Similarity=0.317 Sum_probs=62.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.++|++++|||++++.++..+..|+..+..... ....|+++++||+|+..
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 99999999999999999999999999999999999999999888887766432 35789999999999874
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=168.90 Aligned_cols=70 Identities=21% Similarity=0.388 Sum_probs=61.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|+|.+++.++..+..|+..+.+.. ....+|+++++||+|+..
T Consensus 52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNE-ALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEEcccccc
Confidence 8999999999999999999999999999999999999999888887776532 125799999999999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=184.89 Aligned_cols=136 Identities=18% Similarity=0.286 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|+.|||||||+++|+.+.|...+.+|++ +++.+.+.+++.......
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~------------------------ 74 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNS------------------------ 74 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccc------------------------
Confidence 3468999999999999999999999999999999998 555565655421000000
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
.| ......+.++||||+|++.|..++..++++
T Consensus 75 ----------------------------ik--------------------~d~~k~v~LqIWDTAGqErfrsL~~~yyr~ 106 (334)
T PLN00023 75 ----------------------------IK--------------------GDSERDFFVELWDVSGHERYKDCRSLFYSQ 106 (334)
T ss_pred ----------------------------cc--------------------ccCCceEEEEEEECCCChhhhhhhHHhccC
Confidence 00 001122449999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc----------CCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQD----------FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~----------~~~~pi~ivgnK~Dl~~ 215 (373)
++++|+|||++++.+|+++..|++++...... ...+|++|||||+||..
T Consensus 107 AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 107 INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999999999999876421 13589999999999975
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=161.56 Aligned_cols=114 Identities=20% Similarity=0.338 Sum_probs=92.4
Q ss_pred EEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecc
Q psy16673 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL 92 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
|+++|++|||||||++++.+..|...+.|+++-.+.+ +..+ .+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~--------------------------------- 45 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVT--------------------------------- 45 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEE---------------------------------
Confidence 8999999999999999999999988888877622211 1111 123
Q ss_pred ccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEE
Q psy16673 93 PKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLL 172 (373)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 172 (373)
+.+||++|+..+..++..++..+|++++
T Consensus 46 ----------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 73 (159)
T cd04159 46 ----------------------------------------------------LKVWDLGGQPRFRSMWERYCRGVNAIVY 73 (159)
T ss_pred ----------------------------------------------------EEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 8999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 173 VYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 173 v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|+|+++..++.....|+..+.... ....+|+++|+||+|+.+
T Consensus 74 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 74 VVDAADRTALEAAKNELHDLLEKP-SLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC
Confidence 999999999988887777665432 125789999999999864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=162.30 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=55.9
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.+|||+|+++|......++.++|++++|||+++..+++.+..|..... ..+|+++|+||+|+.+
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 67 YLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPS 133 (179)
T ss_pred EEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCc
Confidence 338999999999999999999999999999999999877777766653321 4688999999999853
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=167.39 Aligned_cols=119 Identities=28% Similarity=0.488 Sum_probs=102.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|..+.|...+.+++. ++...........+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 55 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIK----------------------------- 55 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEE-----------------------------
Confidence 38999999999999999999999999999999977 455555544444444
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|+++|..++..|+.+++
T Consensus 56 --------------------------------------------------------~~~~Dt~gq~~~~~~~~~y~~~~~ 79 (219)
T COG1100 56 --------------------------------------------------------LQLWDTAGQEEYRSLRPEYYRGAN 79 (219)
T ss_pred --------------------------------------------------------EEeecCCCHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCC-hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~-~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||.++ ..+++....|..++..... ...|+++||||+|+..
T Consensus 80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 80 GILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred EEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 9999999999 6666677789999888753 4699999999999986
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=160.06 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=60.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|+|++++.+++....|+..+.+.. ....+|+++++||.|+..
T Consensus 63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC
Confidence 8899999999999999999999999999999999999999888877765432 125789999999999863
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=158.28 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=54.4
Q ss_pred eeeecccccc----chhHhHHhhh---hhcCeEEEEEeCCCh-hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL----QFPAMRRLSI---ATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~----~~~~~~~~~~---~~~~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. .+..+...++ ..+|++++|+|++++ .+++.+..|.+++..........|+++|+||+|+.+
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 9999999963 2223334443 459999999999999 899999999999887643334688889999999864
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=157.10 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=47.1
Q ss_pred eeeeccccccch----------hHhHHhhhhhcCeEEEEEeCCChhhH--HHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQF----------PAMRRLSIATAHAFLLVYSTTCLESF--QSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~----------~~~~~~~~~~~~~~i~v~dv~~~~s~--~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|+... ..+. ......|++++|+|+++..++ +....|+..+.... ...|+++|+||.|
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~D 124 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKID 124 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccc
Confidence 999999997421 1111 111236899999999987654 55667888776543 4789999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+.+
T Consensus 125 l~~ 127 (168)
T cd01897 125 LLT 127 (168)
T ss_pred cCc
Confidence 864
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=157.23 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=59.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|+..+...+..++.+++++++|||+.+..++.....|+..+.... ....+|+++++||+|+..
T Consensus 60 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 60 LNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCcc
Confidence 8899999999998888888999999999999999999988887776665432 124699999999999864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=158.07 Aligned_cols=120 Identities=23% Similarity=0.451 Sum_probs=105.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+|++++|+.|.|||++.+|++.+.|...|.+|++ +.......-+...+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~ir--------------------------- 60 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIR--------------------------- 60 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEE---------------------------
Confidence 4589999999999999999999999999999999998 443333332333344
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+..|||+|+|.+..++.-||-+
T Consensus 61 ----------------------------------------------------------f~~wdtagqEk~gglrdgyyI~ 82 (216)
T KOG0096|consen 61 ----------------------------------------------------------FNVWDTAGQEKKGGLRDGYYIQ 82 (216)
T ss_pred ----------------------------------------------------------EEeeecccceeecccccccEEe
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.+++||++..-++.++..|..++.+.+ .++||+++|||.|...
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKA 128 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccc
Confidence 999999999999999999999999999988 5799999999999875
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=155.56 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=42.6
Q ss_pred eeeecccccc-----chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDL-----QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~-----~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
..+|||+|+. .|..+.. .++++|++++|||++++.++.. ..|.+.+ ..|+++|+||+|+.
T Consensus 37 ~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~--------~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 37 DGAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF--------VKPVIGLVTKIDLA 101 (142)
T ss_pred CeeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc--------cCCeEEEEEeeccC
Confidence 3579999972 3444444 4789999999999999988765 3443321 13888888888875
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=153.73 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=46.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++.++|++++|+|+++ ..+++.+. .+... ...|+++++||+|+.+
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~----~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL----GIKRGLVVLTKADLVD 118 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh----CCCcEEEEEECccccC
Confidence 8999999999998777778899999999999987 33443332 12211 2248899999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=149.49 Aligned_cols=119 Identities=29% Similarity=0.482 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|.+|+|||||+++++...++..+.+++. +.....+..++..+.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 51 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYK----------------------------- 51 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEE-----------------------------
Confidence 37999999999999999999998887777666655 333333444443344
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+.++..+...++..++
T Consensus 52 --------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~~~~ 75 (161)
T TIGR00231 52 --------------------------------------------------------FNLLDTAGQEDYRAIRRLYYRAVE 75 (161)
T ss_pred --------------------------------------------------------EEEEECCCcccchHHHHHHHhhhh
Confidence 899999999999999999899999
Q ss_pred eEEEEEeCCCh-hhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCL-ESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~-~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++.++|+... .++.... .|...+..... ...|+++++||.|+..
T Consensus 76 ~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 76 SSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCc
Confidence 99999999887 7777765 67777776652 2788999999999864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-20 Score=149.46 Aligned_cols=168 Identities=18% Similarity=0.377 Sum_probs=140.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
++.-.+||.++||+.+|||||+-.|+++.+.+++..+.+ .+..+++.+.+..+.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~Is------------------------- 70 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDIS------------------------- 70 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEE-------------------------
Confidence 455689999999999999999999999999888888888 778899999999888
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.|||.+|++++....+...
T Consensus 71 ------------------------------------------------------------fSIwdlgG~~~~~n~lPiac 90 (205)
T KOG1673|consen 71 ------------------------------------------------------------FSIWDLGGQREFINMLPIAC 90 (205)
T ss_pred ------------------------------------------------------------EEEEecCCcHhhhccCceee
Confidence 99999999999998888888
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.++-+++++||++.+.++.++.+|+.+.+..+ ....-++||||.|+.-. .+
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N---ktAiPilvGTKyD~fi~---lp----------------------- 141 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLN---KTAIPILVGTKYDLFID---LP----------------------- 141 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccC---CccceEEeccchHhhhc---CC-----------------------
Confidence 99999999999999999999999999988775 33344688999997520 00
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.++.+. -...++.+|+..++
T Consensus 142 -------------------------~e~Q~~-----------------------------------I~~qar~YAk~mnA 161 (205)
T KOG1673|consen 142 -------------------------PELQET-----------------------------------ISRQARKYAKVMNA 161 (205)
T ss_pred -------------------------HHHHHH-----------------------------------HHHHHHHHHHHhCC
Confidence 011110 12357888999999
Q ss_pred eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+.|+||+..+.||+++|..++..
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHH
Confidence 99999999999999999988763
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=159.65 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceec
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRS 41 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~ 41 (373)
++...++|+++|++|||||||+|+++++.+...+.|
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~ 40 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP 40 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC
Confidence 344578999999999999999999997766544444
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-19 Score=155.67 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=52.0
Q ss_pred eeeeccccccc---------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ---------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~---------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|... |.... ..+..+|++++|+|++++.++..+..|.+.+..... ..+|+++|+||+|+..
T Consensus 91 ~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 91 VLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLD 167 (204)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCC
Confidence 88999999732 11111 235689999999999999999888888877765532 4689999999999875
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=165.32 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=55.4
Q ss_pred eeeeccccccc----hhHhHHhh---hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLS---IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~---~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|..+ ...+...+ +..++++++|+|+++..+++.++.|.+++..+.......|+++|+||+|+.+
T Consensus 208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 89999999632 22344444 4468999999999998899999999999988754334688999999999864
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-19 Score=142.69 Aligned_cols=68 Identities=28% Similarity=0.450 Sum_probs=56.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+||++|++.+...+..++..+|++++|||++++.+|+.+..|+..+........++|+++||||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 89999999998888777779999999999999999999998766555555443336799999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=149.22 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=60.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||.+|+..++.++..|+.+++++|+|.|.++...+......+..+.... ....+|++|++||.|+.+
T Consensus 60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPD 129 (175)
T ss_dssp EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTT
T ss_pred EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchh-hcccceEEEEeccccccC
Confidence 8999999999999999999999999999999999988888777766665533 235799999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-18 Score=144.78 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=49.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++....+.... +..+.. ...|+++|+||+|+..
T Consensus 52 ~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 52 ITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEA-IKLAKA-----ANVPFIVALNKIDKPN 116 (168)
T ss_pred EEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCCEEEEEEceeccc
Confidence 8999999999999998889999999999999987432222111 122222 4689999999999863
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=159.97 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred eeeeccccccc----hhHhHHhhhh---hcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLSIA---TAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~~~---~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|..+ ...+...+++ .++++++|+|+++. .+++.+..|.+++..+.......|+++|+||+|+.
T Consensus 207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 89999999743 2245555555 58999999999987 78888989998888765333567888888999886
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 287 ~ 287 (329)
T TIGR02729 287 D 287 (329)
T ss_pred C
Confidence 4
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=146.88 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=51.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++++|++++|||+++.. +.....|+..+.. ..+|+++|+||+|+..
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 999999999999999999999999999999998742 3333344444332 3689999999999864
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=160.26 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=52.0
Q ss_pred eeeecccccc---------chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL---------QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~---------~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. .|.... ..+.++|++++|+|++++.+++.+..|.+.+..... .+.|+++|+||+|+.+
T Consensus 239 i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 239 VLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--EDIPQLLVYNKIDLLD 315 (351)
T ss_pred EEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--CCCCEEEEEEeecCCC
Confidence 8899999972 222222 247789999999999999988888777776665531 4689999999999864
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=165.79 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=49.7
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|...+.. ....++..+|++++|||++++.+++.. |+..+.. ...|+++|+||+|+..
T Consensus 253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCC
Confidence 88999999865432 234578899999999999998888775 7665542 3678999999999853
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=141.24 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeeeccccccchhH------hHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA------MRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+.. +...++. .+|++++|+|..+.... ..|...+.+ ...|+++++||.|+.+
T Consensus 45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 89999999887653 4556664 89999999999875432 234444433 3578999999999864
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=160.48 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=53.3
Q ss_pred eeeeccccccc----hhHhHHhhhhh---cCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLSIAT---AHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~~~~---~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|... ...+...|+++ ++++++|+|+++. ..++.+..|.+++..+.......|+++|+||+|+.
T Consensus 208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 89999999642 33455555554 8999999999865 67888888999888775433467888888998874
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-17 Score=155.00 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=43.3
Q ss_pred eeeeccccccc-hhHhH-------HhhhhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ-FPAMR-------RLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~-~~~~~-------~~~~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|... +..+. ...+.++|++++|+|..+ +|..+. .|++.+... ..|.++|+||+|+.+
T Consensus 102 i~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~ 174 (339)
T PRK15494 102 VILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-----NIVPIFLLNKIDIES 174 (339)
T ss_pred EEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCcc
Confidence 89999999843 33222 234678999999999654 555554 355555442 356678999999853
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=162.03 Aligned_cols=63 Identities=25% Similarity=0.310 Sum_probs=49.1
Q ss_pred eeeeccccccchhHh--------HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~--------~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..++... ...++..+|++++|||++++.+++....|.. ....|+++|+||+|+.+
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccc
Confidence 889999998765421 3346788999999999999988887655543 14689999999999864
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=142.89 Aligned_cols=71 Identities=15% Similarity=0.316 Sum_probs=58.4
Q ss_pred eeeeccccccchhHhHHhhhhhc-CeEEEEEeCCCh-hhHHHHHHHHHHHHHHh-ccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATA-HAFLLVYSTTCL-ESFQSVKCYFEEIREQR-QDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~-~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++++......+++++ +++++|+|..+. .++..+..|+..+.... ...+.+|+++++||.|+..
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 89999999999998888899998 999999999997 67887777665553322 1125799999999999875
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=148.86 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=46.1
Q ss_pred eeeeccccccch-hH-------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF-PA-------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~-~~-------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.... .. ....++.++|++++|+|+++..+++ ..+.+.+.. ...|+++|+||+|+.+
T Consensus 50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKF 121 (270)
T ss_pred EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCC
Confidence 889999997532 11 2345678899999999999877664 334444433 3688999999999863
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=133.29 Aligned_cols=70 Identities=37% Similarity=0.578 Sum_probs=57.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|+..+......+++.++++++|+|++++.+++.+..|........ .....|+++++||+|+..
T Consensus 47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINK-EGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh-ccCCCcEEEEEecccccc
Confidence 9999999999888888888899999999999999999999888732222211 226799999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-17 Score=140.30 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=51.3
Q ss_pred eeeeccccccch----hHh---HHhhhhhcCeEEEEEeCCCh------hhHHHHHHHHHHHHHHhcc-----CCCccEEE
Q psy16673 145 VDILDTCGDLQF----PAM---RRLSIATAHAFLLVYSTTCL------ESFQSVKCYFEEIREQRQD-----FQEIPIVV 206 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~---~~~~~~~~~~~i~v~dv~~~------~s~~~l~~~~~~i~~~~~~-----~~~~pi~i 206 (373)
+.+|||+|.... ..+ ...++.++|++++|+|..+. .+++.+..|..++...... ....|+++
T Consensus 46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 125 (176)
T cd01881 46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY 125 (176)
T ss_pred EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence 899999996321 122 23346789999999999988 5788888888877654311 13678888
Q ss_pred ecccccccc
Q psy16673 207 AGNKSDMTS 215 (373)
Q Consensus 207 vgnK~Dl~~ 215 (373)
|+||+|+..
T Consensus 126 v~NK~Dl~~ 134 (176)
T cd01881 126 VLNKIDLDD 134 (176)
T ss_pred EEEchhcCc
Confidence 888888864
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=137.72 Aligned_cols=65 Identities=26% Similarity=0.259 Sum_probs=52.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+......++..+|++++|+|..+..+.... .++..+.. ...|+++++||+|+..
T Consensus 64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 89999999999988888899999999999999876654432 33333332 4789999999999974
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=128.48 Aligned_cols=162 Identities=30% Similarity=0.420 Sum_probs=127.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccC--CceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYS--DRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~--~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
-.||+++|-.+||||+++.+++.+.-. .++.||++|.|--.+..+.. ..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-arE--------------------------- 60 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-ARE--------------------------- 60 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-hhh---------------------------
Confidence 469999999999999999999855432 45788888888766665543 220
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccch-hHhHHhhhhh
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQF-PAMRRLSIAT 166 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~-~~~~~~~~~~ 166 (373)
.+.++||+|...+ ..+...|+.-
T Consensus 61 --------------------------------------------------------~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 61 --------------------------------------------------------QLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred --------------------------------------------------------eEEEeecccccCchhhhhHhHhcc
Confidence 1899999998887 6788899999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||..+++||+.+..+..+|.+.. +...+||++.|||+|+.
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~-------------------------------- 131 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRA-------------------------------- 131 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcc--------------------------------
Confidence 999999999999999999877666666543 22456666666666654
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+.|..+.++.||+.-.+..
T Consensus 132 -----------------------------------------------------------~p~~vd~d~A~~Wa~rEkvkl 152 (198)
T KOG3883|consen 132 -----------------------------------------------------------EPREVDMDVAQIWAKREKVKL 152 (198)
T ss_pred -----------------------------------------------------------cchhcCHHHHHHHHhhhheeE
Confidence 445566677888999899999
Q ss_pred EEeccCCCcCHHHHHHHHHHH
Q psy16673 327 LECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~ 347 (373)
+|++|.+...+-|.|..++..
T Consensus 153 ~eVta~dR~sL~epf~~l~~r 173 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASR 173 (198)
T ss_pred EEEEeccchhhhhHHHHHHHh
Confidence 999999999999999999874
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-17 Score=137.96 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=40.7
Q ss_pred eecccccc-----chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 147 ILDTCGDL-----QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 147 i~D~~g~~-----~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+|||||.. .+..+ ...+.++|++++|+|+++..++. ..|+..+ . ...|+++++||+|+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~---~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G---VSKRQIAVISKTDMP 104 (158)
T ss_pred cccCCccccCCHHHHHHH-HHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c---CCCCeEEEEEccccC
Confidence 69999972 22222 23468999999999999887663 3344332 1 356888999999975
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=161.93 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=56.7
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|...+. ..+|+++|+||+|+.+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCc
Confidence 449999999999999999999999999999999999877777776654432 3678999999999863
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=133.91 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=45.7
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|...+.. .....+..+|++++|+|..+..+..... +...+.. ...|+++|+||+|+.+
T Consensus 47 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~ 119 (157)
T cd01894 47 FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIK 119 (157)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCC
Confidence 89999999887543 3345678899999999998765444321 2222222 3588999999999874
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=127.91 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=57.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||.+||...+..+..||..+||+|.|+|..++..++.....+.++..- .+....|++++.||.|+..
T Consensus 62 L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 62 LNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred EEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCcc
Confidence 999999999999999999999999999999999998888776544444321 1224578999999999874
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=133.55 Aligned_cols=63 Identities=25% Similarity=0.235 Sum_probs=48.4
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..++.. ....++..+|++++|+|+.++.+....+.|.. ....|+++|+||.|+.+
T Consensus 51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCC
Confidence 88999999765532 23345678999999999998887777655433 15789999999999875
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=154.43 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeeccccccch--hHhHH------hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF--PAMRR------LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~--~~~~~------~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.... ..+.. ..+..+|++++|+|++++.+++.+..|.+.+..... .++|+++|+||+|+..
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLD 323 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCC
Confidence 789999997431 22222 235789999999999999988888766665555431 4689999999999863
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-16 Score=160.47 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=50.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+.+. .+++.+.. +.. ..+|+++++||+|+.+
T Consensus 297 ItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k~-----~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 297 IVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQA-----ANVPIIVAINKIDKAN 361 (742)
T ss_pred EEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HHh-----cCceEEEEEECCCccc
Confidence 99999999999999999999999999999999874 44444332 221 4689999999999874
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=153.34 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.6
Q ss_pred cCCeEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
.++++|+|||+++.|++++++.|.+++...+..
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 367999999999999999999999988666543
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=131.49 Aligned_cols=65 Identities=25% Similarity=0.220 Sum_probs=45.0
Q ss_pred eeeeccccccch----------hHh-HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQF----------PAM-RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~----------~~~-~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.... ... ....+.++|++++|+|..++.+..... +...+.. ...|+++++||+|+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl 125 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDL 125 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEecccc
Confidence 789999996433 111 123467899999999999987766543 2222222 35899999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 126 ~~ 127 (174)
T cd01895 126 VE 127 (174)
T ss_pred CC
Confidence 75
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=136.42 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~ 43 (373)
....++|+++|++|||||||+++++...|...+.++.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~ 57 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP 57 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC
Confidence 4457899999999999999999999776655544444
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-16 Score=157.14 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=49.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++...-+....| ..+.. ..+|+++++||+|+.+
T Consensus 137 i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 137 ITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECccccc
Confidence 89999999999999999999999999999998874322222222 11111 4689999999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-16 Score=136.72 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=45.0
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+..+..........+|++++|+|..+.........|. +... ...|+++++||+|+..
T Consensus 69 ~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~----~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 69 QITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI----LCKKLIVVLNKIDLIP 134 (192)
T ss_pred eEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH----cCCCEEEEEECcccCC
Confidence 3899999999765443334456689999999998754444433332 1111 2468999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-16 Score=129.55 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHhhhcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 315 EEIREQRQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 315 ~~~~a~~~~~~~~E~SAktg~nv~elf~~i 344 (373)
.+.+++.+|+|++.+||++|+|++++++.|
T Consensus 127 ~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 127 AEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 466777789999999999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-18 Score=141.78 Aligned_cols=102 Identities=24% Similarity=0.473 Sum_probs=88.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..-+|+.|+|+-+|||||++.|++...|...|++|++ |+--+-++.+..+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t----------------------------- 73 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKT----------------------------- 73 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHH-----------------------------
Confidence 3468999999999999999999999999999999999 6644544444332
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
.+++++||.+||++|-.+...||+.
T Consensus 74 -------------------------------------------------------~vRlqLwdIagQerfg~mtrVyyke 98 (229)
T KOG4423|consen 74 -------------------------------------------------------IVRLQLWDIAGQERFGNMTRVYYKE 98 (229)
T ss_pred -------------------------------------------------------HHHHHHhcchhhhhhcceEEEEecC
Confidence 2339999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHH
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIR 193 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~ 193 (373)
+++..+|||+++..+|+....|.+++.
T Consensus 99 a~~~~iVfdvt~s~tfe~~skwkqdld 125 (229)
T KOG4423|consen 99 AHGAFIVFDVTRSLTFEPVSKWKQDLD 125 (229)
T ss_pred CcceEEEEEccccccccHHHHHHHhcc
Confidence 999999999999999999999988764
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=135.92 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=38.1
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+++|+||+|+.... +.+.++.. .+++++||++|.|++++|+.+.+...+.
T Consensus 179 ~iiV~NK~Dl~~~~-----~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~~i 228 (233)
T cd01896 179 CLYVYNKIDLISIE-----ELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLGLI 228 (233)
T ss_pred EEEEEECccCCCHH-----HHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhCcE
Confidence 55999999985433 33344443 4689999999999999999999866544
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=156.86 Aligned_cols=62 Identities=27% Similarity=0.400 Sum_probs=49.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|||+++. .+++.+. .+.. ..+|+++++||+|+.+
T Consensus 339 ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~~-----~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 339 ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAKA-----AGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHHh-----cCCcEEEEEECccccc
Confidence 89999999999999999999999999999999873 3443322 1111 4689999999999964
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=131.54 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=44.5
Q ss_pred eeeeccccc----------cchhHhHHhhhhh---cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCGD----------LQFPAMRRLSIAT---AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~----------~~~~~~~~~~~~~---~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+|. +.|..+...+++. ++++++|+|..++-+...... +..+.. ...|+++++||.
T Consensus 66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~-~~~~~~-----~~~pviiv~nK~ 139 (179)
T TIGR03598 66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM-LEWLRE-----RGIPVLIVLTKA 139 (179)
T ss_pred EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHH-HHHHHH-----cCCCEEEEEECc
Confidence 899999994 2344455556654 579999999987655555432 233322 368899999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 140 D~~~ 143 (179)
T TIGR03598 140 DKLK 143 (179)
T ss_pred ccCC
Confidence 9864
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=151.91 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=49.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+||++|+++|......++.++|++++|+|+++ +.+++.+.. +.. ..+| +++|+||+|+.+
T Consensus 52 v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~i----l~~-----lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 52 LGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAV----LDL-----LGIPHTIVVITKADRVN 117 (581)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHH----HHH-----cCCCeEEEEEECCCCCC
Confidence 8999999999998888888999999999999988 555555431 221 2466 999999999875
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=127.01 Aligned_cols=120 Identities=18% Similarity=0.349 Sum_probs=93.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..++..+|+++|--|+||||++.++-.+.+... .||++ +++....+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG------fnVE~v~ykn------------------------- 60 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG------FNVETVEYKN------------------------- 60 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc------cceeEEEEcc-------------------------
Confidence 356789999999999999999999987777665 77776 1222222221
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++.+||.+||++++.++..|+.
T Consensus 61 ---------------------------------------------------------~~f~vWDvGGq~k~R~lW~~Y~~ 83 (181)
T KOG0070|consen 61 ---------------------------------------------------------ISFTVWDVGGQEKLRPLWKHYFQ 83 (181)
T ss_pred ---------------------------------------------------------eEEEEEecCCCcccccchhhhcc
Confidence 22999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++++|+|.|.+++.-+...++-+..+.... +....|+.+.+||.|+.+
T Consensus 84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPG 132 (181)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccc
Confidence 9999999999999987777665444433322 235899999999999986
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=141.46 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=52.0
Q ss_pred eeeeccccccch----hHhHH---hhhhhcCeEEEEEeCC---ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQF----PAMRR---LSIATAHAFLLVYSTT---CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~~~---~~~~~~~~~i~v~dv~---~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++||||...- ..+.. .++..++++++|+|++ +...++.+..|++++..+.......|+++|.||+|+.
T Consensus 209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 889999996431 11222 3467789999999988 5567888888888888765333467888999999986
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 289 ~ 289 (390)
T PRK12298 289 D 289 (390)
T ss_pred C
Confidence 4
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=122.94 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=43.1
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|...... .....+..+|++++|+|.+++.+.. ...+...+.. ...|+++++||+|+.
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~-----~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK-----SKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH-----hCCCEEEEEEchhcc
Confidence 88999999754432 2344577899999999998872211 1223333332 257899999999986
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=151.89 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 315 EEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 315 ~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.+++..|+++++|||++|.|++++|+.+.+.+
T Consensus 121 ~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 EEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3556677789999999999999999999998754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=146.53 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=51.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..+++.+|++++|||+++ +.+++.+..+ .. ..+|+++++||+|+..
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH-----cCCCEEEEEECCCccc
Confidence 8899999999999999999999999999999987 5666655432 21 3689999999999974
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=145.07 Aligned_cols=124 Identities=24% Similarity=0.389 Sum_probs=95.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+..+||+++|+.|||||||+..++.+.|++...+-.... +--..+....+.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i-~IPadvtPe~vp-------------------------- 57 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI-LIPADVTPENVP-------------------------- 57 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc-ccCCccCcCcCc--------------------------
Confidence 34567899999999999999999999999988755544422 111111111111
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
..+.|++..+.-......-++
T Consensus 58 -----------------------------------------------------------t~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 58 -----------------------------------------------------------TSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred -----------------------------------------------------------eEEEecccccchhHHHHHHHh
Confidence 667788765555555556688
Q ss_pred hcCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.|+.+.++|+++++.+++.+.. |+..++...++...+||++||||+|...
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 9999999999999999999986 9999999887778999999999999986
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=127.65 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+|||+|++.|.......+..+|++++|+|+.++ .+++.+..| ... ...|++++.||.|+.+
T Consensus 84 ~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~----~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 84 HVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM----GLKHIIIVQNKIDLVK 151 (203)
T ss_pred EEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc----CCCcEEEEEEchhccC
Confidence 389999999999887777778889999999999863 334433332 211 2357889999999864
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=146.28 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=55.1
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|...+..+++.+|++++|+|+++.........|..... ..+|+++|+||+|+.+
T Consensus 74 ~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 74 YILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCc
Confidence 449999999999999999999999999999999998766666655544321 3688999999999864
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=131.22 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=42.1
Q ss_pred eeeeccccccchh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|..... ......+..+|++++|+|+++..+- ......+.+.. ...|+++|+||+|+.
T Consensus 55 i~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 8899999964432 2334456789999999999883221 11222222321 368899999999986
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.2e-15 Score=118.55 Aligned_cols=119 Identities=19% Similarity=0.321 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+.+.++|-.++|||||+|....+.|.+.-.||++-. .+.+ ....+.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn-mrk~--tkgnvt---------------------------- 66 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN-MRKV--TKGNVT---------------------------- 66 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce-eEEe--ccCceE----------------------------
Confidence 357889999999999999999999999988888888721 1122 222222
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||.+|+-.|++.+..|+++.
T Consensus 67 ---------------------------------------------------------iklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 67 ---------------------------------------------------------IKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred ---------------------------------------------------------EEEEecCCCccHHHHHHHHhhcC
Confidence 78999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++.|.|..++...+.-..-++.+... .....+|+.+.|||.|+.+
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCcc
Confidence 9999999999987766554433333221 1336899999999999985
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=127.94 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=53.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......+++.+|++++|+|..+.... ....|+..+.+ ..+|+++++||.|+..
T Consensus 65 ~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 65 KVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 399999999999998888999999999999999886543 23445554443 3689999999999975
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=135.58 Aligned_cols=114 Identities=30% Similarity=0.429 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.+-+|++|+|+||||||||+|.++ .+..++|.|. +||++......++|++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~-----~~d~AIVTdI~GTTRDviee~i~i~G~p----------------------- 266 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALL-----GRDRAIVTDIAGTTRDVIEEDINLNGIP----------------------- 266 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHh-----cCCceEecCCCCCccceEEEEEEECCEE-----------------------
Confidence 346899999999999999999999 7778999877 7888888888888766
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-------
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA------- 158 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~------- 158 (373)
+.+.||+|.-+-..
T Consensus 267 -----------------------------------------------------------v~l~DTAGiRet~d~VE~iGI 287 (454)
T COG0486 267 -----------------------------------------------------------VRLVDTAGIRETDDVVERIGI 287 (454)
T ss_pred -----------------------------------------------------------EEEEecCCcccCccHHHHHHH
Confidence 99999999543321
Q ss_pred -hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 159 -MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 159 -~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
-.......||.+++|+|.+.+.+-+.... ++ .. ....|+++|.||.|+..
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~---~~---~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE---LL---PKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH---hc---ccCCCEEEEEechhccc
Confidence 23345678999999999988632222211 11 11 15688999999999986
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-14 Score=117.83 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=49.9
Q ss_pred eeeeccccccchhH-------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA-------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|...+.. ....++..+|++++|+|..+........ |...... ...|+++|+||.|+..
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCC
Confidence 99999999776543 3445778999999999999987777655 3333332 5789999999999875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=117.21 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecce
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~ 43 (373)
.|+++|++|+|||||++.++++.+.....++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~ 32 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTP 32 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence 38999999999999999999766655444443
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=119.44 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=49.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++|+||+.+|.......+..+|++++|.|..+.-..... ..+..+.. ..+|++++.||+|+.
T Consensus 72 i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~-----~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 72 ITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILRE-----LGIPIIVVLNKMDLI 135 (188)
T ss_dssp EEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHH-----TT-SEEEEEETCTSS
T ss_pred eeecccccccceeecccceecccccceeeeecccccccccc-cccccccc-----cccceEEeeeeccch
Confidence 99999999999988888889999999999999865443332 22233333 468899999999987
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=138.95 Aligned_cols=68 Identities=22% Similarity=0.141 Sum_probs=46.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|.......+..+|++++|+|+++..++... ..++..+... ...|++++.||.|+.+
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~----~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL----GINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc----CCCeEEEEEEcccccc
Confidence 399999999998876555667889999999999873222111 1122222222 2346889999999864
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-14 Score=116.06 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=60.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||.+||+..++++..||..++++++++|.++++-|+.....++.+...- ....+|+++..||.|+.+
T Consensus 71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQN 140 (197)
T ss_pred eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhhh
Confidence 8999999999999999999999999999999999998888777665554432 236799999999999986
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=122.21 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+.+|||+|+.+|......++..+|++++|+|..+..++.. ..|+..+.. ...|+++++||.|+.
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECcccC
Confidence 449999999999998888899999999999999988766543 334444332 358999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=141.68 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=29.0
Q ss_pred HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 315 EEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 315 ~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.+++..|+|++++||++|.|++++++.+.+..
T Consensus 134 ~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 134 IDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 3556677899999999999999999999998754
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-13 Score=135.91 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=51.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|++.|..++...++.+|++++|+|+++ +.+++.+..+ .. ..+|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH-----cCCCEEEEEECcCCc
Confidence 7899999999999999888999999999999987 6677665432 21 368999999999985
|
|
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-14 Score=122.97 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=52.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
.+++||||||++|+++...||++||++|+|||+|++.||+++..|+.++.++..+
T Consensus 59 KlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~ 113 (205)
T KOG0084|consen 59 KLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE 113 (205)
T ss_pred EEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC
Confidence 4679999999999999999999999999999999999999999999999998664
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=136.74 Aligned_cols=68 Identities=24% Similarity=0.075 Sum_probs=48.6
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHH--HHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~--i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+||++|+++|.......+..+|++++|+|+++..++... .+.+. +.... ...|+++++||+|+.+
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~---~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL---GINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc---CCCeEEEEEEChhccC
Confidence 399999999999877666678899999999999987543222 22211 22221 2357889999999864
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=120.82 Aligned_cols=66 Identities=23% Similarity=0.059 Sum_probs=45.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|.......+..+|++++|+|++....-.. ......+... ...++++|.||.|+.+
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~----~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL----GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc----CCCcEEEEEEchhccc
Confidence 8899999999887666667889999999999987532211 1111222221 2245777899999863
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=107.33 Aligned_cols=70 Identities=14% Similarity=0.313 Sum_probs=56.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||.+|+++.+.++..||.+..++|||.|..+..-.+..+.-+..+...+ +..+.|+.+.+||.|+.+
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~-em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR-EMRDAIILILANKQDLPD 132 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH-hhhcceEEEEecCccccc
Confidence 9999999999999999999999999999999988866665554333332221 235789999999999986
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-13 Score=131.10 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=47.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+||++|+++|.......+..+|++++|+|+++. .+.+.+. .+... ...|++++.||+|+.+
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~~----gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEII----GIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHHc----CCCeEEEEEEccccCC
Confidence 389999999999988777778889999999999863 2333332 22221 2346889999999874
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=118.01 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=46.3
Q ss_pred eeeeeccccccchhHhHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+.||+|+++|.......+. .+|++++|.|......-. ...++..+.. ..+|+++|.||+|+.+
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~-----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 85 LVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA-----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred EEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 3899999999998765554444 589999999987643322 2233333433 3578999999999864
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=120.81 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=50.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|.......++.+|++++|+|.++.... ....|+..... ..+|+++++||+|+..
T Consensus 72 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~-----~~~P~iivvNK~D~~~ 137 (267)
T cd04169 72 VINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL-----RGIPIITFINKLDREG 137 (267)
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh-----cCCCEEEEEECCccCC
Confidence 399999999999988778889999999999999875322 22233333322 4689999999999865
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=134.79 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=49.5
Q ss_pred eeeeccccc----------cchhHhH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGD----------LQFPAMR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~----------~~~~~~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|. +.|..++ ..++..+|++++|||+++..++..+. ++..+.. ...|+++|+||+|+
T Consensus 261 ~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-----~~~piIiV~NK~Dl 334 (472)
T PRK03003 261 WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-----AGRALVLAFNKWDL 334 (472)
T ss_pred EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECccc
Confidence 779999995 3444443 34578999999999999998888774 4444433 46899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 335 ~~ 336 (472)
T PRK03003 335 VD 336 (472)
T ss_pred CC
Confidence 75
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=128.28 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=44.7
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|..........+|++++|+|+.++ .+.+.+.. +... ...|+++|+||+|+.+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~----~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDII----GIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc----CCCcEEEEEEeecccc
Confidence 389999999988876555555667999999999853 33333322 2211 2346889999999875
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=132.34 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=53.6
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||+|+.+|......+++.+|++++|+|..+. .......|+..+.. ..+|++++.||.|+.+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRPS 130 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
Confidence 399999999999999899999999999999999763 23444556665554 3688999999999864
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=130.61 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=51.4
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|...+..+++.+|++++|+|..+...... ..++..+.. ..+|.+++.||.|+.+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-----~gip~IVviNKiD~~~ 134 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-----YGLKPIVVINKVDRPG 134 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-----cCCCEEEEEECcCCCC
Confidence 39999999999999999999999999999999987533322 233333332 3688899999999864
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=117.00 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=43.6
Q ss_pred eeeeccccccchh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.||||-.+-. ......+.++|.+++|.|.+..-.-. .+..++.+++ ...|++++.||.|...
T Consensus 56 iIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~-----~~~pvil~iNKID~~~ 128 (298)
T COG1159 56 IIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKK-----TKTPVILVVNKIDKVK 128 (298)
T ss_pred EEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhh-----cCCCeEEEEEccccCC
Confidence 8889999953321 23445677899999999998743221 1223333333 3579999999999875
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=129.61 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=46.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+||++|+++|.......+.++|++++|+|+.+ +.+.+.+. .+.. -.+| +++|.||+|+.+
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~----il~~-----lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA----ILQL-----TGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH----HHHH-----cCCCeEEEEEECCccCC
Confidence 7899999999998777777899999999999887 44444442 1222 1344 578999999864
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=114.25 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=51.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|.......+..+|++++|+|.++.........|. .+.. ..+|++++.||.|+..
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~-----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE-----AGIPRIIFINKMDRER 130 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCccCC
Confidence 899999999888888888899999999999998866554444443 2332 4689999999999875
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-12 Score=130.39 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=55.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......+++.+|++++|+|.++.........|. .+.. ..+|+++++||+|+..
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~-----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR-----YGIPRLIFINKMDRVG 139 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh-----cCCCEEEEEECCCCCC
Confidence 3999999999999999999999999999999999877766655553 3332 4689999999999986
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=107.69 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=40.5
Q ss_pred eeeeccccccchhH-----hHHhhhhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA-----MRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-----~~~~~~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|...... +....+.++|.++++.+ ..|.... .|++.+... ..|+++|+||+|+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~ 121 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDL 121 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHHh-----CCCEEEEEecccchh
Confidence 89999999754321 22333567888888743 2344443 455666553 478999999999963
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=101.49 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=55.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|+||++|..++..+.+++.+.+++.|-+.+..+ .....++.+... ..+|+++..||.||.+
T Consensus 70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~----~~ip~vVa~NK~DL~~ 135 (187)
T COG2229 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR----NPIPVVVAINKQDLFD 135 (187)
T ss_pred EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc----cCCCEEEEeeccccCC
Confidence 89999999999999999999999999999999999998 444444444433 2399999999999986
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=110.44 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.0
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
++.|.||.|+.+. +....+.+.. .++.+||+.|.|++++.+.+.+...+.+
T Consensus 242 ~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR 292 (365)
T COG1163 242 ALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR 292 (365)
T ss_pred eEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence 4599999999763 2333444443 7899999999999999999998765544
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-12 Score=113.50 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=45.5
Q ss_pred eeeeccccccchhH------------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPA------------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.++||+|...-.. -.......||.+++++|+++....-+ ...++.+.++ ..+|.++|.||.|
T Consensus 122 lvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvmnkid 196 (379)
T KOG1423|consen 122 LVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVMNKID 196 (379)
T ss_pred EEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH----hcCCceeeccchh
Confidence 88999999422111 12234567999999999997433222 2345566666 4899999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 197 ~~k 199 (379)
T KOG1423|consen 197 KLK 199 (379)
T ss_pred cch
Confidence 875
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-12 Score=112.46 Aligned_cols=67 Identities=24% Similarity=0.138 Sum_probs=46.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh-------hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-------SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-------s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+.+|.......+..+|++++|+|+++.. ..+....|. ..... ...|++++.||.|+..
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL----GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc----CCCeEEEEEEcccccc
Confidence 3999999999888766666677899999999998742 111122221 12211 2367888999999873
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-12 Score=111.10 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=60.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+||++|.++.|+||++|+++|+|||+|+..||..++.|..++.+..++ + -.+.|||||+
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~-~------------~vialvGNK~ 120 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASP-N------------IVIALVGNKA 120 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCC-C------------eEEEEecchh
Confidence 44679999999999999999999999999999999999999999999999998763 1 2245899999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 121 D 121 (200)
T KOG0092|consen 121 D 121 (200)
T ss_pred h
Confidence 8
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=110.35 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=53.4
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+++|......+++.+|++++|+|+....+.+....|.. ... ..+|+++++||+|+..
T Consensus 73 ~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~-----~~~p~ilviNKiD~~~ 139 (222)
T cd01885 73 YLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK-----ERVKPVLVINKIDRLI 139 (222)
T ss_pred eEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH-----cCCCEEEEEECCCcch
Confidence 449999999999999999999999999999999998766554333322 221 3579999999999863
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-12 Score=123.64 Aligned_cols=64 Identities=27% Similarity=0.208 Sum_probs=47.1
Q ss_pred eeeeccccccchhH----------hH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFPA----------MR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~----------~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|..++.. .. ..++..+|++++|+|+++..+..... ++..+.+ ...|+++|+||+|+
T Consensus 222 ~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 222 YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE-----AGKALVIVVNKWDL 295 (429)
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-----cCCcEEEEEECccc
Confidence 88999999654321 11 34678999999999999887776654 3333332 36899999999999
Q ss_pred c
Q psy16673 214 T 214 (373)
Q Consensus 214 ~ 214 (373)
.
T Consensus 296 ~ 296 (429)
T TIGR03594 296 V 296 (429)
T ss_pred C
Confidence 7
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-13 Score=113.65 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=61.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+++||||||++|+++.+.||++|.++++|||+|.+.+|+++..|+++++.+.+. +++ ++|||||+|
T Consensus 65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~-niv------------imLvGNK~D 130 (222)
T KOG0087|consen 65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS-NIV------------IMLVGNKSD 130 (222)
T ss_pred EeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC-CeE------------EEEeecchh
Confidence 579999999999999999999999999999999999999999999999999875 344 559999998
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=106.27 Aligned_cols=57 Identities=32% Similarity=0.474 Sum_probs=53.4
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
...+++|||||+++|+.+.+.+|++.|++++|||+|+.+||.+++.|.++++..++.
T Consensus 56 ~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds 112 (198)
T KOG0079|consen 56 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS 112 (198)
T ss_pred EEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc
Confidence 345789999999999999999999999999999999999999999999999998774
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=111.27 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=49.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|......+++.+|++++|.|..+...-.. ..++..+.. ..+|++++.||.|+.+
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 8999999999998888889999999999999876432222 223333332 4689999999999875
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=120.11 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......+++.+|++++|+|.++.-.- ....++..... ..+|++++.||.|+..
T Consensus 80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~-----~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL-----RDTPIFTFINKLDRDG 145 (526)
T ss_pred EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh-----cCCCEEEEEECCcccc
Confidence 399999999999998888889999999999999875322 22333333332 4799999999999875
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=129.70 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=48.1
Q ss_pred eeeecccccc----------chhHhH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDL----------QFPAMR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~----------~~~~~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.. .|..++ ..++..+|++++|+|+++..++..+..| ..+.. ...|+++|+||+|+
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL 573 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDL 573 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhc
Confidence 7799999953 233332 3346889999999999998888876543 33332 36899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 574 ~~ 575 (712)
T PRK09518 574 MD 575 (712)
T ss_pred CC
Confidence 75
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=103.11 Aligned_cols=64 Identities=27% Similarity=0.175 Sum_probs=46.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~ 214 (373)
+.+.||+|+..|.......+..+|++++|.|....-.-. ....+..+.+ ..+| ++++.||.|+.
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~-----~~~~~iIvviNK~D~~ 131 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ-----VGVPYIVVFLNKADMV 131 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-----cCCCcEEEEEeCCCCC
Confidence 789999999988877777788999999999987643222 1222333333 2455 77889999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=112.39 Aligned_cols=50 Identities=6% Similarity=0.082 Sum_probs=35.0
Q ss_pred eeeeeccccccccchhhhhhHHHHH-hhhcCCeEEEeccCCCcCHHHHHH-HHHHH
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIR-EQRQDFQLLECSAKDNYNIKEVFR-TFLTL 347 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~-a~~~~~~~~E~SAktg~nv~elf~-~i~~~ 347 (373)
++|+|+||.|+........ .+ ......+++.+||+.+.|++++.+ .+++.
T Consensus 216 PvI~VlNK~Dl~~~~~~~~----~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~ 267 (318)
T cd01899 216 PMVIAANKADIPDAENNIS----KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKY 267 (318)
T ss_pred cEEEEEEHHHccChHHHHH----HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHh
Confidence 3559999999754332221 22 222356799999999999999998 57774
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-12 Score=111.02 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=52.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
..+++|||+||++|..+...||++|.++++|||+|+..||+++..|++.+.++.++
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~ 116 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD 116 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC
Confidence 34679999999999999999999999999999999999999999999999998764
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=118.12 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEe--------------ccCCcc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVA--------------GNKSDM 72 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 72 (373)
..+||+|+|+||||||||+|+++ ++.+..+++. +|++.......+++++|.++ .+....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il-----geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL-----GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc-----cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 46999999999999999999999 6667777755 67777777777888888877 566777
Q ss_pred chhhhcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCccccc
Q psy16673 73 TSHHRAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSH 122 (373)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~ 122 (373)
..+..++..+|+++++.|.+.. .+..+..+.....+++++|+||+|+...
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 7888899999999999996443 3555557777899999999999997543
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=116.52 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=50.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......++..+|++++|+|..+.- ......+++.+.. ..+|+++++||+|+..
T Consensus 81 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~-----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 81 LVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL-----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh-----cCCCEEEEEECccccC
Confidence 3999999999999887788899999999999988742 1223334443322 4689999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=122.33 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=51.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|......+++.+|++++|+|..+....+....| ..+.. ..+|+++++||.|+..
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR-----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH-----cCCCEEEEEECCCCCC
Confidence 99999999999988888889999999999999886555443333 23332 3689999999999975
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=110.84 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDR 38 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~ 38 (373)
.++|+++|++|+|||||+|++++..+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~ 32 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPS 32 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence 68999999999999999999998776543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-11 Score=114.78 Aligned_cols=65 Identities=25% Similarity=0.129 Sum_probs=44.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|..........+|++++|+|+......... ..+..+.. ..+|. +++.||+|+.+
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~-----~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ-----VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCEEEEEEEecccCC
Confidence 88999999999876555566788999999999873222221 12222322 24665 46899999864
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=107.09 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=54.0
Q ss_pred eeeeccccccch----hHhHHhhh---hhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQF----PAMRRLSI---ATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~~~~~~---~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+-|.+|..+- ..+-..|+ ..+..+++|.|++.+ .-++.++.+..++..+.....+-|..||.||+|+.
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 677788884321 23444444 457999999999998 88889988888888887666778889999999985
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
+
T Consensus 326 e 326 (366)
T KOG1489|consen 326 E 326 (366)
T ss_pred h
Confidence 3
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=96.63 Aligned_cols=72 Identities=17% Similarity=0.292 Sum_probs=58.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++||.+|+...+..+..||...|++|+|.|.++..-|+.+..-+-++.+-- ....+|+.|..||.|+.-
T Consensus 62 f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 62 FHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLT 133 (185)
T ss_pred EEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHh
Confidence 349999999999999999999999999999999999999998765333332211 125688999999998863
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=111.08 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCCCchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhh
Q psy16673 233 DLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311 (373)
Q Consensus 233 ~~~~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 311 (373)
.++|..+.+.+++++|++++|||++++. ||+.+..|+..+.. .++|++ +|+||+||...+.+.
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~v------------IV~NK~DL~~~~~~~ 86 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPI------------IVLNKIDLLDDEDME 86 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEE------------EEEECcccCCCHHHH
Confidence 3788888899999999999999999877 89999999876643 235544 999999998777777
Q ss_pred hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 312 ~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.++.+.++. +|+++++|||++|.|++++|+.+..
T Consensus 87 ~~~~~~~~~-~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 87 KEQLDIYRN-IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHHHHH-CCCeEEEEecCCchhHHHHHhhhcC
Confidence 667776664 7899999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-12 Score=102.62 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=35.6
Q ss_pred hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 162 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 162 ~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
.+++.++++++||+..+..+++.+ |...+.... ..++|++++|||.|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~--k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN--KSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC--CCCCcEEEEeechhhH
Confidence 345778999999999999999876 776655432 2456777777777764
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=115.73 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 314 FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 314 ~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+.+++.+..|+|.+++||++|.|++++.+.+++++...
T Consensus 129 D~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 129 DIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred cHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 45778888999999999999999999999999865433
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=110.84 Aligned_cols=65 Identities=22% Similarity=0.128 Sum_probs=45.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.++||+|+++|..........+|++++|+|......-... ..+..+.. ..+| ++++.||+|+.+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~-----~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ-----VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCEEEEEEEecCCcc
Confidence 78999999998876666667789999999998763222211 22222332 2466 678899999863
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=107.29 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=49.1
Q ss_pred eeeeccccccc--hhHhHHhh------hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ--FPAMRRLS------IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~--~~~~~~~~------~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+-+-||.|-.. -..+...| ...+|.++.|.|.+++...++++.-.+-+.+... .++|+++|.||+|+..
T Consensus 242 vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 242 VLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLE 318 (411)
T ss_pred EEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccC
Confidence 55667777321 12233333 3478999999999999888888776666666532 4699999999999875
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=111.78 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIP 62 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~ 62 (373)
.++|+|+|+||||||||+|.|. .+..+++++. +|||...-...+.|.+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~-----~~drsIVSpv~GTTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALS-----REDRSIVSPVPGTTRDAIEAQVTVNGVP 317 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHh-----cCCceEeCCCCCcchhhheeEeecCCeE
Confidence 5799999999999999999999 6667777755 5666554444455444
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=117.45 Aligned_cols=50 Identities=8% Similarity=0.140 Sum_probs=32.9
Q ss_pred ceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHH-HHHHHHH
Q psy16673 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKE-VFRTFLT 346 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~e-lf~~i~~ 346 (373)
+++++|.||.|+...... ...+.+..+..++.+||+.+.|+++ +.+.+++
T Consensus 218 KPvI~VlNK~D~~~~~~~----l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~ 268 (396)
T PRK09602 218 KPMVIAANKADLPPAEEN----IERLKEEKYYIVVPTSAEAELALRRAAKAGLID 268 (396)
T ss_pred CCEEEEEEchhcccchHH----HHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence 345599999997533221 1122222356699999999999999 5555555
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-10 Score=99.10 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=51.2
Q ss_pred eeeeccccccchhH-----hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA-----MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-----~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||+||+..+-. .+...++++.++|+|+|+...+-.+.+..+.+.+.......+++.+-+.-+|.|+..
T Consensus 50 l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 50 LNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 99999999986643 356678999999999999966666666655555554444458999999999999975
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-11 Score=103.93 Aligned_cols=54 Identities=31% Similarity=0.496 Sum_probs=51.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
+++|||+|++.|.+++..+|+++.++++|||+++++||+.+..|+.++..+..+
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~ 110 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE 110 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC
Confidence 679999999999999999999999999999999999999999999999988543
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-11 Score=113.24 Aligned_cols=89 Identities=11% Similarity=0.167 Sum_probs=75.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-----------CCCCchhhcccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-----------FQFPAMRRLSIATA 292 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-----------~~~p~v~~~~~~~~ 292 (373)
.+++|||+|+++|..+++.++++++++|+|||++++.||+++..|++++...... .++|
T Consensus 84 ~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip---------- 153 (334)
T PLN00023 84 FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP---------- 153 (334)
T ss_pred EEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc----------
Confidence 4789999999999999999999999999999999999999999999999876421 1344
Q ss_pred ceeeeeccccccccch---h---hhhhHHHHHhhhcCC
Q psy16673 293 HAFLLVYSTTCLESFQ---S---VKCYFEEIREQRQDF 324 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r---~---v~~~~~~~~a~~~~~ 324 (373)
++|||||+||..++ . +..++++.+|+.+|+
T Consensus 154 --IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 154 --YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred --EEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 55999999997653 3 467899999998884
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-10 Score=109.92 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=52.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|||||+.|..++.....-+|.+++|.++.+ +.+.+.+.. ++. ...|++++.||+|+.+
T Consensus 57 itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak~-----a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 57 ITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AKA-----AGVPIVVAINKIDKPE 121 (509)
T ss_pred EEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HHH-----CCCCEEEEEecccCCC
Confidence 8999999999999999999999999999999988 455555432 222 5899999999999985
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=95.74 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEe
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~ 59 (373)
....-|+++|++|||||||+|.+++..- .+-++....++..++...+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~----LArtSktPGrTq~iNff~~~ 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKN----LARTSKTPGRTQLINFFEVD 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcc----eeecCCCCCccceeEEEEec
Confidence 3456799999999999999999995421 24444455566666666555
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=102.03 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=50.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
+.+||||||++|+.++|.||++|.++|+|||+|.+.+|..+..|.+++.-++..
T Consensus 62 laiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn 115 (209)
T KOG0080|consen 62 LAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN 115 (209)
T ss_pred EEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC
Confidence 459999999999999999999999999999999999999999999999988664
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=110.33 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=45.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEE-Eecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV-VAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~-ivgnK~Dl~~ 215 (373)
+.++||+|+++|.......+..+|++++|+|+....... ....+..+.. ..+|.+ ++.||.|+.+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~-----~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ-----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH-----cCCCeEEEEEEecCCcc
Confidence 789999999988766667778899999999997642222 1222233332 346754 5799999863
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=114.71 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=46.2
Q ss_pred eeeeccccccc----------hhHh-HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQ----------FPAM-RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~----------~~~~-~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|..+ |... ...++..+|++++|+|+++..+.....- ...+.+ ...|+++++||+|+
T Consensus 223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~~-----~~~~~ivv~NK~Dl 296 (435)
T PRK00093 223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRI-AGLALE-----AGRALVIVVNKWDL 296 (435)
T ss_pred EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCcEEEEEECccC
Confidence 78999999532 2222 2246788999999999999877766532 233322 35899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 297 ~~ 298 (435)
T PRK00093 297 VD 298 (435)
T ss_pred CC
Confidence 74
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=112.10 Aligned_cols=67 Identities=19% Similarity=0.068 Sum_probs=45.9
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.++||+|+++|.......+..+|++++|+|....-.-...+.|. .+... ...+++++.||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~----~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL----GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc----CCCcEEEEEEeccccc
Confidence 3889999999999776667788999999999987543222211221 12221 2335888999999864
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-11 Score=98.84 Aligned_cols=53 Identities=28% Similarity=0.446 Sum_probs=50.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
..+++|||+|+++|+.++..+|+++.++|+|||+|+.+||..++.|.-.+..+
T Consensus 70 iklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty 122 (193)
T KOG0093|consen 70 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY 122 (193)
T ss_pred EEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee
Confidence 56789999999999999999999999999999999999999999999888765
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-11 Score=106.09 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=90.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc------------------CCCCCchh
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ------------------DFQFPAMR 285 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~------------------~~~~p~v~ 285 (373)
.+++|||+|++.|..+++.+|++++++++|||++++.||+++..|++++..... ..++|
T Consensus 55 ~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P--- 131 (202)
T cd04102 55 FVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP--- 131 (202)
T ss_pred EEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce---
Confidence 478999999999999999999999999999999999999999999999977432 12345
Q ss_pred hccccccceeeeeccccccccchhhhhhH----HHHHhhhcCCeEEEeccCCCc----------CHHHHHHHHHH
Q psy16673 286 RLSIATAHAFLLVYSTTCLESFQSVKCYF----EEIREQRQDFQLLECSAKDNY----------NIKEVFRTFLT 346 (373)
Q Consensus 286 ~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~----~~~~a~~~~~~~~E~SAktg~----------nv~elf~~i~~ 346 (373)
++|||||.|+...|.++.+. ...+|.+.|++.++.+++++. .+...|+.+++
T Consensus 132 ---------iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 132 ---------LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred ---------EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 55999999998877666553 567789999999999988532 35566666665
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-10 Score=111.81 Aligned_cols=66 Identities=24% Similarity=0.134 Sum_probs=44.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|++.|.......+..+|++++|+|....-.-.....|. +.... ...|++++.||+|+.+
T Consensus 109 i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l---g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 109 FIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL---GIKHLVVAVNKMDLVD 174 (474)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh---CCCceEEEEEeecccc
Confidence 889999999998766666678999999999987642211111111 11111 2246788999999864
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=100.00 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=48.0
Q ss_pred eeeeccccccchhHhHHh---hhhhcCeEEEEEeCC-ChhhHHHHHHHHHHHHHHh-ccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRL---SIATAHAFLLVYSTT-CLESFQSVKCYFEEIREQR-QDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~---~~~~~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~-~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|+||+.+.+..... +...+-++|+|.|.. ....+..+.+++..+.... .....+|+.|+.||.|+..
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 899999999987753333 478899999999986 4555666655444443332 2346799999999999975
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-10 Score=107.75 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=52.9
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++.||+|+-+|+......+..++|+++|.|....-.-+.+..++-.+. ....++.|.||+|+..
T Consensus 125 ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPS 191 (650)
T ss_pred eEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCC
Confidence 349999999999999999999999999999999987544444444333332 4677888999999986
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=106.64 Aligned_cols=65 Identities=23% Similarity=0.133 Sum_probs=46.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+.||||+.+|.......+..+|++++|.|....-.-.. ...+..+.. ..+| ++++.||.|+.+
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~-----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ-----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEEEccCCCC
Confidence 7899999999887777777889999999999876432222 222223332 3567 678899999864
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-11 Score=100.85 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=62.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+++|||+||++|.++....|+++|+++++||++++.||+++..|.++...+..+.. -+.-+|||+|||.|+
T Consensus 60 lQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~---------Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 60 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQD---------PETFPFVILGNKIDV 130 (210)
T ss_pred EEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCC---------CCcccEEEEcccccC
Confidence 67999999999999999999999999999999999999999999999998876422 123457799999983
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.8e-11 Score=96.53 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=51.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
.+++|||+||++|+++++.||++|.+.++|||+|+++||+.+..|...++...+.
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~ 113 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP 113 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC
Confidence 3579999999999999999999999999999999999999999999998877654
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=110.92 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=47.7
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHH-------HHHHHHHHHHHHhccCCCc-cEEEeccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ-------SVKCYFEEIREQRQDFQEI-PIVVAGNKSDMT 214 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~-------~l~~~~~~i~~~~~~~~~~-pi~ivgnK~Dl~ 214 (373)
.+.+.|++|+++|.......++.+|++++|+|+.+ ..|+ .....+..+.. ..+ +++++.||.|+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~-----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT-----LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH-----cCCCcEEEEEEcccCC
Confidence 48999999999999888888999999999999987 3333 22222111221 345 578899999976
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-10 Score=114.79 Aligned_cols=66 Identities=18% Similarity=0.035 Sum_probs=44.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|+++|.......+..+|++++|+|......-.....+ ..+... ...+++++.||+|+.+
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----GIRHVVLAVNKMDLVD 171 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----CCCeEEEEEEeccccc
Confidence 78999999998876666678899999999998754322111111 112222 2356788999999863
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=88.32 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=37.0
Q ss_pred eeeeccccccchh---------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDLQFP---------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~~~~---------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.++||+|...-. ......+..+|++++|+|..++.. +....++++++ ...|+++|.||
T Consensus 49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 49 FILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp EEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH------TTSEEEEEEES
T ss_pred EEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh------cCCCEEEEEcC
Confidence 7799999954211 112223478899999999777322 22333334442 47899999887
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=106.67 Aligned_cols=65 Identities=22% Similarity=0.116 Sum_probs=47.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.++|++|+++|-......+..+|++++|+|......-.. .+++..+.. ..+| ++++.||.|+.+
T Consensus 146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~-----~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEecccccC
Confidence 8899999999998777777889999999999886533222 223333332 3567 778899999864
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-09 Score=106.01 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHH------HHhccCCCccEEEec-ccccccccccccccccceeeeccCCCCC--c---hhhhhcccccc
Q psy16673 181 SFQSVKCYFEEIR------EQRQDFQEIPIVVAG-NKSDMTSHHRAVHLEDVDILDTCGDLQF--P---AMRRLSIATAH 248 (373)
Q Consensus 181 s~~~l~~~~~~i~------~~~~~~~~~pi~ivg-nK~Dl~~~~r~~~~~~~~~~dtag~~~~--~---~~~~~s~~~a~ 248 (373)
+.+.+..|...+. ++. ...++|++-|- -|... ......++-+.||+|...- . .+....+..+|
T Consensus 186 ~lndivr~~~~l~~~~p~d~ya-~~~~~p~iev~f~hl~g----~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eAD 260 (741)
T PRK09866 186 SLNDLVRLAKALDVDFPFSAYA-AIEHIPVIEVEFVHLAG----LESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARAS 260 (741)
T ss_pred hHHHHHHHHHhhcCCCcHHHHh-hhhcCceeeeeeeeccc----cccccCCEEEEECCCCCCccchHHHHHHHHHHhhCC
Confidence 5666666665532 221 12456777443 35432 2233456778999997542 2 12334799999
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccch-----hhhhhHHHHHhhhc-
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ-----SVKCYFEEIREQRQ- 322 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r-----~v~~~~~~~~a~~~- 322 (373)
.+++|.|.+...+..+- .+.+.+.+... ..| +++|.||.|+.+.. .+.......+....
T Consensus 261 vVLFVVDat~~~s~~De-eIlk~Lkk~~K--~~P------------VILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i 325 (741)
T PRK09866 261 AVLAVLDYTQLKSISDE-EVREAILAVGQ--SVP------------LYVLVNKFDQQDRNSDDADQVRALISGTLMKGCI 325 (741)
T ss_pred EEEEEEeCCCCCChhHH-HHHHHHHhcCC--CCC------------EEEEEEcccCCCcccchHHHHHHHHHHHHHhcCC
Confidence 99999999886655542 23344433211 134 45999999985321 11111111222211
Q ss_pred -CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 -DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 -~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+|.+||++|.|++++++.+...-
T Consensus 326 ~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 326 TPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 23589999999999999999999843
|
|
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-10 Score=92.46 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=51.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||.+|+...+..+..||.+.+++|+|.|..|..-...... ++..+.+- +.++..++++.||.|...
T Consensus 64 ~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~--eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 64 FQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE--ELQHAKLLVFANKQDYSG 133 (182)
T ss_pred ceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH--hhcCceEEEEeccccchh
Confidence 9999999999999999999999999999999998764433322 22222221 225677888888888753
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=110.22 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=49.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.||+|+.+|.......++.+|++++|.|....-..+....|. .+.+ ..+|++++.||.|+..
T Consensus 77 ~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~-----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK-----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH-----cCCCEEEEEECCCCCC
Confidence 899999999988777777889999999999987654444433332 2333 3578899999999975
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=101.21 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=64.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+||||||+.|..+|+.+|+++|.+++||++.++.||+++.+ |+.++..+++. +|++ |||.|.|
T Consensus 55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~--vpii------------LVGtk~D 120 (198)
T KOG0393|consen 55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN--VPII------------LVGTKAD 120 (198)
T ss_pred EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC--CCEE------------EEeehHH
Confidence 6799999999999999999999999999999999999999888 99999999964 6665 9999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
|..+.
T Consensus 121 Lr~d~ 125 (198)
T KOG0393|consen 121 LRDDP 125 (198)
T ss_pred hhhCH
Confidence 98544
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-10 Score=91.97 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=87.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
||++||+.|+|||||++++.+.... +.-|-. .++...+...+..+. +........-+..+||++++++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~~~~IDTPGEyiE--------~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYYDNTIDTPGEYIE--------NPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEecccEEECChhhee--------CHHHHHHHHHHHhhCCEEEEEec
Confidence 8999999999999999999855331 111111 222222222222222 11222223336789999999999
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-HhHHhhhhhcCe
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP-AMRRLSIATAHA 169 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~-~~~~~~~~~~~~ 169 (373)
...............-++|++.|++|+|+...+. +.. ........+++.
T Consensus 73 at~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~------------------------------~i~~a~~~L~~aG~~~ 122 (143)
T PF10662_consen 73 ATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDA------------------------------NIERAKKWLKNAGVKE 122 (143)
T ss_pred CCCCCccCCchhhcccCCCEEEEEECccCccchh------------------------------hHHHHHHHHHHcCCCC
Confidence 8887777777777777999999999999662111 111 111222345666
Q ss_pred EEEEEeCCChhhHHHHHHHHH
Q psy16673 170 FLLVYSTTCLESFQSVKCYFE 190 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~ 190 (373)
+ +..+....+..+.+..|++
T Consensus 123 i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 123 I-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred e-EEEECCCCcCHHHHHHHHh
Confidence 5 6667777788888887765
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-10 Score=94.27 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=50.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~ 277 (373)
+++|||+|+++|++++..||+.+|+++++||+++..||+-+..|..++..+..
T Consensus 58 lqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999998755
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=114.29 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=52.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|......++..+|++++|+|.+..........|. .+.. ..+|++++.||.|+..
T Consensus 62 i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~-----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 62 INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK-----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH-----cCCCEEEEEECCCCCC
Confidence 999999999998888888899999999999998876665544443 2332 3689999999999875
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=99.70 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=48.8
Q ss_pred eeeeccccccch----hHhHHhhhh---hcCeEEEEEeCCChhh---HHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQF----PAMRRLSIA---TAHAFLLVYSTTCLES---FQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~~~~~~~---~~~~~i~v~dv~~~~s---~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+-|.+|..+= ..+-..|++ .+-.++.|.|++..+. .++.+....++..+.....+-|.+||.||+|+.
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 777888874322 234444444 4788889999886653 667777778888887666677888888888855
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=96.52 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=48.7
Q ss_pred eeeeccccccc-------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ-------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~-------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|.++ |+.....++...|.++.+.+..++.---....|.+-+... -+.+++++-|-+|...
T Consensus 89 l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 89 LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAE 162 (296)
T ss_pred eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhc
Confidence 89999999655 6677777888999888889988875333334444444433 3478889999999764
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-10 Score=105.33 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCceeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 140 PKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 140 ~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+..+.+++.||+|+-+|.-.....+..+.|.++|.|.+..-.-+.+...+-.+. .+..++-|.||+||+.
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle------~~LeIiPViNKIDLP~ 142 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPA 142 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH------cCcEEEEeeecccCCC
Confidence 345669999999999999888888999999999999988655555555444443 4677888999999986
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-10 Score=99.96 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=62.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
-.+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|.+++.+..+ ..|++ |||||
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lVgNK 118 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKML------------LVGCK 118 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCEE------------EEeEC
Confidence 3578999999999999999999999999999999999999998 789999988764 35655 99999
Q ss_pred cccccc
Q psy16673 302 TCLESF 307 (373)
Q Consensus 302 ~Dl~~~ 307 (373)
+|+.+.
T Consensus 119 ~DL~~~ 124 (182)
T cd04172 119 SDLRTD 124 (182)
T ss_pred hhhhcC
Confidence 998543
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=107.31 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=50.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|+.+|.......++.+|++++|.|....-.-.... .+..+.. ...|++++.||.|+..
T Consensus 75 i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~-----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 75 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK-----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCC
Confidence 899999999988888888899999999999988754333322 2222332 3588899999999985
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-09 Score=97.25 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=82.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee--cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE--DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
++....|+|.|.||||||||++.+++ ..|-+. .|+||.+.++....++
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~------AkpEvA~YPFTTK~i~vGhfe~~~------------------------ 214 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTT------AKPEVAPYPFTTKGIHVGHFERGY------------------------ 214 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhc------CCCccCCCCccccceeEeeeecCC------------------------
Confidence 44567899999999999999999983 345555 6688999988877663
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-------
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP------- 157 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~------- 157 (373)
.++|+.||+|.-+-+
T Consensus 215 ----------------------------------------------------------~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 215 ----------------------------------------------------------LRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred ----------------------------------------------------------ceEEEecCCcccCCChHHhcHH
Confidence 239999999942211
Q ss_pred -HhHHhhhhh-cCeEEEEEeCCChh--hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 158 -AMRRLSIAT-AHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 158 -~~~~~~~~~-~~~~i~v~dv~~~~--s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
......+++ +++++++||.+... +.+.=..++++++..- ..|+++|.||.|+.+
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f----~~p~v~V~nK~D~~~ 294 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF----KAPIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc----CCCeEEEEecccccc
Confidence 111122333 57888899876643 4454455777777763 488999999999875
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-10 Score=94.01 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=49.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 276 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~ 276 (373)
.+++||||||++|++++..||+++-+++++||+||+.||+.+..|.++...+.
T Consensus 59 klqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~ 111 (213)
T KOG0091|consen 59 KLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMAT 111 (213)
T ss_pred EEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhc
Confidence 36799999999999999999999999999999999999999999998877653
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=100.72 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=45.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEE-Eecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV-VAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~-ivgnK~Dl~~ 215 (373)
+.+.||+|+.+|.......+..+|++++|.|......-. ...++..+.. ..+|.+ ++.||.|+.+
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~-----~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ-----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH-----cCCCEEEEEEeecCCcc
Confidence 789999999888776667788999999999987643222 2223333333 247765 5789999863
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-10 Score=98.00 Aligned_cols=71 Identities=25% Similarity=0.319 Sum_probs=62.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|.+++.+.++ .+|++ |||||
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~--~~~ii------------lVgnK 114 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP--NTKVL------------LVGCK 114 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC--CCCEE------------EEEEC
Confidence 3477999999999999999999999999999999999999996 789999988764 35655 99999
Q ss_pred cccccc
Q psy16673 302 TCLESF 307 (373)
Q Consensus 302 ~Dl~~~ 307 (373)
+||.+.
T Consensus 115 ~DL~~~ 120 (178)
T cd04131 115 TDLRTD 120 (178)
T ss_pred hhhhcC
Confidence 999653
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=99.56 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=51.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|+..|.+++.....-+|.+++|....| +.+.+.|+.. + ...+|++++-||+|.+.
T Consensus 203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhA----k-----~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHA----K-----SANVPIVVAINKIDKPG 267 (683)
T ss_pred EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHH----H-----hcCCCEEEEEeccCCCC
Confidence 8899999999999999999999999999998877 4566655432 2 15899999999999875
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.98 E-value=9e-09 Score=91.01 Aligned_cols=69 Identities=23% Similarity=0.174 Sum_probs=40.8
Q ss_pred eeeeccccccchh--------HhH---HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFP--------AMR---RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~---~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.++||||..... .+. .....+.|++++|.++.. -+-+ -...++.+.+..+...-.+++++.|+.|.
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~ 128 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDD 128 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccc
Confidence 8899999954331 111 112356799999999876 2222 22334445444332233577888898887
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 129 l~ 130 (196)
T cd01852 129 LE 130 (196)
T ss_pred cC
Confidence 64
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-10 Score=96.30 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
-.+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|.+++....+ ++|++ |||||
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lvgnK 114 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP--NVPIV------------LVGTK 114 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEeC
Confidence 4577999999999999999999999999999999999999998 679999877653 46655 99999
Q ss_pred cccccchh
Q psy16673 302 TCLESFQS 309 (373)
Q Consensus 302 ~Dl~~~r~ 309 (373)
+|+.+.+.
T Consensus 115 ~Dl~~~~~ 122 (176)
T cd04133 115 LDLRDDKQ 122 (176)
T ss_pred hhhccChh
Confidence 99976543
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-09 Score=90.21 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=48.4
Q ss_pred eeeeccccccchhHhHHhhhh---hcCeEEEEEeC-CChhhHHHHHHH-HHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIA---TAHAFLLVYST-TCLESFQSVKCY-FEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~---~~~~~i~v~dv-~~~~s~~~l~~~-~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|.||+.+.+.-...++. .+-+++||.|. ........+.++ ++-+...+.-...+|+.|+.||.|+.-
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 789999999887654444555 68899999874 334444445443 343444322346899999999999974
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=109.07 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=50.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++...+..+|++++|+|+++ +.+++.+.. +.. ..+|+++++||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~----lk~-----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINI----LRQ-----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHH----HHH-----cCCCEEEEEECCCCcc
Confidence 8999999999999988888899999999999986 556665542 222 3579999999999964
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-09 Score=99.39 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=61.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|++++.+..+ ++|++ |||||
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lVgNK 126 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP--STRIL------------LIGCK 126 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 3478999999999999999999999999999999999999985 789999987654 35655 99999
Q ss_pred cccccc
Q psy16673 302 TCLESF 307 (373)
Q Consensus 302 ~Dl~~~ 307 (373)
+|+...
T Consensus 127 ~DL~~~ 132 (232)
T cd04174 127 TDLRTD 132 (232)
T ss_pred cccccc
Confidence 998643
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=99.78 Aligned_cols=66 Identities=21% Similarity=0.123 Sum_probs=46.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh-hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|++|++.|-......+..+|++++|.|+... ..-+..+.+ . +.... .-.++++|.||+|+.+
T Consensus 119 i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~-i~~~l---gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 119 VSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-A-AVEIM---KLKHIIILQNKIDLVK 185 (460)
T ss_pred EeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-H-HHHHc---CCCcEEEEEecccccC
Confidence 88999999999987777778899999999999863 121111121 1 22221 2346888999999874
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=101.31 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=45.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hH----HHHHHHHHHHHHHhccCCCcc-EEEeccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SF----QSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMT 214 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~----~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~ 214 (373)
.+.+.|++|+.+|.......+..+|++++|.|..... .| ...+.|. .+.. ..+| ++++-||.|..
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~-----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT-----LGVKQMIVCINKMDDK 158 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH-----cCCCeEEEEEEccccc
Confidence 3899999999999887777789999999999987632 11 1111222 2222 2455 67899999954
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-09 Score=97.32 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=60.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++..|++.+..... .++|++ +||||+
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~-~~~pii------------lVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELL------------LVGNKL 115 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCcEE------------EEEECc
Confidence 4567999999999999999999999999999999999999999999998876543 345655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (202)
T cd04120 116 D 116 (202)
T ss_pred c
Confidence 9
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-08 Score=87.70 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=51.6
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh----hhhhHHHHHhhhc
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS----VKCYFEEIREQRQ 322 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~----v~~~~~~~~a~~~ 322 (373)
++.++.++|+++..+... .....+ ..+=++++||+|+..... ...++.+.+ ..
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi-------------------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~--~~ 169 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI-------------------TRSDLLVINKIDLAPMVGADLGVMERDAKKM--RG 169 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh-------------------hhccEEEEEhhhccccccccHHHHHHHHHHh--CC
Confidence 467899999998766321 111111 112259999999974211 112222232 34
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++++|||++|+|++++|+.+.+.+
T Consensus 170 ~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 170 EKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999999754
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=98.22 Aligned_cols=65 Identities=23% Similarity=0.127 Sum_probs=45.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+.||+|+.+|..........+|++++|.|......-+. .+.+..+.. ..+| ++++.||.|+.+
T Consensus 126 i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~-----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 126 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred EEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEEEeeccCC
Confidence 7899999999987666666778999999999876432221 122222222 3577 567899999864
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=110.21 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=50.1
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.+|||+|+.+|.......++.+|++++|+|....-..+....|.. +.+ ..+|++++.||.|...
T Consensus 86 ~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 86 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred eEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH-----cCCCEEEEEEChhccc
Confidence 349999999999998888889999999999999877433332222322 222 3578889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=84.86 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=57.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+|.+|+..-+..+..|+..++++++.+|+.+.+-|...+.-++.+...- ....+|++|.|||+|...
T Consensus 66 ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 66 FTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPY 135 (193)
T ss_pred EEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCC
Confidence 8899999999888999999999999999999999988877655444433221 125799999999999985
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-09 Score=92.99 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=60.7
Q ss_pred CccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 201 EIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 201 ~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
.|-+-.+.....+.+ + ..++++||||||++|+++.|.|++++.++|+|||++++.||++..+|++.+.+.++.
T Consensus 54 TIGiDFlskt~~l~d--~---~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs 126 (221)
T KOG0094|consen 54 TIGIDFLSKTMYLED--R---TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS 126 (221)
T ss_pred eeeeEEEEEEEEEcC--c---EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC
Confidence 344444455555554 3 456789999999999999999999999999999999999999999999999887663
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-09 Score=94.54 Aligned_cols=66 Identities=39% Similarity=0.523 Sum_probs=61.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
++++||+|++.|..++..+++++++|++||+++++.||+.+..+++.+.+......+|++ +||||+
T Consensus 53 l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Piv------------lVGNK~ 118 (196)
T KOG0395|consen 53 LEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPII------------LVGNKC 118 (196)
T ss_pred EEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEE------------EEEEcc
Confidence 459999999999999999999999999999999999999999999999888887788887 889885
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-09 Score=94.92 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=60.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++..|++++.+..+ ++|++ |||||.
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~--~~pii------------lVGNK~ 120 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP--GVPKI------------LVGNRL 120 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECc
Confidence 4477999999999999999999999999999999999999999999999987653 46655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 121 D 121 (189)
T cd04121 121 H 121 (189)
T ss_pred c
Confidence 9
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-09 Score=94.73 Aligned_cols=73 Identities=21% Similarity=0.416 Sum_probs=62.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++.. |.+++....+ ++|++ |||||
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lvgNK 116 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP--NVPIL------------LVGTK 116 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEEeC
Confidence 346799999999999999999999999999999999999999974 8888876543 46765 99999
Q ss_pred cccccchh
Q psy16673 302 TCLESFQS 309 (373)
Q Consensus 302 ~Dl~~~r~ 309 (373)
.||.+.+.
T Consensus 117 ~DL~~~~~ 124 (191)
T cd01875 117 KDLRNDAD 124 (191)
T ss_pred hhhhcChh
Confidence 99976543
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-08 Score=90.48 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred eeeeccccccchh---HhHHhhhhh-----cCeEEEEEeCCChhhHHHHH--HHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFP---AMRRLSIAT-----AHAFLLVYSTTCLESFQSVK--CYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~---~~~~~~~~~-----~~~~i~v~dv~~~~s~~~l~--~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|+.++. .....+++. .+++++++|........... .|+....... ...|+++|.||+|+.
T Consensus 99 ~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 99 YVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKADLL 175 (253)
T ss_pred EEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhHhhc
Confidence 8899999987643 333333333 78999999996654333332 2333333222 478999999999997
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
+
T Consensus 176 ~ 176 (253)
T PRK13768 176 S 176 (253)
T ss_pred C
Confidence 5
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.1e-08 Score=90.80 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred eeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccccc
Q psy16673 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306 (373)
Q Consensus 227 ~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~ 306 (373)
+.+|+|...-.. .....+|.++++.+.......+.++ ..+.+. +-++|.||||+..
T Consensus 153 iieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~------------------aDIiVVNKaDl~~ 208 (332)
T PRK09435 153 LVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIMEL------------------ADLIVINKADGDN 208 (332)
T ss_pred EEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhhh------------------hheEEeehhcccc
Confidence 566666542211 1345688888885533333333322 112111 1259999999865
Q ss_pred chh---hhhhHHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 307 FQS---VKCYFEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 307 ~r~---v~~~~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
... ...+....+.. .+..|++.+||++|.||+++++.+.+...-.
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 332 22222333332 2346899999999999999999999865433
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=93.05 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+...++|+++|.+||||||++|++++.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999999954
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-09 Score=94.52 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=96.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|.+++.+.++ ++|++ |||||+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~--~~pii------------lvgNK~ 109 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE--NIPIV------------LCGNKV 109 (200)
T ss_pred EEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECc
Confidence 4578999999999999999999999999999999999999999999999988753 46665 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.. +.+..+. ..++...+++|+||||++|.||+++|+.+++.+
T Consensus 110 Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 110 DVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9864 4455443 467888899999999999999999999999865
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-09 Score=101.45 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+|+-|||..+.|||+|+.||++++|.... .+.+..+.+.+.+++....
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~l----------------------------- 78 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHL----------------------------- 78 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceE-----------------------------
Confidence 5789999999999999999999999987653 4445566677777666655
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+.|.+|. ....|....|
T Consensus 79 --------------------------------------------------------Llirdeg~~-----~~aQft~wvd 97 (749)
T KOG0705|consen 79 --------------------------------------------------------LLIRDEGGH-----PDAQFCQWVD 97 (749)
T ss_pred --------------------------------------------------------eeeecccCC-----chhhhhhhcc
Confidence 778888774 2344567899
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
++||||.+.+..+|+.++.+...+..++. ...+|++++|++.
T Consensus 98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~-r~~i~l~lvgtqd 139 (749)
T KOG0705|consen 98 AVVFVFSVEDEQSFQAVQALAHEMSSYRN-ISDLPLILVGTQD 139 (749)
T ss_pred ceEEEEEeccccCHHHHHHHHhhcccccc-cccchHHhhcCcc
Confidence 99999999999999999988877776654 3578888888753
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-09 Score=95.08 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..+++.+|+++|++++|||++++.||+++. .|..++....+ ++|++ |||||
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~--~~pii------------LVgnK 114 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP--NAKVV------------LVGCK 114 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEEEC
Confidence 35779999999999999999999999999999999999999995 47777765543 35655 99999
Q ss_pred cccccch
Q psy16673 302 TCLESFQ 308 (373)
Q Consensus 302 ~Dl~~~r 308 (373)
+|+....
T Consensus 115 ~DL~~~~ 121 (222)
T cd04173 115 LDMRTDL 121 (222)
T ss_pred cccccch
Confidence 9996543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=84.61 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=38.7
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhh--cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQR--QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~--~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++++||+|+.+.............+. ..++++++||++|.|++++|+.+.+.+
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred CCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3569999999975433222222222222 348999999999999999999998853
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-09 Score=90.98 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=61.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++.. |..++....+ ++|++ +||||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~--~~pii------------lvgnK 114 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP--KTPFL------------LVGTQ 114 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 346799999999999999999999999999999999999999975 8888877543 46655 99999
Q ss_pred cccccch
Q psy16673 302 TCLESFQ 308 (373)
Q Consensus 302 ~Dl~~~r 308 (373)
.|+....
T Consensus 115 ~Dl~~~~ 121 (175)
T cd01874 115 IDLRDDP 121 (175)
T ss_pred HhhhhCh
Confidence 9986543
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=89.95 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
....++|+++|.+|||||||+|.+++..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4557899999999999999999999553
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-09 Score=90.81 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=60.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|+..+.+... .++|++ |||||+
T Consensus 29 v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~pii------------lVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIA------------LVGNKT 95 (176)
T ss_pred EEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEE------------EEEECc
Confidence 3467999999999999999999999999999999999999999999998877643 245544 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 96 DL 97 (176)
T PTZ00099 96 DL 97 (176)
T ss_pred cc
Confidence 96
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-09 Score=89.70 Aligned_cols=68 Identities=32% Similarity=0.424 Sum_probs=60.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.||+++..|...+.+.....++|++ +||||+|
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii------------lvgNK~D 118 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV------------LVGNKVD 118 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEChh
Confidence 4679999999999999999999999999999999999999999999888876554566765 9999998
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-08 Score=87.43 Aligned_cols=112 Identities=29% Similarity=0.373 Sum_probs=100.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..+++.++++++++++|||++++.||+++..|...+.+.....++|++ +||||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv------------iv~nK~D 117 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII------------LVGNKVD 117 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999998886554556655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+...++..++...+++|++|||++|.|++++|+.+++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 118 LESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred chhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 98777888778888888889999999999999999999999874
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=86.96 Aligned_cols=112 Identities=32% Similarity=0.397 Sum_probs=101.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.+|+++..|.+++.+.....++|++ +||||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 117 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV------------LVGNKCD 117 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 3568999999999999999999999999999999999999999999999887655566655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..+++.++++|+||||++|.||+++|+.+++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 118 LEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 98888888888888988889999999999999999999999874
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.1e-09 Score=89.20 Aligned_cols=70 Identities=26% Similarity=0.481 Sum_probs=60.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.||+++.. |...+....+ ++|++ +||||.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~--~~pii------------lvgnK~ 115 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKL 115 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEeeCh
Confidence 46799999999999999999999999999999999999999974 8887776543 46655 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 116 Dl~~~ 120 (174)
T cd01871 116 DLRDD 120 (174)
T ss_pred hhccC
Confidence 99654
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-09 Score=84.25 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=49.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~ 277 (373)
.+++|||+|+++|+.+++.+|+++.+.+.|||++.+.++..+.+|....+....
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltn 114 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 114 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC
Confidence 367999999999999999999999999999999999999999999987766443
|
|
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-09 Score=85.56 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=49.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
-+++|||+||++|++++...++.|-+++++||+|+..||-++..|..++.-+
T Consensus 68 hLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h 119 (219)
T KOG0081|consen 68 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH 119 (219)
T ss_pred EEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999999999999998765
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=86.65 Aligned_cols=112 Identities=30% Similarity=0.394 Sum_probs=101.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.+|+++..|...+.+.....++|++ +||||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 117 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI------------LVGNKCD 117 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECCc
Confidence 4569999999999999999999999999999999999999999999998876655567766 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.++.++.+.+++..+++|+||||++|.||+++|+.+++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 118 LEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred chhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 98888888888888998899999999999999999999999874
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-09 Score=85.39 Aligned_cols=52 Identities=37% Similarity=0.510 Sum_probs=49.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
++.+|||+||++|.++-|.||++++++++|||+|++.||+.++.|..+++..
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m 114 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM 114 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999874
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-08 Score=92.58 Aligned_cols=69 Identities=22% Similarity=0.132 Sum_probs=46.0
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hHHHHHH--HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQSVKC--YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~~l~~--~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.|.|++|+-.|..-.....+.||++++|.|..+.+ +|+.--+ -.-.+.... .--.++++-||.|+.+
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl---Gi~~lIVavNKMD~v~ 159 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL---GIKQLIVAVNKMDLVS 159 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc---CCceEEEEEEcccccc
Confidence 4999999999888877777788999999999998763 1110000 111122222 2234677889999875
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-08 Score=88.70 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=60.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..+++.++++++++++|||++++.||+++..|++++.+..+. .+| ++||||+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~-~~p-------------ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIP-------------ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCE-------------EEEEEch
Confidence 35779999999999999999999999999999999999999999999988776432 233 3889999
Q ss_pred cccc
Q psy16673 303 CLES 306 (373)
Q Consensus 303 Dl~~ 306 (373)
|+..
T Consensus 115 Dl~~ 118 (182)
T cd04128 115 DLFA 118 (182)
T ss_pred hccc
Confidence 9864
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=90.20 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|+..+.+... ..+|++ +||||+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~-~~~piI------------lVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN-EDCLFA------------VVGNKL 110 (220)
T ss_pred EEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEE------------EEEECc
Confidence 3477999999999999999999999999999999999999999998877766432 245554 999999
Q ss_pred cccc
Q psy16673 303 CLES 306 (373)
Q Consensus 303 Dl~~ 306 (373)
|+..
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9864
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=86.12 Aligned_cols=111 Identities=9% Similarity=0.074 Sum_probs=86.8
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+++|..+++.++++++++++|||++++.+|+++..|+.++.......++|++ ||+||
T Consensus 52 ~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 119 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLL------------VFANK 119 (168)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEE------------EEEEC
Confidence 345789999999999999999999999999999999999999998877766654332345655 99999
Q ss_pred cccccchhhhhhHHHHHh---h--hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIRE---Q--RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a---~--~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+... +..++.+... + ...++++||||++|.||+++|+.|.+
T Consensus 120 ~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 120 QDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 998643 3333333332 1 23457999999999999999999875
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=88.22 Aligned_cols=68 Identities=29% Similarity=0.496 Sum_probs=59.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+++|||+|+++|..++..++++++++++|||++++.||+++..|...+..... ..++|++ +||||
T Consensus 48 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lvgNK 115 (190)
T cd04144 48 MLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM------------IVGNK 115 (190)
T ss_pred EEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE------------EEEEC
Confidence 367899999999999999999999999999999999999999999998877644 2345554 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 116 ~D 117 (190)
T cd04144 116 CD 117 (190)
T ss_pred hh
Confidence 98
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-08 Score=87.52 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=60.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..++..++++++++++|||++++.||+++..|+.++.......+.|++ +||||+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------iv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV------------LCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEeCc
Confidence 34789999999999999999999999999999999999999999999998876544445555 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 131 D 131 (180)
T cd04127 131 D 131 (180)
T ss_pred c
Confidence 9
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=85.98 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=95.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..+++..+..+|++++|||++++.||+++..|.+.+.+.+. .+|++ +||||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~pii------------iv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIV------------LCGNKV 114 (166)
T ss_pred EEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEE------------EEEEch
Confidence 4577999999999999999999999999999999999999999999999988765 56655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.. +.+. ..+..+++..+++|+||||++|.||+++|+.+++.+
T Consensus 115 Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 115 DIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred hccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9973 3333 345567777889999999999999999999999854
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-08 Score=80.93 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=50.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~ 277 (373)
.+++|||+||++|++++..||+.+|+.+++||++++.||++.+.|..++.++..
T Consensus 48 klqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k 101 (192)
T KOG0083|consen 48 KLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK 101 (192)
T ss_pred EEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999988743
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-08 Score=89.86 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=95.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|++++.+.+. ++|++ +||||+
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~--~~pii------------lvgNK~ 127 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIV------------LCGNKV 127 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCcEE------------EEEEch
Confidence 4577999999999999999999999999999999999999999999999987653 46655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.. +.+..++. .+++..+++||||||++|.||+++|+.+++.+
T Consensus 128 Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred hhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 9964 44444444 67778899999999999999999999999865
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=86.78 Aligned_cols=69 Identities=35% Similarity=0.505 Sum_probs=61.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|++.|..+++.++++++++++|||++++.+|+++..|.+++.+.....++|++ +||||+|
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pii------------iv~nK~D 121 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI------------LVGNKCD 121 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999998877555566755 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 122 l 122 (189)
T PTZ00369 122 L 122 (189)
T ss_pred c
Confidence 5
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-08 Score=87.86 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|+++|..+++.++++++++++|||++++.||+++..|+.++..... ...+|++ +|||
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pii------------lv~N 118 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCL------------LLAN 118 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEE------------EEEE
Confidence 467999999999999999999999999999999999999999999988876422 2345655 9999
Q ss_pred ccc
Q psy16673 301 TTC 303 (373)
Q Consensus 301 K~D 303 (373)
|+|
T Consensus 119 K~D 121 (201)
T cd04107 119 KCD 121 (201)
T ss_pred CCC
Confidence 999
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-09 Score=86.33 Aligned_cols=67 Identities=25% Similarity=0.396 Sum_probs=61.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+..+|||+|++.|.+++..||++|.+.++||+-|++.||+.+.+|++++...+.. +|.+ +|-||.|
T Consensus 70 r~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~--IPtV------------~vqNKID 135 (246)
T KOG4252|consen 70 RSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER--IPTV------------FVQNKID 135 (246)
T ss_pred HHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc--CCeE------------Eeeccch
Confidence 3688999999999999999999999999999999999999999999999998875 7766 8888888
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 136 l 136 (246)
T KOG4252|consen 136 L 136 (246)
T ss_pred h
Confidence 3
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-08 Score=84.15 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..++++++++++|||++++.||+.+..|.+.+...... ..| +++||||+|
T Consensus 52 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iiiv~nK~D 118 (166)
T cd04122 52 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-NTV------------IFLIGNKAD 118 (166)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCe------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999888765432 345 459999988
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-08 Score=85.86 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=60.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.||+++.. |...+....+ ++|++ +||||+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 115 (187)
T cd04132 50 ELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCP--GTPIM------------LVGLKT 115 (187)
T ss_pred EEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEeCh
Confidence 46799999999999999999999999999999999999999975 8877765432 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 116 Dl~~~~ 121 (187)
T cd04132 116 DLRKDK 121 (187)
T ss_pred hhhhCc
Confidence 987554
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=88.16 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
...++|+|||.||||||||+|+++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~ 43 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCK 43 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhc
Confidence 4467999999999999999999984
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-08 Score=83.78 Aligned_cols=112 Identities=8% Similarity=0.068 Sum_probs=86.0
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+++|..+++.++++++++++|||++++.+|+++..++..+.......++|++ |++||
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 110 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL------------VFANK 110 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE------------EEEEC
Confidence 345789999999999999999999999999999999999999998877766543332345555 99999
Q ss_pred cccccchhhhhhHHHHHh----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIRE----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.|+..... ..+..+.++ ...++.+++|||++|.||+++|+.|.+
T Consensus 111 ~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 111 QDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99864322 122223332 233567889999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.7e-08 Score=83.53 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=87.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
++++|++|+..+..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||.|+
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pil------------iv~NK~Dl 112 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPIL------------VLANKQDK 112 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEE------------EEEeCCCC
Confidence 468999999999999999999999999999999999999999998888765443456655 99999999
Q ss_pred ccchhhh----hhHHHHHhhhc--CCeEEEeccCCC------cCHHHHHHHHHH
Q psy16673 305 ESFQSVK----CYFEEIREQRQ--DFQLLECSAKDN------YNIKEVFRTFLT 346 (373)
Q Consensus 305 ~~~r~v~----~~~~~~~a~~~--~~~~~E~SAktg------~nv~elf~~i~~ 346 (373)
...+... ....+.++... .+++++|||++| .|+++.|++|++
T Consensus 113 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 113 KNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 7765322 11223444333 467888999998 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-08 Score=86.31 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=55.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+++|||+|++. .+++.++++++++++|||++++.||+++. .|.+++....+ .+|++ +||||+|
T Consensus 68 l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lvgNK~D 131 (195)
T cd01873 68 LRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP--RVPVI------------LVGCKLD 131 (195)
T ss_pred EEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEchh
Confidence 56999999986 36778999999999999999999999997 49988877653 45655 9999999
Q ss_pred ccc
Q psy16673 304 LES 306 (373)
Q Consensus 304 l~~ 306 (373)
+..
T Consensus 132 L~~ 134 (195)
T cd01873 132 LRY 134 (195)
T ss_pred ccc
Confidence 864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-08 Score=84.84 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=61.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..+++.++++++++++|||++++.+|+.+..|++++.+......+|+ ++||||.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i------------ilVgnK~ 116 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLL------------FLVGTKK 116 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeE------------EEEEECh
Confidence 3578999999999999999999999999999999999999999999999876544334454 4999999
Q ss_pred ccc
Q psy16673 303 CLE 305 (373)
Q Consensus 303 Dl~ 305 (373)
|+.
T Consensus 117 Dl~ 119 (170)
T cd04108 117 DLS 119 (170)
T ss_pred hcC
Confidence 984
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-08 Score=85.86 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=63.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..+++.++++++++++|||++++.||+++.. |...+....+ ++|++ +||||
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~--~~pii------------lvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP--GVKLV------------LVALK 113 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 356799999999999999999999999999999999999999974 8888876543 45655 99999
Q ss_pred cccccchhh
Q psy16673 302 TCLESFQSV 310 (373)
Q Consensus 302 ~Dl~~~r~v 310 (373)
+|+...+..
T Consensus 114 ~Dl~~~~~~ 122 (189)
T cd04134 114 CDLREARNE 122 (189)
T ss_pred hhhccChhh
Confidence 999776553
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=85.68 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=35.2
Q ss_pred eeeeccccccchhHhHHhhh--------hhcCeEEEEEeCCChh---hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSI--------ATAHAFLLVYSTTCLE---SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~dv~~~~---s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+-++|||||.++...+.... ...-+++++.|..... .|-. .++-.+.-+.. -..|.+.|.||+|+
T Consensus 93 y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~--~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 93 YLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLR--LELPHVNVLSKIDL 168 (238)
T ss_dssp EEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHH--HTSEEEEEE--GGG
T ss_pred EEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhh--CCCCEEEeeeccCc
Confidence 88999999998865555433 3456777888865443 3322 22222211110 37999999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 169 ~~ 170 (238)
T PF03029_consen 169 LS 170 (238)
T ss_dssp S-
T ss_pred cc
Confidence 86
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-08 Score=84.38 Aligned_cols=114 Identities=6% Similarity=0.035 Sum_probs=86.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+..|..+++.++++++++++|||++++.++++...|+..+.......++|++ +||||
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii------------lv~NK 123 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVIL------------VFANK 123 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEE------------EEEeC
Confidence 345789999999999999999999999999999999999999998887776554322345655 99999
Q ss_pred cccccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 302 TCLESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 302 ~Dl~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+.+... +....+...+....+.|++|||++|.||+++|+.|.+.
T Consensus 124 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 124 QDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred cCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99865432 11111111122234568899999999999999999875
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.6e-07 Score=84.62 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=52.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|+...+..|..++.+++++++|.|+++- ..+......++.+.+.. .....|++|++||.|+.
T Consensus 163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~-~~~~~pill~~NK~D~f 241 (317)
T cd00066 163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR-WFANTSIILFLNKKDLF 241 (317)
T ss_pred EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc-cccCCCEEEEccChHHH
Confidence 99999999999999999999999999999998863 22332223333333321 22579999999999988
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 242 ~ 242 (317)
T cd00066 242 E 242 (317)
T ss_pred H
Confidence 5
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-08 Score=81.34 Aligned_cols=111 Identities=27% Similarity=0.402 Sum_probs=98.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.+|+++..|...+.+.....+.|++ +|+||+|
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------vv~nK~D 117 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV------------LVGNKCD 117 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 3678999999999999999999999999999999999999999999998887655556655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+.. +.+...+...++...+++|+||||++|.|++++|+.+++.
T Consensus 118 l~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 118 LAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 876 5566677888888889999999999999999999999874
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-08 Score=82.44 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=59.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++||++|+++|..+++.++++++++++|||++++.||+++..|++.+....+ ..+|++ +||||.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~~ii------------lvgnK~ 115 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP-EGVQKI------------LIGNKA 115 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEECc
Confidence 3467999999999999999999999999999999999999999999998887643 245554 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (161)
T cd04117 116 D 116 (161)
T ss_pred c
Confidence 7
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-08 Score=82.08 Aligned_cols=110 Identities=26% Similarity=0.388 Sum_probs=93.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
-.+++|||+|++.|..+++.++++++++++|||++++.+|+++..|+..+.+..+ ++|++ +|+||+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~p~i------------vv~nK~ 114 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP--EIPCI------------VVANKI 114 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEE------------EEEECc
Confidence 3467999999999999999999999999999999999999999999999876543 35655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+... + .++...+++..++++++|||++|.|++++|+.+++.+.
T Consensus 115 Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 115 DLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred cCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 98532 2 23455667777899999999999999999999998653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-08 Score=86.79 Aligned_cols=69 Identities=26% Similarity=0.269 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeecc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..+.+|||+|++.|..+.+.+++++|++++|||++++.||+++..|.+.+.+.... .++| +++|||
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p------------iilVgN 117 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL------------VVLVGN 117 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce------------EEEEEE
Confidence 35789999999999999999999999999999999999999999999999886542 2334 459999
Q ss_pred ccc
Q psy16673 301 TTC 303 (373)
Q Consensus 301 K~D 303 (373)
|+|
T Consensus 118 K~D 120 (215)
T cd04109 118 KTD 120 (215)
T ss_pred Ccc
Confidence 999
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=81.44 Aligned_cols=69 Identities=43% Similarity=0.605 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeecc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..+.+|||+|+++|..++..+++.++++++|||++++.||+++..|++.+.+.... .++|++ +|||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lv~n 116 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIM------------LVGN 116 (165)
T ss_pred EEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEE------------EEEE
Confidence 45779999999999999999999999999999999999999999999888776432 346655 9999
Q ss_pred ccc
Q psy16673 301 TTC 303 (373)
Q Consensus 301 K~D 303 (373)
|+|
T Consensus 117 K~D 119 (165)
T cd04140 117 KCD 119 (165)
T ss_pred Ccc
Confidence 999
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.5e-08 Score=82.27 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=61.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++.+++++++|||++++.||+++.. |...+....+ ++|++ +||||+
T Consensus 47 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~--~~pii------------lv~nK~ 112 (174)
T smart00174 47 ELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP--NTPII------------LVGTKL 112 (174)
T ss_pred EEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEecCh
Confidence 46799999999999999999999999999999999999999975 8888877543 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 113 Dl~~~~ 118 (174)
T smart00174 113 DLREDK 118 (174)
T ss_pred hhhhCh
Confidence 997543
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.4e-08 Score=87.61 Aligned_cols=117 Identities=34% Similarity=0.487 Sum_probs=98.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--------CCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--------DFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--------~~~~p~v~~~~~~~~~~~ 295 (373)
.+++|||+|++.|..++..++..++++++|||++++.||+++..|.+++.+... ..++| +
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p------------i 116 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP------------M 116 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc------------E
Confidence 467999999999999999999999999999999999999999999999876532 12445 4
Q ss_pred eeeccccccccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
|+||||+|+...+.+..++.+.+.. ..+++|+||||++|.||+++|+.|++++....
T Consensus 117 IivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred EEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 5999999998777788777777654 35789999999999999999999999764433
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=80.69 Aligned_cols=113 Identities=31% Similarity=0.432 Sum_probs=101.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|...+.+.....++|++ +|+||+|
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------iv~NK~D 118 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI------------LVGNKAD 118 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE------------EEeeCcc
Confidence 4678999999999999999999999999999999999999999999988876555566765 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+..+++..+++..+++|+||||++|.||+++|+.+++..
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 119 LEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 988888888888889988899999999999999999999999753
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=80.77 Aligned_cols=69 Identities=39% Similarity=0.520 Sum_probs=61.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.+++.++++++|||++++.+|+++..|...+.+.....++|++ +||||+|
T Consensus 49 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------~v~nK~D 116 (164)
T smart00173 49 LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV------------LVGNKCD 116 (164)
T ss_pred EEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999888876555456655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 117 l 117 (164)
T smart00173 117 L 117 (164)
T ss_pred c
Confidence 4
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.8e-08 Score=82.44 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=60.8
Q ss_pred ccceeeeccCCCCCc-hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFP-AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~-~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|++.|. .+.+.+++++|++++|||++++.+|+++..|.+.+.......++|++ +||||
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK 118 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI------------LVGNK 118 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE------------EEEEC
Confidence 356799999999886 57888999999999999999999999999999999887665567766 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 119 ~D 120 (170)
T cd04115 119 CD 120 (170)
T ss_pred cc
Confidence 98
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.3e-07 Score=72.21 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEeccCCCcCHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~ 346 (373)
++|++||.++.||+++++-+..
T Consensus 122 ~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEEEeccCcccHHHHHHHHHh
Confidence 6899999999999999998875
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-08 Score=81.77 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=60.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC----CCCCchhhccccccceeeee
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD----FQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~----~~~p~v~~~~~~~~~~~ilv 298 (373)
..+++|||+|++.|..+++.++++++++++|||++++.+|+.+..|..++.+.... .+.|++ +|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii------------lv 116 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVV------------VC 116 (168)
T ss_pred EEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEE------------EE
Confidence 35779999999999999999999999999999999999999999999999887653 345554 99
Q ss_pred ccccc
Q psy16673 299 YSTTC 303 (373)
Q Consensus 299 gnK~D 303 (373)
+||+|
T Consensus 117 ~nK~D 121 (168)
T cd04119 117 ANKID 121 (168)
T ss_pred EEchh
Confidence 99999
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-07 Score=85.38 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+...++++++++++|||++++.||+++..|..++.........|+ ++||||+|
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~i------------ilvgNK~D 120 (211)
T cd04111 53 KLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVF------------ILVGHKCD 120 (211)
T ss_pred EEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeE------------EEEEEccc
Confidence 477999999999999999999999999999999999999999999999887654434444 49999988
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=80.81 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=54.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++. ..+++.++++++|||++++.||+++..|++++........+|++ +||||.|
T Consensus 48 ~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pii------------lvgnK~D 110 (158)
T cd04103 48 LLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLI------------LVGTQDA 110 (158)
T ss_pred EEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEeeHHH
Confidence 467999999975 34678899999999999999999999999999887654556655 9999988
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 111 l 111 (158)
T cd04103 111 I 111 (158)
T ss_pred h
Confidence 5
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=80.75 Aligned_cols=67 Identities=27% Similarity=0.496 Sum_probs=60.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|++.|..+++..+++++++++|||++++.||+++..|++.+....+ ..+|++ +||||.|
T Consensus 49 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~ii------------vvg~K~D 115 (162)
T PF00071_consen 49 NLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPII------------VVGNKSD 115 (162)
T ss_dssp EEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEE------------EEEETTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccce------------eeecccc
Confidence 478999999999999999999999999999999999999999999999999877 335544 9999998
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-07 Score=81.60 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=97.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+++||++|+++|..++..++++++++++|||++++.||+.+..|..++...... .++|++ +|||
T Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii------------lv~n 122 (170)
T cd04116 55 TLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV------------VLGN 122 (170)
T ss_pred EEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE------------EEEE
Confidence 4678999999999999999999999999999999999999999999888775432 345544 9999
Q ss_pred ccccccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 301 TTCLESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+|+. .+.++.++.+.+++..+ ++|+||||++|.|++++|+.+++.
T Consensus 123 K~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 123 KNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred Ccccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 99987 66777888888988887 589999999999999999999973
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-07 Score=81.69 Aligned_cols=71 Identities=28% Similarity=0.450 Sum_probs=59.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+++|||+|+++|..+++.++++++++++|||++++.||+++. .|...+....+ ++|++ +||||+
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 114 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP--KAPII------------LVGTQA 114 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEeeCh
Confidence 4679999999999999999999999999999999999999986 48887775432 35554 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 115 Dl~~~~ 120 (173)
T cd04130 115 DLRTDV 120 (173)
T ss_pred hhccCh
Confidence 986543
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-07 Score=82.71 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=54.2
Q ss_pred eeeeeeccccccchh-----HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFP-----AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~-----~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++||.+|++.+- .....-++..++.+.|||+...+-...+..+-..+.......+...+.+.-+|.|+..
T Consensus 53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 349999999998653 2344557889999999999887655555555444554554558888999999999985
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-07 Score=80.09 Aligned_cols=110 Identities=12% Similarity=0.184 Sum_probs=93.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+||++|+..|..+++.++++++++++|||++++.+|..+..|..++.... .++|++ +||||.
T Consensus 44 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~pii------------lv~NK~ 109 (164)
T cd04162 44 AIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLV------------VLANKQ 109 (164)
T ss_pred eEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEE------------EEEeCc
Confidence 457899999999999999999999999999999999999999998888776543 346655 999999
Q ss_pred ccccchhhhh----hHHHHHhhhcCCeEEEeccCC------CcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKC----YFEEIREQRQDFQLLECSAKD------NYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~----~~~~~~a~~~~~~~~E~SAkt------g~nv~elf~~i~~ 346 (373)
|+...+.+.. .....++...+++|+||||++ |+||+++|+.++.
T Consensus 110 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 110 DLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 9987776553 345667777889999999999 9999999999874
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-07 Score=80.52 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..++..++++++++++|||++++.+|+.+..|.+.+...... .+|+ ++||||+
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD-NAQV------------ILVGNKC 116 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCCE------------EEEEECc
Confidence 45789999999999999999999999999999999999999999999998765532 3454 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 117 Dl 118 (165)
T cd01865 117 DM 118 (165)
T ss_pred cc
Confidence 95
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=79.81 Aligned_cols=112 Identities=32% Similarity=0.387 Sum_probs=101.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|++.|..+++.+++.++++++|||++++.+|+.+..|.+.+.+.....++|++ ++|||.|
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------iv~nK~D 117 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV------------LVGNKAD 117 (168)
T ss_pred EEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE------------EEEEChh
Confidence 4679999999999999999999999999999999999999999999988876555566765 9999999
Q ss_pred cccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..+++.++ ++|++|||++|.||+++|+++++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 118 LEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred ccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 98888888888888888888 899999999999999999999974
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=86.01 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=80.7
Q ss_pred CCcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceee-eeeecceEEeeeeeEEeccCCccchhhhcccc
Q psy16673 3 PVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR-DFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHL 81 (373)
Q Consensus 3 ~~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (373)
+..+++.-+++.++|+.|+|||.|++.|++..+...+..+....|.- .+...+...-
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~---------------------- 475 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKY---------------------- 475 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccce----------------------
Confidence 45577788999999999999999999999888877655555533332 2222221111
Q ss_pred cceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHH
Q psy16673 82 EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRR 161 (373)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~ 161 (373)
+.+.|.+-. ....+..
T Consensus 476 ---------------------------------------------------------------LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 476 ---------------------------------------------------------------LILREIGED-DQDFLTS 491 (625)
T ss_pred ---------------------------------------------------------------EEEeecCcc-ccccccC
Confidence 233333221 1111111
Q ss_pred hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 162 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 162 ~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.- ..+|.+.++||.+++.+|+-+...++.-... ..+|+++|++|+|+..
T Consensus 492 ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~----~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 492 KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL----YKIPCLMVATKADLDE 540 (625)
T ss_pred cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc----cCCceEEEeeccccch
Confidence 11 5689999999999999999887654433222 6899999999999975
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7e-06 Score=70.88 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.1
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh--hcCC
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDF 324 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~--~~~~ 324 (373)
.+..++|+|++..+.- +...-|.+ -++=++|.||.|+...-..+-+.-..-++ .-.+
T Consensus 118 d~~~v~VidvteGe~~--------------P~K~gP~i-------~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~ 176 (202)
T COG0378 118 DHLRVVVIDVTEGEDI--------------PRKGGPGI-------FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEA 176 (202)
T ss_pred hceEEEEEECCCCCCC--------------cccCCCce-------eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCC
Confidence 3467888899887532 11123554 22457999999997654443332222222 2358
Q ss_pred eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~ 347 (373)
||+++|++||+|++++++.+...
T Consensus 177 ~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 177 PIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CEEEEeCCCCcCHHHHHHHHHhh
Confidence 99999999999999999988764
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-07 Score=81.63 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=84.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++++..+++.++++++++++|||++++.+|++...++..+.......++|+ ++|+||.
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi------------ilv~NK~ 128 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVL------------LVFANKQ 128 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCE------------EEEEeCC
Confidence 4578999999999999999999999999999999999999998876666544322223454 4999999
Q ss_pred ccccchhhhhhHHHHH----hhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIR----EQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~----a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+...... .+....+ .....++++||||++|.||+++|+.|++.
T Consensus 129 Dl~~~~~~-~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 129 DLPNAMST-TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CCCCCCCH-HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 98543221 1122222 22233578899999999999999999874
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=81.80 Aligned_cols=114 Identities=37% Similarity=0.455 Sum_probs=96.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|+..|..+++.++..++++++|||++++.+|+.+..|...+.+.....++|++ +|+||+|
T Consensus 48 ~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~NK~D 115 (198)
T cd04147 48 TLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV------------VVGNKAD 115 (198)
T ss_pred EEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEEccc
Confidence 4679999999999999999999999999999999999999999999988887665567766 9999999
Q ss_pred ccc-chhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 304 LES-FQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 304 l~~-~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+.. .+.+..+....... .++++|++|||++|.||+++|+.+++.+.
T Consensus 116 l~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 116 SLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 865 46666555544443 55789999999999999999999998654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-07 Score=81.66 Aligned_cols=108 Identities=6% Similarity=0.045 Sum_probs=83.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+||++|+++|..+++.++++++++++|||++++.+++++..++..+.......++|++ +||||.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii------------lv~NK~ 128 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL------------VFANKQ 128 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE------------EEEECC
Confidence 45789999999999999999999999999999999999999888766665443222245544 999999
Q ss_pred ccccchhhhhhHHHHHhhhcC--------CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQD--------FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~--------~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+..... ...+++..+ +.+++|||++|+||+++|+.|++.
T Consensus 129 Dl~~~~~-----~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 129 DLPNAMN-----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CCCCCCC-----HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 9865432 122332222 346799999999999999999875
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-07 Score=79.25 Aligned_cols=67 Identities=28% Similarity=0.393 Sum_probs=58.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|+++|..++..++++++++++|||++++.||.++..|+..+.+... .+.|++ +||||+|
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~~~i------------iv~nK~D 118 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKL------------LVGNKCD 118 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEE------------EEEEChh
Confidence 467999999999999999999999999999999999999999999999877642 235554 9999988
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=81.29 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=60.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..++++++++++|||++++.+|+++..|++.+....+ ++|++ +|+||+|
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~pii------------lv~nK~D 116 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE--HCKIY------------LCGTKSD 116 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC--CCCEE------------EEEEccc
Confidence 367999999999999999999999999999999999999999999998876532 45655 9999999
Q ss_pred cccc
Q psy16673 304 LESF 307 (373)
Q Consensus 304 l~~~ 307 (373)
+...
T Consensus 117 l~~~ 120 (193)
T cd04118 117 LIEQ 120 (193)
T ss_pred cccc
Confidence 8543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-06 Score=74.38 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=38.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgnK~Dl~~ 215 (373)
+.++||+|.- ..+ ......+|.++++.|......... ..++..+.. ...|. ++|.||.|+.+
T Consensus 85 i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~-----~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 85 LTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQV-----HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH-----cCCCeEEEEEeccccCC
Confidence 7889999853 222 233577999999999875433222 122333332 24554 45999999864
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-07 Score=79.44 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++..|...+.+... .++|++ +||||+|
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~i------------iv~nK~D 119 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS-EDVERM------------LVGNKCD 119 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999999887643 345554 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 120 l 120 (167)
T cd01867 120 M 120 (167)
T ss_pred c
Confidence 4
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=78.91 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=57.0
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh-----
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ----- 320 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~----- 320 (373)
-+|.++++.-..-....+-++.-+=++.. |+|.||+|....+....+....+..
T Consensus 142 ~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------------------i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~ 200 (266)
T PF03308_consen 142 MADTVVLVLVPGLGDEIQAIKAGIMEIAD---------------------IFVVNKADRPGADRTVRDLRSMLHLLRERE 200 (266)
T ss_dssp TSSEEEEEEESSTCCCCCTB-TTHHHH-S---------------------EEEEE--SHHHHHHHHHHHHHHHHHCSTSC
T ss_pred hcCeEEEEecCCCccHHHHHhhhhhhhcc---------------------EEEEeCCChHHHHHHHHHHHHHHhhccccc
Confidence 45677777777667777666653333322 4899999987766555554444442
Q ss_pred -hcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 321 -RQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 321 -~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
.|.-|++.|||.+|.||+++++.|.+........
T Consensus 201 ~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 201 DGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp TSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2346899999999999999999999865555444
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.1e-06 Score=78.44 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=37.1
Q ss_pred eeeeccccccccchhhhh---hHH---HHHhh---hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 295 FLLVYSTTCLESFQSVKC---YFE---EIREQ---RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~---~~~---~~~a~---~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
.++|.||+|+........ ... ..+.. .+..++++|||++|.|++++++.+.+...
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 359999999865432211 110 11111 23457999999999999999999998644
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-07 Score=78.72 Aligned_cols=68 Identities=29% Similarity=0.436 Sum_probs=60.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|...+..... ++|++ +|+||.
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~--~~p~i------------iv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG--DIPMV------------LVQTKI 116 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 3578999999999999999999999999999999999999999999998876543 46655 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 117 Dl 118 (162)
T cd04106 117 DL 118 (162)
T ss_pred hc
Confidence 96
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-07 Score=81.39 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|++.|..++..++++++++++|||++++.||+++..|++.+....+ .+|++ +||||+|
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~pii------------vVgNK~D 121 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD--DVCKV------------LVGNKND 121 (199)
T ss_pred EEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999998877553 34544 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 122 l 122 (199)
T cd04110 122 D 122 (199)
T ss_pred c
Confidence 5
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-07 Score=81.05 Aligned_cols=68 Identities=29% Similarity=0.492 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+.+|..++..++++++++++|||++++.+|+++..|...+.+.... .+|++ +||||+|
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~pii------------iv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE-DVVIM------------LLGNKAD 117 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCcEE------------EEEEccc
Confidence 4679999999999999999999999999999999999999999999988876432 45655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 118 l 118 (191)
T cd04112 118 M 118 (191)
T ss_pred c
Confidence 4
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-07 Score=82.89 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..++..++++++++++|||++++.+|+++..|+..+....+ .++|++ +||||+|
T Consensus 62 ~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~pii------------iv~nK~D 128 (216)
T PLN03110 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIM------------MAGNKSD 128 (216)
T ss_pred EEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEEChh
Confidence 567999999999999999999999999999999999999999999998877654 345655 9999998
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-07 Score=78.74 Aligned_cols=111 Identities=25% Similarity=0.392 Sum_probs=99.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+++|..+++.++.+++++++|||++++.+|+++..|+..+.+.... ++|+ ++||||+|
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~pi------------~vv~nK~D 119 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS-NIVI------------MLVGNKSD 119 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCeE------------EEEEECcc
Confidence 4679999999999999999999999999999999999999999999998876542 3454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++.+.++...+++|+||||++|.|++++|+.++..
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 120 LRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred ccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 98888888888889998889999999999999999999999874
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=71.92 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=37.7
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
|+-|+||.|.. +.++..++|+.-+- +.+|..-+.|++.+++.+-+...+.
T Consensus 241 ClYvYnKID~v-----s~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 241 CLYVYNKIDQV-----SIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred EEEEeecccee-----cHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceE
Confidence 56999999964 45566677776654 6678888899999999988765443
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-07 Score=77.13 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=84.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeecccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
+.++||+|++.|..++..++++++++++|+|++++.+|.....|...+.+... ..++|++ +|+||+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------iv~NK~ 114 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL------------FFANKM 114 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE------------EEEeCc
Confidence 56899999999999999999999999999999999999998888877765432 2345655 999999
Q ss_pred ccccchh-hhhhHHHHHhh--hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQS-VKCYFEEIREQ--RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~-v~~~~~~~~a~--~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.+... ........++. ...+++++|||++|.|++++|+.|.+
T Consensus 115 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 115 DLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 9865432 11111222222 22456999999999999999999875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.8e-07 Score=75.63 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=43.7
Q ss_pred eeeeccccccc----hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.++||||... ...+...++..+|++++|.+.+...+-.....|.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence 99999999632 2367788889999999999998866555555555554433 33377887874
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-07 Score=79.78 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=91.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.+++.+..|..++.......+.|++ +|+||+
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~i------------iv~NK~ 119 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVL------------VLANKQ 119 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEE------------EEEECc
Confidence 45789999999999999999999999999999999999999998888888776554556655 999999
Q ss_pred ccccchhhhhhHHHHHh------hhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 303 CLESFQSVKCYFEEIRE------QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a------~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
|+..... .++.+.+. ...++++++|||++|.||+++|+.|++.+...+.
T Consensus 120 D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 120 DLPNALS--VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred CccccCC--HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 9864322 22222222 1124678999999999999999999987644433
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-07 Score=78.30 Aligned_cols=68 Identities=28% Similarity=0.421 Sum_probs=59.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..+++.++++++|||++++.||+++..|..++.+... .++|++ +||||.|
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvi------------vv~nK~D 120 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN-SNMTIM------------LIGNKCD 120 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEE------------EEEECcc
Confidence 577999999999999999999999999999999999999999999999887643 245655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 121 l 121 (168)
T cd01866 121 L 121 (168)
T ss_pred c
Confidence 4
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-07 Score=78.04 Aligned_cols=109 Identities=7% Similarity=0.083 Sum_probs=88.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|+..+..++..++++++++++|||++++.+|+++..|...+.+.....+.|++ +|+||+|+
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~Dl 112 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL------------IFANKQDV 112 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE------------EEEeCcCc
Confidence 458999999999999999999999999999999999999999988888765433335544 99999999
Q ss_pred ccchhhhhhHHHHHhhhc------CCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQSVKCYFEEIREQRQ------DFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~~------~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
... ++.++.+.++... .++|+||||++|.||+++|+.+++.
T Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 113 AGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred ccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 643 4555555554322 2378999999999999999999874
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-07 Score=77.94 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=99.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.+..+.+..+..++++++|||++++.+|+++..|++.+.... .++|++ +||||+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i------------lv~nK~ 117 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGV------------LVGNKM 117 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEE------------EEEECc
Confidence 346799999999999999999999999999999999999999999999888764 235655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.+.+.+....++.++...+++|++|||++|.||+++|+.+++..
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 9988888888888888888899999999999999999999999853
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-07 Score=77.36 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=59.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|+..|..+++.++++++++++|||++++.+|+++.. |...+... ..+.|++ +||||+|
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~pii------------vv~nK~D 115 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYL------------LVGTQID 115 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEE------------EEeEchh
Confidence 5689999999999999999999999999999999999999975 77777654 2345655 9999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
+.+..
T Consensus 116 l~~~~ 120 (174)
T cd04135 116 LRDDP 120 (174)
T ss_pred hhcCh
Confidence 86543
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-07 Score=79.55 Aligned_cols=68 Identities=28% Similarity=0.427 Sum_probs=59.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..++...+++++++++|||++++.+|+++..|+.++....+. ..| +++||||+
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~-~~~------------~ivv~nK~ 115 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE-NVI------------KVIVANKS 115 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCe------------EEEEEECC
Confidence 34679999999999999999999999999999999999999999999998876543 244 45999998
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (188)
T cd04125 116 D 116 (188)
T ss_pred C
Confidence 8
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.7e-07 Score=76.79 Aligned_cols=68 Identities=35% Similarity=0.421 Sum_probs=57.0
Q ss_pred cceeeeccCCCC-CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQ-FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~-~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+++|||+|+.+ +......+++.++++++|||++++.||+++..|...+..... ..++|++ +||||
T Consensus 48 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii------------lv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVI------------LVGNK 115 (165)
T ss_pred EEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEC
Confidence 467999999986 345567789999999999999999999999999998887654 4456655 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 116 ~D 117 (165)
T cd04146 116 AD 117 (165)
T ss_pred Cc
Confidence 99
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.9e-06 Score=73.82 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
++..+-|||.||.|.+++|..+-+.+...
T Consensus 238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 238 SLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred hCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 56789999999999999999988766544
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-07 Score=77.91 Aligned_cols=111 Identities=24% Similarity=0.311 Sum_probs=98.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++...++.++++++|||++++.||+.+..|...+..... .++|++ +|+||+|
T Consensus 53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~i------------vv~nK~D 119 (165)
T cd01864 53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA-SNVVLL------------LIGNKCD 119 (165)
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999999877542 345655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..+++..++ .++||||++|.|++++|+.+++.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 120 LEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 988888888888899988876 69999999999999999999873
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=83.79 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee--cceeeeeeecceEEe
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE--DLYSRDFHVGAVTIK 59 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~--d~~~~~~~~~~~~~~ 59 (373)
+++.-.++|+|-||||||||+|..+... .-+. .|+|+.+-++...++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad------vevqpYaFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD------DEVQPYAFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc------cccCCcccccchhhhhhhhhh
Confidence 5566789999999999999888777331 2222 335555555555444
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=8e-06 Score=81.04 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.0
Q ss_pred eeeecccccccc----chh-------hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 295 FLLVYSTTCLES----FQS-------VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 295 ~ilvgnK~Dl~~----~r~-------v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++|.+|+|... ... .-...-+.++..+|+.+|.||++...|++.+++.|...+
T Consensus 199 i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 199 IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 349999999632 111 222335677788999999999999999999998877643
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=82.85 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=53.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||.+|+...+..|..++.+++++++|.|+++- ..++.....++.+.+.. ...+.|+++++||.|+.
T Consensus 186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK~D~~ 264 (342)
T smart00275 186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNKIDLF 264 (342)
T ss_pred EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEecHHhH
Confidence 89999999999999999999999999999999863 22333333344443321 23679999999999998
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 265 ~ 265 (342)
T smart00275 265 E 265 (342)
T ss_pred H
Confidence 5
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=92.23 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
..++++||+|+.+|.......++.+|++++|.|....-......-|.. +.. ..+|++++.||.|+.
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH-----CCCCEEEEEECCccc
Confidence 448999999999999888888899999999999887544333333433 322 468999999999997
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=73.92 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=61.4
Q ss_pred hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHH
Q psy16673 238 AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 317 (373)
Q Consensus 238 ~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~ 317 (373)
.+.....+++|.+++|+|++++....+. .+...+. ..+.| +++|.||+|+....... ... .
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~----~~~~p------------~iiv~NK~Dl~~~~~~~-~~~-~ 64 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL----ELGKK------------LLIVLNKADLVPKEVLE-KWK-S 64 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH----hCCCc------------EEEEEEhHHhCCHHHHH-HHH-H
Confidence 4555667789999999999886654432 2222221 11244 45999999985432221 111 2
Q ss_pred HhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 318 REQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 318 ~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+....+.+++.+||++|.|++++++.+.+.+
T Consensus 65 ~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 65 IKESEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred HHHhCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 3344678899999999999999999998754
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.8e-07 Score=75.81 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=98.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||.|++.|..+....+++++++++|||++++.+|+.+..|...+.+......+|++ +||||+|
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~------------iv~nK~D 117 (161)
T cd01863 50 KLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM------------LVGNKID 117 (161)
T ss_pred EEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE------------EEEECCc
Confidence 4679999999999988888999999999999999999999999999999888776667765 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+. .+.+..++...++...+++|++|||++|.|++++|+.+++.
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 118 KE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 97 34455667788888889999999999999999999999873
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=82.62 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++.+++|+|+|.+|+|||||+|.+.+
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999999999999963
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-07 Score=79.68 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=57.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|+++|..++..+++.++++++|||++++.+|+++.. |...+.........|+ ++||||+
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~------------ilv~NK~ 130 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK------------MLVGNKV 130 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE------------EEEEECc
Confidence 46799999999999999999999999999999999999999987 6666655544434554 4999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 131 D 131 (211)
T PLN03118 131 D 131 (211)
T ss_pred c
Confidence 8
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-07 Score=76.42 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|++.|..++...+++++++++|||++++.+|+++..|+.++..... .++|++ +|+||+|
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~ii------------vv~nK~D 116 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS-PNIVVI------------LVGNKSD 116 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEEchh
Confidence 467999999999999999999999999999999999999999999988876543 245544 9999998
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.1e-07 Score=77.40 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=85.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..++..++++++++++|||++++.+|++...|...+.......++|++ +|+||+|
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK~D 126 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL------------ILANKQD 126 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEECcc
Confidence 3569999999999989999999999999999999999999998888777654333345655 9999999
Q ss_pred cccchhhhhhHHHHHh-----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIRE-----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a-----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+..... .++.+.+. ...+++|+||||++|.|++++|+.++.
T Consensus 127 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 127 LPGALS--EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cccCCC--HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 965432 22222222 234679999999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-06 Score=75.55 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
++|+++|..|+||||++|.+++...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~ 25 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEV 25 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999995543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.9e-07 Score=76.88 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=87.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.++|++|+..|...+..++++++++++|||++++.+|.....+...+.+......+|++ +++||
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~v------------iv~NK 125 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL------------VLANK 125 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEE------------EEEEC
Confidence 456789999999999999999999999999999999999998888877666554433345655 99999
Q ss_pred cccccchhhhhhHHHHHh----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIRE----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+..... ..+..+.+. ...++++++|||++|.||+++|+.|++
T Consensus 126 ~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 126 QDLKGAMT-PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCCCCC-HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 99865321 112233332 345678999999999999999999875
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=73.07 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=39.8
Q ss_pred eeecccccc----ccchh-------hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 296 LLVYSTTCL----ESFQS-------VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 296 ilvgnK~Dl----~~~r~-------v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
++|..|||. +.... .-....+.++.++|...|.+|+|...||+-+..-|+.
T Consensus 226 lVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 226 LVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred EEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 399999997 22221 1233456778889999999999999999999999986
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=98.30 E-value=9e-07 Score=74.97 Aligned_cols=110 Identities=14% Similarity=0.224 Sum_probs=85.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||++|+..+..++..++..++++++|||++++.++..+..|..++.+.....+.|++ +|+||+|+
T Consensus 46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 113 (160)
T cd04156 46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV------------LLANKQDL 113 (160)
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE------------EEEECccc
Confidence 568999999999988888999999999999999999999998888777654433356655 99999998
Q ss_pred ccc---hhhhhhH-HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 305 ESF---QSVKCYF-EEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 305 ~~~---r~v~~~~-~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
... +.+.... .+.++...++++++|||++|.||+++|+.|++
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 114 PGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 542 2222111 12233345678999999999999999999875
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=76.39 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=61.3
Q ss_pred CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHH
Q psy16673 236 FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 315 (373)
Q Consensus 236 ~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~ 315 (373)
|..+...++..++++++|+|+++.... |...+.... .+.| +++|+||+|+...... .+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~--~~~~------------~ilV~NK~Dl~~~~~~-~~~~ 83 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG--GNNP------------VILVGNKIDLLPKDKN-LVRI 83 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc--CCCc------------EEEEEEchhcCCCCCC-HHHH
Confidence 466778889999999999999986421 222221111 1234 4599999998643322 1222
Q ss_pred HHHh-----hhcCC---eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 316 EIRE-----QRQDF---QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 316 ~~~a-----~~~~~---~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+. ...+. ++|++||++|.|++++++.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 84 KNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 2222 22333 689999999999999999998854
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-06 Score=90.05 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=50.3
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
..+.+.||+|+.+|.......++.+|++++|.|....-......-| ..+.+ ..+|++++.||+|+.
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH-----cCCCEEEEEEChhhh
Confidence 3489999999999988888888999999999998775333332223 33332 358999999999997
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=91.64 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=49.5
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+.++||+|+.+|.......++.+|++++|.|....-.......|.. +.+ ...|.+++.||.|+..
T Consensus 87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~-----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR-----ERVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH-----cCCCeEEEEECchhhc
Confidence 348999999999998888888999999999999876533333233332 222 2457789999999863
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-06 Score=74.77 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=81.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|+..|..+++.++..++++++|+|++++.++.....++..+.+.....++|++ +|+||+|+
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii------------iv~nK~Dl 112 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL------------VFANKQDM 112 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE------------EEEeCCCC
Confidence 568999999999999999999999999999999998888777755544433222345655 99999998
Q ss_pred ccchhhhhhHHHHHh----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 305 ESFQSVKCYFEEIRE----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
...... .+..+.+. ...+++++||||++|.||+++|+.+++
T Consensus 113 ~~~~~~-~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 113 PGALSE-AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCH-HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 654321 11112221 223468999999999999999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=73.36 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=87.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+..+..+....+.+++++++|||++++.++.....+...+.......+.|++ +|+||+|
T Consensus 44 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii------------iv~nK~D 111 (158)
T cd00878 44 SFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL------------IFANKQD 111 (158)
T ss_pred EEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE------------EEeeccC
Confidence 3569999999999999999999999999999999999999998888877765544455655 9999999
Q ss_pred cccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+...+ .+....+........+++++|||++|.|++++|+.|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 112 LPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 87654 22222222212345679999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=74.16 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=37.0
Q ss_pred eeeeccccccccch--hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r--~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
-++|.||.|+.... .+..-.........+++++++||++|+|+++++++|.+
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45999999997532 23222222222234688999999999999999999976
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=74.93 Aligned_cols=111 Identities=24% Similarity=0.177 Sum_probs=87.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|.+.+......+++.++++++|||++++.+|+++. .|.+.+...++ ++|++ +|+||+
T Consensus 48 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~--~~pvi------------iv~nK~ 113 (166)
T cd01893 48 PTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV--KVPII------------LVGNKS 113 (166)
T ss_pred EEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEch
Confidence 4679999999988877777889999999999999999999986 48887776554 56655 999999
Q ss_pred ccccchhh--hhhHHHHHhhhc-C-CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSV--KCYFEEIREQRQ-D-FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v--~~~~~~~~a~~~-~-~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.+.+.. ..+....++..+ + .+|+||||++|.|++++|+.+.+.+
T Consensus 114 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 114 DLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 99776543 123333333333 2 4899999999999999999999854
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-05 Score=71.08 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=58.1
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh-----
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ----- 320 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~----- 320 (373)
.+|.++++--..-....|-++.-.=++.. |+|.||.|.........+....+..
T Consensus 164 ~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------------------i~vINKaD~~~A~~a~r~l~~al~~~~~~~ 222 (323)
T COG1703 164 MADTFLVVMIPGAGDDLQGIKAGIMEIAD---------------------IIVINKADRKGAEKAARELRSALDLLREVW 222 (323)
T ss_pred hcceEEEEecCCCCcHHHHHHhhhhhhhh---------------------eeeEeccChhhHHHHHHHHHHHHHhhcccc
Confidence 45666666555556666666553333322 3899999976654443333333332
Q ss_pred ---hcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccCC
Q psy16673 321 ---RQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355 (373)
Q Consensus 321 ---~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~~ 355 (373)
-|.-|.+.|||.+|+|++++++.+.+-.+-....+
T Consensus 223 ~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 223 RENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred cccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 23468999999999999999999998665555544
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-06 Score=83.66 Aligned_cols=71 Identities=11% Similarity=-0.001 Sum_probs=43.7
Q ss_pred eeeeccccccchh-------Hh---HHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFP-------AM---RRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~-------~~---~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.++||+|..... .+ ...++. +.|++++|..+........-..++..+.+..+..---.++||.|+.|
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 8899999965421 11 111333 47999999887643332222356666666665444455789999988
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
...
T Consensus 248 ~lp 250 (763)
T TIGR00993 248 SAP 250 (763)
T ss_pred cCC
Confidence 874
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8e-06 Score=75.33 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=42.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+.|.+|++-.-+..-+...--|+.++|.+.+.+ .+-|++..+ ++. .--.++|+-||.||.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al--eIi------gik~iiIvQNKIDlV~ 154 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL--EII------GIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH--hhh------ccceEEEEecccceec
Confidence 388999999976554443334445999999998763 455554321 111 2345789999999986
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-06 Score=74.60 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=98.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..+..+....++.++++++|||++++.+|+++..|.+.+....+. ++|++ +++||.|
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~ii------------lv~nK~D 116 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN-DVIIV------------LVGNKTD 116 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCEEE------------EEEEChh
Confidence 4679999999999999999999999999999999999999999999988765442 45655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++...+++..+++++++||++|.|++++|+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 117 LSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 97778888888889998889999999999999999999999873
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=75.44 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=84.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|+..+..++..++.+++++++|+|++++.++.....+..++.+.....++|++ +|+||.
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pil------------iv~NK~ 128 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFL------------ILGNKI 128 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEE------------EEEeCc
Confidence 45678999999999999999999999999999999999998888877776654333455655 999999
Q ss_pred ccccchhhhhhHHHHHh--h---------hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIRE--Q---------RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a--~---------~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+..... ..+..+.+. + .....+++|||++|.|++++|+.|..
T Consensus 129 Dl~~~~~-~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 129 DAPYAAS-EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccCCCC-HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 9854221 111222221 1 12346999999999999999999976
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-06 Score=80.12 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=61.2
Q ss_pred cccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 244 IATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
..++|.+++|+|++++.++... ..|...+.. .++|++ +|+||+|+........+ .....+..
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~i------------IVlNK~DL~~~~~~~~~-~~~~~~~~ 140 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPI------------IVLNKIDLLDDLEEARE-LLALYRAI 140 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEE------------EEEEhHHcCCCHHHHHH-HHHHHHHC
Confidence 4788999999999988776554 556655443 245544 99999999644332222 22333556
Q ss_pred CCeEEEeccCCCcCHHHHHHHHH
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+++++++||++|.|++++++.+.
T Consensus 141 g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 141 GYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred CCeEEEEeCCCCccHHHHHhhcc
Confidence 88999999999999999998764
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=76.84 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=93.7
Q ss_pred cceeeeccCCCCCch--------hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccc
Q psy16673 224 DVDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAH 293 (373)
Q Consensus 224 ~~~~~dtag~~~~~~--------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~ 293 (373)
.+.+|||+|...|.. .+..+++.+|++++|||++++.||+.+..|++.+.+... ..++|++
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii--------- 120 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV--------- 120 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE---------
Confidence 356899999765532 234467899999999999999999999999998887652 3456665
Q ss_pred eeeeeccccccccchhhhhhHHHHHh-hhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIRE-QRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a-~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+||||+|+...+.+..++.+.++ +.++++|+||||++|.||+++|+.+++.+.
T Consensus 121 ---ivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 121 ---VVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred ---EEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 99999999887888877777765 467899999999999999999999998543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-06 Score=74.31 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=85.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..|..++...+.+++++++|+|++++.+++....|...+.+.....++|++ +++||+|
T Consensus 51 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------lv~NK~D 118 (167)
T cd04160 51 RLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL------------ILANKQD 118 (167)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEEccc
Confidence 4568999999999999999999999999999999999999988888877765444456655 9999999
Q ss_pred cccchhhhhhHHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+...... .+..+.+.. ..++++++|||++|.|++++|+.|++
T Consensus 119 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 119 LPDALSV-EEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccCCCH-HHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 8553221 111222211 13578999999999999999999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.3e-07 Score=91.53 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=68.1
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.|..++..++..+|++++|||+++..+.+....+. .+.. .++|+ ++++||+|+
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~l~~----~~vpi------------IVv~NK~Dl 133 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM----YKTPF------------VVAANKIDR 133 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-HHHH----cCCCE------------EEEEECCCc
Confidence 669999999999999999999999999999999854433332211 1111 23554 499999998
Q ss_pred ccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHH
Q psy16673 305 ESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~ 342 (373)
.. .++...+++|+|+||+.+.++..-|+
T Consensus 134 ~~----------~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 134 IP----------GWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred cc----------hhhhccCchHHHHHHhhhHHHHHHHH
Confidence 64 34566789999999999987765443
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=74.71 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=58.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++.+++++++|||++++.+|+++.. |...+....+ +.|++ +|+||+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 115 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP--NVPII------------LVGNKK 115 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEeeCh
Confidence 46799999999999998889999999999999999999999965 8777765432 45655 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 116 Dl~~~ 120 (175)
T cd01870 116 DLRND 120 (175)
T ss_pred hcccC
Confidence 98643
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-06 Score=75.05 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=95.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.-.+..|||+|++.+..++.-+|-++.+++++||++.+.++.++..|++.+.+.|.. +|++ ++|||
T Consensus 58 ~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N--iPiv------------~cGNK 123 (216)
T KOG0096|consen 58 QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN--IPIV------------LCGNK 123 (216)
T ss_pred cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC--CCee------------eeccc
Confidence 455779999999999999999999999999999999999999999999999998885 7766 99999
Q ss_pred cccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.|..... .....-.+.+..++.|+|.||+++.|.+.-|..+++.
T Consensus 124 vDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 124 VDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred eeccccc--cccccceeeecccceeEEeecccccccccchHHHhhh
Confidence 9986654 1222334557778999999999999999999999984
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.8e-07 Score=71.25 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=52.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++|+.|++.+.......+..++++++|||++++.||+.+..+...+..... ..++|++ +||||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pii------------lv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPII------------LVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEE------------EEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEE------------EEEeccC
Confidence 56889999988877666669999999999999999999998777666655543 2346765 9999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=74.83 Aligned_cols=66 Identities=23% Similarity=0.142 Sum_probs=43.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+-||||++.|-.-.....+.||..|++.|.-.. -++.-+ -...+.... .--.++++-||+||.+
T Consensus 88 FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTr-RHs~I~sLL---GIrhvvvAVNKmDLvd 153 (431)
T COG2895 88 FIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTR-RHSFIASLL---GIRHVVVAVNKMDLVD 153 (431)
T ss_pred EEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhH-HHHHHHHHh---CCcEEEEEEeeecccc
Confidence 88999999999976666667889999999998331 111111 112222222 2234677889999986
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-06 Score=80.68 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=64.8
Q ss_pred hhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHH
Q psy16673 238 AMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 316 (373)
Q Consensus 238 ~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~ 316 (373)
.+...++.++|.+++|+|++++. ++..+..|...... .++|+ ++|+||+||...... ..+.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~------------ILVlNK~DLv~~~~~-~~~~~ 143 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEI------------VLCLNKADLVSPTEQ-QQWQD 143 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCE------------EEEEEchhcCChHHH-HHHHH
Confidence 44455688999999999999865 44556666654422 23454 499999999654332 22222
Q ss_pred HHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 317 IREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 317 ~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.+ ..+|++++++||++|.|++++++.+..
T Consensus 144 ~~-~~~g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 144 RL-QQWGYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred HH-HhcCCeEEEEEcCCCCCHHHHhhhhcc
Confidence 22 467889999999999999999998864
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-06 Score=78.35 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=65.0
Q ss_pred ccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh
Q psy16673 243 SIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 321 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~ 321 (373)
.+.++|.+++|+|++++. ++..+..|...+... ++|+ ++|+||+|+...... .........
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~ip~------------iIVlNK~DL~~~~~~--~~~~~~~~~ 136 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----GIEP------------VIVLTKADLLDDEEE--ELELVEALA 136 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----CCCE------------EEEEEHHHCCChHHH--HHHHHHHHh
Confidence 478899999999999998 888888887665532 3454 499999999654221 122333345
Q ss_pred cCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.+.+++++||++|.|+++++..+..
T Consensus 137 ~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CCCeEEEEECCCCccHHHHHhhhcc
Confidence 7899999999999999999987763
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.1e-06 Score=82.38 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=52.9
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+++.||+|+-+|.......++.+|++++++|+...-.+..=+...+.+. .+.|+++|.||.|..-
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRLI 263 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHHH
Confidence 349999999999999999999999999999999988766654222222222 5799999999999763
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=73.24 Aligned_cols=111 Identities=27% Similarity=0.342 Sum_probs=99.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|++.+..+++.++..++++++|||++++.+++.+..|.+++...... ++|++ +|+||+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pii------------iv~nK~D 116 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN-NISLV------------IVGNKID 116 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCeEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999988876554 56655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++.+.+++..++++++|||++|.|++++|+.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 98888877778888888899999999999999999999999875
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-06 Score=74.94 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|++.+..+++.++.++|++++|||++++.+|+.+..|++.+... .++|++ +|+||+|
T Consensus 55 ~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~i------------iv~NK~D 119 (169)
T cd01892 55 YLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCL------------FVAAKAD 119 (169)
T ss_pred EEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEE------------EEEEccc
Confidence 4568999999999999999999999999999999999999998888765321 245655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCe-EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQ-LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~-~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+.+.+...+.+.+++.++++ +++|||++|.|++++|+.+++.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 120 LDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 9777766666677788888874 79999999999999999999865
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-05 Score=68.80 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
...+|+++|+.|+||||+++.+++..|
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 345799999999999999999996553
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-06 Score=77.25 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=55.2
Q ss_pred ccceeeeccCCCCCchhhhhccc-cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIA-TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~-~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++ ..++..++. +++++++|||++++.||+++..|..++.......++|++ +|+||
T Consensus 50 ~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pii------------lV~NK 115 (221)
T cd04148 50 STLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPII------------LVGNK 115 (221)
T ss_pred EEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEC
Confidence 346799999998 334555666 999999999999999999999999988876554566655 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 116 ~D 117 (221)
T cd04148 116 SD 117 (221)
T ss_pred hh
Confidence 99
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.1e-06 Score=82.07 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=50.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|++.|..++......||.+|+|.|+.. +.+.+++.. ++. +..|++|+.||+|..-
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~-----rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRM-----RKTPFIVALNKIDRLY 606 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHh-----cCCCeEEeehhhhhhc
Confidence 6778999999999999999999999999999865 445555432 222 6899999999999763
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=77.09 Aligned_cols=67 Identities=27% Similarity=0.406 Sum_probs=58.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|...+..... ..+|++ +|+||+|
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~-~~~pii------------iv~nK~D 122 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIM------------LIGNKCD 122 (210)
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999988766543 245555 9999998
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=73.04 Aligned_cols=111 Identities=24% Similarity=0.316 Sum_probs=99.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+++|..++..++++++++++|||++++.+|+....|+..+..... ..+|++ +++||.|
T Consensus 51 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~ii------------vv~nK~D 117 (163)
T cd01860 51 KFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIA------------LVGNKAD 117 (163)
T ss_pred EEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999998887654 345655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++...+....+++++||||++|.|++++|+.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 118 LESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 98777778888888888889999999999999999999999984
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=74.87 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=58.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++..+++++++||++++.+|+++.. |.+.+....+ .+|++ +||||+
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~--~~pii------------lvgnK~ 115 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP--NVPVI------------LVGLKK 115 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEeeCh
Confidence 46799999999998888888999999999999999999999975 8888876544 36655 999999
Q ss_pred cccc
Q psy16673 303 CLES 306 (373)
Q Consensus 303 Dl~~ 306 (373)
|+..
T Consensus 116 Dl~~ 119 (187)
T cd04129 116 DLRQ 119 (187)
T ss_pred hhhh
Confidence 9854
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-06 Score=72.80 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=92.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+++||+.|++.|..+++.+++.++++++|||++++.+|..... |...+..... ++|++ +||||+
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i------------vv~nK~ 114 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP--NVPII------------LVGTKI 114 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEEccH
Confidence 46799999999998888999999999999999999999988766 7777666543 56665 999999
Q ss_pred ccccch-----------hhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQ-----------SVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r-----------~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+...+ .+..+++..++...++ +|+|+||++|.|++++|+.+++
T Consensus 115 Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 115 DLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 986554 3456778888888887 9999999999999999999986
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-06 Score=76.52 Aligned_cols=114 Identities=28% Similarity=0.313 Sum_probs=87.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc-hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S-~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
-.+.+|||+|++.|..+++.++.+++++++|||.++..+ ++....|..++...++ ...| +++|+||
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~------------iilv~nK 120 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVP------------ILLVGNK 120 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCce------------EEEEecc
Confidence 346799999999999999999999999999999999555 5556669989888775 2345 4599999
Q ss_pred cccccch------------hhhhhHHHHHhhhc---CCeEEEeccC--CCcCHHHHHHHHHHHhh
Q psy16673 302 TCLESFQ------------SVKCYFEEIREQRQ---DFQLLECSAK--DNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 302 ~Dl~~~r------------~v~~~~~~~~a~~~---~~~~~E~SAk--tg~nv~elf~~i~~~~~ 349 (373)
+|+...+ .+........+... ...+++|||+ ++.||+++|..+++...
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 9997764 33333333332222 2349999999 99999999999998763
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-06 Score=71.72 Aligned_cols=113 Identities=27% Similarity=0.355 Sum_probs=100.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..+..++...++.+++++++||++++.+|+++..|...+.+.....++|++ +|+||+|
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------iv~NK~D 116 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL------------LVGNKCD 116 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEccc
Confidence 4679999999999999999999999999999999999999999999988887665567766 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+...+...+++.++++|+++||++|.|++++|+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 117 LEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred cccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 977666677777788888899999999999999999999998754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-06 Score=69.78 Aligned_cols=86 Identities=24% Similarity=0.224 Sum_probs=68.5
Q ss_pred ccccceeeeccCCCCC-chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 221 HLEDVDILDTCGDLQF-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~-~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
..+.+.+.||+|...+ ..+...+.+-+|+|++|||..+++||+.+..+..+|.++.....+|++ +.|
T Consensus 58 arE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiV------------VLa 125 (198)
T KOG3883|consen 58 AREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIV------------VLA 125 (198)
T ss_pred hhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEE------------EEe
Confidence 4566889999998877 678888999999999999999999999999999999999988889987 666
Q ss_pred cccccccchhhhhhHHHHHhhhc
Q psy16673 300 STTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
||+ ++.-..+-....|+.|
T Consensus 126 N~r----dr~~p~~vd~d~A~~W 144 (198)
T KOG3883|consen 126 NKR----DRAEPREVDMDVAQIW 144 (198)
T ss_pred chh----hcccchhcCHHHHHHH
Confidence 653 3333334444555554
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-06 Score=72.20 Aligned_cols=112 Identities=29% Similarity=0.364 Sum_probs=99.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|+..|..++...++.++++++|||++++.+++.+..|+..+...... .+|++ +|+||+|
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~-~~piv------------vv~nK~D 116 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP-NVVIM------------LVGNKSD 116 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCeEE------------EEEEchh
Confidence 4679999999999999999999999999999999999999999999988877542 45655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+..+.++.++...+++|+|+||++|.|++++|+.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 117 LEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 988777777888888888899999999999999999999999854
|
Rab GTPases are implicated in vesicle trafficking. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.4e-06 Score=80.82 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhh---
Q psy16673 234 LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--- 310 (373)
Q Consensus 234 ~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v--- 310 (373)
+.|..+.+.++..++.+++|+|+++.. ..|.+++.+... +.| +++|+||+|+.....-
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~--~~p------------iilV~NK~DLl~k~~~~~~ 111 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG--GNP------------VLLVGNKIDLLPKSVNLSK 111 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC--CCC------------EEEEEEchhhCCCCCCHHH
Confidence 456677788888999999999997754 234455555432 234 4599999998653221
Q ss_pred hhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 311 KCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 311 ~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~ 347 (373)
..++.+.+++..++ .++++||++|.|++++|+.+.+.
T Consensus 112 ~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 112 IKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11222234556676 48999999999999999999764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.5e-06 Score=72.08 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=97.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+||++|++.|..++..+++++++++++||++++.+|+++..|.+.+..... ..++|++ +|+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------lv~n 117 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV------------VLGN 117 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE------------EEEE
Confidence 467899999999999999999999999999999999999999999887766544 2245654 9999
Q ss_pred ccccccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCLESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+...+.+..++.+.+.+..+ ++++++||++|.|++++|+.+++.+.
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 118 KIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred CcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99998666666677777777776 89999999999999999999998653
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=76.92 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=63.4
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh--hhhhHHHHHhhhc
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS--VKCYFEEIREQRQ 322 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~--v~~~~~~~~a~~~ 322 (373)
.++|.+++|++++...++..+..|...... .++|. ++|+||+|+..... ...+.. ...+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~------------VIVlNK~DL~~~~~~~~~~~~~-~~y~~~ 181 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEP------------LIVLNKIDLLDDEGRAFVNEQL-DIYRNI 181 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCE------------EEEEECccCCCcHHHHHHHHHH-HHHHhC
Confidence 568899999999999999999998764432 23454 49999999965432 222222 223457
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+++++++||++|.|++++++.+..
T Consensus 182 g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 182 GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 899999999999999999998875
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.2e-06 Score=69.85 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhccc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+++++|.+|||||||+|+++...+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999996644
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.2e-05 Score=71.47 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=49.2
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++++||+|+++|+.-...-+..+|..+.|.|.-..-.-..++ +++ +.+. +++||+-.-||.|...
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-Lfe-Vcrl----R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFE-VCRL----RDIPIFTFINKLDREG 147 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH-HHH-HHhh----cCCceEEEeecccccc
Confidence 3999999999999987777788899999999986532222222 222 2222 6899999999999764
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.5e-06 Score=72.31 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=101.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||.|+..|..++..++..+++++++||+++..+|+.+..|+..+.+.....+.|++ +|+||+|
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------lv~NK~D 117 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV------------LVGNKSD 117 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEchh
Confidence 3578999999999999999999999999999999999999999998888776554456655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+...+.+..++...+++.++++|+++||++|.|+.++|..+++.+....
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 118 LHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred hhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9877777777778888888999999999999999999999998765443
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.7e-06 Score=70.86 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
..++|+++|.+|||||||+|++...
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC
Confidence 4578999999999999999999843
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.6e-05 Score=71.93 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
++-|.++|+.|+|||||+|+|+..
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhh
Confidence 678999999999999999999955
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=74.33 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
++|.|||.||||||||+|++++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~ 25 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA 25 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999954
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-06 Score=71.36 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.++|+++|.||||||||+|++++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 579999999999999999999943
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-05 Score=72.14 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+..+.+++++|.+|||||||+|-++.-
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~ 159 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRV 159 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhh
Confidence 345789999999999999999999844
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.8e-06 Score=70.20 Aligned_cols=111 Identities=27% Similarity=0.368 Sum_probs=97.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|++|+..|...+..++..++++++|||++++.+|+.+..|..++..... .++|++ +|+||+|
T Consensus 57 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~~i------------~v~NK~D 123 (169)
T cd04114 57 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN-NKVITI------------LVGNKID 123 (169)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEECcc
Confidence 356899999999999888999999999999999999999999999988876543 245544 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+..+.+++...+++++|||++|.|++++|+.+++.
T Consensus 124 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 98888888888888888888999999999999999999999974
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.3e-06 Score=73.03 Aligned_cols=111 Identities=19% Similarity=0.289 Sum_probs=92.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..++..++..++++++|||++++.+|+++..|+..+.+... ++|++ ++|||+
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~i~------------lv~nK~ 123 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE--NIPIV------------LVGNKV 123 (215)
T ss_pred EEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECc
Confidence 4577999999999999999999999999999999999999999999998876543 45554 899999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+... .+..+ ...+++..++.|+|+||++|.|++++|..+++.+.
T Consensus 124 Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 124 DVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred cCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 98643 23322 23567778899999999999999999999998653
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.2e-05 Score=71.70 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
|+|||.||||||||+|++++.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~ 21 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA 21 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC
Confidence 579999999999999999954
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=67.59 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=85.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|+..|..++..++..++++++|+|+++..++.....++..+.......++|++ +|+||+
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK~ 111 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLL------------VLGNKN 111 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEE------------EEEeCc
Confidence 45789999999999999999999999999999999999998888777766554333345554 999999
Q ss_pred ccccchhhhhh---HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCY---FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~---~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.+....... ..........++++++||++|.|++++|+.+++
T Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 112 DLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 98665433211 111112234578999999999999999999976
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=67.55 Aligned_cols=27 Identities=15% Similarity=0.492 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccC
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYS 36 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~ 36 (373)
.|+|+|+|.+|+|||||+|.|+.....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccc
Confidence 589999999999999999999965443
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.1e-06 Score=84.60 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCC---ccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~---~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
+.++||+|++.|..++...+..+|++++|+|+++ +.+++.+.. +.. .++|+ ++++||
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpi------------IvviNK 132 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPF------------VVAANK 132 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCE------------EEEEEC
Confidence 5699999999999999988999999999999998 444444332 111 24554 499999
Q ss_pred cccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+.. .++...+++|+++|++++.++.+.|+..+..+
T Consensus 133 ~D~~~----------~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev 169 (586)
T PRK04004 133 IDRIP----------GWKSTEDAPFLESIEKQSQRVQQELEEKLYEL 169 (586)
T ss_pred cCCch----------hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99852 34445578999999999999999998877543
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=69.67 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=82.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..|..+...++++++++++|||++++.++++...|..... .++|+ ++|+||+|
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~i------------iiv~NK~D 130 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEI------------IPVINKID 130 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCE------------EEEEECCC
Confidence 35699999999999999999999999999999999888888776654321 23454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCCe---EEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQ---LLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~---~~E~SAktg~nv~elf~~i~~~ 347 (373)
+.+.+. ....+.+++.++++ ++++||++|.|++++|+.+++.
T Consensus 131 l~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 131 LPSADP--ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred CCcCCH--HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 865332 22334556666664 9999999999999999999874
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.6e-05 Score=65.69 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=92.0
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..-.+.+||..||.+++.+++.|+++++++|+|.|.++++.+.+.+.....+........+|++ +.+|
T Consensus 59 kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~ll------------v~aN 126 (181)
T KOG0070|consen 59 KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLL------------VFAN 126 (181)
T ss_pred cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEE------------EEec
Confidence 3455789999999999999999999999999999999999999988866666666555566666 9999
Q ss_pred ccccccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 301 TTCLESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 301 K~Dl~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|.|+.+.-. ++...+..--......+-.|+|.+|.|+.|.++.+...+
T Consensus 127 KqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 127 KQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred hhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 999876654 332222222233446689999999999999999999854
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.8e-06 Score=70.84 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=86.1
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|++|+..+..++..++++++++++|+|+++..+|+....+...+.+.....+.|++ +++||+|+
T Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi------------vv~NK~Dl 132 (190)
T cd00879 65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL------------ILGNKIDL 132 (190)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE------------EEEeCCCC
Confidence 458999999998888888999999999999999999999888888777765444456665 99999998
Q ss_pred ccchhhhhhHHHHHhhh----------------cCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQSVKCYFEEIREQR----------------QDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~----------------~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.. .+..++.+.+... ..+++++|||++|+|++++|+.+++.
T Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 133 PG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 53 3344444443321 23679999999999999999999863
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=68.81 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=47.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|.||+|+-+|-......++-.|+++++.|.....--+. +.......+ ...+.++|-||+|..+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~-----~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALA-----LGLKPIVVINKIDRPD 134 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHH-----cCCCcEEEEeCCCCCC
Confidence 349999999999999999999999999999999876321110 111111111 3566677889999876
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.7e-05 Score=74.88 Aligned_cols=68 Identities=24% Similarity=0.176 Sum_probs=44.9
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHH----HHHHHH--HHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS----VKCYFE--EIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~----l~~~~~--~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+.|++|+..|-.-.......+|.+++|.|.+-. .||. -.+..+ .+.+.. .--.++++-||.|+.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L---gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL---GISQLIVAINKMDLVS 329 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc---CcceEEEEeecccccC
Confidence 389999999988877666667889999999998653 3332 111111 112221 2344678889999886
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=67.40 Aligned_cols=112 Identities=38% Similarity=0.497 Sum_probs=100.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|+.|+..+..++...+..++++++|||++++.+++++..|...+........+|++ +|+||+|
T Consensus 48 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------vv~nK~D 115 (160)
T cd00876 48 TLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV------------LVGNKCD 115 (160)
T ss_pred EEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECCc
Confidence 4678999999999999999999999999999999999999999999888877654456655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..++..++++|+++||++|.|++++|+.|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 116 LENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 98878888888999999889999999999999999999999873
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-05 Score=68.46 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+..++++++|.+|||||||+|+++...+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3457999999999999999999996654
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=68.76 Aligned_cols=63 Identities=25% Similarity=0.248 Sum_probs=43.7
Q ss_pred eeeeccccccchhHh--HHhhhhhcCeEEEEEeCCChhhH---HHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPAM--RRLSIATAHAFLLVYSTTCLESF---QSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~--~~~~~~~~~~~i~v~dv~~~~s~---~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+.||.|+|.|-.. +-..-...|-.+++...++.-+- +++- +.-. -.+|++++-||+|+..+
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLg-----i~~a----~~lPviVvvTK~D~~~d 270 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLG-----IALA----MELPVIVVVTKIDMVPD 270 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhh-----hhhh----hcCCEEEEEEecccCcH
Confidence 788999999999653 33344557888999888774322 2221 1111 47999999999999864
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.7e-05 Score=67.31 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...+++++|.+|||||||+|++...
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999843
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-05 Score=69.10 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=81.6
Q ss_pred eeeeccccccchh-------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccc
Q psy16673 145 VDILDTCGDLQFP-------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHH 217 (373)
Q Consensus 145 ~~i~D~~g~~~~~-------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~ 217 (373)
+++.|.+|..+-. .......+.++.+++|.|+..+-+...+-+ .++.-..-....-|--+...|.|...
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie--~eleg~girlnk~pp~i~~kkKdkgG-- 183 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIE--KELEGFGIRLNKQPPNIGTKKKDKGG-- 183 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHH--HhhhcceeeccCCCCCccccccccCc--
Confidence 8888888743211 122233567899999999999887776533 12221111112222222233444332
Q ss_pred cccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 218 r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
-...... .....-.++...+-..++.+.+-||+|.-. ++..+...+- -+| ++.
T Consensus 184 Inlt~~~------LdlD~~rsil~eyR~hsAdi~Lr~DaT~Dd-------LIdvVegnr~--yVp------------~iy 236 (358)
T KOG1487|consen 184 INLTGTH------LDLDLQRSILSEYRIHSADIALRFDATADD-------LIDVVEGNRI--YVP------------CIY 236 (358)
T ss_pred eeeecch------hhHHHHHHHHHHhhhcchheeeecCcchhh-------hhhhhccCce--eee------------eee
Confidence 0000000 000111122223333344455566666532 2223332221 234 558
Q ss_pred eccccccccchhhhhhHHHHHhhhcCCe-EEEeccCCCcCHHHHHHHHHH
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQRQDFQ-LLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~~~~~-~~E~SAktg~nv~elf~~i~~ 346 (373)
+.||.|...-. .+.-...+| .+.+||.++.|++++++.+-.
T Consensus 237 vLNkIdsISiE--------ELdii~~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 237 VLNKIDSISIE--------ELDIIYTIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred eecccceeeee--------ccceeeeccceeecccccccchHHHHHHHhh
Confidence 99999953321 112223344 799999999999999998865
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=66.90 Aligned_cols=107 Identities=12% Similarity=0.179 Sum_probs=82.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|+..+......++++++++++|+|+++..++.....+...+.......++|++ +++||+
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------vv~nK~ 125 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL------------VFANKQ 125 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEECC
Confidence 45778999999998888888999999999999999999998888777666554443456655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcC--------CeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQD--------FQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~--------~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+....... .+....+ .++++|||++|.|++++|++|++
T Consensus 126 D~~~~~~~~-----~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 126 DLATAAPAE-----EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCccCCCHH-----HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 986543221 1222222 35789999999999999999986
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.3e-05 Score=69.33 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=50.8
Q ss_pred ccchhHhHHhhhhhcCeEEEEEeCCChh-hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 153 DLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~v~dv~~~~-s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++|..+.+.+++++|++++|||+.++. +|+.+..|+..+.. ..+|++||+||+||.+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLD 81 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCC
Confidence 3778888889999999999999999877 99999999986653 5799999999999964
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=73.33 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...++|+++|.||||||||+|++++.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999954
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=97.82 E-value=4e-05 Score=66.42 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=85.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||..|+..++.+++.++.+++++|+|+|.++...+++.......+.......++|++ +++||.|+
T Consensus 60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL------------Il~NK~D~ 127 (175)
T PF00025_consen 60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL------------ILANKQDL 127 (175)
T ss_dssp EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE------------EEEESTTS
T ss_pred EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEE------------EEeccccc
Confidence 458899999999999999999999999999999999998888877777665544456655 99999998
Q ss_pred ccchhhh-hhHH---HHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQSVK-CYFE---EIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~v~-~~~~---~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.+.-... .... ..+.....+.++.|||++|+|+.+.|++|.+.
T Consensus 128 ~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 128 PDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 6532211 1111 11222345779999999999999999999874
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.7e-05 Score=67.66 Aligned_cols=71 Identities=10% Similarity=0.222 Sum_probs=55.3
Q ss_pred cceeeeccCCCCCchhhhhccccc-cEEEEEEecCCc-cchhhHHHHHHHHHhhc--cCCCCCchhhccccccceeeeec
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATA-HAFLLVYSTTCL-ESFQSVKCYFEEIREQR--QDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a-~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~--~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
.+.++|++|+.++......+++.+ +++++|+|+++. .++..+..|...+.... ....+|++ +++
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl------------iv~ 116 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL------------IAC 116 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE------------EEe
Confidence 356999999999988888889998 999999999998 77888777665544321 12346655 999
Q ss_pred ccccccc
Q psy16673 300 STTCLES 306 (373)
Q Consensus 300 nK~Dl~~ 306 (373)
||+|+..
T Consensus 117 NK~Dl~~ 123 (203)
T cd04105 117 NKQDLFT 123 (203)
T ss_pred cchhhcc
Confidence 9999854
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=76.44 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=53.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++.||+||-+|.......++-.|++++|+|....-....-.-|....+ ..+|.+++-||.|...
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~------~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK------YGVPRILFVNKMDRLG 142 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh------cCCCeEEEEECccccc
Confidence 349999999999999999999999999999999877544433333544332 5799999999999876
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.5e-05 Score=71.84 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...++|+++|.||||||||+|++.+.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34689999999999999999999954
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.9e-05 Score=73.91 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=27.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL 46 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~ 46 (373)
.+..+++.+||-||||||||+|+++ .....+++..
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~-----~k~~~~~s~~ 163 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLL-----GKKVAKTSNR 163 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHh-----cccceeeCCC
Confidence 4556899999999999999999999 3344555544
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=67.54 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=41.5
Q ss_pred eeeeccccccchhHhHHhhhhh--cCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIAT--AHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|.+|+.+|.......+.+ -|..++|.+.... .+-+.+. .++. -++|+.++-+|.|+.+
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLg----l~~A-----L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLG----LIAA-----LNIPFFVLVTKMDLVD 317 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHH----HHHH-----hCCCeEEEEEeecccc
Confidence 8899999999997654443333 3667777776543 2333332 1222 3799999999999986
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.3e-05 Score=67.81 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
..+++++|.+|||||||+|.+....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999553
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.9e-05 Score=64.07 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=96.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|+.|+..+.......+++++++++|+|++++.+++.+..|...+..... ...| +++++||+|
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p------------~ivv~nK~D 116 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIP------------IILVGNKID 116 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCc------------EEEEEEccc
Confidence 467899999999999999999999999999999999999999999988887653 2344 459999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+...+....++.+.++...+++|++|||++|.|++++|+.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 117 LEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9866777778888888888999999999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.8e-05 Score=61.89 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=86.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||..|+.+|++++..++++.+++++|.|+.++...+.-+.-...+.....-.++|++ +.|||.|+
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L------------VLGnK~d~ 134 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL------------VLGNKIDL 134 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE------------EecccccC
Confidence 578999999999999999999999999999999999888777755555555555567776 99999998
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.+. .......+..--...-+-.|-+|+|...|++.+.+.+++..+.
T Consensus 135 ~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 135 PGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 553 2222222211112223568999999999999999999986543
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=61.92 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=54.0
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
|.+++|+|+.++.+..+. +... ......+.| +++|.||+|+.....+. .+...+....+.+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p------------~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKK------------LILVLNKADLVPKEVLR-KWLAYLRHSYPTIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhcCCCC------------EEEEEechhcCCHHHHH-HHHHHHHhhCCceEE
Confidence 568899999988766543 2211 111112345 45999999996543321 222233344467789
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
.+||++|.|++++++.+.+.
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred EEeccCCcChhhHHHHHHHH
Confidence 99999999999999998764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.5e-05 Score=63.18 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=89.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
-++.+||.-||...+++++.||..+|+.|.|+|.+++..|++.......+.....-.+. ++++++||.
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~------------~~Lvlank~ 127 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGA------------PLLVLANKQ 127 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCC------------ceEEEEecC
Confidence 34679999999999999999999999999999999999999888865555443222233 455999999
Q ss_pred ccccc---hhhhhh-HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESF---QSVKCY-FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~---r~v~~~-~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+... ..+... .-+.+++...++.+-|||.||+++.+-|++++...
T Consensus 128 dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 128 DLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred cCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHH
Confidence 98632 333322 22455577889999999999999999999998744
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00029 Score=65.40 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=24.2
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 195 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~ 195 (373)
...+|.++.|.|+++|.--+.....+.-+...
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~i 286 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQI 286 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhc
Confidence 45789999999999998777666665555543
|
|
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00031 Score=62.73 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=34.0
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
...+++.+||.+....+..++.|+..-.-. ..-....+|||.|...
T Consensus 78 pl~a~vmvfdlse~s~l~alqdwl~htdin----sfdillcignkvdrvp 123 (418)
T KOG4273|consen 78 PLQAFVMVFDLSEKSGLDALQDWLPHTDIN----SFDILLCIGNKVDRVP 123 (418)
T ss_pred ceeeEEEEEeccchhhhHHHHhhccccccc----cchhheeccccccccc
Confidence 457899999999999999999998643211 1122456799999875
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=63.03 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=50.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhh-------HHHHH---HHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-------FQSVK---CYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s-------~~~l~---~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++|.+||-.-+.=|...+.++++++||.++++-.- -+.+. .+++.+.+.. -..+.+++|..||.||.
T Consensus 197 f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~-~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 197 FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK-WFANTSIILFLNKKDLF 275 (354)
T ss_pred eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc-ccccCcEEEEeecHHHH
Confidence 9999999997777778888999999999988765221 11121 2344444433 23578999999999998
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 276 e 276 (354)
T KOG0082|consen 276 E 276 (354)
T ss_pred H
Confidence 5
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=62.12 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+-.+++-++|.-.+|||+|..++.
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals 28 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALS 28 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHH
Confidence 346899999999999999999997
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.3e-05 Score=63.01 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
....+|+++|.+|||||||+|.++..
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc
Confidence 34678999999999999999999944
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=59.92 Aligned_cols=90 Identities=10% Similarity=0.068 Sum_probs=58.0
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
++..+|.+++|.|+.++....+ ..+.+.+... ..+.|++ +|.||+|+..+... ......+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~--~~~~p~i------------lVlNKiDl~~~~~~-~~~~~~~~~~~ 68 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE--KPHKHLI------------FVLNKCDLVPTWVT-ARWVKILSKEY 68 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhc--cCCCCEE------------EEEEchhcCCHHHH-HHHHHHHhcCC
Confidence 4678899999999998743321 1222233221 2234554 99999999654432 23344444443
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
....+.+||+.|.|++++++.+....
T Consensus 69 ~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEEEEeeccccccHHHHHHHHHHHH
Confidence 33357899999999999999997754
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.9e-05 Score=66.48 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=50.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++.+.+.+....+..... .++| +++|+||+|
T Consensus 74 ~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-----~~~p------------~ilviNKiD 136 (222)
T cd01885 74 LINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK-----ERVK------------PVLVINKID 136 (222)
T ss_pred EEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-----cCCC------------EEEEEECCC
Confidence 46789999999999999999999999999999999887765433332221 2345 449999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 74
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=68.34 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=29.0
Q ss_pred cceeeeeccccccccchhh-hhhHHHHHhhhcCCeEEEeccCC
Q psy16673 292 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKD 333 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v-~~~~~~~~a~~~~~~~~E~SAkt 333 (373)
.++++.++||.|....... -...-+.++...+.+++.+||+.
T Consensus 206 ~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 206 AKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred cCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 4455699999998665431 13344666677778899999974
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0023 Score=59.42 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=51.9
Q ss_pred ceeeeccCCCCCchh-----hh-------hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 225 VDILDTCGDLQFPAM-----RR-------LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 225 ~~~~dtag~~~~~~~-----~~-------~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
.-++||+|....... .. ..-...+..++|.|++.. .+.+... ....+..+.
T Consensus 157 ~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~-~~f~~~~~~-------------- 219 (272)
T TIGR00064 157 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQA-KVFNEAVGL-------------- 219 (272)
T ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHH-HHHHhhCCC--------------
Confidence 347788886654321 11 111236788999999753 3333221 222221111
Q ss_pred ceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHH
Q psy16673 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~el 340 (373)
.-+|.||.|....-...- ..+...++|+.+++ +|++++++
T Consensus 220 --~g~IlTKlDe~~~~G~~l----~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 220 --TGIILTKLDGTAKGGIIL----SIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred --CEEEEEccCCCCCccHHH----HHHHHHCcCEEEEe--CCCChHhC
Confidence 128999999876655433 33334578988888 99998665
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00081 Score=64.97 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=45.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCC---ChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT---CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~---~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|.+|++++-.-....+...|..++|.+.+ .+.+.|.+.- .... .....++|.||+|..+
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~i-----Ldll---gi~~giivltk~D~~d 117 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLI-----LDLL---GIKNGIIVLTKADRVD 117 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHH-----HHhc---CCCceEEEEecccccc
Confidence 889999999998766666677889999999984 4455555422 1121 2233588889999876
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00014 Score=62.03 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=82.4
Q ss_pred cceeeeccCCC----CCchhhhhc---cccccEEEEEEecCCc-cchhhHHHHHHHHHhhccC-CCCCchhhccccccce
Q psy16673 224 DVDILDTCGDL----QFPAMRRLS---IATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHA 294 (373)
Q Consensus 224 ~~~~~dtag~~----~~~~~~~~s---~~~a~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~ 294 (373)
.+.++||+|+. .+..+...+ +..++++++|+|++++ .+++++..|.+++....+. .+.|+
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~----------- 117 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR----------- 117 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-----------
Confidence 35688888863 222333333 3468999999999999 8999999999988776532 24554
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
++|+||+|+.....+.......+....++++++|||++|.|++++|+.++++
T Consensus 118 -ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 118 -IVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -EEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 4999999997766654433333333357899999999999999999999874
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=58.37 Aligned_cols=80 Identities=20% Similarity=0.132 Sum_probs=54.6
Q ss_pred ccccccEEEEEEecCCccc-hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh
Q psy16673 243 SIATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 321 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S-~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~ 321 (373)
....|+.++++.|++++.+ |..-. ....+.| +|=|.+|.|+..+. ...+.++.+-+.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~f---------a~~f~~p------------vIGVITK~Dl~~~~-~~i~~a~~~L~~ 117 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGF---------ASMFNKP------------VIGVITKIDLPSDD-ANIERAKKWLKN 117 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchh---------hcccCCC------------EEEEEECccCccch-hhHHHHHHHHHH
Confidence 4558899999999999765 32111 1112344 44899999998322 133355555555
Q ss_pred cCCe-EEEeccCCCcCHHHHHHHH
Q psy16673 322 QDFQ-LLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 322 ~~~~-~~E~SAktg~nv~elf~~i 344 (373)
-|+. +|++||.+|+||++|.+.|
T Consensus 118 aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 118 AGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cCCCCeEEEECCCCcCHHHHHHHH
Confidence 5654 7999999999999999876
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=64.00 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|......++++++++++|||+++.. +.....+...+.. .++|++ +|+||+|
T Consensus 66 ~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~i------------iv~NK~D 128 (194)
T cd01891 66 KINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPI------------VVINKID 128 (194)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEE------------EEEECCC
Confidence 4569999999999999999999999999999999853 2333333333322 235544 9999999
Q ss_pred cccchhh-hhhHHHHHh-------hhcCCeEEEeccCCCcCHHH
Q psy16673 304 LESFQSV-KCYFEEIRE-------QRQDFQLLECSAKDNYNIKE 339 (373)
Q Consensus 304 l~~~r~v-~~~~~~~~a-------~~~~~~~~E~SAktg~nv~e 339 (373)
+...+.. ..++...+. ...+++++++||++|.|+.+
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 129 RPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 8654321 122222222 23478999999999988743
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0001 Score=70.77 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
++|+|.+|||||||+|+|+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 799999999999999999943
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00025 Score=59.04 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=49.9
Q ss_pred hccccccEEEEEEecCCccchh--hHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh
Q psy16673 242 LSIATAHAFLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319 (373)
Q Consensus 242 ~s~~~a~~~i~v~dvt~~~S~~--~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a 319 (373)
.++..+|.+++|+|+.++.+.. .+..+.... . .+.| +++|.||+|+..+..+. ......
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~--~~k~------------~iivlNK~DL~~~~~~~--~~~~~~ 67 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D--PRKK------------NILLLNKADLLTEEQRK--AWAEYF 67 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c--CCCc------------EEEEEechhcCCHHHHH--HHHHHH
Confidence 4677899999999999987765 333333221 1 2344 45999999996544322 222333
Q ss_pred hhcCCeEEEeccCCCcC
Q psy16673 320 QRQDFQLLECSAKDNYN 336 (373)
Q Consensus 320 ~~~~~~~~E~SAktg~n 336 (373)
+..+.+++++||++|.+
T Consensus 68 ~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEGIVVVFFSALKENA 84 (141)
T ss_pred HhcCCeEEEEEecCCCc
Confidence 44568899999998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00041 Score=64.74 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
..+|+-|||-||||||||+|.++....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a 45 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKA 45 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCC
Confidence 367999999999999999999995533
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=69.64 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+|+++|.+|||||||+|+++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999954
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00015 Score=70.42 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.++++||.+|||||||+|+++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999954
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00028 Score=59.66 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=93.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+||-.||+.-++++..||.-+|++++++|+++++.|+.-+...+.+.....-.++|++ +.+||
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L------------~lank 135 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVL------------VLANK 135 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchh------------hhcch
Confidence 345668999999999999999999999999999999999999999988888887777788988 99999
Q ss_pred cccccchhhh---hhHHH-HHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQSVK---CYFEE-IREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~v~---~~~~~-~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.|+.+...+. ...+. .+--...++|..|||.+|+||++-.+++++..
T Consensus 136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 9986654332 22221 11123348899999999999999999999843
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00011 Score=62.36 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-.++++|.+|||||||+|.++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999954
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0063 Score=57.84 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=27.1
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~el 340 (373)
+|.||.|....-... -..+...++|+.+++ +|++++.+
T Consensus 264 iIlTKlD~t~~~G~~----l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAKGGVV----FAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCCccHH----HHHHHHHCCCEEEEe--CCCChhhC
Confidence 899999965443332 333455589999998 89998665
|
|
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0003 Score=57.32 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=82.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||..|+.+.+.+++.||.++.++|||.|..++...++.+.-...+...+.....| +++.+||.|+
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~------------~LvlANkQDl 130 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI------------ILILANKQDL 130 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce------------EEEEecCccc
Confidence 4578889999999999999999999999999999977777666333333333333344 4499999999
Q ss_pred ccchhhhhh---HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVKCY---FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~~~---~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+.+.+- ....-++-...-...|||.+|.++.|-|.++....
T Consensus 131 p~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 131 PDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 777654422 22222333345578999999999999999998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 373 | ||||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 1e-13 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 4e-12 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 7e-11 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 2e-08 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 2e-08 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 2e-08 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 2e-08 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 8e-05 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 4e-08 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 4e-04 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 5e-08 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 1e-04 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 5e-08 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 8e-04 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 6e-08 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 1e-07 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 1e-07 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 1e-07 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 1e-05 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 1e-07 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 1e-05 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 3e-07 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 6e-04 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 3e-07 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 7e-04 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 3e-07 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 3e-07 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 3e-07 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 3e-07 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 7e-04 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 3e-07 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 3e-07 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 3e-07 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 7e-04 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 3e-07 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 5e-05 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 3e-07 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 3e-07 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 3e-07 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 9e-04 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 3e-07 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 3e-07 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 8e-04 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 3e-07 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 8e-04 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 3e-07 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 3e-07 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 3e-07 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 3e-07 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 3e-07 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 5e-05 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 3e-07 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 8e-04 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 3e-07 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 7e-04 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 3e-07 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 3e-07 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 4e-07 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 4e-07 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 4e-07 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 4e-07 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 6e-04 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 4e-07 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 4e-07 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 4e-07 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 4e-07 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 9e-06 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 4e-07 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 1e-05 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 4e-07 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 4e-07 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 4e-07 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 6e-07 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 6e-07 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 9e-04 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 6e-07 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 7e-07 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 8e-07 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 8e-07 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 8e-07 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 1e-06 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 1e-06 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 1e-06 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 1e-06 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 6e-06 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 5e-04 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 7e-06 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 6e-04 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 7e-06 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 7e-04 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 7e-06 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 6e-04 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 2e-05 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 3e-05 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 7e-04 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 3e-05 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 7e-04 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 5e-05 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 6e-05 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 6e-05 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 7e-05 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 1e-04 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 8e-04 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 1e-04 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 1e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 1e-04 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 1e-04 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 1e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 1e-04 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 1e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 1e-04 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 1e-04 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 1e-04 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 1e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 1e-04 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 1e-04 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 6e-04 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 1e-04 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 2e-04 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 2e-04 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 2e-04 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 3e-04 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 3e-04 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 3e-04 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 4e-04 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 4e-04 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 4e-04 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 5e-04 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 6e-04 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 8e-04 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 9e-04 |
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 4e-23
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI+
Sbjct: 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 113
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D + R V +
Sbjct: 114 LVGNKCDES-PSREVQSSE 131
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 3e-18
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + +
Sbjct: 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI- 112
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNYNIKEVFRT 343
+LV + + V+ E + ++ +E SAK N+N+KE+F+
Sbjct: 113 ----------MLVGNKCDESPSREVQ--SSEAEALARTWKCAFMETSAKLNHNVKELFQE 160
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-14
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
R+ + G GVGKS ++ RF+ T+ + Y TVED Y + + I G+
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICT-LQITDTTGSHQ 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
M H LE++ + + + IPI++ G
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPI-------YEQICEIKGDVESIPIMLVG 116
Query: 115 NKSDMTSHHRAVHLED 130
NK D + R V +
Sbjct: 117 NKCDES-PSREVQSSE 131
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 1e-22
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + ++IP++
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D R V +
Sbjct: 119 LVGNKCDE--TQREVDTRE 135
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-18
Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPAM 284
I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + + P M
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R + A A Q KC F +E SAK N
Sbjct: 119 LVGNKCDETQREVDTREAQAV-----------AQEWKCAF------------METSAKMN 155
Query: 335 YNIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVNKGK 372
YN+KE+F+ LT N N +RS +
Sbjct: 156 YNVKELFQELLT--LETRRNMSLNIDGKRSGKQKRTDR 191
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
R+V+ G GVGKS ++ RF+ T+ D Y T+ED Y + + I G+
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCT-LQITDTTGSHQ 68
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
M H LE++ + ++Q ++IP+++ G
Sbjct: 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPI-------YKLIVQIKGSVEDIPVMLVG 121
Query: 115 NKSDMTSHHRAVHLED 130
NK D R V +
Sbjct: 122 NKCDE--TQREVDTRE 135
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 8e-21
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+ILDT G QF +MR L I F+LVYS +SFQ +K ++I ++ +++P++
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVI 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V +
Sbjct: 113 LVGNKVDLE-SEREVSSSE 130
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 6e-18
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+ILDT G QF +MR L I F+LVYS +SFQ +K ++I ++ + P
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP--- 110
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNYNIKEVFRT 343
+LV + LES + V E R +++ +E SAK + E+F
Sbjct: 111 ---------VILVGNKVDLESEREVS--SSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 7e-14
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
++V+LG GVGKS + +F+ T+ ++Y T+ED Y ++ V + + I+ AG +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSV-LEILDTAGTEQ 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ M + + +D+ R I +++P+++ G
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM--------RDQIIRVKRYEKVPVILVG 115
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V +
Sbjct: 116 NKVDLE-SEREVSSSE 130
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-20
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++DT G ++ + + ++LVYS T ++SF+ +K ++ + +IPI+
Sbjct: 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV-GKVQIPIM 115
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R + E+
Sbjct: 116 LVGNKKDLH-MERVISYEE 133
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 5e-18
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
++DT G ++ + + ++LVYS T ++SF+ +K ++ + Q P M
Sbjct: 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R +S A +S F LE SAK+N
Sbjct: 117 VGNKKDLHMERVISYEEGKAL-----------AESWNAAF------------LESSAKEN 153
Query: 335 YNIKEVFRT 343
+VFR
Sbjct: 154 QTAVDVFRR 162
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-13
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 27/143 (18%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M ++ ++ ILG + VGKS + +F+ + D Y T+E+ +++ V + +V
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYH-LQLV 59
Query: 65 -VAGNK--SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDE 107
AG S + ++ E + + +
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI--------HGKLLDMVGKVQ 111
Query: 108 IPIVVAGNKSDMTSHHRAVHLED 130
IPI++ GNK D+ R + E+
Sbjct: 112 IPIMLVGNKKDLH-MERVISYEE 133
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 3e-20
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+ILDT G QF AMR L + F LVYS T +F ++ E+I + D +++P++
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTEDVPMI 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V E
Sbjct: 113 LVGNKCDLE-DERVVGKEQ 130
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-17
Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 33/129 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
+ILDT G QF AMR L + F LVYS T +F ++ E+I + P +
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R + + Q C F LE SAK
Sbjct: 114 VGNKCDLEDERVVGKEQGQNL----------ARQWCNCAF------------LESSAKSK 151
Query: 335 YNIKEVFRT 343
N+ E+F
Sbjct: 152 INVNEIFYD 160
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 6e-13
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V + I+ AG +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCM-LEILDTAGTEQ 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ M + + D+ + R I +++P+++ G
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL--------REQILRVKDTEDVPMILVG 115
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V E
Sbjct: 116 NKCDLE-DERVVGKEQ 130
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 7e-20
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++DT G ++ + I H ++LVYS T L SFQ ++ ++++ E +P+V
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-GKTRVPVV 133
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ S R V +
Sbjct: 134 LVGNKADL-SPEREVQAVE 151
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 5e-17
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 36/148 (24%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
++DT G ++ + I H ++LVYS T L SFQ ++ ++++ E + P +
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R + +S F +E SA++N
Sbjct: 135 VGNKADLSPEREVQAVEGKKL-----------AESWGATF------------MESSAREN 171
Query: 335 YNIKEVFRTFLTLSQILTTNGDENSLKR 362
+ +F + +I +R
Sbjct: 172 QLTQGIFTKVIQ--EIARVENSYGQERR 197
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-12
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 27/143 (18%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M ++VILG + VGK+ + +F+ +S+ Y TVE+ YS+ +G + +V
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFH-LHLV 77
Query: 65 -VAGNK--SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDE 107
AG S + VH + + +
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESL--------YQKLHEGHGKTR 129
Query: 108 IPIVVAGNKSDMTSHHRAVHLED 130
+P+V+ GNK+D+ S R V +
Sbjct: 130 VPVVLVGNKADL-SPEREVQAVE 151
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 1e-19
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G +F AMR + H FLLV++ +SF V F +I + + P+V
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVV 118
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ R V +
Sbjct: 119 LVGNKADLE-SQRQVPRSE 136
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 3e-17
Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G +F AMR + H FLLV++ +SF V F +I + FP +
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++ + A AF S + E SAK
Sbjct: 120 VGNKADLESQRQVPRSEASAF-----------GASHHVAY------------FEASAKLR 156
Query: 335 YNIKEVFRT 343
N+ E F
Sbjct: 157 LNVDEAFEQ 165
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++GG GVGKS + +F+ + + Y T+ED Y++ V + + + I+ AG +
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPAR-LDILDTAGQEE 69
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
M + RA H +V + I D+ P+V+ G
Sbjct: 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKL--------FTQILRVKDRDDFPVVLVG 121
Query: 115 NKSDMTSHHRAVHLED 130
NK+D+ R V +
Sbjct: 122 NKADLE-SQRQVPRSE 136
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-19
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + + P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPM 126
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ NK D+ H R V +
Sbjct: 127 ILVANKVDLM-HLRKVTRDQ 145
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-15
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 35/131 (26%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + FP +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R+++ + +E SAKD
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEM-----------ATKYNIPY------------IETSAKD 164
Query: 334 N-YNIKEVFRT 343
N+ + F
Sbjct: 165 PPLNVDKTFHD 175
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-13
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + +F + D Y T+ED Y + + + ++ AG +
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEE 78
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R E V + +I + P+++
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF--------HQLILRVKDRESFPMILVA 130
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ H R V +
Sbjct: 131 NKVDLM-HLRKVTRDQ 145
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-19
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + D + +A A+++VYS T SF+ ++R RQ ++PI
Sbjct: 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPI 109
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V +++
Sbjct: 110 ILVGNKSDLV-RSREVSVDE 128
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 2e-16
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 34/130 (26%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ + D + +A A+++VYS T SF+ ++R RQ P +
Sbjct: 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 110
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S+ A C F +E SA
Sbjct: 111 LVGNKSDLVRSREVSVDEGRAC-----------AVVFDCKF------------IETSAAL 147
Query: 334 NYNIKEVFRT 343
++N++ +F
Sbjct: 148 HHNVQALFEG 157
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 8e-12
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
++++LG GVGKS + + F Y R V + + +
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEAS-LMVYDIWEQDG 61
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ H E SE +LR Q+ D++PI++ G
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL----RVQLRRARQT----DDVPIILVG 113
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +++
Sbjct: 114 NKSDLV-RSREVSVDE 128
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 2e-19
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P +
Sbjct: 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFL 113
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V +E+
Sbjct: 114 LVGNKSDLE-DKRQVSVEE 131
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 9e-17
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 34/129 (26%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G + A+R + FL V+S T +ESF + + E+I ++D P +
Sbjct: 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S+ A + +E SAK
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNR-----------ADQWNVNY------------VETSAKTR 151
Query: 335 YNIKEVFRT 343
N+ +VF
Sbjct: 152 ANVDKVFFD 160
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 1e-12
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+++++G GVGKS + +F+++ + + Y T D Y + + ++ I I+ AG +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ-IDILDTAGQED 64
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + ++ R+ +++ R I + +P ++ G
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADF--------REQILRVKEDENVPFLLVG 116
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +E+
Sbjct: 117 NKSDLE-DKRQVSVEE 131
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE-IP 203
+ ++DT R + AHAFL+VYS +SF S Y E + ++ Q IP
Sbjct: 71 LRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129
Query: 204 IVVAGNKSDMTSHHRAVHLED 224
++ GNK DM +R V +
Sbjct: 130 ALLLGNKLDMA-QYRQVTKAE 149
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-13
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAG-- 67
+ L ILG +G GKS + +FL + Y +ED YS + V + + ++ A
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVH-LRVMDTADLD 80
Query: 68 NKSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + H + S +L EL L + IP ++ G
Sbjct: 81 TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYL--ELLALH----AKETQRSIPALLLG 134
Query: 115 NKSDMTSHHRAVHLED 130
NK DM +R V +
Sbjct: 135 NKLDMA-QYRQVTKAE 149
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-13
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 38/133 (28%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ--FP 282
+ ++DT R + AHAFL+VYS +SF S Y E + ++ Q P
Sbjct: 71 LRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129
Query: 283 AM-----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331
A+ R+++ A A C F E SA
Sbjct: 130 ALLLGNKLDMAQYRQVTKAEGVAL-----------AGRFGCLF------------FEVSA 166
Query: 332 KDNY-NIKEVFRT 343
++ +++ VF
Sbjct: 167 CLDFEHVQHVFHE 179
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 3e-19
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P +
Sbjct: 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFL 127
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V +E+
Sbjct: 128 LVGNKSDLE-DKRQVSVEE 145
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 9e-17
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 36/144 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G + A+R + FL V+S T +ESF + + E+I ++D P +
Sbjct: 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S+ A + + +E SAK
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNR-----------AEQWNVNY------------VETSAKTR 165
Query: 335 YNIKEVFRTFLTLSQILTTNGDEN 358
N+ +VF + +I +++
Sbjct: 166 ANVDKVFFDLMR--EIRARKMEDS 187
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+++++G GVGKS + +F+++ + + Y T D Y + + ++ I I+ AG +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ-IDILDTAGQED 78
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + ++ R+ +++ R I + +P ++ G
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADF--------REQILRVKEDENVPFLLVG 130
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +E+
Sbjct: 131 NKSDLE-DKRQVSVEE 145
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 4e-19
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+V
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMV 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V
Sbjct: 113 LVGNKSDLA--ARTVESRQ 129
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-16
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 33/128 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
Query: 285 ---------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
R + A +S + +E SAK
Sbjct: 114 VGNKSDLAARTVESRQAQDL-----------ARSYGIPY------------IETSAKTRQ 150
Query: 336 NIKEVFRT 343
+++ F T
Sbjct: 151 GVEDAFYT 158
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-12
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + + + N + D T+ED Y + + T + I+ AG +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R ED+ ++ R I+ D++P+V+ G
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY--------REQIKRVKDSDDVPMVLVG 115
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V
Sbjct: 116 NKSDLA--ARTVESRQ 129
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 7e-19
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D +++P+V
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK-DSEDVPMV 113
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V +
Sbjct: 114 LVGNKCDL--PSRTVDTKQ 130
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 33/128 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 114
Query: 285 ---------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
R + A +S F +E SAK
Sbjct: 115 VGNKCDLPSRTVDTKQAQDL-----------ARSYGIPF------------IETSAKTRQ 151
Query: 336 NIKEVFRT 343
+ + F T
Sbjct: 152 GVDDAFYT 159
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + + + N + D Y T+ED Y + + T + I+ AG +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 64
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R ED+ + R I+ +++P+V+ G
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY--------REQIKRVKDSEDVPMVLVG 116
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V +
Sbjct: 117 NKCDL--PSRTVDTKQ 130
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 7e-19
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P +
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFL 123
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V +E+
Sbjct: 124 LVGNKSDLE-DKRQVSVEE 141
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-16
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 37/161 (22%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G + A+R + FL V+S T +ESF + + E+I ++D P +
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S+ A + + +E SAK
Sbjct: 125 VGNKSDLEDKRQVSVEEAKNR-----------AEQWNVNY------------VETSAKTR 161
Query: 335 YNIKEVFRTFLTL---SQILTTNGDENSLKRRSSAYVNKGK 372
N+ +VF + ++ + KR+S A + +
Sbjct: 162 ANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRER 202
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-12
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+++++G GVGKS + +F+++ + + Y T D Y + + ++ I I+ AG +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ-IDILDTAGQED 74
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + ++ R+ +++ R I + +P ++ G
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADF--------REQILRVKEDENVPFLLVG 126
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +E+
Sbjct: 127 NKSDLE-DKRQVSVEE 141
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-18
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF + Y E+I+ + D ++P+V
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMV 130
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V +
Sbjct: 131 LVGNKCDL--PTRTVDTKQ 147
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-16
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 33/128 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G ++ AMR + T FL V++ +SF + Y E+I+ + P +
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131
Query: 285 ---------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
R + AH +S F +E SAK
Sbjct: 132 VGNKCDLPTRTVDTKQAHEL-----------AKSYGIPF------------IETSAKTRQ 168
Query: 336 NIKEVFRT 343
+++ F T
Sbjct: 169 GVEDAFYT 176
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + + + N + D Y T+ED Y + + T + I+ AG +
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 81
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R D++ + R I+ D++P+V+ G
Sbjct: 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLY--------REQIKRVKDSDDVPMVLVG 133
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V +
Sbjct: 134 NKCDL--PTRTVDTKQ 147
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 2e-18
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ D ++ + T AFL+V+S T SF V +R R ++P+
Sbjct: 54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPV 112
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V LE+
Sbjct: 113 ILVGNKSDLA-RSREVSLEE 131
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-15
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 35/130 (26%)
Query: 226 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ D ++ + T AFL+V+S T SF V +R R P +
Sbjct: 54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S+ ++ C +E SA
Sbjct: 114 LVGNKSDLARSREVSLEEGRHL-----------AGTLSCKH------------IETSAAL 150
Query: 334 NYNIKEVFRT 343
++N +E+F
Sbjct: 151 HHNTRELFEG 160
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-12
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 29/138 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EIPIVVAGN- 68
+++++G GVGKS + F + ED Y R V + + +
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIV-YDIWEQG 62
Query: 69 --KSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ H + V E +++ ++P+++
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET--------LLRLRAGRPHHDLPVIL 114
Query: 113 AGNKSDMTSHHRAVHLED 130
GNKSD+ R V LE+
Sbjct: 115 VGNKSDLA-RSREVSLEE 131
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-18
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+ILDT G + R + F+LVY T SF+ V + E ++ + + ++
Sbjct: 79 EILDTAGQ-EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLI 136
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ H R V E+
Sbjct: 137 LVGNKADLD-HSRQVSTEE 154
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 36/130 (27%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
+ILDT G + R + F+LVY T SF+ V + E ++ +
Sbjct: 79 EILDTAGQ-EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S + C F ECSA
Sbjct: 138 VGNKADLDHSRQVSTEEGEKL-----------ATELACAF------------YECSACTG 174
Query: 335 Y-NIKEVFRT 343
NI E+F
Sbjct: 175 EGNITEIFYE 184
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-13
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 26/142 (18%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M + ++L I G GVGKS ++ RFL + Y T+E Y + + + I+
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS-MEIL 81
Query: 65 -VAGN-KSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEI 108
AG + H R E+V + ++ +
Sbjct: 82 DTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL--------KNILDEIKKPKNV 133
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
+++ GNK+D+ H R V E+
Sbjct: 134 TLILVGNKADLD-HSRQVSTEE 154
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 6e-18
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 145 VDILDTCGDLQFP--AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEI 202
+ ++DT + + + A+++VYS SF+S ++R Q +
Sbjct: 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA-DHV 112
Query: 203 PIVVAGNKSDMTSHHRAVHLED 224
PI++ GNK+D+ R V +E+
Sbjct: 113 PIILVGNKADLA-RCREVSVEE 133
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-15
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 225 VDILDTCGDLQFP--AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+ ++DT + + + A+++VYS SF+S ++R Q P
Sbjct: 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113
Query: 283 AM-----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331
+ R +S+ A C F +E SA
Sbjct: 114 IILVGNKADLARCREVSVEEGRAC-----------AVVFDCKF------------IETSA 150
Query: 332 KDNYNIKEVFRT 343
+N+ E+F
Sbjct: 151 TLQHNVAELFEG 162
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-12
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNKS 70
R+V+LG GVGK+ + F D + ED+Y R V + +V +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTT-LVVVDTWEAEK 64
Query: 71 DMTSHHRAVH------------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
S + E SE +LR Q+ D +PI++
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL----RIQLRRTHQA----DHVPIIL 116
Query: 113 AGNKSDMTSHHRAVHLED 130
GNK+D+ R V +E+
Sbjct: 117 VGNKADLA-RCREVSVEE 133
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 20/155 (12%)
Query: 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277
+ + +D+ + G+ ++ + + A+L+VYS T SF+ ++R RQ
Sbjct: 54 ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 111
Query: 278 DFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNY 335
P + LV + + L + V E R F +E SA +
Sbjct: 112 TEDIPII------------LVGNKSDLVRXREVS--VSEGRAXAVVFDXKFIETSAAVQH 157
Query: 336 NIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVNK 370
N+KE+F + Q+ + +RR + K
Sbjct: 158 NVKELFEGIVR--QVRLRRDSKEKNERRLAYQKRK 190
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 7e-17
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 137 CELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 196
+ L D+ + G+ ++ + + A+L+VYS T SF+ ++R R
Sbjct: 56 ATIILL---DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110
Query: 197 QDFQEIPIVVAGNKSDMTSHHRAVHLED 224
Q ++IPI++ GNKSD+ R V + +
Sbjct: 111 QT-EDIPIILVGNKSDLV-RXREVSVSE 136
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 28/138 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRS--TVEDLYSRDFHVGAVTIKEIPIVV---A 66
R+V++G QGVGKS + F S ED Y R V + I + +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 67 GNKSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
G + H + E SE +LR Q+ ++IPI++
Sbjct: 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASEL----RIQLRRARQT----EDIPIIL 119
Query: 113 AGNKSDMTSHHRAVHLED 130
GNKSD+ R V + +
Sbjct: 120 VGNKSDLV-RXREVSVSE 136
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-17
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ D +R + T AFL+V+S T SF V +R R ++P+
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPV 133
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V LE+
Sbjct: 134 ILVGNKSDLA-RSREVSLEE 152
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-14
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 35/130 (26%)
Query: 226 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ D +R + T AFL+V+S T SF V +R R P +
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 134
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S+ ++ C +E SA
Sbjct: 135 LVGNKSDLARSREVSLEEGRHL-----------AGTLSCKH------------IETSAAL 171
Query: 334 NYNIKEVFRT 343
++N +E+F
Sbjct: 172 HHNTRELFEG 181
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-12
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 29/138 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIV-VAGN- 68
+++++G GVGKS + F + ED Y R V + + + +
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT-LVVYDIWEQG 83
Query: 69 --KSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ H + V E +++ ++P+++
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET--------LLRLRAGRPHHDLPVIL 135
Query: 113 AGNKSDMTSHHRAVHLED 130
GNKSD+ R V LE+
Sbjct: 136 VGNKSDLA-RSREVSLEE 152
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 137 CELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 196
+ L D+ + G+ ++ + + A+L+VYS T SF+ ++R R
Sbjct: 87 ATIILL---DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141
Query: 197 QDFQEIPIVVAGNKSDMTSHHRAVHLED 224
Q ++IPI++ GNKSD+ R V + +
Sbjct: 142 QT-EDIPIILVGNKSDLV-RCREVSVSE 167
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 6e-15
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 36/137 (26%)
Query: 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277
+ + +D+ + G+ ++ + + A+L+VYS T SF+ ++R RQ
Sbjct: 85 ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 142
Query: 278 DFQFPAM-----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326
P + R +S++ A C F
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRAC-----------AVVFDCKF------------ 179
Query: 327 LECSAKDNYNIKEVFRT 343
+E SA +N+KE+F
Sbjct: 180 IETSAAVQHNVKELFEG 196
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-11
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYS--DRYRSTVEDLYSRDFHVGAVTIKEIPIVV---- 65
R+V++G QGVGKS + F S ED Y R V + I++
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG---ESATIILLDMW 95
Query: 66 --AGNKSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
G + H + E SE +LR Q+ ++IP
Sbjct: 96 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASEL----RIQLRRARQT----EDIP 147
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
I++ GNKSD+ R V + +
Sbjct: 148 IILVGNKSDLV-RCREVSVSE 167
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-16
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I D G + A + V+S SFQ+V YF + R + E+P+V
Sbjct: 70 LIRDEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMV 123
Query: 206 VAGNKSDMTS-HHRAVHLED 224
+ G + +++ + R +
Sbjct: 124 LVGTQDAISAANPRVIDDSR 143
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-13
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 20/121 (16%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
I D G + A + V+S SFQ+V YF + R + P
Sbjct: 70 LIRDEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP--- 121
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFR 342
+LV + + + R+ D E A N++ VF+
Sbjct: 122 ---------MVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
Query: 343 T 343
Sbjct: 173 D 173
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-10
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 35/143 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK-EI-------- 61
+++ I+G GKS ++ R+L TY S + ++ V + I
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 62 ---------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ V + + V + + S E+P+V+
Sbjct: 80 LQFAAWVDAVVFV----FSLEDEIS---FQTVYNY--------FLRLCSFRNASEVPMVL 124
Query: 113 AGNKSDMTS-HHRAVHLEDVSEW 134
G + +++ + R + +
Sbjct: 125 VGTQDAISAANPRVIDDSRARKL 147
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-15
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE---I 202
I + G A A + V+S SFQ+V ++ R + + +
Sbjct: 57 LIREEAGAPDAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111
Query: 203 PIVVAGNKSDMTSHHRAVHLED 224
+V ++ + R V
Sbjct: 112 ALVGTQDRISAS-SPRVVGDAR 132
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-11
Identities = 19/125 (15%), Positives = 30/125 (24%), Gaps = 26/125 (20%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ----DFQF 281
I + G A A + V+S SFQ+V ++ R
Sbjct: 57 LIREEAGAPDAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111
Query: 282 PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE---QRQDFQLLECSAKDNYNIK 338
+ S + V R + E A N+
Sbjct: 112 A------------LVGTQDRISASSPRVVG--DARARALXADMKRCSYYETXATYGLNVD 157
Query: 339 EVFRT 343
VF+
Sbjct: 158 RVFQE 162
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 31/142 (21%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK----------- 59
+RL +LG GKS ++ RFL +Y T + Y ++ V T
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 60 -------EIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ I V + + + VS + +L LR G + +V
Sbjct: 67 AKFSGWADAVIFV----FSLEDENS---FQAVSRL-HGQLSSLR---GEGRGGLALALVG 115
Query: 113 AGNKSDMTSHHRAVHLEDVSEW 134
++ + R V
Sbjct: 116 TQDRISAS-SPRVVGDARARAL 136
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 9e-15
Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 55/221 (24%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPI 63
M + V+LG VGKS I+ R +T+ + +T+ + ++ + IK
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 64 VVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
N + + V + + L +++ I
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDI------------------------ 97
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ 183
W DT G ++ ++ L A ++V+ + +
Sbjct: 98 ----------W--------------DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD 133
Query: 184 SVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
K + +++ I++ NK D V + +
Sbjct: 134 RAKTWVNQLKIS----SNYIIILVANKIDKN--KFQVDILE 168
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 29/84 (34%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR----------------EQRQ------------- 322
A ++V+ + + K + +++ + Q
Sbjct: 117 ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDN 176
Query: 323 DFQLLECSAKDNYNIKEVFRTFLT 346
+ ++ SAK NIK +F
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAE 200
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 54/165 (32%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRST--VEDLYSRDFHVGAVTIK-EI-------- 61
+ ++G GVGK+ + R L + Y +T + IK +
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWL-----YCELPKLRYVIQSS 102
I+ D+TS + ++++ W+
Sbjct: 74 KAVLKDVYYIGASGAILF----FDVTSR---ITCQNLARWVKEFQAVV------------ 114
Query: 103 SFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDI 147
G+E PIVV NK D+ + + + + V E + Y +I
Sbjct: 115 --GNEAPIVVCANKIDIK-NRQKISKKLVME--VLKGKNYEYFEI 154
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVD 226
A +L + T + Q++ + +E + + E PIVV NK D+ + + + + V
Sbjct: 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIK-NRQKISKKLVM 141
Query: 227 ILDTCGDLQF 236
+ + ++
Sbjct: 142 EVLKGKNYEY 151
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A +L + T + Q++ + +E + A ++V + ++
Sbjct: 85 ASGAILFFDVTSRITCQNLARWVKEFQAV--------------VGNEAPIVVCANKIDIK 130
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLK 361
+ Q + + + E + ++++ E SAK +N FL L++I T D +
Sbjct: 131 NRQKIS--KKLVMEVLKGKNYEYFEISAKTAHNFGLP---FLHLARIFTGRPDLIFVS 183
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-11
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDFQEIPI 204
+ DT G +F ++ A +LVY T SF+++K + +E + P
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL-DTCGDLQF 236
V+ GNK D + V + L + GD+
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-11
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV------VA 66
++ILG GVGK+ ++ R++ + YS +Y++T+ DF VT+ + A
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATI----GADFLTKEVTVDGDKVATMQVWDTA 66
Query: 67 GN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPI 110
G +S + +R E++ W E L + + + + P
Sbjct: 67 GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRD-EF--LVHA--NVNSPETFPF 121
Query: 111 VVAGNKSDMTSHHRAVHLEDVSEW 134
V+ GNK D + V + E
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQEL 145
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 37/132 (28%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQFPA 283
+ DT G +F ++ A +LVY T SF+++K + +E FP
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 284 M------------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331
+ + +S +A + D L SA
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQEL-------A---------------KSLGDIPLFLTSA 159
Query: 332 KDNYNIKEVFRT 343
K+ N+ F
Sbjct: 160 KNAINVDTAFEE 171
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 8e-11
Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 28/207 (13%)
Query: 17 GGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHH 76
G G+GKSC+ RF+ + + + L + DF V N +
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG----------GRVVNNDHFLYWGE 84
Query: 77 RAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 136
+ LED E + + + I +F + + + + ++
Sbjct: 85 VSRSLEDCVECKMHIVEQTEF-IDDQTFQPHRS-------TALQPYIKRAAATKLASA-- 134
Query: 137 CELPKLRYVDILDTCGDLQFPAMRRLSIA-TAHAFLLVYSTT--CLESFQSVKCYFEEIR 193
KL Y + F + FLL + +F + +
Sbjct: 135 ---EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLY 191
Query: 194 EQRQDFQEIPIVVAGNKSDMTSHHRAV 220
Q + PIVV K D R +
Sbjct: 192 NQLAK-TKKPIVVVLTKCDEG-VERYI 216
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 3e-05
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 21/101 (20%)
Query: 248 HAFLLVYSTT--CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-L 304
FLL + +F + + Q + P ++V T C
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP------------IVVV-LTKCDE 210
Query: 305 ESFQSVKCYFEEIREQ--RQDFQLLECSAKDNYNIKEVFRT 343
+ ++ + +++ Q++E SA+ N N+ F T
Sbjct: 211 GVERYIR---DAHTFALSKKNLQVVETSARSNVNVDLAFST 248
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-11
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 41/133 (30%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI--------- 61
LV++G G GK+ +KR L + +Y +T+ +++ FH IK +
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I++ D+TS V ++V W +L +R + I
Sbjct: 78 GGLRDGYYIQAQCAIIM----FDVTSR---VTYKNVPNWHR-DL--VRV-------CENI 120
Query: 109 PIVVAGNKSDMTS 121
PIV+ GNK D+
Sbjct: 121 PIVLCGNKVDIKD 133
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G +F +R A ++++ T ++++V + ++ ++ IPIV+
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVL 124
Query: 207 AGNKSDMTS 215
GNK D+
Sbjct: 125 CGNKVDIKD 133
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 36/140 (25%)
Query: 216 HHRAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 271
H H ++ DT G +F +R A ++++ T ++++V + +
Sbjct: 53 HPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 112
Query: 272 IREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--------QRQD 323
+ ++ +L + K ++ + ++++
Sbjct: 113 LVRVCENIPI--------------VLCGN----------KVDIKDRKVKAKSIVFHRKKN 148
Query: 324 FQLLECSAKDNYNIKEVFRT 343
Q + SAK NYN ++ F
Sbjct: 149 LQYYDISAKSNYNFEKPFLW 168
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 3e-10
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A A +LV+STT ESF+++ + E++ + D IP + NK D+ + E+
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLL-DDSCIKNEE 131
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-09
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A A +LV+STT ESF+++ + E++ + D LV + L
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIP--------------TALVQNKIDLLD 123
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+K EE +R + S K++ N+ EVF+
Sbjct: 124 DSCIK--NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 6e-09
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 42/146 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+V++G VGKS +++R+ ++ Y+ T+ D R V ++ +
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
++V T E +S W ++ +I
Sbjct: 68 DAITKAYYRGAQACVLV----FSTTDRES---FEAISSWRE-KVVAEV---------GDI 110
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEW 134
P + NK D+ + E+
Sbjct: 111 PTALVQNKIDLL-DDSCIKNEEAEGL 135
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 4e-10
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 41/145 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV+LG G GKS ++ RF+ + + + ST+ +S+ V T+K EI
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I+V D+T+ E +W+ EL +
Sbjct: 75 HSLAPMYYRGAAAAIIV----FDVTNQAS---FERAKKWVQ-ELQAQG--------NPNM 118
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSE 133
+ +AGNKSD+ R V ED
Sbjct: 119 VMALAGNKSDL-LDARKVTAEDAQT 142
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-09
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A A ++V+ T SF+ K + +E++ Q + + +AGNKSD+ R V ED
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDL-LDARKVTAED 139
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A A ++V+ T SF+ K + +E++ Q ++ A L + + L
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNP---------NMVMA----LAGNKSDLLD 131
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E+ + Q +E SAK N+KE+F
Sbjct: 132 ARKVT--AEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-10
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLED 224
+ +LV+ + +ESF+S K +FE ++ R D + + V+ NK+D+ V L+
Sbjct: 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM 155
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 29/147 (19%)
Query: 10 RIRLVILGGQGVGKSCILKRF--LFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-PIV 64
R ++ ++G VGKS ++ F + + Y T ++ + T+ E+ +
Sbjct: 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLD 79
Query: 65 VAGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDE- 107
AG+ K ++ + V+ E W + + +
Sbjct: 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAW-------FELLKSARPDRERP 132
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+ V+ NK+D+ V L+ +W
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDW 159
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAH-AFLLVYSTTCLE 305
+ +LV+ + +ESF+S K +FE ++ R D +LV + T L
Sbjct: 97 VYYAILVFDVSSMESFESCKAWFELLKSARPD-----------RERPLRAVLVANKTDLP 145
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAK-DNYNIKEVFRTFLT 346
+ + ++ + SA + F + T
Sbjct: 146 PQRHQ-VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 6e-10
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ ++
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
+VV D+T+ + S+W+ ++ R G ++
Sbjct: 77 RSLIPSYIRDSTVAVVV----YDITNTNS---FHQTSKWID-DVRTER--------GSDV 120
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
I++ GNK+D+ S R V E+
Sbjct: 121 IIMLVGNKTDL-SDKRQVSTEE 141
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ ++VY T SF + +++R +R ++ I++ GNK+D+ S R V E+
Sbjct: 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDL-SDKRQVSTEE 141
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ ++VY T SF + +++R +R + LV + T L
Sbjct: 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGS---------DVIIM----LVGNKTDLSD 133
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+ V EE + + +E SAK YN+K++FR
Sbjct: 134 KRQVS--TEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-10
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
+ DT G +F R S+ HA + VY T + SF S+ + EE ++ +
Sbjct: 73 LWDTAGQERF----RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-ND 127
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
IP ++ GNK D+ V +
Sbjct: 128 IPRILVGNKCDL-RSAIQVPTDL 149
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 35/142 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+++++G VGK+C+ RF + DR +T+ DF AV I I +
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI----GVDFRERAVDIDGERIKIQLWDT 76
Query: 66 AG----NKSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEI 108
AG KS + ++R VH + W+ E + ++I
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIE-E-------CKQHLLANDI 128
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
P ++ GNK D+ V +
Sbjct: 129 PRILVGNKCDL-RSAIQVPTDL 149
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 28/127 (22%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
+ DT G +F R S+ HA + VY T + SF S+ + EE ++
Sbjct: 73 LWDTAGQERF----RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 128
Query: 282 PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAK---DNYN 336
P + LV + L S V + ++ L E SAK DN +
Sbjct: 129 PRI------------LVGNKCDLRSAIQVP--TDLAQKFADTHSMPLFETSAKNPNDNDH 174
Query: 337 IKEVFRT 343
++ +F T
Sbjct: 175 VEAIFMT 181
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-10
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 41/145 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV+LG VGKS ++ RF+ + + ST+ ++ + T+K EI
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
IVV D+T+ W+ EL + I
Sbjct: 69 HSLAPMYYRGAQAAIVV----YDITNEES---FARAKNWVK-ELQRQA--------SPNI 112
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSE 133
I ++GNK+D+ ++ RAV ++
Sbjct: 113 VIALSGNKADL-ANKRAVDFQEAQS 136
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 4e-09
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A A ++VY T ESF K + +E++ Q I I ++GNK+D+ ++ RAV ++
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADL-ANKRAVDFQE 133
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-07
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A A ++VY T ESF K + +E++ Q +I A L + L +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASP---------NIVIA----LSGNKADLAN 125
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++V F+E + +E SAK + N+ E+F
Sbjct: 126 KRAVD--FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 8e-10
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS A F+L +S S+++V + E+R + +P
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN---VP 115
Query: 204 IVVAGNKSDM 213
IV+ G K D+
Sbjct: 116 IVLVGTKLDL 125
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 26/130 (20%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPA 283
+ + DT G + +R LS A F+L +S S+++V + E+R +
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNV---- 114
Query: 284 MRRLSIATAHAFLLV-------YSTTCLESFQSVKCYFEEIREQRQD---FQLLECSAKD 333
+LV L +V + E R+ +ECS+K
Sbjct: 115 ----------PIVLVGTKLDLRDDKGYLADHTNVITS-TQGEELRKQIGAAAYIECSSKT 163
Query: 334 NYNIKEVFRT 343
N+K VF T
Sbjct: 164 QQNVKAVFDT 173
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
M ++ I+ V +G VGK+C+L + N + Y TV D +S + V +
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVN 58
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-10
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
++ILG GVGK+ ++ +++ +S++Y++T+ D +++ V + +I
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
++V D+T+ + + + W E L S +
Sbjct: 71 QSLGVAFYRGADCCVLV----FDVTAPNT---FKTLDSWRD-EF--LIQA--SPRDPENF 118
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEWL 135
P VV GNK D+ +R V + W
Sbjct: 119 PFVVLGNKIDLE--NRQVATKRAQAWC 143
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-09
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDFQEIPIVVAGNKSDMTSHHRAV 220
A +LV+ T +F+++ + +E Q +D + P VV GNK D+ +R V
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A +LV+ T +F+++ + +E Q F+++ + LE+
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF---------PFVVLGNKIDLEN 131
Query: 307 FQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
Q + + + E SAK+ N+++ F+T
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 9e-10
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ ++
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
+VV D+T+ + + ++W+ ++ R G ++
Sbjct: 79 RSLIPSYIRDSTVAVVV----YDITNVNS---FQQTTKWID-DVRTER--------GSDV 122
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
I++ GNK+D+ R V +E+
Sbjct: 123 IIMLVGNKTDLA-DKRQVSIEE 143
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ ++VY T + SFQ + +++R +R ++ I++ GNK+D+ R V +E+
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLA-DKRQVSIEE 143
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ ++VY T + SFQ + +++R +R + LV + T L
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTERGS---------DVIIM----LVGNKTDLAD 135
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+ V EE + + +E SAK YN+K++FR
Sbjct: 136 KRQVS--IEEGERKAKELNVMFIETSAKAGYNVKQLFRR 172
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 41/154 (26%)
Query: 1 MKPVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK 59
+ P +++ +LG GVGKS I+ RF+ + + T+ ++ G K
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73
Query: 60 -EI----------------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLR 96
I ++V D+T + +W+ EL +
Sbjct: 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIV----YDITKQDS---FYTLKKWVK-ELKEHG 125
Query: 97 YVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLED 130
+ I + +AGNK D+ S R V L+D
Sbjct: 126 --------PENIVMAIAGNKCDL-SDIREVPLKD 150
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ A ++VY T +SF ++K + +E++E + I + +AGNK D+ S R V L+D
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDL-SDIREVPLKD 150
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ A ++VY T +SF ++K + +E++E + +I A + + L
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPE---------NIVMA----IAGNKCDLSD 142
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDEN 358
+ V ++ +E + ++E SAK+ NI+E+F+ QI + EN
Sbjct: 143 IREVP--LKDAKEYAESIGAIVVETSAKNAINIEELFQG--ISRQIPPLDPHEN 192
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-09
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
++ +LVY T +SFQ VK + +E+R+ + EI + + GNK D+ R V +++
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLE-KERHVSIQE 133
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-09
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+V+LG VGK+ ++ R+ N ++D++ +T+ ++ ++G + I
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I+V D+T + V W+ EL K+ G+EI
Sbjct: 69 HALGPIYYRDSNGAILV----YDITDEDS---FQKVKNWVK-ELRKML--------GNEI 112
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
+ + GNK D+ R V +++
Sbjct: 113 CLCIVGNKIDLE-KERHVSIQE 133
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-07
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
++ +LVY T +SFQ VK + +E+R+ + I +V + LE
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGN---------EICL----CIVGNKIDLEK 125
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353
+ V +E + + SAK N I+E+F +++ T
Sbjct: 126 ERHVS--IQEAESYAESVGAKHYHTSAKQNKGIEELFLD--LCKRMIET 170
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-09
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ LL +S +SFQ++ + +E ++ + P V+ GNK D++ R V E+
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEE 137
Query: 225 VDIL-DTCGDLQF 236
GD +
Sbjct: 138 AQAWCRDNGDYPY 150
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-09
Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 38/146 (26%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+++LG GVGKS ++ R++ N + + T+ + ++D V + +I
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
++ + +++S W E + Y +
Sbjct: 70 RSLRTPFYRGSDCCLLT----FSVDDSQS---FQNLSNWKK-EF--IYYA--DVKEPESF 117
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEW 134
P V+ GNK D++ R V E+ W
Sbjct: 118 PFVILGNKIDIS--ERQVSTEEAQAW 141
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-05
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 37/120 (30%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQFPAM----------RRLSIATAH 293
+ LL +S +SFQ++ + +E ++ FP + R++S A
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 139
Query: 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353
A+ C D+ E SAKD N+ F + ++L T
Sbjct: 140 AW-------C---------------RDNGDYPYFETSAKDATNVAAAFEEAVR--RVLAT 175
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-09
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ A ++VY T E+F ++K + E+R+ I + +AGNK D+T R V D
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLT-DVREVMERD 133
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 3e-09
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+ +LG GVGKS I+ RF+ +++ T+ ++ K I
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I+V D+T + W+ EL + I
Sbjct: 69 RALAPMYYRGSAAAIIV----YDITKEET---FSTLKNWVR-ELRQHG--------PPSI 112
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
+ +AGNK D+T R V D
Sbjct: 113 VVAIAGNKCDLT-DVREVMERD 133
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 3e-07
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ A ++VY T E+F ++K + E+R+ SI A + + L
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPP---------SIVVA----IAGNKCDLTD 125
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353
+ V + ++ +E SAK+ NI E+F +I +T
Sbjct: 126 VREVM--ERDAKDYADSIHAIFVETSAKNAININELFIE--ISRRIPST 170
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-08
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE-IPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T +SF++++ ++ +++ ++ + + + GNK D+ H R + E
Sbjct: 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL-EHMRTIKPEK 137
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 39/149 (26%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHV-GAVTIK-EI------ 61
+++V+LG GK+ + F T+ +Y+ T+ D + R + G + + +I
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 62 ----------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFG 105
++V D+T++ +LED W + K+
Sbjct: 67 TIGGKMLDKYIYGAQGVLLV----YDITNYQSFENLED---WYT-VVKKVS-----EESE 113
Query: 106 DEIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+ + + GNK D+ H R + E +
Sbjct: 114 TQPLVALVGNKIDL-EHMRTIKPEKHLRF 141
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A LLVY T +SF++++ ++ +++ ++ + + LV + LE
Sbjct: 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV----------ALVGNKIDLEH 129
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+++K E+ Q F SAK ++ F+
Sbjct: 130 MRTIK--PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
I DT G +F R +I + AH ++VY T ESF +VK + +EI +
Sbjct: 69 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--N 121
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+ ++ GNK D+T + V
Sbjct: 122 VNKLLVGNKCDLT-TKKVVDYTT 143
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGKSC+L RF +TY++ Y ST+ DF + + + I +
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTIKLQIWDT 72
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ +S++R H +V +W L+ + + +S + +
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW-------LQEIDRYAS--ENVN 123
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+T + V
Sbjct: 124 KLLVGNKCDLT-TKKVVDYTT 143
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 35/149 (23%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
I DT G +F R +I + AH ++VY T ESF +VK + +EI
Sbjct: 69 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY------ 117
Query: 282 PAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIK 338
A+ + L+ C L + + V + +E LE SAK+ N++
Sbjct: 118 --------ASENVNKLLVGNKCDLTTKKVVD--YTTAKEFADSLGIPFLETSAKNATNVE 167
Query: 339 EVFRTFLTL------SQILTTNGDENSLK 361
+ F T +++++K
Sbjct: 168 QSFMTMAAEIKKRMGPGATAGGAEKSNVK 196
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T ++F + + E+ +I ++ GNK D +R V +
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDK--ENREVDRNE 142
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 34/100 (34%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR-------------------EQRQ---------- 322
A +LVY T ++F + + E+ E R+
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA 147
Query: 323 ---DFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENS 359
+E SAK ++ F + +I+ T G S
Sbjct: 148 RKHSMLFIEASAKTCDGVQCAFEE--LVEKIIQTPGLWES 185
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
++++I+G GVGKS +L RF +T+ +T+ DF V +++ +
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATI----GVDFKVKTISVDGNKAKLAIWDT 71
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ S++R + WL E +++ ++I
Sbjct: 72 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN-E-------LETYCTRNDIV 123
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D +R V +
Sbjct: 124 NMLVGNKIDK--ENREVDRNE 142
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-08
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T +SF +++ + I E ++ ++ GNK D+ R V E
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVN-DKRQVSKER 135
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-07
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A +LVY T +SF +++ + I E A+A ++ C +
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEH--------------ASADVEKMILGNKCDVN 126
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E + + +E SAK N N++ F T
Sbjct: 127 DKRQVS--KERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGK+C+L RF + ++ + ST+ DF + + + I +
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI----GIDFKIRTIELDGKRIKLQIWDT 64
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R +++ W +R + + +S ++
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW-------IRNIEEHAS--ADVE 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+ R V E
Sbjct: 116 KMILGNKCDVN-DKRQVSKER 135
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
I DT G +F R +I + AH ++VY T ESF +VK + +EI +
Sbjct: 86 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--N 138
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+ ++ GNK D+T + V
Sbjct: 139 VNKLLVGNKCDLT-TKKVVDYTT 160
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 29/128 (22%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
I DT G +F R +I + AH ++VY T ESF +VK + +EI
Sbjct: 86 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY------ 134
Query: 282 PAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIK 338
A+ + L+ C L + + V + +E LE SAK+ N++
Sbjct: 135 --------ASENVNKLLVGNKCDLTTKKVVD--YTTAKEFADSLGIPFLETSAKNATNVE 184
Query: 339 EVFRTFLT 346
+ F T
Sbjct: 185 QSFMTMAA 192
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGKSC+L RF +TY++ Y ST+ DF + + + I +
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTIKLQIWDT 89
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ +S++R H +V +W L+ + + +S + +
Sbjct: 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW-------LQEIDRYAS--ENVN 140
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+T + V
Sbjct: 141 KLLVGNKCDLT-TKKVVDYTT 160
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A F+L+Y T ESF +V+ + +I+ D +++ GNK DM R V E
Sbjct: 81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDME-DERVVSSER 135
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A F+L+Y T ESF +V+ + +I+ + +A +L+ C +E
Sbjct: 81 AMGFILMYDITNEESFNAVQDWSTQIKTY--------------SWDNAQVLLVGNKCDME 126
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRR 363
+ V E R+ F+ E SAKDN N+K+ F + I +
Sbjct: 127 DERVVS--SERGRQLADHLGFEFFEASAKDNINVKQTFER--LVDVICEKMSESLDTADP 182
Query: 364 SSAYVNKGK 372
+ +G
Sbjct: 183 AVTGAKQGP 191
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
+++I+G VGK+ L R+ ++++ + STV DF V + K I + +
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRIKLQIWDT 64
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R V +W + S D
Sbjct: 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW-------STQIKTYSW--DNAQ 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK DM R V E
Sbjct: 116 VLLVGNKCDME-DERVVSSER 135
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A L+VY T ++ + + + R I++ GNK+D+ R V E+
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADL-EAQRDVTYEE 142
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI-------- 61
+ +I+G GVGKSC+L +F + T+ + +R V IK +I
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+T +S WL + L
Sbjct: 77 FRAVTRSYYRGAAGALMV----YDITRRST---YNHLSSWLT-DARNLT--------NPN 120
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I++ GNK+D+ R V E+ ++
Sbjct: 121 TVIILIGNKADL-EAQRDVTYEEAKQF 146
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A L+VY T ++ + + + R + +L+ + LE
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTDARNL--------------TNPNTVIILIGNKADLE 133
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ + V +EE ++ + LE SAK N+++ F
Sbjct: 134 AQRDVT--YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY ++++V+ + +E+R+ I I++ GNKSD+ H RAV ++
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDL-RHLRAVPTDE 132
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-------- 61
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK +I
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+ H E+V W L+ + +
Sbjct: 67 YRRITSAYYRGAVGALLV----YDIAKHLT---YENVERW-------LKELRDHAD--SN 110
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I I++ GNKSD+ H RAV ++ +
Sbjct: 111 IVIMLVGNKSDL-RHLRAVPTDEARAF 136
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY ++++V+ + +E+R+ A ++ +LV + + L
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNKSDLR 123
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++V +E R ++ + +E SA D+ N++E F+ LT
Sbjct: 124 HLRAVP--TDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-08
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVD 226
A+ +L Y T SF SV + E++R+ I ++ GNKSD+ S R V L +
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDL-SELREVSLAEAQ 158
Query: 227 IL-DTCGDLQF 236
L + L
Sbjct: 159 SLAEHYDILCA 169
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 35/145 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+LV++G VGK+C+++RF +S+R ST+ DF + + I+ + +
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI----GVDFTMKTLEIQGKRVKLQIWDT 85
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ S++R+ + V W+ ++ K G I
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIE-DVRKYA--------GSNIV 136
Query: 110 IVVAGNKSDMTSHHRAVHLEDVSEW 134
++ GNKSD+ S R V L +
Sbjct: 137 QLLIGNKSDL-SELREVSLAEAQSL 160
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 20/112 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A+ +L Y T SF SV + E++R+ LL+ + + L
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS-------------NIVQLLIGNKSDLSE 148
Query: 307 FQSVKCYFEEIR---EQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355
+ V E + E +E SAKD+ N++E F ++++ +G
Sbjct: 149 LREVS--LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR--VATELIMRHG 196
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
H ++VY T ESF +VK + EI + D + ++ GNK+D + V ED
Sbjct: 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDD---VCRILVGNKNDDP-ERKVVETED 135
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
H ++VY T ESF +VK + EI + D +LV +
Sbjct: 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC--------------RILVGNKNDDPE 127
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+ V+ E+ + + QL E SAK+N N++E+F
Sbjct: 128 RKVVE--TEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-07
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 36/141 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+I+G GVGKS +L RF NT+S Y +T+ DF + V I + +
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGEKVKLQIWDT 65
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ ++++R H +V WL+ + + D++
Sbjct: 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLH----------EINQNCDDVC 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK+D + V ED
Sbjct: 116 RILVGNKNDDP-ERKVVETED 135
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A FLL+Y ESF +V+ + +I+ D +++ GNK D+ R V ED
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDL-EDERVVPAED 149
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A FLL+Y ESF +V+ + +I+ + +A +++ C LE
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTY--------------SWDNAQVILVGNKCDLE 140
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E+ R F+ E SAK+N N+K+VF +
Sbjct: 141 DERVVP--AEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G VGK+ L R+ ++++ + STV DF V V + I +
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTVYRHDKRIKLQIWDT 78
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R V +W + S D
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW-------ATQIKTYSW--DNAQ 129
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK D+ R V ED
Sbjct: 130 VILVGNKCDL-EDERVVPAED 149
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T E+F + + E+ R+ + I++ GNKSD+ R V E+
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDL-ESRRDVKREE 148
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 35/145 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+ +I+G GVGKSC+L +F + + T+ +F V I I +
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----GVEFGARMVNIDGKQIKLQIWDT 77
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG +S S++R ++ W L Q SS +
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW-------LEDARQHSS--SNMV 128
Query: 110 IVVAGNKSDMTSHHRAVHLEDVSEW 134
I++ GNKSD+ R V E+ +
Sbjct: 129 IMLIGNKSDL-ESRRDVKREEGEAF 152
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY T E+F + + E+ R+ ++++ +L+ + + LE
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQH--------------SSSNMVIMLIGNKSDLE 139
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
S + VK EE + +E SAK N++E F
Sbjct: 140 SRRDVK--REEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+H ++VY T ESF VK + +EI + ++ GNK D+ R V +
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLK-DKRVVEYDV 135
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
+H ++VY T ESF VK + +EI AT+ L+ C L+
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRY--------------ATSTVLKLLVGNKCDLK 126
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRR 363
+ V+ ++ +E LE SA D+ N+++ FLT+++ + + + +L
Sbjct: 127 DKRVVE--YDVAKEFADANKMPFLETSALDSTNVEDA---FLTMARQIKESMSQQNLNET 181
Query: 364 SSAYVNKGKV 373
+ +KG V
Sbjct: 182 TQKKEDKGNV 191
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGKSC+L RF +TY++ Y ST+ DF + V + + +
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI----GVDFKIKTVELDGKTVKLQIWDT 64
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ +S++R H V W L+ + + ++ +
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW-------LQEIDRYAT--STVL 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+ R V +
Sbjct: 116 KLLVGNKCDLK-DKRVVEYDV 135
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
AHA LL+Y T SF +++ + EI E Q ++ +++ GNK D +H R V ED
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDS-AHERVVKRED 138
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
AHA LL+Y T SF +++ + EI E A L++
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEY--------------AQHDVALMLLGNKVDSA 129
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ VK E+ + + +E SAK N+ F
Sbjct: 130 HERVVK--REDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 46/147 (31%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTY-SDRYRSTVEDLYSRDFHVGAVTIKEIPIVV---- 65
+++++G GVGK+C+L RF + + + STV DF + + + + +
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV----GIDFRNKVLDVDGVKVKLQMWD 66
Query: 66 -AGN---KSDMTSHHRAVH-------------LEDVSEWL-----YCELPKLRYVIQSSS 103
AG +S +++R H +++ WL Y +
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ------------ 114
Query: 104 FGDEIPIVVAGNKSDMTSHHRAVHLED 130
++ +++ GNK D +H R V ED
Sbjct: 115 --HDVALMLLGNKVDS-AHERVVKRED 138
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A FLL++ T +SF +V+ + +++ + IV+ GNK+D+ R V+
Sbjct: 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQAN-AYCENPDIVLIGNKADLP-DQREVNERQ 163
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-08
Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 33/182 (18%)
Query: 198 DFQEIPIVVAGNKSDMTSHHRA-VHLEDVDILDTCGDLQFPAMRRLSIAT-----AHAFL 251
DF+E +V + +S VHL+ + DT G +F R S+ T A FL
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQ---LWDTAGQERF----R-SLTTAFFRDAMGFL 112
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
L++ T +SF +V+ + +++ + +L+ + L + V
Sbjct: 113 LMFDLTSQQSFLNVRNWMSQLQAN------------AYCENPDIVLIGNKADLPDQREVN 160
Query: 312 CYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVN 369
+ RE + E SA N+++ TL ++ ++ K + VN
Sbjct: 161 --ERQARELADKYGIPYFETSAATGQNVEKA---VETLLDLIMKRMEQCVEKTQIPDTVN 215
Query: 370 KG 371
G
Sbjct: 216 GG 217
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 44/155 (28%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+L+ LG GVGK+ L R+ N ++ ++ +TV DF V + K+
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV----GIDFREKRVVYNAQGPNGSSGKA 81
Query: 71 DM------------------TSHHRAVH-------------LEDVSEWLYCELPKLRYVI 99
T+ R +V W+ +
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--------SQL 133
Query: 100 QSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
Q++++ + IV+ GNK+D+ R V+ E
Sbjct: 134 QANAYCENPDIVLIGNKADLP-DQREVNERQAREL 167
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T +F ++K +F+ + E D E +++ GNKSDM R V +
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDM--ETRVVTADQ 129
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-07
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 31/83 (37%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR------------------EQRQ----------- 322
A +LVY T +F ++K +F+ + E R
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 135
Query: 323 --DFQLLECSAKDNYNIKEVFRT 343
+E SAK++ N+ E+F T
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFT 158
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-06
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQIWDT 59
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R ++ +W + V + ++ DE
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW-------FKTVNEHAN--DEAQ 110
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNKSDM R V +
Sbjct: 111 LLLVGNKSDM--ETRVVTADQ 129
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A+A +L Y TC ESF+ + + EI + + ++ V+ GNK D+ + R V +
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDL-AERREVSQQR 153
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A+A +L Y TC ESF+ + + EI + A+ ++ L
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQY--------------ASNKVITVLVGNKIDLA 144
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRR 363
+ V + E + QD LE SAK++ N++++ FL L+ L + +N+L
Sbjct: 145 ERREVS--QQRAEEFSEAQDMYYLETSAKESDNVEKL---FLDLACRLISEARQNTLVNN 199
Query: 364 SS 365
S
Sbjct: 200 VS 201
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 41/147 (27%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI------- 61
++V++G GVGK+C+++RF + +T+ D + + +K +I
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 62 ---------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGD 106
I+ D+T + EW LR + Q +S +
Sbjct: 87 RFRSITQSYYRSANALILT----YDITCEES---FRCLPEW-------LREIEQYAS--N 130
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSE 133
++ V+ GNK D+ + R V + E
Sbjct: 131 KVITVLVGNKIDL-AERREVSQQRAEE 156
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A L+VY + S+++ + E+RE D + + + GNKSD+ +H RAV E+
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDL-AHLRAVPTEE 140
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-------- 61
++V++G GVGKS +L RF N ++ +ST+ + +R + IK +I
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D++ E+ + W L + +++ D
Sbjct: 75 YRAITSAYYRGAVGALIV----YDISKSSS---YENCNHW-------LSELRENAD--DN 118
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+ + + GNKSD+ +H RAV E+ +
Sbjct: 119 VAVGLIGNKSDL-AHLRAVPTEESKTF 144
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 24/134 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A L+VY + S+++ + E+RE A + L+ + + L
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELREN--------------ADDNVAVGLIGNKSDLA 131
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT-----LSQILTTNGDEN 358
++V EE + Q E SA ++ N+ + F + +S+ GD +
Sbjct: 132 HLRAVP--TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189
Query: 359 SLKRRSSAYVNKGK 372
+ + A G
Sbjct: 190 ANGNANGASAPNGP 203
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-08
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
I DT G ++ R +I + A LLV+ T +++ V+ + +E+ + +
Sbjct: 78 IWDTAGLERY----R-AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--T 130
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
I +++ GNKSD+ S R V E+
Sbjct: 131 IVVMLVGNKSDL-SQAREVPTEE 152
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-07
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 41/148 (27%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI------- 61
++V++G GVGK+ +L RF N +S R+T+ + +R +G +K +I
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 62 ---------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGD 106
++V D+T H V W L+ + +
Sbjct: 86 RYRAITSAYYRGAVGALLV----FDLTKHQT---YAVVERW-------LKELYDHAE--A 129
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I +++ GNKSD+ S R V E+ +
Sbjct: 130 TIVVMLVGNKSDL-SQAREVPTEEARMF 156
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 29/128 (22%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
I DT G ++ R +I + A LLV+ T +++ V+ + +E+ +
Sbjct: 78 IWDTAGLERY----R-AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH------ 126
Query: 282 PAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIK 338
A A +++ L + V EE R + LE SA D+ N++
Sbjct: 127 --------AEATIVVMLVGNKSDLSQAREVP--TEEARMFAENNGLLFLETSALDSTNVE 176
Query: 339 EVFRTFLT 346
F T L
Sbjct: 177 LAFETVLK 184
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A F+L+Y T ESF +V+ + +I+ D +++ GNK DM R V E
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDME-EERVVPTEK 150
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A F+L+Y T ESF +V+ + +I+ + +A +++ C +E
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTY--------------SWDNAQVILVGNKCDME 141
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E+ + ++ F E SAK+N ++++ F +
Sbjct: 142 EERVVP--TEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
+L+I+G VGK+ L R+ +T++ + STV DF V V K + + +
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV----GIDFKVKTVYRHEKRVKLQIWDT 79
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R V +W + S D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW-------ATQIKTYSW--DNAQ 130
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK DM R V E
Sbjct: 131 VILVGNKCDME-EERVVPTEK 150
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-08
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY ++++V+ + +E+R+ I I++ GNKSD+ H RAV ++
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDL-RHLRAVPTDE 156
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-------- 61
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK +I
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+ H E+V W L+ + +
Sbjct: 91 YRAITSAYYRGAVGALLV----YDIAKHLT---YENVERW-------LKELRDHAD--SN 134
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I I++ GNKSD+ H RAV ++ +
Sbjct: 135 IVIMLVGNKSDL-RHLRAVPTDEARAF 160
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY ++++V+ + +E+R+ A ++ +LV + + L
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNKSDLR 147
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++V +E R ++ +E SA D+ N++ F+T LT
Sbjct: 148 HLRAVP--TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A FLL++ T +SF +V+ + +++ + IV+ GNKSD+ RAV E+
Sbjct: 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLE-DQRAVKEEE 149
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 44/151 (29%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+ + LG GVGK+ +L ++ ++ ++ +TV DF V + A +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV----GIDFREKRVVYRANGPDGAVGRG 67
Query: 71 DM------------------TSHHRAVH-------------LEDVSEWLYCELPKLRYVI 99
T+ R +V W+ +
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWI--------SQL 119
Query: 100 QSSSFGDEIPIVVAGNKSDMTSHHRAVHLED 130
Q ++ + IV+ GNKSD+ RAV E+
Sbjct: 120 QMHAYSENPDIVLCGNKSDLE-DQRAVKEEE 149
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 42/163 (25%)
Query: 198 DFQEIPIVVAGNKSDMTSHH-RAVHLEDVDILDTCGDLQFPAMRRLSIAT-----AHAFL 251
DF+E +V N D + +HL+ + DT G +F R S+ T A FL
Sbjct: 47 DFREKRVVYRANGPDGAVGRGQRIHLQ---LWDTAGLERF----R-SLTTAFFRDAMGFL 98
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA------FLLVYSTTCLE 305
L++ T +SF +V+ + +++ HA +L + + LE
Sbjct: 99 LLFDLTNEQSFLNVRNWISQLQM------------------HAYSENPDIVLCGNKSDLE 140
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++VK EE RE ++ E SA + NI L
Sbjct: 141 DQRAVK--EEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T E++ ++ + + R I I++ GNK D+ R V +
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDL-DADREVTFLE 137
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-07
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI-------- 61
+ +++G G GKSC+L +F+ + D T+ + S+ +VG +K +I
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+TS ++ W L +S
Sbjct: 72 FRSVTRSYYRGAAGALLV----YDITSRET---YNALTNW-------LTDARMLAS--QN 115
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I I++ GNK D+ R V + S +
Sbjct: 116 IVIILCGNKKDL-DADREVTFLEASRF 141
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY T E++ ++ + + R A+ + +L + L+
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTDARML--------------ASQNIVIILCGNKKDLD 128
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ + V F E Q + LE SA N++E F
Sbjct: 129 ADREVT--FLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T E++ S+ + + R I +++ GNK D+ R V +
Sbjct: 98 AAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDL-DPEREVTFLE 152
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI-------- 61
+ +++G G GKSC+L +F+ N + T+ + SR +VG T+K +I
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+TS ++ W L +S
Sbjct: 87 FRSVTRSYYRGAAGALLV----YDITSRET---YNSLAAW-------LTDARTLAS--PN 130
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I +++ GNK D+ R V + S +
Sbjct: 131 IVVILCGNKKDL-DPEREVTFLEASRF 156
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY T E++ S+ + + R A+ + +L + L+
Sbjct: 98 AAGALLVYDITSRETYNSLAAWLTDARTL--------------ASPNIVVILCGNKKDLD 143
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V F E Q + LE SA N++E F
Sbjct: 144 PEREVT--FLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-08
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM-----TSHHRAVH 221
A LL+Y TC +SF +++ + + I + + +PI++ GNK+D+ T + V
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDTAATEGQKCVP 158
Query: 222 LED 224
Sbjct: 159 GHF 161
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 23/108 (21%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV------YS 300
A LL+Y TC +SF +++ + + I + + +LV
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE-------------TVPIMLVGNKADIRD 147
Query: 301 TTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
T E + V + E SAKD NI E
Sbjct: 148 TAATEGQKCVP--GHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
++V+ G VGKS L R N + + +T+ DF + + + V+
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATL----GVDFQMKTLIVDGERTVLQLWDT 84
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG +S S+ R ++ EW + + ++ + +P
Sbjct: 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW-------VDMIEDAAH--ETVP 135
Query: 110 IVVAGNKSDM-----TSHHRAVHLED 130
I++ GNK+D+ T + V
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHF 161
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-08
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G +F +R L FLL +S SFQ+V + EIR P
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK---AP 126
Query: 204 IVVAGNKSDM 213
I++ G +SD+
Sbjct: 127 IILVGTQSDL 136
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 28/131 (21%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPA 283
+ + DT G +F +R L FLL +S SFQ+V + EIR
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA---- 125
Query: 284 MRRLSIATAHAFLLV-------YSTTCLESFQSVKC---YFEEIREQRQDFQL---LECS 330
+LV L K E + ++ + +ECS
Sbjct: 126 ----------PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175
Query: 331 AKDNYNIKEVF 341
A N+KEVF
Sbjct: 176 ALTQKNLKEVF 186
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+ ++ V++G VGK+ ++ + N Y Y T D +S V ++
Sbjct: 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVR 69
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-08
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
+ DT G +F R +I T A +LVY T +F ++K +F+ + E D E
Sbjct: 73 LWDTAGQERF----R-TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--E 125
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+++ GNKSDM R V +
Sbjct: 126 AQLLLVGNKSDM--ETRVVTADQ 146
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-07
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 31/86 (36%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR------------------EQRQ----------- 322
A +LVY T +F ++K +F+ + E R
Sbjct: 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 152
Query: 323 --DFQLLECSAKDNYNIKEVFRTFLT 346
+E SAK++ N+ E+F T
Sbjct: 153 ELGIPFIESSAKNDDNVNEIFFTLAK 178
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDT 76
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R ++ +W + V + ++ DE
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW-------FKTVNEHAN--DEAQ 127
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNKSDM R V +
Sbjct: 128 LLLVGNKSDM--ETRVVTADQ 146
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 7e-08
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T E+F + + + I + + + +++ GNK D R + +
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCE-TDREITRQQ 153
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A +LVY T E+F + + + I + A+ A LL+ E
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKY--------------ASEDAELLLVGNKLDCE 144
Query: 306 SFQSVKCYFEEIR---EQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ + + ++ +Q + E SAKDN+N+ E+F +
Sbjct: 145 TDREIT--RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 28/141 (19%), Positives = 66/141 (46%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
++++I+G +GVGK+ +++RF +T+ + +STV DF + V ++ I +
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV----GVDFKIKTVELRGKKIRLQIWDT 82
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG S ++++R+ +D+ +W ++ + + +S ++
Sbjct: 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW-------MKMIDKYAS--EDAE 133
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK D R + +
Sbjct: 134 LLLVGNKLDCE-TDREITRQQ 153
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV+LG VGKS I+ RF+ N +++ T+ ++ + T+K EI
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 62 ----PIVVAGNKSDMTSHH--RAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGN 115
P ++ + + + W+ EL + +I I + GN
Sbjct: 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVK-ELHEQA--------SKDIIIALVGN 116
Query: 116 KSDMT--SHHRAVHLEDVSEW 134
K D R V E+ +
Sbjct: 117 KIDXLQEGGERKVAREEGEKL 137
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ A A L+VY T +SF + + +E+ EQ
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK-------- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
L+ L+ K EE + + + E SAK N+ +VF
Sbjct: 108 ----DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIV 205
+ DT G + +R LS + A L+ + + E+ SV + EI+E + ++
Sbjct: 59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKML 115
Query: 206 VAGNKSDM 213
+ G KSD+
Sbjct: 116 LVGCKSDL 123
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+ ++V++G GK+ +L F + + + Y TV + Y+ F + I+
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE 56
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 37/134 (27%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMR 285
+ DT G + +R LS + A L+ + + E+ SV + EI+E
Sbjct: 59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE----------- 107
Query: 286 RLSIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLE 328
LLV + L + + +++ + +E
Sbjct: 108 -------FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160
Query: 329 CSAKDN-YNIKEVF 341
CSA + +++++F
Sbjct: 161 CSALQSENSVRDIF 174
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVA 207
DT G + +R L + + A LL + + E+ S K + EI + +++
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLI 137
Query: 208 GNKSDM 213
G K+D+
Sbjct: 138 GCKTDL 143
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
R +LV++G GK+ +L+ + Y + Y TV + Y+ ++
Sbjct: 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVE 76
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 29/130 (22%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRL 287
DT G + +R L + + A LL + + E+ S K + EI +
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS--------- 131
Query: 288 SIATAHAFLLV---------YSTTCLESFQSVKC-YFEEIREQRQD---FQLLECSAKDN 334
LL+ ST S Q +E+ + LE SA +
Sbjct: 132 -----TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186
Query: 335 -YNIKEVFRT 343
+I +FRT
Sbjct: 187 EKSIHSIFRT 196
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G ++ +R LS A + LL ++ SF ++ + EI+ V+
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLV 133
Query: 208 GNKSDM 213
G K D+
Sbjct: 134 GLKVDL 139
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRL 287
DT G ++ +R LS A + LL ++ SF ++ + EI+ +
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK------- 129
Query: 288 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQLLECSAKDNYNIKEVF 341
+LV L S +E + Q +E S+ + EVF
Sbjct: 130 -------TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+ +++V++G VGK+C+L F Y TV + +S
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI 72
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQEIP 203
+ + DT G + +R LS A F+L +S S+++V E++ +P
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG---VP 114
Query: 204 IVVAGNKSDM 213
IV+ G K D+
Sbjct: 115 IVLVGTKLDL 124
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 26/131 (19%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQFPA 283
+ + DT G + +R LS A F+L +S S+++V E++
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV---- 113
Query: 284 MRRLSIATAHAFLLV-------YSTTCLESFQSVKC-YFEEIREQRQD---FQLLECSAK 332
+LV + E ++ +ECS+K
Sbjct: 114 ----------PIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163
Query: 333 DNYNIKEVFRT 343
N+K VF
Sbjct: 164 SQENVKGVFDA 174
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
M + I+ V +G VGK+C+L + NT+ Y TV D +S + V T+
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVN 57
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 136
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 137 IILVGTKLDL 146
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 32/136 (23%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQ------- 275
++ + DT G + +R LS FL+ +S SF++V+ ++ E+R
Sbjct: 79 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 138
Query: 276 --------RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327
R D + +L + L + + + L
Sbjct: 139 LVGTKLDLRDDKD--TIEKLKEKKLT---PITYPQGLAMAKEIGAV-----------KYL 182
Query: 328 ECSAKDNYNIKEVFRT 343
ECSA +K VF
Sbjct: 183 ECSALTQRGLKTVFDE 198
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 1 MKPVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKE 60
M+ + + I+ V++G VGK+C+L + N + Y TV D YS + V +
Sbjct: 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 80
Query: 61 IPIVVAG------------NKSDMTSHHRAVH----LEDVSEWLYCELPKLRYVIQSSSF 104
AG ++D+ ++ E+V Y E+
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV---------RHH 131
Query: 105 GDEIPIVVAGNKSDM 119
PI++ G K D+
Sbjct: 132 CPNTPIILVGTKLDL 146
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SFQ+VK + + E ++ +P
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYAPNVPF 125
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 126 LLIGTQIDL 134
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 25/128 (19%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
++ V++G VGK+C+L + + + + Y TV D Y+ VG AG
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 68 N------------KSDMTSHHRAVH----LEDVSEWLYCELPKLRYVIQSSSFGDEIPIV 111
+D+ +V ++V E EL + +P +
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL---------KEYAPNVPFL 126
Query: 112 VAGNKSDM 119
+ G + D+
Sbjct: 127 LIGTQIDL 134
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 31/156 (19%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
+P V +T + L + DT G + +R LS FL+ +S S
Sbjct: 48 VPTVFDHYAVSVTVGGKQYLLG---LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS 104
Query: 262 FQSVKCY-FEEIREQRQDFQFPAMRRLSIATAHAFLLV-------YSTTCLESFQSVKCY 313
FQ+VK E++E + FLL+ L +K
Sbjct: 105 FQNVKEEWVPELKEYAPNV--------------PFLLIGTQIDLRDDPKTLARLNDMKEK 150
Query: 314 F------EEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+++ ++ +ECSA +K VF
Sbjct: 151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIV 205
+ DT G + +R LS L+ +S +S +++ + E++ + +PI+
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPII 133
Query: 206 VAGNKSDM 213
+ NK D+
Sbjct: 134 LVANKKDL 141
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-07
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 36/135 (26%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMR 285
+ DT G + +R LS L+ +S +S +++ + E++
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH----------- 125
Query: 286 RLSIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLE 328
+LV +K ++ R + LE
Sbjct: 126 -------FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178
Query: 329 CSAKDNYNIKEVFRT 343
CSAK ++EVF T
Sbjct: 179 CSAKTKEGVREVFET 193
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
R +LV++G GK+C+L F + + + Y TV + Y D V ++
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVE 74
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 38/152 (25%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDR--YRSTVE-DLYSRDFHVGAVTIKEIPIVV- 65
R++L+I+G G GK+ +L++ + SD +TV D+ + +++ + V
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 66 --AGNKS-------------------DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSF 104
AG + D++ V + + WL +
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV--DAMKPWL----------FNIKAR 109
Query: 105 GDEIPIVVAGNKSDMTS-HHRAVHLEDVSEWL 135
P+++ G D++ R + +++ L
Sbjct: 110 ASSSPVILVGTHLDVSDEKQRKACMSKITKEL 141
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 167 AHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDV 225
+L VY + ++ ++K + I+ + P+++ G D++ +
Sbjct: 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARASS---SPVILVGTHLDVSDEKQRKACMSK 136
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+ FPA+R E ++ + I + +F+
Sbjct: 137 ITKELLNKRGFPAIRDYHF-----------VNATEESDALAKLRKTIINESLNFKIR 182
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R LS + A L+ + + E+ SV + EI+E + +++
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLV 138
Query: 208 GNKSDM 213
G KSD+
Sbjct: 139 GCKSDL 144
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
N + ++V++G GK+ +L F + + + Y TV + Y+ F + I+
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE 77
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 37/132 (28%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRL 287
DT G + +R LS + A L+ + + E+ SV + EI+E
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE------------- 128
Query: 288 SIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLECS 330
LLV + L + + +++ + +ECS
Sbjct: 129 -----FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183
Query: 331 AKDN-YNIKEVF 341
A + +++++F
Sbjct: 184 ALQSENSVRDIF 195
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R LS L+ +S +S +++ + E++ + +PI++
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN---VPIILV 135
Query: 208 GNKSDM 213
GNK D+
Sbjct: 136 GNKKDL 141
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 36/131 (27%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRL 287
DT G + +R LS L+ +S +S +++ + E++
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH------------- 125
Query: 288 SIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLECS 330
+LV +K EE R+ F LECS
Sbjct: 126 -----FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180
Query: 331 AKDNYNIKEVF 341
AK ++EVF
Sbjct: 181 AKTKEGVREVF 191
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
R +LVI+G GK+C+L F + + + Y TV + Y D V ++
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVE 74
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R L A LL + T SF ++ ++ E+ + +PI+V
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK---VPIIVV 144
Query: 208 GNKSDM 213
G K+D+
Sbjct: 145 GCKTDL 150
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+++V++G G GK+ +L F + + Y TV + Y + V +
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 27/129 (20%), Positives = 41/129 (31%), Gaps = 32/129 (24%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQ------------ 275
DT G + +R L A LL + T SF ++ ++ E+
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 276 ---RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
R+D R + V E +SV LECSA+
Sbjct: 148 TDLRKDKSLVNKLR-----RNGLEPVTYHRGQEMARSVGAV-----------AYLECSAR 191
Query: 333 DNYNIKEVF 341
+ N+ VF
Sbjct: 192 LHDNVHAVF 200
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVA 207
DT G + +R LS L+ +S SF++V+ ++ E+R + PI++
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILV 115
Query: 208 GNKSDM 213
G K D+
Sbjct: 116 GTKLDL 121
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 6e-06
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 32/129 (24%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQ------------ 275
DT G + +R LS L+ +S SF++V+ ++ E+R
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 118
Query: 276 ---RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
R D L T + Q + ++ + LECSA
Sbjct: 119 LDLRDDKDTIEK-----------LKEKKLTPITYPQG-----LAMAKEIGAVKYLECSAL 162
Query: 333 DNYNIKEVF 341
+K VF
Sbjct: 163 TQRGLKTVF 171
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 25/127 (19%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGN 68
+ I+ V++G VGK+C+L + N + Y TV D YS + V + AG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 69 ------------KSDMTSHHRAVH----LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
++D++ ++ E+V Y E+ PI++
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV---------RHHCPNTPIIL 114
Query: 113 AGNKSDM 119
G K D+
Sbjct: 115 VGTKLDL 121
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 8e-06
Identities = 56/454 (12%), Positives = 121/454 (26%), Gaps = 138/454 (30%)
Query: 13 LVILGGQGVGKSC----------ILKRFLFNTY------SDRYRSTVE---DLYSR---D 50
++I G G GK+ + + F + + + +E L + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 51 FHVGAVTIKEIPIV---VAGNKSDMTSHHRAVH----LEDVSEW-------LYCELPKLR 96
+ + I + + + + L +V L C+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----- 267
Query: 97 YVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLED------VSEWLYCELPKLRYVDILDT 150
++ ++ F + A + ++ H ++ L + ++L C L +
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----REV 322
Query: 151 CGDL-----QFPAMRRLSIATAHAFLLV----YSTT---CLESFQSVKCYFEEIREQRQD 198
R +AT + V +T L + E R+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDR 377
Query: 199 ---FQE---IPIVVAGNK-SDMTSHHRAVHLEDV-DILDTCGDL----QFPAMRRLSIAT 246
F IP ++ D+ DV +++ + P +SI
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISI-- 428
Query: 247 AHAFLLVYSTTC----------LESFQSVKCY---------------------------- 268
+ L ++ + K +
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 269 --FEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326
R DF+F + + + A+ S L + Q +K Y I + ++
Sbjct: 488 ERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYER 543
Query: 327 LECSAKD---NYNIKEVFRTFLTLSQILTTNGDE 357
L + D + + L +I DE
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 46/321 (14%), Positives = 93/321 (28%), Gaps = 82/321 (25%)
Query: 75 HHRAVHLE-DVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSE 133
HH H++ + E Y + D + + + +DV +
Sbjct: 1 HHHHHHMDFETGEHQYQ-------------YKDILSVFEDAFVDNFD-------CKDVQD 40
Query: 134 WLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS--VKCYFEE 191
L K I+ + + RL F L S Q V+ + EE
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVS--GTLRL-------F------WTLLSKQEEMVQKFVEE 85
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQ-FP-----------AM 239
+ F PI + S +++E D L D Q F +
Sbjct: 86 VLRINYKFLMSPI---KTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKL 140
Query: 240 RR-LSIATAHAFLLVY-------STTCLESFQS--VKCYFE-EI------REQRQDFQFP 282
R+ L +L+ + L+ S V+C + +I +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 283 AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK-----DNYNI 337
+++L + +++ + ++K I+ + + + N
Sbjct: 201 MLQKLL----YQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 338 KEVFRTFLTLSQILTTNGDEN 358
+ + F +IL T +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQ 276
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 33/152 (21%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV------EDLYSRDFHVGAVTI 58
+ + I++ ++G GK+ +LK+ + T+ + T + + +
Sbjct: 36 LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95
Query: 59 KEIPIVV---AGNKSDMTSHH-----RAVHL--------EDVSEWLYCELPKLRYVIQSS 102
KE G + SH +V++ + WL I+
Sbjct: 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRH--------IE-- 145
Query: 103 SFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+G + P++V NK D + + + ++E
Sbjct: 146 KYGGKSPVIVVMNKIDE-NPSYNIEQKKINER 176
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTT---CLESFQSVKCYFEEIREQRQDFQEIPIV 205
G + + A R+L + + V + + +S++ E + E ++PIV
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+ NK D+ A+ +E V
Sbjct: 140 IQVNKRDLP---DALPVEMV 156
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQEIPIVVA 207
DT G + +R LS FL+ +S SF V+ + E+R + PI++
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN---TPIILV 265
Query: 208 GNKSDM 213
G K D+
Sbjct: 266 GTKLDL 271
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 36/133 (27%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQFPAMRRL 287
DT G + +R LS FL+ +S SF V+ + E+R
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH------------- 255
Query: 288 SIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLECS 330
H +LV +E + K + + ++ + LECS
Sbjct: 256 -----HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310
Query: 331 AKDNYNIKEVFRT 343
A +K VF
Sbjct: 311 ALTQRGLKTVFDE 323
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 373 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.96 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.96 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.96 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.96 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.96 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.96 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.96 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.96 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.96 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.96 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.96 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.96 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.96 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.96 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.96 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.96 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.96 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.96 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.96 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.96 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.96 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.96 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.96 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.96 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.96 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.96 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.96 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.96 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.96 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.96 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.96 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.96 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.96 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.96 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.96 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.96 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.95 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.95 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.95 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.95 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.95 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.95 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.95 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.95 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.95 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.95 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.95 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.95 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.95 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.95 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.95 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.95 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.95 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.95 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.95 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.95 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.95 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.95 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.95 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.95 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.95 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.95 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.95 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.95 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.95 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.95 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.95 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.95 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.95 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.94 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.94 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.94 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.94 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.94 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.94 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.94 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.93 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.93 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.93 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.89 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.93 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.93 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.93 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.93 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.93 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.93 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.93 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.93 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.93 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.92 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.92 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.92 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.92 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.91 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.91 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.91 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.91 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.9 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.9 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.9 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.89 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.89 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.89 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.88 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.88 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.87 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.87 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.87 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.85 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.84 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.84 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.83 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.82 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.82 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.81 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.8 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.8 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.79 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.78 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.76 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.75 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.75 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.75 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.74 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.73 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.71 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.71 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.71 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.69 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.69 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.68 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.68 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.68 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.67 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.67 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.67 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.67 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.66 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.66 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.66 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.66 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.65 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.64 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.64 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.64 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.64 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.64 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.63 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.63 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.63 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.61 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.58 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.58 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.56 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.56 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.56 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.55 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.53 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.52 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.52 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.52 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.52 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.51 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.5 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.49 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.48 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.48 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.48 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.47 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.47 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.46 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.46 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.46 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.45 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.44 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.42 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.4 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.39 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.37 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.37 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.34 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.3 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.29 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.28 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.23 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.22 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.21 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.18 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.13 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.12 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.1 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.06 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.02 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.0 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.94 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.89 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.85 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.84 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.8 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.75 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.74 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.69 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 98.65 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 98.65 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 98.61 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 98.6 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.59 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 98.58 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 98.57 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 98.56 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 98.55 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 98.55 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 98.55 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.54 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 98.54 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.53 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 98.53 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 98.52 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 98.51 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 98.51 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 98.51 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 98.5 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 98.5 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 98.48 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 98.48 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 98.48 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 98.46 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 98.46 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 98.46 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 98.46 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.46 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 98.46 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 98.46 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 98.45 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 98.45 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 98.44 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 98.44 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 98.43 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 98.43 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 98.43 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 98.43 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 98.42 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 98.42 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 98.42 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 98.42 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 98.42 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 98.42 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 98.41 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 98.41 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 98.41 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 98.4 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 98.4 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 98.4 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 98.4 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 98.4 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 98.4 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 98.39 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 98.38 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 98.38 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 98.37 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 98.37 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.37 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 98.36 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 98.36 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 98.36 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 98.36 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 98.36 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 98.36 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 98.36 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 98.35 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 98.34 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 98.34 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 98.34 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 98.34 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 98.33 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 98.33 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 98.33 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 98.33 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.32 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 98.32 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 98.32 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 98.32 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 98.31 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 98.31 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 98.31 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 98.3 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 98.3 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 98.3 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.29 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 98.29 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 98.29 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 98.29 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 98.28 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 98.27 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 98.27 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 98.27 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 98.27 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 98.26 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 98.26 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 98.25 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 98.24 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 97.55 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 98.23 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 98.22 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 98.22 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 98.21 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 98.21 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 98.19 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 98.19 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 98.19 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.13 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 98.13 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 98.09 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.02 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.98 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 97.95 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.91 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.9 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.86 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 97.81 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.79 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.75 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.74 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.74 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.73 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.68 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.66 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.63 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 97.62 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.57 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.56 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 97.5 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.5 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 97.5 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.49 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.47 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 97.46 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.46 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 97.44 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.42 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.42 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.41 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 97.32 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 97.32 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 97.22 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 97.21 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 97.21 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 97.18 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 97.17 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 97.15 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.15 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 97.11 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 97.09 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 97.08 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.08 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 97.05 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.04 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 97.01 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 97.01 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 97.0 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 96.99 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 96.98 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 96.97 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 96.97 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 96.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.92 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 96.81 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 96.77 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 96.74 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.68 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.68 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 96.65 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 96.64 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.63 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 96.63 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 96.48 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.47 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 96.41 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.24 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 96.19 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.16 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 96.15 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 96.14 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 96.12 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.11 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.04 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 95.96 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 95.89 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.89 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 95.87 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 95.86 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.84 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.79 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 95.77 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.77 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.68 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.67 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.63 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.62 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 95.58 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.54 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.49 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.39 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.32 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.28 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.23 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 95.22 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.16 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.14 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.13 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 95.11 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.11 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.1 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.04 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 95.03 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 95.02 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.02 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.01 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 94.98 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 94.96 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 94.91 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 94.9 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 94.86 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.86 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 94.79 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.79 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.74 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 94.71 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.71 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 94.69 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 94.69 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.67 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.65 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.62 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.61 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.6 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.58 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 94.53 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 94.51 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.51 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.5 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 94.49 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.48 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 94.46 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.43 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 94.42 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 94.41 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 94.4 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 94.4 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.37 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.37 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 94.35 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 94.32 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.29 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.28 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.26 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 94.26 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 94.26 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.25 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.19 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 94.18 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.17 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.17 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 94.17 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 94.15 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 94.14 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.14 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 94.14 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.13 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 94.13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 94.11 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 94.11 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 94.1 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 94.08 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.07 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 94.05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 94.03 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.98 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 93.96 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 93.94 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.93 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 93.89 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.89 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 93.88 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.84 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=269.57 Aligned_cols=163 Identities=28% Similarity=0.533 Sum_probs=137.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+.+||+|||++|||||||++||+.+.|...+.||++ +++.+.+.+++..+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~--------------------------- 63 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR--------------------------- 63 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEE---------------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEE---------------------------
Confidence 3579999999999999999999999999999999998 888888888888777
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|+++|..+++.|+++
T Consensus 64 ----------------------------------------------------------l~iwDtaGqe~~~~l~~~~~~~ 85 (216)
T 4dkx_A 64 ----------------------------------------------------------LQLWDTAGLERFRSLIPSYIRD 85 (216)
T ss_dssp ----------------------------------------------------------EEEECCSCTTTCGGGHHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCchhhhhHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++++|||++++.||+++..|+..+..... +++|++|||||+|+.+
T Consensus 86 a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~------------------------------- 132 (216)
T 4dkx_A 86 SAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLAD------------------------------- 132 (216)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGG-------------------------------
T ss_pred ccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHh-------------------------------
Confidence 9999999999999999999999999887653 5677777777777653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.|.|+.++++.+|+.++++|
T Consensus 133 ------------------------------------------------------------~r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 133 ------------------------------------------------------------KRQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHHTCEE
T ss_pred ------------------------------------------------------------cCcccHHHHhhHHHHhCCee
Confidence 34567778899999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.||+++|+.|++..
T Consensus 153 ~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 153 IETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHC
T ss_pred EEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999865
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=215.29 Aligned_cols=165 Identities=22% Similarity=0.270 Sum_probs=133.6
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+++|++|||||||+++|+++.|.. +.||+++.+.+.+.+++..+.
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~------------------------- 55 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHL------------------------- 55 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEE-------------------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEE-------------------------
Confidence 445678999999999999999999999999987 788888777777777776666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+++|||+|+++ ..++
T Consensus 56 ------------------------------------------------------------l~i~Dt~G~~~-----~~~~ 70 (178)
T 2iwr_A 56 ------------------------------------------------------------VLIREEAGAPD-----AKFS 70 (178)
T ss_dssp ------------------------------------------------------------EEEEECSSSCC-----HHHH
T ss_pred ------------------------------------------------------------EEEEECCCCch-----hHHH
Confidence 99999999987 4578
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
+++|++++|||++++.+|+.+..|++.+...... .+.+|+++||||+|+.+.
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--------------------------- 123 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS--------------------------- 123 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTT---------------------------
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc---------------------------
Confidence 8999999999999999999999988877766532 246888899999888531
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ- 322 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~- 322 (373)
..+.+..++++.++...
T Consensus 124 --------------------------------------------------------------~~~~v~~~~~~~~~~~~~ 141 (178)
T 2iwr_A 124 --------------------------------------------------------------SPRVVGDARARALXADMK 141 (178)
T ss_dssp --------------------------------------------------------------BCCCSCHHHHHHHHHHHS
T ss_pred --------------------------------------------------------------ccCcCCHHHHHHHHHhhc
Confidence 01122334455565554
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+++|+||||++|.||+++|+.+++.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 689999999999999999999998653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=216.84 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=135.0
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
+...+.+||+|+|++|||||||+++|+.+.|...+.+|.. .+.+.+.+++..+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~------------------------- 68 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYL------------------------- 68 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEE-------------------------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEE-------------------------
Confidence 3456689999999999999999999999999988888844 44577777777666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+++|||+|++.|. ++
T Consensus 69 ------------------------------------------------------------l~i~Dt~G~~~~~-----~~ 83 (184)
T 3ihw_A 69 ------------------------------------------------------------LLIRDEGGPPELQ-----FA 83 (184)
T ss_dssp ------------------------------------------------------------EEEEECSSSCCHH-----HH
T ss_pred ------------------------------------------------------------EEEEECCCChhhh-----ee
Confidence 9999999999887 78
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+++|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+...
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~---------------------------- 134 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAA---------------------------- 134 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTT----------------------------
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc----------------------------
Confidence 899999999999999999999999999887531 246888888888888531
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD- 323 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~- 323 (373)
..+.++.++++.++...+
T Consensus 135 -------------------------------------------------------------~~~~v~~~~~~~~~~~~~~ 153 (184)
T 3ihw_A 135 -------------------------------------------------------------NPRVIDDSRARKLSTDLKR 153 (184)
T ss_dssp -------------------------------------------------------------BCCCSCHHHHHHHHHHTTT
T ss_pred -------------------------------------------------------------cccccCHHHHHHHHHHcCC
Confidence 112234556677777776
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||||++|.||+++|+.+++.+.
T Consensus 154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 154 CTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp CEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=224.77 Aligned_cols=177 Identities=21% Similarity=0.300 Sum_probs=145.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+|+|++|||||||+++|+.+.|...+.+|+++.+.+.+.+++..+.
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 76 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVE--------------------------- 76 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEE---------------------------
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999999999998777766666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++++
T Consensus 77 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 77 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCCHhHHHHHHHHcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHH-HHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQS-VKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~-l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+. +..|+..+.... +.+|+++||||+|+.++ ..
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~-~~-------------------------- 148 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTD-LS-------------------------- 148 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGC-HH--------------------------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccc-hh--------------------------
Confidence 999999999999999999 689999998875 68999999999999752 00
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
. ...+. ....+.++.++++.+++.+++
T Consensus 149 ------------------~----~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 149 ------------------T----LMELS------------------------------HQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp ------------------H----HHHHH------------------------------HTTCCCCCHHHHHHHHHHHTCS
T ss_pred ------------------h----hhhhc------------------------------ccccCccCHHHHHHHHHHcCCC
Confidence 0 00000 011244567788899999999
Q ss_pred eEEEeccCCCcC-HHHHHHHHHHHhhh
Q psy16673 325 QLLECSAKDNYN-IKEVFRTFLTLSQI 350 (373)
Q Consensus 325 ~~~E~SAktg~n-v~elf~~i~~~~~~ 350 (373)
+|+||||++|.| |+++|+.+++.+..
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 999999999998 99999999997643
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=223.03 Aligned_cols=180 Identities=26% Similarity=0.414 Sum_probs=144.1
Q ss_pred CcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccc
Q psy16673 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLED 83 (373)
Q Consensus 4 ~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
.|...+.+||+++|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------ 58 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVN------------------------ 58 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEE------------------------
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEE------------------------
Confidence 35567789999999999999999999999999988899988777666666666556
Q ss_pred eeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhh
Q psy16673 84 VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLS 163 (373)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~ 163 (373)
+.+|||+|++.|..++..+
T Consensus 59 -------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~ 77 (212)
T 2j0v_A 59 -------------------------------------------------------------LGLWDTAGQEDYSRLRPLS 77 (212)
T ss_dssp -------------------------------------------------------------EEEECCCCCCCCCC--CGG
T ss_pred -------------------------------------------------------------EEEEECCCcHHHHHHHHhh
Confidence 9999999999999999999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhh
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRL 242 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~ 242 (373)
++++|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. +.+...
T Consensus 78 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~~~------------------- 134 (212)
T 2j0v_A 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDD-KGYLAD------------------- 134 (212)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTC-HHHHHT-------------------
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhC-cccccc-------------------
Confidence 99999999999999999999997 7999988764 57999999999999752 110000
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
..+.++.++++.++...
T Consensus 135 ---------------------------------------------------------------~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 135 ---------------------------------------------------------------HTNVITSTQGEELRKQI 151 (212)
T ss_dssp ---------------------------------------------------------------CSSCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccCCCCHHHHHHHHHHc
Confidence 00123445667777777
Q ss_pred CC-eEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 323 DF-QLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 323 ~~-~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
++ +|+||||++|.||+++|+.+++.+...+.+
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 85 999999999999999999999976544433
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=222.67 Aligned_cols=166 Identities=28% Similarity=0.371 Sum_probs=130.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc--ccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
....+||+|+|++|||||||++||++. .|...+.++..+++.+.+.+++..+.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~------------------------- 88 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT------------------------- 88 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEE-------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeE-------------------------
Confidence 445799999999999999999999953 34555544444777787777777766
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc-hhHhHHhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ-FPAMRRLS 163 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~-~~~~~~~~ 163 (373)
+.+|||+|++. +..+...+
T Consensus 89 ------------------------------------------------------------l~~~Dt~g~~~~~~~l~~~~ 108 (211)
T 2g3y_A 89 ------------------------------------------------------------IILLDMWENKGENEWLHDHC 108 (211)
T ss_dssp ------------------------------------------------------------EEEECCTTTTHHHHHHHHCC
T ss_pred ------------------------------------------------------------EEEeecCCCcchhhhHHHHH
Confidence 89999999887 56677888
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++.++++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~---------------------------- 159 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR---------------------------- 159 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG----------------------------
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc----------------------------
Confidence 8999999999999999999999999888765421 24677888888888753
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.+..++++.++..++
T Consensus 160 ---------------------------------------------------------------~r~v~~~e~~~~a~~~~ 176 (211)
T 2g3y_A 160 ---------------------------------------------------------------CREVSVSEGRACAVVFD 176 (211)
T ss_dssp ---------------------------------------------------------------GCCSCHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------------CceEeHHHHHHHHHHcC
Confidence 22233445667777788
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||||++|.||+++|+.+++.+.
T Consensus 177 ~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 177 CKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=217.27 Aligned_cols=167 Identities=24% Similarity=0.412 Sum_probs=140.8
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+++|++|||||||+++|+.+.|...+.+++++.+.+.+.+++..+.
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 55 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYH-------------------------- 55 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE--------------------------
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEE--------------------------
Confidence 345689999999999999999999999999999999988766777777776666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..+...+++
T Consensus 56 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 76 (181)
T 3t5g_A 56 -----------------------------------------------------------LQLVDTAGQDEYSIFPQTYSI 76 (181)
T ss_dssp -----------------------------------------------------------EEEEECCCCCTTCCCCGGGTT
T ss_pred -----------------------------------------------------------EEEEeCCCchhhhHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
++|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~------------------------------ 125 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM------------------------------ 125 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT------------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh------------------------------
Confidence 99999999999999999999999998876542 24677888888888753
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++.++++
T Consensus 126 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 144 (181)
T 3t5g_A 126 -------------------------------------------------------------ERVISYEEGKALAESWNAA 144 (181)
T ss_dssp -------------------------------------------------------------TCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------cceecHHHHHHHHHHhCCc
Confidence 2233455677788888999
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+||||++|.||+++|+.+++.+.
T Consensus 145 ~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 145 FLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp EEECCTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=218.54 Aligned_cols=166 Identities=23% Similarity=0.294 Sum_probs=131.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
.....+||+|+|++|||||||+++|++..+...+.+++. +++.+.+.+++..+.
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 73 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT------------------------- 73 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEE-------------------------
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEE-------------------------
Confidence 345679999999999999999999986555433444444 666677777766666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLS 163 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~ 163 (373)
+.+|||+|++.+.. ++..+
T Consensus 74 ------------------------------------------------------------l~i~Dt~g~~~~~~~~~~~~ 93 (195)
T 3cbq_A 74 ------------------------------------------------------------LVVYDIWEQGDAGGWLRDHC 93 (195)
T ss_dssp ------------------------------------------------------------EEEECCCCCSGGGHHHHHHH
T ss_pred ------------------------------------------------------------EEEEecCCCccchhhhHHHh
Confidence 99999999998875 88889
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++.+|++++|||++++.+|+.+..|+.++..... ...+|+++||||+|+.+
T Consensus 94 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~---------------------------- 144 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR---------------------------- 144 (195)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT----------------------------
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc----------------------------
Confidence 9999999999999999999999999998876542 13678888888888764
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.++.++++.++...+
T Consensus 145 ---------------------------------------------------------------~~~v~~~~~~~~a~~~~ 161 (195)
T 3cbq_A 145 ---------------------------------------------------------------SREVSLEEGRHLAGTLS 161 (195)
T ss_dssp ---------------------------------------------------------------TCCSCHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------cCCcCHHHHHHHHHHhC
Confidence 12233445667777788
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||||++|.||+++|+.+++.+
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999865
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=217.63 Aligned_cols=166 Identities=28% Similarity=0.386 Sum_probs=133.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+++|++|||||||+++|+++.|...+.+|+++.+...+.+++..+.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 70 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVH-------------------------- 70 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE--------------------------
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEE--------------------------
Confidence 455689999999999999999999999999999999998766666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++|||+|++.|..+ ..+++
T Consensus 71 -----------------------------------------------------------l~i~Dt~G~~~~~~~-~~~~~ 90 (187)
T 3c5c_A 71 -----------------------------------------------------------LRVMDTADLDTPRNC-ERYLN 90 (187)
T ss_dssp -----------------------------------------------------------EEEEECCC---CCCT-HHHHT
T ss_pred -----------------------------------------------------------EEEEECCCCCcchhH-HHHHh
Confidence 999999999998876 56899
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+..|+..+..... ....+|+++||||+|+.+
T Consensus 91 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~----------------------------- 141 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ----------------------------- 141 (187)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-----------------------------
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-----------------------------
Confidence 99999999999999999999999999887641 114677777777777753
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.++.++++.+++..++
T Consensus 142 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 142 --------------------------------------------------------------YRQVTKAEGVALAGRFGC 159 (187)
T ss_dssp --------------------------------------------------------------GCSSCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------cCccCHHHHHHHHHHcCC
Confidence 223345566777888899
Q ss_pred eEEEecc-CCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSA-KDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SA-ktg~nv~elf~~i~~~~ 348 (373)
+|+|||| ++|.||+++|+.+++.+
T Consensus 160 ~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 160 LFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp EEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred cEEEEeecCccccHHHHHHHHHHHH
Confidence 9999999 89999999999999854
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=217.90 Aligned_cols=164 Identities=29% Similarity=0.448 Sum_probs=131.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 79 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK-------------------------- 79 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEE--------------------------
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEE--------------------------
Confidence 44579999999999999999999999999888888887 666677777666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|+++|..++..+++
T Consensus 80 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 80 -----------------------------------------------------------LQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp -----------------------------------------------------------EEEECCTTCGGGHHHHHHHHT
T ss_pred -----------------------------------------------------------EEEEECCCcHhHHHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~------------------------------ 148 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE------------------------------ 148 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG------------------------------
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc------------------------------
Confidence 99999999999999999999999999887642 5688888888888764
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
.+.+..++++.++...++
T Consensus 149 -------------------------------------------------------------~~~v~~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 149 -------------------------------------------------------------LREVSLAEAQSLAEHYDIL 167 (201)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCS
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCC
Confidence 122233455667777888
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.|++.+
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999865
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=216.98 Aligned_cols=166 Identities=22% Similarity=0.318 Sum_probs=141.2
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+++|++|||||||+++|+++.|...+.+|+++.+...+.+++..+.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 72 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-------------------------- 72 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEE--------------------------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEE--------------------------
Confidence 345679999999999999999999999999988999998777776777766666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 73 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 73 -----------------------------------------------------------LHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCcHHHHHHhHhhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+.++ .
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~-------------------------- 143 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKD-G-------------------------- 143 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCT-T--------------------------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC-C--------------------------
Confidence 99999999999999999998 67998888664 57899999999998741 0
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.+++..++
T Consensus 144 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 144 --------------------------------------------------------------SDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp --------------------------------------------------------------TTCCCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------CCcccHHHHHHHHHhcCC
Confidence 112344566777777888
Q ss_pred e-EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 Q-LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~-~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+ |+||||++|.||+++|+.+++.+
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHH
Confidence 8 99999999999999999999965
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=213.02 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=136.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecc-eEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGA-VTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+|++ +++.+.+.+++ ..+.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~------------------------- 57 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVT------------------------- 57 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEE-------------------------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEE-------------------------
Confidence 45679999999999999999999999999888888886 67777776655 3445
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 58 ------------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~ 77 (178)
T 2hxs_A 58 ------------------------------------------------------------LQIWDIGGQTIGGKMLDKYI 77 (178)
T ss_dssp ------------------------------------------------------------EEEEECTTCCTTCTTHHHHH
T ss_pred ------------------------------------------------------------EEEEECCCCccccchhhHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
.++|++++|||++++.+|+.+..|+..+..........| +++||||+|+.+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~---------------------------- 129 (178)
T 2hxs_A 78 YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH---------------------------- 129 (178)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG----------------------------
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc----------------------------
Confidence 999999999999999999999999998887542212333 677777777753
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.++.++++.+++..+
T Consensus 130 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 130 ---------------------------------------------------------------MRTIKPEKHLRFCQENG 146 (178)
T ss_dssp ---------------------------------------------------------------GCSSCHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------------ccccCHHHHHHHHHHcC
Confidence 22233445666777778
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|++|||++|.||+++|+.+++.+
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 147 FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999854
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=211.77 Aligned_cols=165 Identities=28% Similarity=0.470 Sum_probs=141.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+++.+.+.+....++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 67 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI--------------------------- 67 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEE---------------------------
Confidence 45689999999999999999999999999999999988666777777777666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++++
T Consensus 68 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 68 ----------------------------------------------------------LDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp ----------------------------------------------------------EEEEECCSCGGGCSSHHHHHHH
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+.+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~------------------------------- 137 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH------------------------------- 137 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST-------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh-------------------------------
Confidence 9999999999999999999999998876542 25678888888888754
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 138 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 157 (183)
T 3kkq_A 138 ------------------------------------------------------------LRKVTRDQGKEMATKYNIPY 157 (183)
T ss_dssp ------------------------------------------------------------TCCSCHHHHHHHHHHHTCCE
T ss_pred ------------------------------------------------------------ccCcCHHHHHHHHHHhCCeE
Confidence 22234456677777888999
Q ss_pred EEeccC-CCcCHHHHHHHHHHHh
Q psy16673 327 LECSAK-DNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAk-tg~nv~elf~~i~~~~ 348 (373)
++|||+ +|.||+++|+.+++.+
T Consensus 158 ~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 158 IETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHHHH
Confidence 999999 9999999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=209.15 Aligned_cols=167 Identities=31% Similarity=0.510 Sum_probs=139.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+++.|...+.+|+++.+.+.+.+++..+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 58 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPAR--------------------------- 58 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEE---------------------------
Confidence 45679999999999999999999999999988889888666666666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|+++|..++..++..
T Consensus 59 ----------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 59 ----------------------------------------------------------LDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp ----------------------------------------------------------EEEEECCCTTTTSCCHHHHHHH
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhh
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+..... ...+|+++||||+|+.+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~------------------------------- 128 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES------------------------------- 128 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG-------------------------------
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc-------------------------------
Confidence 9999999999999999999999988855432 24678888888888764
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 129 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 148 (181)
T 2fn4_A 129 ------------------------------------------------------------QRQVPRSEASAFGASHHVAY 148 (181)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCEE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCeE
Confidence 11223345566677778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|||++|.||+++|+.|++.+..
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987643
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=216.58 Aligned_cols=164 Identities=27% Similarity=0.469 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+.+.|...+.+|++ +++.+.+.+++..+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 76 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK--------------------------- 76 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEE---------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEE---------------------------
Confidence 3468999999999999999999999999888888887 666777777776666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..+...+++.
T Consensus 77 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 77 ----------------------------------------------------------LQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGHHHHGGGSTT
T ss_pred ----------------------------------------------------------EEEEECCCcHHHHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~------------------------------- 145 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE------------------------------- 145 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG-------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc-------------------------------
Confidence 9999999999999999999999999887642 4678888888888764
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.+++..+++|
T Consensus 146 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 165 (201)
T 2ew1_A 146 ------------------------------------------------------------RREVSQQRAEEFSEAQDMYY 165 (201)
T ss_dssp ------------------------------------------------------------GCSSCHHHHHHHHHHHTCCE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCEE
Confidence 11223344556667778899
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+||||++|.||+++|+.+++.+.
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 166 LETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=213.05 Aligned_cols=169 Identities=31% Similarity=0.478 Sum_probs=141.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 66 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK--------------------------- 66 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEE---------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEE---------------------------
Confidence 3468999999999999999999999999888888877 666677777766666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 67 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 67 ----------------------------------------------------------LQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGCTTHHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCcHhhhhhHHHHHhh
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+.
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~------------------------------ 136 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK------------------------------ 136 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccc------------------------------
Confidence 9999999999999999999999999987643 47888888888887641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.++...+++|
T Consensus 137 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 137 -------------------------------------------------------------KVVDYTTAKEFADSLGIPF 155 (196)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCCE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCcE
Confidence 1223345667778889999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
++|||++|.||+++|+.+++.+......
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999976554433
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=212.96 Aligned_cols=169 Identities=28% Similarity=0.506 Sum_probs=140.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++|+++.+...+.+++.+.+...+.+++..+.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 53 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL---------------------------- 53 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEE----------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEE----------------------------
Confidence 4579999999999999999999999999888888888777777777777666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..++..+
T Consensus 54 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 76 (189)
T 4dsu_A 54 ---------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTG 76 (189)
T ss_dssp ---------------------------------------------------------EEEEECCCC---CTTHHHHHHHC
T ss_pred ---------------------------------------------------------EEEEECCCcHHHHHHHHHHHhcC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+...
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~------------------------------- 124 (189)
T 4dsu_A 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR------------------------------- 124 (189)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC-------------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc-------------------------------
Confidence 999999999999999999999999887652 257899999999998631
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+..+..+.++...+++|+
T Consensus 125 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 125 -------------------------------------------------------------TVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp -------------------------------------------------------------SSCHHHHHHHHHHHTCCEE
T ss_pred -------------------------------------------------------------ccCHHHHHHHHHHcCCeEE
Confidence 1122345566677788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
+|||++|.|++++|+.+++.+...+.+
T Consensus 144 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 144 ETSAKTRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999977555444
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=206.04 Aligned_cols=120 Identities=34% Similarity=0.633 Sum_probs=104.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+++.|...+.+|+++.+.+.+.+++..+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCM------------------------------ 52 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEE------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEE------------------------------
Confidence 58999999999999999999999999888888888666666655555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|..++..++.++|+
T Consensus 53 -------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~d~ 77 (167)
T 1c1y_A 53 -------------------------------------------------------LEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp -------------------------------------------------------EEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEEECCChHHHHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 9999999999999999999998887642 25788888888888864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=245.87 Aligned_cols=193 Identities=17% Similarity=0.124 Sum_probs=134.4
Q ss_pred eeeecccccc--------chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDL--------QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~--------~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+|++ .+......++..+|++++|+|+.+..++.. .|+..+... ...|+++|+||+|+...
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~----~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR----TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT----CCSCEEEEEECCCC---
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH----cCCCEEEEEECccCccc
Confidence 8999999986 566777888999999999999988766654 233332221 47899999999998530
Q ss_pred c------------------------------------------------------------------------cc-----
Q psy16673 217 H------------------------------------------------------------------------RA----- 219 (373)
Q Consensus 217 ~------------------------------------------------------------------------r~----- 219 (373)
. +.
T Consensus 127 ~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~ 206 (436)
T 2hjg_A 127 RANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV 206 (436)
T ss_dssp --CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC--
T ss_pred hhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCC
Confidence 0 00
Q ss_pred -------------cccccceeeeccCC----------CCCchhhhh-ccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 220 -------------VHLEDVDILDTCGD----------LQFPAMRRL-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 220 -------------~~~~~~~~~dtag~----------~~~~~~~~~-s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
.....+.++||+|+ ++|..++.. +++.++++++|+|++++.++++. .|...+...
T Consensus 207 ~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~ 285 (436)
T 2hjg_A 207 AGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA 285 (436)
T ss_dssp -------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT
T ss_pred CCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc
Confidence 00011578899987 556566654 78899999999999999999886 355555431
Q ss_pred ccCCCCCchhhccccccceeeeeccccccccchhhhh-----hHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-----YFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 276 ~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~-----~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+.++++|+||||+.+.+.++. +..+.++...++++++|||++|.||+++|+.+.+.+..
T Consensus 286 ----------------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 286 ----------------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ----------------TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ----------------CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 234569999999977655432 23344555568999999999999999999999998876
Q ss_pred hccCCCcccc
Q psy16673 351 LTTNGDENSL 360 (373)
Q Consensus 351 ~~~~~~~~~~ 360 (373)
..++..+..+
T Consensus 350 ~~~~~~t~~l 359 (436)
T 2hjg_A 350 HSLRVQTNVL 359 (436)
T ss_dssp HTCCCCHHHH
T ss_pred hhcCCCHHHH
Confidence 6655554443
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=209.07 Aligned_cols=167 Identities=27% Similarity=0.423 Sum_probs=137.4
Q ss_pred CcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccc
Q psy16673 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82 (373)
Q Consensus 4 ~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (373)
.......+||+++|++|||||||+++|+.+.+...+.++++ ++..+.+.+++..+.
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 62 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK----------------------- 62 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEE-----------------------
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEE-----------------------
Confidence 33456689999999999999999999999999888777777 555666666665555
Q ss_pred ceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHh
Q psy16673 83 DVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRL 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~ 162 (373)
+.+||++|++.|..++..
T Consensus 63 --------------------------------------------------------------~~i~Dt~G~~~~~~~~~~ 80 (181)
T 2efe_B 63 --------------------------------------------------------------FEIWDTAGQERYHSLAPM 80 (181)
T ss_dssp --------------------------------------------------------------EEEEECCCSGGGGGGTHH
T ss_pred --------------------------------------------------------------EEEEeCCCChhhhhhhHH
Confidence 999999999999999999
Q ss_pred hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhh
Q psy16673 163 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRL 242 (373)
Q Consensus 163 ~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~ 242 (373)
+++.+|++++|||++++.+|+.+..|+..+..... +.+|+++|+||+|+.+.
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~-------------------------- 132 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDA-------------------------- 132 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT--------------------------
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCccccc--------------------------
Confidence 99999999999999999999999999999887642 57888899999988641
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
+.+..++.+.+++..
T Consensus 133 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 147 (181)
T 2efe_B 133 -----------------------------------------------------------------RKVTAEDAQTYAQEN 147 (181)
T ss_dssp -----------------------------------------------------------------CCSCHHHHHHHHHHT
T ss_pred -----------------------------------------------------------------ccCCHHHHHHHHHHc
Confidence 112233455666777
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++|++|||++|.||+++|+.|++.+
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999854
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=212.90 Aligned_cols=175 Identities=26% Similarity=0.454 Sum_probs=126.9
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+++|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------- 57 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVN------------------------- 57 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC--------------------------------
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEE-------------------------
Confidence 4566789999999999999999999999999888888888666555555554444
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+++|||+|+++|..++..++
T Consensus 58 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 77 (182)
T 3bwd_D 58 ------------------------------------------------------------LGLWDTAGQEDYNRLRPLSY 77 (182)
T ss_dssp ------------------------------------------------------------CEEECCCC-CTTTTTGGGGG
T ss_pred ------------------------------------------------------------EEEEECCCChhhhhhHHhhc
Confidence 89999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
+++|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. +....
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~~--------------------- 132 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDD-KQFFI--------------------- 132 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTC-HHHHH---------------------
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcC-ccccc---------------------
Confidence 9999999999999999999997 6999888764 57999999999999752 11000
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
. ....+.++.++++.+++..+
T Consensus 133 ------------------------------~-----------------------------~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 133 ------------------------------D-----------------------------HPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp ------------------------------H-----------------------------C--CCCCCHHHHHHHHHHHT
T ss_pred ------------------------------c-----------------------------cccCCCCCHHHHHHHHHHcC
Confidence 0 00012234556777888788
Q ss_pred C-eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 F-QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~-~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+ +|+||||++|.||+++|+.+++.+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6 999999999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=207.16 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|++..+...+.++.. +.+.+.+.+++..+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 52 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVT----------------------------- 52 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEE-----------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEE-----------------------------
Confidence 47999999999999999999997776655544444 666677777776666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhhhhhc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLSIATA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~~~~~ 167 (373)
+.+||++|++.+.. ++..++.++
T Consensus 53 --------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~ 76 (169)
T 3q85_A 53 --------------------------------------------------------LIVYDIWEQGDAGGWLQDHCLQTG 76 (169)
T ss_dssp --------------------------------------------------------EEEECCCCC--------CHHHHHC
T ss_pred --------------------------------------------------------EEEEECCCccccchhhhhhhhccC
Confidence 99999999999876 778889999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+..... ..++|+++||||+|+.+
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~-------------------------------- 123 (169)
T 3q85_A 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR-------------------------------- 123 (169)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG--------------------------------
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh--------------------------------
Confidence 999999999999999999999998887642 13678888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.+++..+++|+
T Consensus 124 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 124 -----------------------------------------------------------SREVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEE
T ss_pred -----------------------------------------------------------cccCCHHHHHHHHHHcCCcEE
Confidence 222345566778888899999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~ 350 (373)
||||++|.|++++|+.+++.+..
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999986543
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=208.06 Aligned_cols=164 Identities=26% Similarity=0.403 Sum_probs=130.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 56 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN-------------------------- 56 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEE--------------------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEE--------------------------
Confidence 35679999999999999999999999999888888887 555566666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..+...++.
T Consensus 57 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z08_A 57 -----------------------------------------------------------LAIWDTAGQERFHALGPIYYR 77 (170)
T ss_dssp -----------------------------------------------------------EEEEECCCC-------CCSST
T ss_pred -----------------------------------------------------------EEEEECCCcHhhhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~------------------------------ 125 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEK------------------------------ 125 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGG------------------------------
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc------------------------------
Confidence 99999999999999999999999998877642 4678888888888764
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++..+++
T Consensus 126 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 144 (170)
T 1z08_A 126 -------------------------------------------------------------ERHVSIQEAESYAESVGAK 144 (170)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCe
Confidence 1222334556677778899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.|++++|+.+++.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999854
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=206.14 Aligned_cols=164 Identities=26% Similarity=0.433 Sum_probs=135.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+.+.+||+++|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 56 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK-------------------------- 56 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEE--------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEE--------------------------
Confidence 34579999999999999999999999998887777776 445556666655555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..++.
T Consensus 57 -----------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~ 77 (170)
T 1r2q_A 57 -----------------------------------------------------------FEIWDTAGQERYHSLAPMYYR 77 (170)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGGGGHHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHhhhhhHHhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+..... +.+|+++||||+|+.+.
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~----------------------------- 126 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANK----------------------------- 126 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG-----------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccc-----------------------------
Confidence 99999999999999999999999998887642 57888888999988641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 127 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 144 (170)
T 1r2q_A 127 --------------------------------------------------------------RAVDFQEAQSYADDNSLL 144 (170)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHTTCE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 112233455566677899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.|++++|+.|++.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999843
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=213.36 Aligned_cols=175 Identities=22% Similarity=0.387 Sum_probs=141.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.+|+.+.+++.+.+++..+.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 56 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE--------------------------- 56 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEE---------------------------
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEE---------------------------
Confidence 45689999999999999999999999999988889988666666666655555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++.+
T Consensus 57 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 78 (184)
T 1m7b_A 57 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPD 78 (184)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCChhhhhhHHhhcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+.++..
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~--------------------------- 128 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVS--------------------------- 128 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHH---------------------------
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchh---------------------------
Confidence 9999999999999999999 67999888765 5799999999999975200
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-C
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-F 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~ 324 (373)
...++.. ...+.++.++++.+++..+ +
T Consensus 129 ----------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~ 156 (184)
T 1m7b_A 129 ----------------------TLVELSN------------------------------HRQTPVSYDQGANMAKQIGAA 156 (184)
T ss_dssp ----------------------HHHHHHT------------------------------TTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------hHhhhhh------------------------------cccCCCCHHHHHHHHHHcCCc
Confidence 0001110 0123345667788888777 7
Q ss_pred eEEEeccC-CCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAK-DNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAk-tg~nv~elf~~i~~~~ 348 (373)
+|+||||+ +|.||+++|+.+++.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHH
Confidence 99999999 6899999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=205.08 Aligned_cols=162 Identities=31% Similarity=0.549 Sum_probs=137.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSV------------------------------ 52 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEE------------------------------
Confidence 58999999999999999999999999888888888776777777666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..++..++..+++
T Consensus 53 -------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~~~ 77 (167)
T 1kao_A 53 -------------------------------------------------------LEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp -------------------------------------------------------EEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEEECCCchhhHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+++.+..|+..+..... ...+|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~---------------------------------- 122 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES---------------------------------- 122 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG----------------------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc----------------------------------
Confidence 9999999999999999999998877642 24688888888888754
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.++...+++|++|
T Consensus 123 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 123 ---------------------------------------------------------EREVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHHTSCEEEE
T ss_pred ---------------------------------------------------------cccCCHHHHHHHHHHhCCCEEEe
Confidence 11223334556666778899999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.|++++|+.+++.+
T Consensus 146 Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 146 SAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999854
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=206.84 Aligned_cols=164 Identities=38% Similarity=0.603 Sum_probs=134.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+++|++|||||||+++|+++.|...+.+++...+...+..++..+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 52 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICT----------------------------- 52 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEE-----------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEE-----------------------------
Confidence 468999999999999999999999988888888877655555555555445
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|++.|..+...++..+|
T Consensus 53 --------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~~~ 76 (172)
T 2erx_A 53 --------------------------------------------------------LQITDTTGSHQFPAMQRLSISKGH 76 (172)
T ss_dssp --------------------------------------------------------EEEEECCSCSSCHHHHHHHHHHCS
T ss_pred --------------------------------------------------------EEEEECCCchhhHHHHHHhcccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+++.+..|+..+.+.....+.+|+++|+||+|+...
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~-------------------------------- 124 (172)
T 2erx_A 77 AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS-------------------------------- 124 (172)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--------------------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--------------------------------
Confidence 999999999999999999999888877543457888888888888641
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.+...+++.++..++++|++
T Consensus 125 -----------------------------------------------------------~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 125 -----------------------------------------------------------REVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp -----------------------------------------------------------CCSCHHHHHHHHHHHTCEEEE
T ss_pred -----------------------------------------------------------cccCHHHHHHHHHHhCCeEEE
Confidence 112233445566677889999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.|++++|+.+++.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTC
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=214.88 Aligned_cols=164 Identities=27% Similarity=0.453 Sum_probs=109.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 58 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK--------------------------- 58 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEE---------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEE---------------------------
Confidence 4579999999999999999999999988888888887 555666666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++++
T Consensus 59 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 59 ----------------------------------------------------------LQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp ----------------------------------------------------------EEEEEC---------CCTTTTT
T ss_pred ----------------------------------------------------------EEEEcCCCChhhhhhHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+.
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~------------------------------ 128 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDK------------------------------ 128 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSC------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCcc------------------------------
Confidence 9999999999999999999999999887632 57888999999998641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.++.++++.+++..+++|
T Consensus 129 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 129 -------------------------------------------------------------RQVSKERGEKLALDYGIKF 147 (183)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHHTCEE
T ss_pred -------------------------------------------------------------CcCCHHHHHHHHHHcCCeE
Confidence 1122344556667778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.+++.+.
T Consensus 148 ~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 148 METSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp EECCC---CCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=207.91 Aligned_cols=165 Identities=24% Similarity=0.319 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+++.+...+.++..+++.+.+.+++..+.
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 53 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTT---------------------------- 53 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEE----------------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEE----------------------------
Confidence 3568999999999999999999998887655443333556666666666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc--hhHhHHhhhh
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ--FPAMRRLSIA 165 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~--~~~~~~~~~~ 165 (373)
+.+||++|++. +..+...+++
T Consensus 54 ---------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~ 76 (175)
T 2nzj_A 54 ---------------------------------------------------------LVVVDTWEAEKLDKSWSQESCLQ 76 (175)
T ss_dssp ---------------------------------------------------------EEEECCC-------CHHHHHTTT
T ss_pred ---------------------------------------------------------EEEEecCCCCccchhhhHHhhcc
Confidence 99999999988 6778888899
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.++++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+.+.
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~----------------------------- 126 (175)
T 2nzj_A 77 GGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC----------------------------- 126 (175)
T ss_dssp SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT-----------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc-----------------------------
Confidence 99999999999999999999999988876531 246788888888887641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 127 --------------------------------------------------------------~~v~~~~~~~~~~~~~~~ 144 (175)
T 2nzj_A 127 --------------------------------------------------------------REVSVEEGRACAVVFDCK 144 (175)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTSE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 122333455666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.+++.+.
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=211.53 Aligned_cols=165 Identities=27% Similarity=0.371 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc--ccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+||+++|++|||||||+++|++. .|...+.++..+++.+.+.+++..+.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESAT-------------------------- 57 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEE--------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEE--------------------------
Confidence 45689999999999999999999953 44555544444777777777777666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc-hhHhHHhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ-FPAMRRLSI 164 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~-~~~~~~~~~ 164 (373)
+.+|||+|++. +..+...++
T Consensus 58 -----------------------------------------------------------l~~~Dt~~~~~~~~~~~~~~~ 78 (192)
T 2cjw_A 58 -----------------------------------------------------------IILLDMWENKGENEWLHDHCM 78 (192)
T ss_dssp -----------------------------------------------------------EEEECCCCC----CTTGGGHH
T ss_pred -----------------------------------------------------------EEEEEeccCcchhhhHHHhhc
Confidence 88999999876 556778889
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+.++++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~----------------------------- 128 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR----------------------------- 128 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGG-----------------------------
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhc-----------------------------
Confidence 999999999999999999999999988876532 24678888888888753
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.++...++
T Consensus 129 --------------------------------------------------------------~r~v~~~~~~~~a~~~~~ 146 (192)
T 2cjw_A 129 --------------------------------------------------------------XREVSVSEGRAXAVVFDX 146 (192)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHTTC
T ss_pred --------------------------------------------------------------cccccHHHHHHHHHHhCC
Confidence 122233456667777889
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||||++|.||+++|+.+++.+.
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=213.59 Aligned_cols=175 Identities=23% Similarity=0.394 Sum_probs=144.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 67 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL--------------------------- 67 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEE---------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999988899988777666666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|+++|..++..++++
T Consensus 68 ----------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 68 ----------------------------------------------------------LGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp ----------------------------------------------------------EEEECCCCSSSSTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCCcchhHHHHHhcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+.. .
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~-------------------------- 139 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDP-K-------------------------- 139 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCH-H--------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccc-c--------------------------
Confidence 99999999999999999997 7999988764 589999999999997520 0
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
..+.+. ....+.+..++++.+++..++
T Consensus 140 ----------------------~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 140 ----------------------TLARLN------------------------------DMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp ----------------------HHHHHT------------------------------TTTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------chhhcc------------------------------cccCcccCHHHHHHHHHHcCCc
Confidence 000000 011234556677888888887
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.+++.+
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=217.36 Aligned_cols=169 Identities=26% Similarity=0.432 Sum_probs=134.2
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+|+|++|||||||+++|+++.|...+.+++++.+...+.+++..+.
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------- 73 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFH------------------------- 73 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEE-------------------------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEE-------------------------
Confidence 4556789999999999999999999999999988888888665665555555555
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 74 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 93 (201)
T 3oes_A 74 ------------------------------------------------------------LHLVDTAGQDEYSILPYSFI 93 (201)
T ss_dssp ------------------------------------------------------------EEEEEECCCCTTCCCCGGGT
T ss_pred ------------------------------------------------------------EEEEECCCccchHHHHHHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~----------------------------- 143 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP----------------------------- 143 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG-----------------------------
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc-----------------------------
Confidence 999999999999999999999999998876532 24567777777777653
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+...+++.++...++
T Consensus 144 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 144 --------------------------------------------------------------EREVQAVEGKKLAESWGA 161 (201)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHhCC
Confidence 223344566777888899
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|++|||++|.||+++|+.|++.+..
T Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 162 TFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999996543
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=211.19 Aligned_cols=166 Identities=28% Similarity=0.412 Sum_probs=134.5
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 71 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIK------------------------- 71 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEE-------------------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEE-------------------------
Confidence 345589999999999999999999999999888878777 555566666666566
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..++..++
T Consensus 72 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 72 ------------------------------------------------------------LQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp ------------------------------------------------------------EEEECCTTGGGTSCCCHHHH
T ss_pred ------------------------------------------------------------EEEEECCCchhhhhhHHHHh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+++|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~----------------------------- 140 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES----------------------------- 140 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG-----------------------------
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC-----------------------------
Confidence 999999999999999999999999999887642 5678888888888754
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.++...++
T Consensus 141 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 141 --------------------------------------------------------------RRDVKREEGEAFAREHGL 158 (191)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHcCC
Confidence 112233455666777789
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++|||++|.||+++|+.|++.+.
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 159 IFMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=213.88 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=131.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 78 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV------------------------- 78 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEE-------------------------
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEE-------------------------
Confidence 455689999999999999999999999999888888877 556666777666666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..+...++
T Consensus 79 ------------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~ 98 (199)
T 2p5s_A 79 ------------------------------------------------------------LQLWDTAGQERFRSIAKSYF 98 (199)
T ss_dssp ------------------------------------------------------------EEEEECTTCTTCHHHHHHHH
T ss_pred ------------------------------------------------------------EEEEECCCCcchhhhHHHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+++.+..|+..+..... ..+|+++||||+|+.+...
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~-------------------------- 150 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAA-------------------------- 150 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHH--------------------------
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccc--------------------------
Confidence 999999999999999999999999998877642 4789999999999864100
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
....+.+..++++.++...++
T Consensus 151 -----------------------------------------------------------~~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 151 -----------------------------------------------------------TEGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp -----------------------------------------------------------HTTCCCCCHHHHHHHHHHHTC
T ss_pred -----------------------------------------------------------cccccccCHHHHHHHHHHcCC
Confidence 001123345566777888899
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.+++.+
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999865
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=203.02 Aligned_cols=163 Identities=27% Similarity=0.495 Sum_probs=134.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+++|++|||||||+++|+.+.|...+.++..+.+...+.+++..+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 53 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ----------------------------- 53 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE-----------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEE-----------------------------
Confidence 468999999999999999999999999888888888666666666666555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++++..++..++..+|
T Consensus 54 --------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~d 77 (168)
T 1u8z_A 54 --------------------------------------------------------IDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp --------------------------------------------------------EEEEECCC---CHHHHHHHHHHCS
T ss_pred --------------------------------------------------------EEEEECCCcchhHHHHHHHhhcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+.
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~-------------------------------- 124 (168)
T 1u8z_A 78 GFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK-------------------------------- 124 (168)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGG--------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECcccccc--------------------------------
Confidence 99999999999999999999999887652 246788888888887641
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.+..++++.++...+++|++
T Consensus 125 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 125 -----------------------------------------------------------RQVSVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp -----------------------------------------------------------CCSCHHHHHHHHHHHTCEEEE
T ss_pred -----------------------------------------------------------CccCHHHHHHHHHHcCCeEEE
Confidence 112334556666677889999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.|++++|+.+++.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=214.08 Aligned_cols=178 Identities=26% Similarity=0.417 Sum_probs=136.2
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 69 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVR-------------------------- 69 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEE--------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEE--------------------------
Confidence 456689999999999999999999999999888889988777766766666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|+++|..++..++.
T Consensus 70 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 90 (201)
T 2q3h_A 70 -----------------------------------------------------------LQLCDTAGQDEFDKLRPLCYT 90 (201)
T ss_dssp -----------------------------------------------------------EEEEECCCSTTCSSSGGGGGT
T ss_pred -----------------------------------------------------------EEEEECCCCHHHHHHhHhhcC
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+... ...
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~~------------------------ 142 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLRED-VKV------------------------ 142 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGC-HHH------------------------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhc-hhh------------------------
Confidence 999999999999999999997 6999988765 58999999999999752 000
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
...+.. ...+.+..++++.++...++
T Consensus 143 ------------------------~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 143 ------------------------LIELDK------------------------------CKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp ------------------------HHHHHT------------------------------TTCCCCCHHHHHHHHHHHTC
T ss_pred ------------------------hhhhcc------------------------------cccccCCHHHHHHHHHhcCC
Confidence 000100 01233455677788888887
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|++|||++|.||+++|+.+++.+..
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999986643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=213.74 Aligned_cols=163 Identities=25% Similarity=0.425 Sum_probs=137.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+++.|...+.++.+ ++..+.+..++..+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 73 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVK--------------------------- 73 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEE---------------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEE---------------------------
Confidence 3478999999999999999999999999888888887 555566655555445
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..+...++..
T Consensus 74 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 74 ----------------------------------------------------------LQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ----------------------------------------------------------EEEECHHHHHHCHHHHHHHHTT
T ss_pred ----------------------------------------------------------EEEEeCCChHHHHHHHHHHHcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~------------------------------- 142 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEE------------------------------- 142 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG-------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc-------------------------------
Confidence 9999999999999999999999999987642 5688888888888754
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 143 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 143 ------------------------------------------------------------ERVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHHTCEE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCeE
Confidence 12233445667777889999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.||+++|+.+++.+
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=210.31 Aligned_cols=167 Identities=27% Similarity=0.412 Sum_probs=137.4
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------- 77 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS------------------------- 77 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE-------------------------
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEE-------------------------
Confidence 4456789999999999999999999999999888889888666666666666666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++. ..++..++
T Consensus 78 ------------------------------------------------------------~~l~Dt~G~~~-~~~~~~~~ 96 (196)
T 2atv_A 78 ------------------------------------------------------------MEILDTAGQED-TIQREGHM 96 (196)
T ss_dssp ------------------------------------------------------------EEEEECCCCCC-CHHHHHHH
T ss_pred ------------------------------------------------------------EEEEECCCCCc-ccchhhhh
Confidence 99999999988 77888999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~----------------------------- 146 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH----------------------------- 146 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG-----------------------------
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc-----------------------------
Confidence 999999999999999999999999998887642 24678888888888764
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.+++..++
T Consensus 147 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 164 (196)
T 2atv_A 147 --------------------------------------------------------------SRQVSTEEGEKLATELAC 164 (196)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHHTS
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHhCC
Confidence 122233455666777789
Q ss_pred eEEEeccCCCc-CHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNY-NIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~-nv~elf~~i~~~~~ 349 (373)
+|++|||++|. ||+++|+.+++.+.
T Consensus 165 ~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 165 AFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp EEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 99999999999 99999999998653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=206.53 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=111.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|++..+. ...++.+..+.+.+.+++..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEAS------------------------------ 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEE------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEE------------------------------
Confidence 589999999999999999999865543 3344555555555666666555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|..++..+++.+|+
T Consensus 51 -------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~~ 75 (166)
T 3q72_A 51 -------------------------------------------------------LMVYDIWEQDGGRWLPGHCMAMGDA 75 (166)
T ss_dssp -------------------------------------------------------EEEEECC---------------CCE
T ss_pred -------------------------------------------------------EEEEECCCCccchhhhhhhhhhCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+..... ..++|+++||||+|+.+
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~---------------------------------- 120 (166)
T 3q72_A 76 YVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR---------------------------------- 120 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCS----------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccc----------------------------------
Confidence 9999999999999999999998876531 25678888888888764
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.++...+++|++|
T Consensus 121 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 121 ---------------------------------------------------------SREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp ---------------------------------------------------------SCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ---------------------------------------------------------ccccCHHHHHHHHHHhCCcEEEe
Confidence 12234455677778889999999
Q ss_pred ccCCCcCHHHHHHHHHHHhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~ 349 (373)
||++|.||+++|+.+++.+.
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=210.83 Aligned_cols=165 Identities=25% Similarity=0.401 Sum_probs=135.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+|+|++|||||||+++|+++.|...+.++.+ ++..+.+.+++..+.
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 73 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK------------------------- 73 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEE-------------------------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEE-------------------------
Confidence 345689999999999999999999999998877888877 444455555544444
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 74 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 93 (192)
T 2fg5_A 74 ------------------------------------------------------------FLIWDTAGQERFHSLAPMYY 93 (192)
T ss_dssp ------------------------------------------------------------EEEEEECCSGGGGGGTHHHH
T ss_pred ------------------------------------------------------------EEEEcCCCchhhHhhhHHhh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+|+.+..|+..+.... ...+|+++|+||+|+.+
T Consensus 94 ~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~----------------------------- 142 (192)
T 2fg5_A 94 RGSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSD----------------------------- 142 (192)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGG-----------------------------
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccc-----------------------------
Confidence 99999999999999999999999999988764 24688888888888863
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.+++..++
T Consensus 143 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 160 (192)
T 2fg5_A 143 --------------------------------------------------------------IREVPLKDAKEYAESIGA 160 (192)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHTTTC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHcCC
Confidence 111233455666777889
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|++|||++|.||+++|+.|++.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=211.32 Aligned_cols=167 Identities=26% Similarity=0.481 Sum_probs=140.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+|+|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 63 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ--------------------------- 63 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEE---------------------------
Confidence 45579999999999999999999999999888888888766666666666556
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++..
T Consensus 64 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 85 (206)
T 2bov_A 64 ----------------------------------------------------------IDILDTAGQEDYAAIRDNYFRS 85 (206)
T ss_dssp ----------------------------------------------------------EEEEECCCTTCCHHHHHHHHHH
T ss_pred ----------------------------------------------------------EEEEcCCChhhhHHHHHHHHhh
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+.+.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~------------------------------ 134 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK------------------------------ 134 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGG------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCcccc------------------------------
Confidence 9999999999999999999999999887652 246888888888887641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.++...+++|
T Consensus 135 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 153 (206)
T 2bov_A 135 -------------------------------------------------------------RQVSVEEAKNRAEQWNVNY 153 (206)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHHTCEE
T ss_pred -------------------------------------------------------------ccccHHHHHHHHHHhCCeE
Confidence 1123344556666678899
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|||++|.||+++|+.+++.+..
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987644
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=205.46 Aligned_cols=164 Identities=25% Similarity=0.393 Sum_probs=137.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 65 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK-------------------------- 65 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEE--------------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEE--------------------------
Confidence 44579999999999999999999999999888888877 555666666666555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.+..++..++.
T Consensus 66 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 86 (179)
T 1z0f_A 66 -----------------------------------------------------------LQIWDTAGQERFRAVTRSYYR 86 (179)
T ss_dssp -----------------------------------------------------------EEEEECTTGGGTCHHHHHHHH
T ss_pred -----------------------------------------------------------EEEEECCCChHhhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+
T Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~------------------------------ 134 (179)
T 1z0f_A 87 GAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA------------------------------ 134 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG------------------------------
T ss_pred cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc------------------------------
Confidence 99999999999999999999999998887642 4678888888888754
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++..+++
T Consensus 135 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 153 (179)
T 1z0f_A 135 -------------------------------------------------------------QRDVTYEEAKQFAEENGLL 153 (179)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCE
Confidence 1112334556666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999854
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=209.49 Aligned_cols=168 Identities=30% Similarity=0.458 Sum_probs=138.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+++|+++.+...+.++.+ ++....+.+++..+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 59 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVK-------------------------- 59 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEE--------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEE--------------------------
Confidence 44579999999999999999999999988877777776 556666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..+...++.
T Consensus 60 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 80 (181)
T 3tw8_B 60 -----------------------------------------------------------LQIWDTAGQERFRTITSTYYR 80 (181)
T ss_dssp -----------------------------------------------------------EEEEEETTGGGCSSCCGGGGT
T ss_pred -----------------------------------------------------------EEEEcCCCchhhhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+.... +.+|+++||||+|+.+.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~----------------------------- 128 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPER----------------------------- 128 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGG-----------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchh-----------------------------
Confidence 9999999999999999999999999988764 57888888888887641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..+++..++...+++
T Consensus 129 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 129 --------------------------------------------------------------KVVETEDAYKFAGQMGIQ 146 (181)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTCC
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 112334556677777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
|++|||++|.||+++|+.+.+.+...+.
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999997654443
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=205.48 Aligned_cols=167 Identities=26% Similarity=0.481 Sum_probs=138.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 67 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ--------------------------- 67 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999888888888666666666666555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++..
T Consensus 68 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 89 (187)
T 2a9k_A 68 ----------------------------------------------------------IDILDTAGQEDYAAIRDNYFRS 89 (187)
T ss_dssp ----------------------------------------------------------EEEEECCCTTCCHHHHHHHHHH
T ss_pred ----------------------------------------------------------EEEEECCCCcccHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~------------------------------ 138 (187)
T 2a9k_A 90 GEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK------------------------------ 138 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc------------------------------
Confidence 9999999999999999999999999887752 236888888888887641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++.+.+++.++++|
T Consensus 139 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 157 (187)
T 2a9k_A 139 -------------------------------------------------------------RQVSVEEAKNRAEQWNVNY 157 (187)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------CccCHHHHHHHHHHcCCeE
Confidence 1123344566667778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|||++|.||+++|+.|++.+..
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 158 VETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999986643
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=204.09 Aligned_cols=163 Identities=29% Similarity=0.417 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.++.+ ++....+.+++..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 53 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVK----------------------------- 53 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEE-----------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 58999999999999999999999999888888877 455566666665555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.|..++..+++++|
T Consensus 54 --------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~~~d 77 (170)
T 1ek0_A 54 --------------------------------------------------------FEIWDTAGQERFASLAPXYYRNAQ 77 (170)
T ss_dssp --------------------------------------------------------EEEEEECCSGGGGGGHHHHHTTCS
T ss_pred --------------------------------------------------------EEEEECCCChhhhhhhhhhhccCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.....
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~------------------------------ 125 (170)
T 1ek0_A 78 AALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGG------------------------------ 125 (170)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSC------------------------------
T ss_pred EEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccc------------------------------
Confidence 99999999999999999999999887642 5789999999999874200
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++++.++...+++|++
T Consensus 126 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 126 ----------------------------------------------------------ERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp ----------------------------------------------------------CCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------ccCCCHHHHHHHHHHcCCEEEE
Confidence 0122344556677778899999
Q ss_pred eccCCCcCHHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~ 347 (373)
|||++|.|++++|+.+++.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999874
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=206.65 Aligned_cols=164 Identities=27% Similarity=0.443 Sum_probs=137.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 60 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK--------------------------- 60 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEE---------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEE---------------------------
Confidence 4579999999999999999999999999888888877 556666666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++..
T Consensus 61 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 61 ----------------------------------------------------------LQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGHHHHHTTSTT
T ss_pred ----------------------------------------------------------EEEEeCCCcHHHHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+...
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~------------------------------ 130 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDAD------------------------------ 130 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc------------------------------
Confidence 9999999999999999999999998877642 57888888888888641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+...+++.++...+++|
T Consensus 131 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 131 -------------------------------------------------------------REVTFLEASRFAQENELMF 149 (186)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCEE
Confidence 1122334556677788999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.+++.+.
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 150 LETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=203.37 Aligned_cols=163 Identities=26% Similarity=0.368 Sum_probs=136.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+.+||+++|++|||||||+++|+++.|...+.++.+ ++..+.+.+.+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 56 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK--------------------------- 56 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEE---------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEE---------------------------
Confidence 4578999999999999999999999998888888877 455566666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..+...++.+
T Consensus 57 ----------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~ 78 (170)
T 1z0j_A 57 ----------------------------------------------------------FLIWDTAGLERFRALAPMYYRG 78 (170)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGGGGTHHHHTT
T ss_pred ----------------------------------------------------------EEEEcCCCchhhhcccHhhCcC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+.... .+.+|+++||||+|+.+.
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~~------------------------------ 126 (170)
T 1z0j_A 79 SAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTDV------------------------------ 126 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECCccccc------------------------------
Confidence 999999999999999999999999988763 257888888888888641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.++...+++|
T Consensus 127 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 127 -------------------------------------------------------------REVMERDAKDYADSIHAIF 145 (170)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCEE
Confidence 1123344566667778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.|++++|+.+++.+
T Consensus 146 ~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 146 VETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=209.64 Aligned_cols=122 Identities=25% Similarity=0.507 Sum_probs=98.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+.+++..+.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 76 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIR-------------------------- 76 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEE--------------------------
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEE--------------------------
Confidence 44578999999999999999999999988887778776 666666666666555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 77 -----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 77 -----------------------------------------------------------LQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGHHHHHHHHH
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+|++++|||++++.+++.+..|+..+..... ..+|+++||||+|+.+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 99999999999999999999999988877642 4688888888888864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=215.28 Aligned_cols=175 Identities=22% Similarity=0.387 Sum_probs=141.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.+|+.+.+++.+.+++..+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 77 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE--------------------------- 77 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEE---------------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999988889888666666665555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++.+
T Consensus 78 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 78 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEeCCCcHhhhHHHHhhccC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+.++..
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~--------------------------- 149 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVS--------------------------- 149 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHH---------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchh---------------------------
Confidence 9999999999999999999 68999988765 5799999999999974200
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-C
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-F 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~ 324 (373)
...++.. ...+.++.++++.+++..+ +
T Consensus 150 ----------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 150 ----------------------TLVELSN------------------------------HRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp ----------------------HHHHHHT------------------------------TTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------hhhhhcc------------------------------cccCCCCHHHHHHHHHHcCCC
Confidence 0001100 0123345667788888777 7
Q ss_pred eEEEeccC-CCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAK-DNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAk-tg~nv~elf~~i~~~~ 348 (373)
+|+||||+ +|.||+++|+.+++.+
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHH
Confidence 99999999 6899999999999864
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=208.07 Aligned_cols=174 Identities=25% Similarity=0.467 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 54 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN---------------------------- 54 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEE----------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEE----------------------------
Confidence 3578999999999999999999999999988889988777777777766666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..++..+
T Consensus 55 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 77 (186)
T 1mh1_A 55 ---------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQT 77 (186)
T ss_dssp ---------------------------------------------------------EEEECCCCSGGGTTTGGGGCTTC
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHhccCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. ..
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~--------------------------- 126 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KD--------------------------- 126 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTC-HH---------------------------
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEccccccc-ch---------------------------
Confidence 9999999999999999997 6999888764 48999999999999752 00
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-e
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-Q 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~ 325 (373)
..+.+.. ...+.++.++++.+++..++ +
T Consensus 127 ---------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~ 155 (186)
T 1mh1_A 127 ---------------------TIEKLKE------------------------------KKLTPITYPQGLAMAKEIGAVK 155 (186)
T ss_dssp ---------------------HHHHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSE
T ss_pred ---------------------hhhhhcc------------------------------cccccCCHHHHHHHHHhcCCcE
Confidence 0001110 01233456677888888887 9
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 156 YLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999865
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-28 Score=213.06 Aligned_cols=165 Identities=29% Similarity=0.485 Sum_probs=138.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+.+++..+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 58 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK-------------------------- 58 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEE--------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEE--------------------------
Confidence 34579999999999999999999999999888888887 555666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 59 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 59 -----------------------------------------------------------LQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp -----------------------------------------------------------EEEECCTTTTTTTCCCGGGGT
T ss_pred -----------------------------------------------------------EEEEeCCChHHHHHHHHHhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+.
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~----------------------------- 128 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDK----------------------------- 128 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT-----------------------------
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc-----------------------------
Confidence 99999999999999999999999999887642 56888888999988641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 129 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 146 (206)
T 2bcg_Y 129 --------------------------------------------------------------RVVEYDVAKEFADANKMP 146 (206)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHTTCC
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 112233455666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.+++.+.
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998664
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=208.29 Aligned_cols=164 Identities=26% Similarity=0.441 Sum_probs=135.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+..++..+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 72 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK-------------------------- 72 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEE--------------------------
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEE--------------------------
Confidence 44579999999999999999999999999887778776 444455555555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..++.
T Consensus 73 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 73 -----------------------------------------------------------LQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp -----------------------------------------------------------EEEEECCSCCSSCCSGGGGGT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHhhhHHHhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++|+||+|+.+.
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~----------------------------- 142 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDE----------------------------- 142 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGG-----------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccc-----------------------------
Confidence 9999999999999999999999999988764 246888888888888641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.+++..+++
T Consensus 143 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 160 (189)
T 2gf9_A 143 --------------------------------------------------------------RVVPAEDGRRLADDLGFE 160 (189)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTCE
T ss_pred --------------------------------------------------------------cCCCHHHHHHHHHHcCCe
Confidence 112234456667777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=214.63 Aligned_cols=175 Identities=23% Similarity=0.450 Sum_probs=124.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 83 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH---------------------------- 83 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEE----------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEE----------------------------
Confidence 4579999999999999999999999999888888887766666666666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..++.++
T Consensus 84 ---------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~~ 106 (214)
T 2j1l_A 84 ---------------------------------------------------------LHIWDTAGQDDYDRLRPLFYPDA 106 (214)
T ss_dssp ---------------------------------------------------------EEEEEC---------------CE
T ss_pred ---------------------------------------------------------EEEEECCCchhhhHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+... +..
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~-------------------------- 156 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD-KSL-------------------------- 156 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC-HHH--------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc-chh--------------------------
Confidence 9999999999999999997 6999888764 57999999999999752 100
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-e
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-Q 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~ 325 (373)
.+.+.. ...+.++.++++.+++..++ +
T Consensus 157 ----------------------~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 157 ----------------------VNKLRR------------------------------NGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp ----------------------HHHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSE
T ss_pred ----------------------hhhhcc------------------------------cccCcccHHHHHHHHHhcCCCE
Confidence 000100 01234566778888888887 9
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+||||++|.||+++|+.+++.+.
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=203.24 Aligned_cols=162 Identities=27% Similarity=0.466 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+++.+...+.++++ ++..+.+.+++..+.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 55 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVR--------------------------- 55 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEE---------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEE---------------------------
Confidence 3578999999999999999999999999888888887 666677766666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 56 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 77 (168)
T 1z2a_A 56 ----------------------------------------------------------LMLWDTAGQEEFDAITKAYYRG 77 (168)
T ss_dssp ----------------------------------------------------------EEEECCTTGGGTTCCCHHHHTT
T ss_pred ----------------------------------------------------------EEEEcCCCcHhHHHHHHHHhcC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+.... ...|+++|+||+|+.+.
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~------------------------------ 124 (168)
T 1z2a_A 78 AQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD------------------------------ 124 (168)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc------------------------------
Confidence 999999999999999999999999988765 57889999999998641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++.+.+++..+++|
T Consensus 125 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 143 (168)
T 1z2a_A 125 -------------------------------------------------------------SCIKNEEAEGLAKRLKLRF 143 (168)
T ss_dssp -------------------------------------------------------------CSSCHHHHHHHHHHHTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCeE
Confidence 1122334455666678899
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.|++++|+.+++.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999854
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=208.15 Aligned_cols=164 Identities=27% Similarity=0.419 Sum_probs=136.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++.++.+.+++..+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 75 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK-------------------------- 75 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEE--------------------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE--------------------------
Confidence 34479999999999999999999999999888888876 556666666666555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|+++|..++..++.
T Consensus 76 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 76 -----------------------------------------------------------AQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp -----------------------------------------------------------EEEEEESCCCTTCTTHHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCCchhhhhhhHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++|+||+|+...
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~----------------------------- 145 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQA----------------------------- 145 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGG-----------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccc-----------------------------
Confidence 9999999999999999999999999887653 256788888888888641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 146 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 146 --------------------------------------------------------------REVPTEEARMFAENNGLL 163 (193)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHTTCE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCE
Confidence 112234456666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.|++.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999865
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=210.89 Aligned_cols=164 Identities=27% Similarity=0.457 Sum_probs=127.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 75 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK--------------------------- 75 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEE---------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeE---------------------------
Confidence 4579999999999999999999999999888888877 566666666666566
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++..
T Consensus 76 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 76 ----------------------------------------------------------LQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp ----------------------------------------------------------EEEECCTTHHHHSCCCHHHHTT
T ss_pred ----------------------------------------------------------EEEEcCCCcHhHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+...
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~------------------------------ 145 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPE------------------------------ 145 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc------------------------------
Confidence 9999999999999999999999998877642 56888888888888541
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.++..+++.++...+++|
T Consensus 146 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 164 (200)
T 2o52_A 146 -------------------------------------------------------------REVTFLEASRFAQENELMF 164 (200)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCEE
Confidence 1122334556667788999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.+++.+.
T Consensus 165 ~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 165 LETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=209.23 Aligned_cols=168 Identities=37% Similarity=0.590 Sum_probs=138.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.++++..+...+..++..+.
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 57 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCT--------------------------- 57 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999888888877665555555555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++..
T Consensus 58 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 79 (199)
T 2gf0_A 58 ----------------------------------------------------------LQITDTTGSHQFPAMQRLSISK 79 (199)
T ss_dssp ----------------------------------------------------------EEEEECCGGGSCHHHHHHHHHH
T ss_pred ----------------------------------------------------------EEEEeCCChHHhHHHHHHhhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+.........+|+++||||+|+.. +.
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~--------------------------- 130 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--RE--------------------------- 130 (199)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CS---------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cc---------------------------
Confidence 9999999999999999999999888887654335788999999999863 11
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+..++++.++..++++|
T Consensus 131 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 147 (199)
T 2gf0_A 131 ---------------------------------------------------------------VDTREAQAVAQEWKCAF 147 (199)
T ss_dssp ---------------------------------------------------------------SCHHHHHHHHHHHTCEE
T ss_pred ---------------------------------------------------------------cCHHHHHHHHHHhCCeE
Confidence 12234455566678899
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
++|||++|.||+++|+.+++.+...
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 148 METSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEEecCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999976443
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=214.05 Aligned_cols=165 Identities=25% Similarity=0.407 Sum_probs=130.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 63 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIK-------------------------- 63 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEE--------------------------
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEE--------------------------
Confidence 35579999999999999999999999999888888887 566666776666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 64 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 84 (223)
T 3cpj_B 64 -----------------------------------------------------------AQIWDTAGQERYRAITSAYYR 84 (223)
T ss_dssp -----------------------------------------------------------EEEECCTTTTTTTCCCGGGTT
T ss_pred -----------------------------------------------------------EEEEECCCccchhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+..
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~------------------------------ 132 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAH------------------------------ 132 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGG------------------------------
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc------------------------------
Confidence 9999999999999999999999999987764 24678888888888764
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++..+++
T Consensus 133 -------------------------------------------------------------~~~v~~~~~~~~~~~~~~~ 151 (223)
T 3cpj_B 133 -------------------------------------------------------------LRAVPTEESKTFAQENQLL 151 (223)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCE
Confidence 1122334556667778899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.|++.+.
T Consensus 152 ~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 152 FTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp EEECCCC-CCCHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=208.73 Aligned_cols=165 Identities=26% Similarity=0.422 Sum_probs=137.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+..++..+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 58 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK-------------------------- 58 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEE--------------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEE--------------------------
Confidence 34579999999999999999999999999888888876 455556665555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 59 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 79 (203)
T 1zbd_A 59 -----------------------------------------------------------LQIWDTAGLERYRTITTAYYR 79 (203)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGHHHHHTTGG
T ss_pred -----------------------------------------------------------EEEEECCCchhhcchHHHhhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+.+.
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~----------------------------- 128 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDE----------------------------- 128 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTS-----------------------------
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcc-----------------------------
Confidence 9999999999999999999999999988764 246888888888888641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 129 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 146 (203)
T 1zbd_A 129 --------------------------------------------------------------RVVSSERGRQLADHLGFE 146 (203)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTCE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHCCCe
Confidence 112234456667777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.|++.+.
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=205.16 Aligned_cols=165 Identities=28% Similarity=0.472 Sum_probs=127.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccC-Cceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..+.+||+++|++|||||||+++|+.+.|. ..+.++++ ++....+.+++..+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 61 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK------------------------- 61 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEE-------------------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEE-------------------------
Confidence 456799999999999999999999998885 45667766 444445555555555
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..++..++
T Consensus 62 ------------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~ 81 (180)
T 2g6b_A 62 ------------------------------------------------------------LQMWDTAGQERFRSVTHAYY 81 (180)
T ss_dssp ------------------------------------------------------------EEEEECCCC--------CCG
T ss_pred ------------------------------------------------------------EEEEeCCCcHHHHHHHHHHc
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.++|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+...
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~---------------------------- 131 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE---------------------------- 131 (180)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC----------------------------
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcc----------------------------
Confidence 999999999999999999999999999887643 57889999999998641
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
+.+..++++.+++..++
T Consensus 132 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 148 (180)
T 2g6b_A 132 ---------------------------------------------------------------RVVKREDGEKLAKEYGL 148 (180)
T ss_dssp ---------------------------------------------------------------CCSCHHHHHHHHHHHTC
T ss_pred ---------------------------------------------------------------cccCHHHHHHHHHHcCC
Confidence 11223344556666788
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++|||++|.||+++|+.+++.+.
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 149 PFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=241.45 Aligned_cols=195 Identities=16% Similarity=0.098 Sum_probs=138.8
Q ss_pred eeeecccc--------ccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCG--------DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g--------~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+| ++.+......++..+|++++|+|..+.-+.. ..|+...... ...|+++|+||+|+...
T Consensus 73 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~----~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 73 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR----TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp CEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT----CCSCEEEEEECC-----
T ss_pred EEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH----cCCCEEEEEECccchhh
Confidence 99999999 7777888889999999999999987643332 3333333221 57899999999998640
Q ss_pred c-------------------------------------------------------------------------------
Q psy16673 217 H------------------------------------------------------------------------------- 217 (373)
Q Consensus 217 ~------------------------------------------------------------------------------- 217 (373)
.
T Consensus 147 ~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~ 226 (456)
T 4dcu_A 147 RANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV 226 (456)
T ss_dssp ----CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-
T ss_pred hhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCC
Confidence 0
Q ss_pred -----------cccccccceeeeccC----------CCCCchhhhh-ccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 218 -----------RAVHLEDVDILDTCG----------DLQFPAMRRL-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 218 -----------r~~~~~~~~~~dtag----------~~~~~~~~~~-s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
-......+.+|||+| +++|..++.. +++.++++++|+|++++.+.++. .|...+.+
T Consensus 227 ~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~-~~~~~~~~- 304 (456)
T 4dcu_A 227 AGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE- 304 (456)
T ss_dssp -----CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-
T ss_pred CCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHH-HHHHHHHH-
Confidence 000001257999999 7888888776 78999999999999986654432 34444443
Q ss_pred ccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-----CCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-----DFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 276 ~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-----~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.++| +++|+||||+...+.++.++.+..++.. +++|++|||++|.||+++|+.+.+.+..
T Consensus 305 ---~~~~------------~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 305 ---AGKA------------VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ---TTCE------------EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ---cCCC------------EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 2234 5599999999887776666555544333 6899999999999999999999998877
Q ss_pred hccCCCcccccc
Q psy16673 351 LTTNGDENSLKR 362 (373)
Q Consensus 351 ~~~~~~~~~~~~ 362 (373)
..++..+..+++
T Consensus 370 ~~~~~~t~~ln~ 381 (456)
T 4dcu_A 370 HSLRVQTNVLND 381 (456)
T ss_dssp HTCCCCHHHHHH
T ss_pred hcccCCHHHHHH
Confidence 776666555443
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=203.57 Aligned_cols=162 Identities=29% Similarity=0.533 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|...+.++++ ++....+.+++..+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 53 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK---------------------------- 53 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEE----------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEE----------------------------
Confidence 468999999999999999999999999888888877 555555555555555
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..++..+
T Consensus 54 ---------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~ 76 (170)
T 1g16_A 54 ---------------------------------------------------------LQIWDTAGQERFRTITTAYYRGA 76 (170)
T ss_dssp ---------------------------------------------------------EEEECCTTGGGTSCCCHHHHTTE
T ss_pred ---------------------------------------------------------EEEEeCCCChhhhhhHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.. +.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~--~~---------------------------- 124 (170)
T 1g16_A 77 MGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMET--RV---------------------------- 124 (170)
T ss_dssp EEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTT--CC----------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCc--Cc----------------------------
Confidence 999999999999999999999999887642 4788999999999842 11
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..++++.+++..+++|+
T Consensus 125 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 125 --------------------------------------------------------------VTADQGEALAKELGIPFI 142 (170)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHHTCCEE
T ss_pred --------------------------------------------------------------cCHHHHHHHHHHcCCeEE
Confidence 122344556666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|||++|.||+++|+.+.+.+.
T Consensus 143 ~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 143 ESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=209.02 Aligned_cols=176 Identities=25% Similarity=0.424 Sum_probs=142.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+....+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 74 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVE-------------------------- 74 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEE--------------------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEE--------------------------
Confidence 455689999999999999999999999999888888888665555666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 75 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 95 (201)
T 2gco_A 75 -----------------------------------------------------------LALWDTAGQEDYDRLRPLSYP 95 (201)
T ss_dssp -----------------------------------------------------------EEEECCCCSGGGTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCchhHHHHHHHhcC
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+... ..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~------------------------- 146 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQD-EH------------------------- 146 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTC-HH-------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcC-cc-------------------------
Confidence 99999999999999999999 67988888764 57999999999999752 00
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
..+.+... ..+.+..++++.+++..++
T Consensus 147 -----------------------~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 147 -----------------------TRRELAKM------------------------------KQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp -----------------------HHHHHHTT------------------------------TCCCCCHHHHHHHHHHTTC
T ss_pred -----------------------chhhhccc------------------------------ccCcCCHHHHHHHHHhCCC
Confidence 00011110 1123456677888888887
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|++|||++|.||+++|+.|++.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=203.38 Aligned_cols=162 Identities=27% Similarity=0.549 Sum_probs=136.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+.+||+++|++|||||||+++|+.+.|...+.++++ +++.+.+.+++..+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 64 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR---------------------------- 64 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEE----------------------------
Confidence 569999999999999999999999999888888877 666677776666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..+...++.++
T Consensus 65 ---------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~~ 87 (179)
T 2y8e_A 65 ---------------------------------------------------------LQLWDTAGQERFRSLIPSYIRDS 87 (179)
T ss_dssp ---------------------------------------------------------EEEEEECCSGGGGGGSHHHHHTC
T ss_pred ---------------------------------------------------------EEEEECCCcHHHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+.
T Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~------------------------------- 134 (179)
T 2y8e_A 88 TVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDK------------------------------- 134 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGG-------------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCccccc-------------------------------
Confidence 999999999999999999999998887642 57888888999888641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..++++.++...+++|+
T Consensus 135 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 135 ------------------------------------------------------------RQVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp ------------------------------------------------------------CCSCHHHHHHHHHHHTCEEE
T ss_pred ------------------------------------------------------------CcCCHHHHHHHHHHcCCeEE
Confidence 11223344555666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
+|||++|.|++++|+.+++.+
T Consensus 155 ~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 155 ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEBTTTTBSHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999843
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=207.35 Aligned_cols=166 Identities=27% Similarity=0.479 Sum_probs=135.4
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 70 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK------------------------- 70 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEE-------------------------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEE-------------------------
Confidence 345679999999999999999999999999888888877 666666766666566
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-HhHHhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP-AMRRLS 163 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~-~~~~~~ 163 (373)
+.+|||+|++.|. .+...+
T Consensus 71 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 90 (189)
T 1z06_A 71 ------------------------------------------------------------IQLWDTAGQERFRKSMVQHY 90 (189)
T ss_dssp ------------------------------------------------------------EEEEECCCSHHHHTTTHHHH
T ss_pred ------------------------------------------------------------EEEEECCCchhhhhhhhHHH
Confidence 9999999999998 889999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++.+|++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~---------------------------- 141 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS---------------------------- 141 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG----------------------------
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc----------------------------
Confidence 9999999999999999999999999999887641 24678888888888754
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.+..++++.++...+
T Consensus 142 ---------------------------------------------------------------~~~v~~~~~~~~~~~~~ 158 (189)
T 1z06_A 142 ---------------------------------------------------------------AIQVPTDLAQKFADTHS 158 (189)
T ss_dssp ---------------------------------------------------------------GCCSCHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------cceeCHHHHHHHHHHcC
Confidence 12223445667777788
Q ss_pred CeEEEeccCCC---cCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDN---YNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg---~nv~elf~~i~~~~ 348 (373)
++|++|||++| .||+++|+.|++.+
T Consensus 159 ~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 99999999999 99999999998743
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=211.89 Aligned_cols=175 Identities=26% Similarity=0.481 Sum_probs=141.4
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 79 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN-------------------------- 79 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEE--------------------------
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEE--------------------------
Confidence 345689999999999999999999999999999999998877777777776666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..+...++.
T Consensus 80 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 100 (204)
T 4gzl_A 80 -----------------------------------------------------------LGLWDTAGLEDYDRLRPLSYP 100 (204)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCchhhHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+. .|+..+.... ..+|+++||||+|+.+. +..
T Consensus 101 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~------------------------ 152 (204)
T 4gzl_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KDT------------------------ 152 (204)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC-HHH------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc-hhh------------------------
Confidence 999999999999999999997 7999888765 67999999999999752 100
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+.. ...+.++.+++..+++..++
T Consensus 153 ------------------------~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 153 ------------------------IEKLKE------------------------------KKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp ------------------------HHHHHH------------------------------TTCCCCCHHHHHHHHHHTTC
T ss_pred ------------------------hhhhhc------------------------------cccccccHHHHHHHHHhcCC
Confidence 001111 01123456677888888885
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||||++|.||+++|+.+++.
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHH
Confidence 69999999999999999999984
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=200.95 Aligned_cols=123 Identities=25% Similarity=0.468 Sum_probs=102.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT-------------------------- 57 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEE--------------------------
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEE--------------------------
Confidence 45679999999999999999999999999888888877 555666666666566
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..++..++.
T Consensus 58 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 78 (177)
T 1wms_A 58 -----------------------------------------------------------MQIWDTAGQERFRSLRTPFYR 78 (177)
T ss_dssp -----------------------------------------------------------EEEEECCCCGGGHHHHGGGGT
T ss_pred -----------------------------------------------------------EEEEeCCCchhhhhhHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEeccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMT 214 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~ 214 (373)
.+|++++|||++++.+++.+..|+..+...... ...+|+++||||+|+.
T Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999999999999999999999998876531 1467888888888875
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=205.64 Aligned_cols=163 Identities=24% Similarity=0.370 Sum_probs=135.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+.+||+|+|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 65 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK---------------------------- 65 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEE----------------------------
Confidence 468999999999999999999999999888888876 555566666666556
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..+++.+
T Consensus 66 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 66 ---------------------------------------------------------LAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp ---------------------------------------------------------EEEEEECSSGGGCCSHHHHHTTC
T ss_pred ---------------------------------------------------------EEEEeCCCchhhhhhhHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+++.+..|+..+..... ...+|+++|+||+|+.. +.
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~--~~---------------------------- 137 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN--RE---------------------------- 137 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS--CC----------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc--cc----------------------------
Confidence 999999999999999999999998876532 24688889999998843 11
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..+++..++...+++|+
T Consensus 138 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 138 --------------------------------------------------------------VDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHTTCEEE
T ss_pred --------------------------------------------------------------cCHHHHHHHHHHcCCEEE
Confidence 122344556667788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|||++|.||+++|+.|++.+.
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=204.98 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=136.1
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccc
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLED 83 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
|.....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+.+++........ ...
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~------~~~----------- 64 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN------NEK----------- 64 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccc------ccc-----------
Confidence 4566789999999999999999999999999888888887 5555655555433210000 000
Q ss_pred eeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhh
Q psy16673 84 VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLS 163 (373)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~ 163 (373)
.......... .-... .... .........+.+.+|||+|++.|..+...+
T Consensus 65 ------------~~~~~~~~~~---~~~~~-~~~~---------------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 113 (208)
T 3clv_A 65 ------------NNNINSINDD---NNVII-TNQH---------------NNYNENLCNIKFDIWDTAGQERYASIVPLY 113 (208)
T ss_dssp ---------------------------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHH
T ss_pred ------------cccccccccc---ccccc-cccc---------------ccccCccceeEEEEEECCCcHHHHHHHHHH
Confidence 0000000000 00000 0000 000011122459999999999999999999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
+..+|++++|||++++.+++.+..|+..+.... .+|+++|+||+|+.. +
T Consensus 114 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~NK~D~~~--~------------------------- 162 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVANKIDKNK--F------------------------- 162 (208)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEECTTCC---C-------------------------
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEECCCccc--c-------------------------
Confidence 999999999999999999999999999988764 389999999999321 1
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+..++.+.++...+
T Consensus 163 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 177 (208)
T 3clv_A 163 -----------------------------------------------------------------QVDILEVQKYAQDNN 177 (208)
T ss_dssp -----------------------------------------------------------------CSCHHHHHHHHHHTT
T ss_pred -----------------------------------------------------------------cCCHHHHHHHHHHcC
Confidence 112234455666678
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|++|||++|.||+++|+.|++.+
T Consensus 178 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 178 LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999865
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=202.62 Aligned_cols=124 Identities=27% Similarity=0.536 Sum_probs=91.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++++ +++...+.++ +..+.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 59 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT------------------------- 59 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEE-------------------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEE-------------------------
Confidence 45689999999999999999999999999888888886 6666655554 33333
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..+...++
T Consensus 60 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 60 ------------------------------------------------------------MQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp ------------------------------------------------------------EEEECCC----------CCS
T ss_pred ------------------------------------------------------------EEEEECCCChHhhhhhHHHh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|++++|||++++.+++.+..|+..+..... ....+|+++||||+|+..
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 999999999999999999999999999887652 125678888888888853
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=207.83 Aligned_cols=176 Identities=25% Similarity=0.426 Sum_probs=136.6
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+....+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 74 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVE-------------------------- 74 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEE--------------------------
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEE--------------------------
Confidence 345578999999999999999999999999888888888665555666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 75 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 95 (207)
T 2fv8_A 75 -----------------------------------------------------------LALWDTAGQEDYDRLRPLSYP 95 (207)
T ss_dssp -----------------------------------------------------------EEEEECTTCTTCTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCcHHHHHHHHhhcC
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+... ..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~------------------------- 146 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSD-EH------------------------- 146 (207)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGC-HH-------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhcc-cc-------------------------
Confidence 99999999999999999999 67998888764 57999999999999752 00
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
..+.+... ..+.+..++++.++...++
T Consensus 147 -----------------------~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~ 173 (207)
T 2fv8_A 147 -----------------------VRTELARM------------------------------KQEPVRTDDGRAMAVRIQA 173 (207)
T ss_dssp -----------------------HHHHHHHT------------------------------TCCCCCHHHHHHHHHHTTC
T ss_pred -----------------------chhhhhhc------------------------------ccCCCCHHHHHHHHHhcCC
Confidence 00111111 0123455677888888887
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|++|||++|.||+++|+.|++.+
T Consensus 174 ~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 174 YDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999865
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=203.17 Aligned_cols=175 Identities=23% Similarity=0.317 Sum_probs=133.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cce-eeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLY-SRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++. .+.+..++.....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~------------------------ 63 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA------------------------ 63 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCS------------------------
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccc------------------------
Confidence 34579999999999999999999999998887778776 333 3333333221000
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
......+.+.+||++|++.|..+...++
T Consensus 64 ----------------------------------------------------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 91 (195)
T 3bc1_A 64 ----------------------------------------------------VGRGQRIHLQLWDTAGLERFRSLTTAFF 91 (195)
T ss_dssp ----------------------------------------------------SCCCEEEEEEEEEECCSGGGHHHHHHTT
T ss_pred ----------------------------------------------------cccCcEEEEEEEeCCCcHHHHHHHHHHH
Confidence 0000123399999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+++.+..|+..+..... ...+|+++|+||+|+...
T Consensus 92 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~---------------------------- 142 (195)
T 3bc1_A 92 RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQ---------------------------- 142 (195)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGG----------------------------
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc----------------------------
Confidence 999999999999999999999999999887642 246888888888887641
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
+.+..++++.++...++
T Consensus 143 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 159 (195)
T 3bc1_A 143 ---------------------------------------------------------------RAVKEEEARELAEKYGI 159 (195)
T ss_dssp ---------------------------------------------------------------CCSCHHHHHHHHHHHTC
T ss_pred ---------------------------------------------------------------cccCHHHHHHHHHHcCC
Confidence 11223345556666788
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++|||++|.||+++|+.|++.+.
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998653
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=207.39 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=90.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCC------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHR 218 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r 218 (373)
+++|||+|++.|..++..+++++|++++|||++ +..+|+.+..|+.++.. ....+|+++||||+|+.+.
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~---~~~~~piilv~NK~Dl~~~-- 150 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL---TLDDVPIVIQVNKRDLPDA-- 150 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC---CTTSSCEEEEEECTTSTTC--
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc---ccCCCCEEEEEEchhcccc--
Confidence 999999999999999999999999999999999 56777788888777632 2367889999999998641
Q ss_pred ccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 219 AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 219 ~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
T Consensus 151 -------------------------------------------------------------------------------- 150 (198)
T 3t1o_A 151 -------------------------------------------------------------------------------- 150 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 299 YSTTCLESFQSVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 299 gnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+..++++.++...++ +|+||||++|.||+++|+.+++.+..
T Consensus 151 -----------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 151 -----------LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -----------CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 123345566667788 99999999999999999999986643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=194.61 Aligned_cols=161 Identities=30% Similarity=0.518 Sum_probs=135.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.+...+.+++.+.+.+.+..++..+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 52 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCL------------------------------ 52 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999888888887666666666666555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..++..++..+|+
T Consensus 53 -------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 53 -------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTGEG 77 (166)
T ss_dssp -------------------------------------------------------EEEEECCCCSSCCHHHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEEECCCchhhhHHHHHhhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+++.+..|+..+..... ...+|+++|+||+|+.. +.
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~--~~------------------------------ 124 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA--RT------------------------------ 124 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC--CC------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh--cc------------------------------
Confidence 9999999999999999999999887652 24689999999999864 10
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
+..++.+.+++..++++++|
T Consensus 125 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 144 (166)
T 2ce2_X 125 ------------------------------------------------------------VESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp ------------------------------------------------------------SCHHHHHHHHHHHTCCEEEE
T ss_pred ------------------------------------------------------------cCHHHHHHHHHHcCCeEEEe
Confidence 11234455566678899999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.|++++|+.+++.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999854
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=202.13 Aligned_cols=165 Identities=29% Similarity=0.510 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.+...+.+++.+.+...+.+++..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 70 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL---------------------------- 70 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE----------------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEE----------------------------
Confidence 4578999999999999999999999988888888877666666666666566
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..+...++..+
T Consensus 71 ---------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 71 ---------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp ---------------------------------------------------------EEEEECCC-----------CTTC
T ss_pred ---------------------------------------------------------EEEEECCChHHHHHHHHHhhCcC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||+++..+++.+..|+..+..... ...+|+++|+||+|+.. +.
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~--~~---------------------------- 142 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT--RT---------------------------- 142 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC--CC----------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc--cc----------------------------
Confidence 999999999999999999999999887652 24688999999999863 11
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..++.+.+++..+++|+
T Consensus 143 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 143 --------------------------------------------------------------VDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHHTCCEE
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHcCCeEE
Confidence 122344556666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|||++|.|++++|+.|++.+..
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987643
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=208.38 Aligned_cols=175 Identities=23% Similarity=0.350 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++....+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-------------------------- 76 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG-------------------------- 76 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccc--------------------------
Confidence 4579999999999999999999999999888888877 4545555544331000
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
. ......+.+.+|||+|++.|..++..++..
T Consensus 77 ----------------------------~---------------------~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 107 (217)
T 2f7s_A 77 ----------------------------S---------------------SGKAFKVHLQLWDTAGQERFRSLTTAFFRD 107 (217)
T ss_dssp ---------------------------------------------------CCEEEEEEEEEEEESHHHHHHHHHHHHTT
T ss_pred ----------------------------c---------------------ccCceeEEEEEEECCCcHhHHhHHHHHhcC
Confidence 0 000001239999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 108 ~d~iilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~------------------------------- 155 (217)
T 2f7s_A 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPD------------------------------- 155 (217)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGG-------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCcccc-------------------------------
Confidence 999999999999999999999987665432 113566777777777653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 156 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 156 ------------------------------------------------------------QREVNERQARELADKYGIPY 175 (217)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCCE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHCCCcE
Confidence 23334455667777788999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.|++.+.
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=205.31 Aligned_cols=165 Identities=28% Similarity=0.516 Sum_probs=135.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+|+|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 70 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK-------------------------- 70 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEE--------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEE--------------------------
Confidence 34579999999999999999999999998887778777 555566666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 71 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 71 -----------------------------------------------------------LQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp -----------------------------------------------------------EEEECCTTGGGGTCCCHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.. +.
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~--~~-------------------------- 141 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMET--RV-------------------------- 141 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSS--CC--------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc--cc--------------------------
Confidence 99999999999999999999999999887642 4689999999999842 11
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+..++++.++...+++
T Consensus 142 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 142 ----------------------------------------------------------------VTADQGEALAKELGIP 157 (213)
T ss_dssp ----------------------------------------------------------------SCHHHHHHHHHHHTCC
T ss_pred ----------------------------------------------------------------cCHHHHHHHHHHcCCE
Confidence 1223345556667889
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|++|||++|.||+++|+.|++.+..
T Consensus 158 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 158 FIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999986643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=209.46 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=102.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhc--ccCCceeccee-cceeeeeeecce--EEeeeeeEEeccCCccchhhhccc
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVE-DLYSRDFHVGAV--TIKEIPIVVAGNKSDMTSHHRAVH 80 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (373)
+....+||+|+|++|||||||+++|+++ .|...+.+|++ +++.+.+.+++. .+.
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--------------------- 74 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE--------------------- 74 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEE---------------------
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEE---------------------
Confidence 4456799999999999999999999988 88888888887 777777777665 555
Q ss_pred ccceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhH
Q psy16673 81 LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMR 160 (373)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~ 160 (373)
+.+|||+|++.|..++
T Consensus 75 ----------------------------------------------------------------~~l~Dt~G~~~~~~~~ 90 (208)
T 2yc2_C 75 ----------------------------------------------------------------LFLLDTAGSDLYKEQI 90 (208)
T ss_dssp ----------------------------------------------------------------EEEEETTTTHHHHHHH
T ss_pred ----------------------------------------------------------------EEEEECCCcHHHHHHH
Confidence 9999999999999999
Q ss_pred HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchh
Q psy16673 161 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAM 239 (373)
Q Consensus 161 ~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~ 239 (373)
..++.++|++++|||++++.+|+.+..|+..+...... ...+|+++||||+|+...
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~----------------------- 147 (208)
T 2yc2_C 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ----------------------- 147 (208)
T ss_dssp STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----------------------------
T ss_pred HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchh-----------------------
Confidence 99999999999999999999999999999999876420 136778888888887530
Q ss_pred hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh
Q psy16673 240 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319 (373)
Q Consensus 240 ~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a 319 (373)
.+.++.++++.++
T Consensus 148 -------------------------------------------------------------------~~~v~~~~~~~~~ 160 (208)
T 2yc2_C 148 -------------------------------------------------------------------RHQVRLDMAQDWA 160 (208)
T ss_dssp ---------------------------------------------------------------------CCCHHHHHHHH
T ss_pred -------------------------------------------------------------------hccCCHHHHHHHH
Confidence 1223445566777
Q ss_pred hhcCCeEEEeccCC-CcCHHHHHHHHHHHh
Q psy16673 320 QRQDFQLLECSAKD-NYNIKEVFRTFLTLS 348 (373)
Q Consensus 320 ~~~~~~~~E~SAkt-g~nv~elf~~i~~~~ 348 (373)
...+++|++|||++ |.||+++|+.+++.+
T Consensus 161 ~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 161 TTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred HHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 77889999999999 999999999999865
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=207.65 Aligned_cols=178 Identities=20% Similarity=0.251 Sum_probs=138.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceec-ceeeeeeecc-eEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-LYSRDFHVGA-VTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
....+||+|+|++|||||||+++|+++.|...+.++.+. .......... ..+.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~------------------------- 62 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK------------------------- 62 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEE-------------------------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEE-------------------------
Confidence 445799999999999999999999998888877777763 2222222211 1133
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.+..+...++
T Consensus 63 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 82 (218)
T 4djt_A 63 ------------------------------------------------------------FNVWDTAGQEKKAVLKDVYY 82 (218)
T ss_dssp ------------------------------------------------------------EEEEEECSGGGTSCCCHHHH
T ss_pred ------------------------------------------------------------EEEEecCCchhhchHHHHHh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.++|++++|||++++.+++.+..|+..+..... ..+|+++||||+|+.+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~----------------------------- 131 (218)
T 4djt_A 83 IGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKN----------------------------- 131 (218)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC------------------------------
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc-----------------------------
Confidence 999999999999999999999999999987753 4578888888888764
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.++...++
T Consensus 132 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 149 (218)
T 4djt_A 132 --------------------------------------------------------------RQKISKKLVMEVLKGKNY 149 (218)
T ss_dssp -----------------------------------------------------------------CCHHHHHHHTTTCCC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHcCC
Confidence 112233455667777889
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhhhhccCCCcccccc
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKR 362 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~~~~~~~~~~~~~~ 362 (373)
+|++|||++|.||+++|+.+++.+...........++.
T Consensus 150 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 150 EYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp EEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCc
Confidence 99999999999999999999998766655555444443
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=203.42 Aligned_cols=123 Identities=25% Similarity=0.519 Sum_probs=103.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+|+|++|||||||+++|+++.|...+.++++ +++...+.+++..+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 58 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT-------------------------- 58 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEE--------------------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEE--------------------------
Confidence 45689999999999999999999999999888888876 666666666555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 59 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 59 -----------------------------------------------------------MQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -----------------------------------------------------------EEEEEECSSGGGSCSCCGGGT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHHHhHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEeccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMT 214 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~ 214 (373)
++|++++|||++++.+|+.+..|+..+...... ...+|+++||||+|+.
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 999999999999999999999999988776521 1367888888888875
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=193.66 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=62.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++.++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcC
Confidence 9999999999999999999999999999999999999999999988876532 225789999999999974
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=200.62 Aligned_cols=122 Identities=16% Similarity=0.226 Sum_probs=94.8
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCC-ceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
.....+||+|+|++|||||||+++|+++.|.. .+.+|++ +....+ ....+.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~--~~~~~~------------------------- 64 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETF--EKGRVA------------------------- 64 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEE--EETTEE-------------------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEE--EeCCEE-------------------------
Confidence 45568899999999999999999999998887 7777776 111111 111222
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 65 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 65 ------------------------------------------------------------FTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp ------------------------------------------------------------EEEEEECCSGGGGGGGGGGC
T ss_pred ------------------------------------------------------------EEEEECCCCHhHHHHHHHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc------CCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD------FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~------~~~~pi~ivgnK~Dl~~ 215 (373)
+++|++++|||++++.+|+.+..|+..+...... ...+|+++||||+|+..
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 9999999999999999999999998887654211 13789999999999975
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=201.49 Aligned_cols=121 Identities=18% Similarity=0.341 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc--ccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+||+|+|++|||||||+++|++. .|...+.+|++ ++....+.+...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~------------------------------ 51 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK------------------------------ 51 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC-----------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC------------------------------
Confidence 579999999999999999999974 56666677765 443333322100
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
....+.+.+|||+|+++|..+++.++++
T Consensus 52 ----------------------------------------------------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 79 (184)
T 2zej_A 52 ----------------------------------------------------RKRDLVLNVWDFAGREEFYSTHPHFMTQ 79 (184)
T ss_dssp --------------------------------------------------------CEEEEEEECSHHHHHTTSHHHHHH
T ss_pred ----------------------------------------------------CCCceEEEEEecCCCHHHHHhhHHHccC
Confidence 0011229999999999999999999999
Q ss_pred cCeEEEEEeCCCh-hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++++|||++++ .+|+.+..|+.++.... +.+|+++||||+|+.+
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD 126 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence 9999999999997 68999999999887654 5789999999999864
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=206.82 Aligned_cols=121 Identities=26% Similarity=0.498 Sum_probs=107.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+++|+.+.|...+.++.+ ++......+++..+.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 65 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK-------------------------- 65 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEE--------------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEE--------------------------
Confidence 45579999999999999999999999999888888887 556666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 66 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 66 -----------------------------------------------------------FNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp -----------------------------------------------------------EEEEEECSGGGTSCCCHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCChHHHhHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+.... ..+|+++||||+|+.+
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 133 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccc
Confidence 9999999999999999999999999998875 5899999999999975
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=198.72 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=98.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..++.+||+|+|++|||||||+++|+++.|...+.+|++..+.. + ....+.
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~-------------------------- 68 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-I--TKGNVT-------------------------- 68 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-E--EETTEE--------------------------
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-E--EeCCEE--------------------------
Confidence 34568999999999999999999999999887777777633221 1 111122
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..++.
T Consensus 69 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 69 -----------------------------------------------------------IKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp -----------------------------------------------------------EEEEEECCSHHHHTTHHHHHT
T ss_pred -----------------------------------------------------------EEEEECCCCHhHHHHHHHHHc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCcc
Confidence 9999999999999999999999988876532 125799999999999975
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-28 Score=211.66 Aligned_cols=163 Identities=32% Similarity=0.509 Sum_probs=128.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.+++. ++..+.+.+++..+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 83 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK--------------------------- 83 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEE---------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEE---------------------------
Confidence 4479999999999999999999999998888878877 666677777776666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..+...++..
T Consensus 84 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 84 ----------------------------------------------------------LQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp ----------------------------------------------------------EEEECCTTCTTCCCCSCC--CC
T ss_pred ----------------------------------------------------------EEEEECCCcHhHHHHHHHHhhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+. +
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~-~---------------------------- 154 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK-K---------------------------- 154 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC---C----------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc-c----------------------------
Confidence 9999999999999999999999998876532 46888888888887641 1
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+..++++.++...+++|
T Consensus 155 --------------------------------------------------------------~v~~~~~~~~~~~~~~~~ 172 (199)
T 3l0i_B 155 --------------------------------------------------------------VVDYTTAKEFADSLGIPF 172 (199)
T ss_dssp --------------------------------------------------------------CCCSCC-CHHHHTTTCCB
T ss_pred --------------------------------------------------------------cCCHHHHHHHHHHcCCeE
Confidence 122233455667778899
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.||+++|+.|++.+
T Consensus 173 ~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 173 LETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCCCC---HHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=195.56 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=61.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++.++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTT
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCccc
Confidence 9999999999999999999999999999999999999999999988775432 125789999999999975
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=194.93 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=93.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.++.+||+++|++|||||||+++|+++.|. .+.||++ +..+.+.+++ +.
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~--------------------------- 61 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TR--------------------------- 61 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EE---------------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EE---------------------------
Confidence 356899999999999999999999988876 5666665 2222232221 22
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++++..++..++.+
T Consensus 62 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 83 (187)
T 1zj6_A 62 ----------------------------------------------------------FLMWDIGGQESLRSSWNTYYTN 83 (187)
T ss_dssp ----------------------------------------------------------EEEEECCC----CGGGHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCCHhHHHHHHHHhcC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcC
Confidence 999999999999999999999998887642 125799999999999974
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-28 Score=214.05 Aligned_cols=174 Identities=25% Similarity=0.465 Sum_probs=139.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 79 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN--------------------------- 79 (204)
Confidence 46789999999999999999999999999888888888766666655555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|+++|..++..++.+
T Consensus 80 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 3th5_A 80 ----------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQ 101 (204)
Confidence 8999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. +.....
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~-~~~~~~---------------------- 155 (204)
T 3th5_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KDTIEK---------------------- 155 (204)
Confidence 99999999999999999997 7988887654 47999999999999752 100000
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
+. ....+.+..++++.+++..++
T Consensus 156 --------------------------~~------------------------------~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 156 --------------------------LK------------------------------EKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 00 001122344566777777887
Q ss_pred eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|++|||++|.||+++|+.+++.
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 89999999999999999999874
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=198.67 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=91.6
Q ss_pred eeeeccccccchhHhH---HhhhhhcCeEEEEEeCCCh--hhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMR---RLSIATAHAFLLVYSTTCL--ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRA 219 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~---~~~~~~~~~~i~v~dv~~~--~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~ 219 (373)
+++|||+|+++|..+. ..+++++|++++|||++++ .+++.+..|+..+.... +++|+++||||+|+.+....
T Consensus 71 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~---~~~piilv~nK~Dl~~~~~~ 147 (196)
T 3llu_A 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN---PDMNFEVFIHKVDGLSDDHK 147 (196)
T ss_dssp EEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC---TTCEEEEEEECGGGSCHHHH
T ss_pred EEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC---CCCcEEEEEeccccCchhhh
Confidence 9999999999998877 8999999999999999997 66666777777665433 68999999999999752000
Q ss_pred cccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 220 VHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 220 ~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
T Consensus 148 -------------------------------------------------------------------------------- 147 (196)
T 3llu_A 148 -------------------------------------------------------------------------------- 147 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhHHHHHhh----hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 300 STTCLESFQSVKCYFEEIREQ----RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~~~a~----~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++++.+++ ..+++|+||||++ .||+++|+.+++.
T Consensus 148 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 148 ----IETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred ----hHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 01123445566677777 7789999999999 9999999999984
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=196.28 Aligned_cols=120 Identities=15% Similarity=0.276 Sum_probs=90.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+.+.|.. +.||++ +..+.+... .
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~--~---------------------------- 72 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--N---------------------------- 72 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEET--T----------------------------
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEEC--C----------------------------
Confidence 35678999999999999999999999887753 455544 212222211 1
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+.+|||+|++.|..++..++.
T Consensus 73 ---------------------------------------------------------~~~~i~Dt~G~~~~~~~~~~~~~ 95 (192)
T 2b6h_A 73 ---------------------------------------------------------ICFTVWDVGGQDKIRPLWRHYFQ 95 (192)
T ss_dssp ---------------------------------------------------------EEEEEEECC-----CTTHHHHHH
T ss_pred ---------------------------------------------------------EEEEEEECCCCHhHHHHHHHHhc
Confidence 12999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCC
Confidence 9999999999999999999999988876543 225799999999999975
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=220.28 Aligned_cols=297 Identities=15% Similarity=0.103 Sum_probs=167.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEe-ccCC-----------ccchhh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVA-GNKS-----------DMTSHH 76 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~ 76 (373)
.+|+|+|++|||||||+|||++..+ +.+.+. .|++.......+.+..+.++ ..+. ...++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 76 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTL 76 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHH
Confidence 3799999999999999999996543 222221 23333344444445555444 1111 112344
Q ss_pred hcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccc
Q psy16673 77 RAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGD 153 (373)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~ 153 (373)
..++++|+++|++|.... .+.....+.+..++|+++|+||+|+..... .+. .+.
T Consensus 77 ~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~----~~~-~~~------------------ 133 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE----REV-KPE------------------ 133 (439)
T ss_dssp HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH----HHT-HHH------------------
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH----HHH-HHH------------------
Confidence 578999999999996432 233344444556899999999999643100 000 000
Q ss_pred cchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHH-HHHHHHh-c------cCCCccEEEecc----cccccc------
Q psy16673 154 LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQR-Q------DFQEIPIVVAGN----KSDMTS------ 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~-~~i~~~~-~------~~~~~pi~ivgn----K~Dl~~------ 215 (373)
++...-+-++..+.......+.+..++ +.+.+.. . ....+.++++|. |+.|.+
T Consensus 134 ---------~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 134 ---------LYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp ---------HGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ---------HHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 000000011223333444444443333 2222111 0 011245667774 444432
Q ss_pred ----------------cccccccccceeeeccCCCCCch-----------hh-hhccccccEEEEEEecCCccchhhHHH
Q psy16673 216 ----------------HHRAVHLEDVDILDTCGDLQFPA-----------MR-RLSIATAHAFLLVYSTTCLESFQSVKC 267 (373)
Q Consensus 216 ----------------~~r~~~~~~~~~~dtag~~~~~~-----------~~-~~s~~~a~~~i~v~dvt~~~S~~~v~~ 267 (373)
..-......+.++||+|+.++.. ++ ..++..++++++++|++++.++++..
T Consensus 205 ~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~- 283 (439)
T 1mky_A 205 RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR- 283 (439)
T ss_dssp TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-
T ss_pred ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-
Confidence 01112233467889999854432 22 24678899999999999988876532
Q ss_pred HHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhh-----hHHHHHhhhcCCeEEEeccCCCcCHHHHHH
Q psy16673 268 YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-----YFEEIREQRQDFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 268 ~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~-----~~~~~~a~~~~~~~~E~SAktg~nv~elf~ 342 (373)
+...+.. . +.++++|+||||+...+.++. ...+.++...++++++|||++|.||+++|+
T Consensus 284 i~~~l~~----~------------~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 284 MAGLMER----R------------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp HHHHHHH----T------------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHH----c------------CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 2222222 1 334569999999976554322 333455556678999999999999999999
Q ss_pred HHHHHhhhhccCCCccccc
Q psy16673 343 TFLTLSQILTTNGDENSLK 361 (373)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~ 361 (373)
.+.+.+.....+..++.++
T Consensus 348 ~i~~~~~~~~~~i~t~~ln 366 (439)
T 1mky_A 348 AMNLAYASYTTKVPSSAIN 366 (439)
T ss_dssp HHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHhhcccCCHHHHH
Confidence 9999887766666555544
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=197.59 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=89.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+++.|. .+.||++.. ...+.+++ +.
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~--------------------------- 70 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MT--------------------------- 70 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EE---------------------------
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EE---------------------------
Confidence 356789999999999999999999988774 355665532 22333332 22
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++++
T Consensus 71 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 92 (198)
T 1f6b_A 71 ----------------------------------------------------------FTTFDLGGHIQARRVWKNYLPA 92 (198)
T ss_dssp ----------------------------------------------------------EEEEEECC----CCGGGGGGGG
T ss_pred ----------------------------------------------------------EEEEECCCcHhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+..+.+.. ....+|+++||||+|+..
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE 140 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc
Confidence 999999999999999999999998887543 125799999999999964
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=199.76 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=90.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecce-EEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAV-TIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.+..+||+++|++|||||||+++|+.+.|...+.++..+++. +.+++. .+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------------------------- 54 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGN--------------------------- 54 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCC---------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCcc---------------------------
Confidence 456789999999999999999999999888877655544332 222211 12
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLSI 164 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~~ 164 (373)
.+.+|||+|++.|.. ++..++
T Consensus 55 ----------------------------------------------------------~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 55 ----------------------------------------------------------SLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp ----------------------------------------------------------EEEEEECCCCHHHHHHHHHHHG
T ss_pred ----------------------------------------------------------EEEEEECCCChhHHHHHHHHHH
Confidence 299999999999988 888899
Q ss_pred hhcCeEEEEEeCCChh-hHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLE-SFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~-s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++++++|||+++.. ++..+.. |...+.........+|+++||||+|+..
T Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 77 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 9999999999999853 4655555 4444444222235799999999999975
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=193.85 Aligned_cols=120 Identities=15% Similarity=0.235 Sum_probs=95.0
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+++.| ..+.+|++.. .+.+.+++ ..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~-------------------------- 66 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TR-------------------------- 66 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EE--------------------------
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EE--------------------------
Confidence 345689999999999999999999998887 5556666521 22222221 22
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|+++|..++..++.
T Consensus 67 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 87 (181)
T 2h17_A 67 -----------------------------------------------------------FLMWDIGGQESLRSSWNTYYT 87 (181)
T ss_dssp -----------------------------------------------------------EEEEEESSSGGGTCGGGGGGT
T ss_pred -----------------------------------------------------------EEEEECCCCHhHHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCccc
Confidence 9999999999999999999999988876542 125799999999999974
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=188.34 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=61.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+..++..++.++|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcC
Confidence 8999999999999999999999999999999999999999999888776542 125789999999999975
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=193.18 Aligned_cols=119 Identities=19% Similarity=0.348 Sum_probs=94.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+++.|. .+.+|++.. ...+.+++ +.
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~--------------------------- 68 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IK--------------------------- 68 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EE---------------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EE---------------------------
Confidence 355789999999999999999999988875 355555432 22333332 22
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..++..++++
T Consensus 69 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 1m2o_B 69 ----------------------------------------------------------FTTFDLGGHIQARRLWKDYFPE 90 (190)
T ss_dssp ----------------------------------------------------------EEEEECCCSGGGTTSGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+..
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence 999999999999999999999998887543 225799999999999974
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=192.00 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=96.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc-cCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT-YSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~-f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+++. |...+.+|++ +..+.+.+++ +.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~-------------------------- 68 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LS-------------------------- 68 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CE--------------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EE--------------------------
Confidence 4458999999999999999999999877 5666666665 2223333221 22
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.+..++..++.
T Consensus 69 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 89 (190)
T 2h57_A 69 -----------------------------------------------------------FTVFDMSGQGRYRNLWEHYYK 89 (190)
T ss_dssp -----------------------------------------------------------EEEEEECCSTTTGGGGGGGGG
T ss_pred -----------------------------------------------------------EEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+...... ...+|+++|+||+|+.+
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 999999999999999999999998888765310 14689999999999974
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=208.16 Aligned_cols=174 Identities=26% Similarity=0.477 Sum_probs=144.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 204 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN---------------------------- 204 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEE----------------------------
Confidence 3468999999999999999999999999988999988777777777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|++.|..+...++..+
T Consensus 205 ---------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 205 ---------------------------------------------------------LGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp ---------------------------------------------------------EEEEEECCCGGGTTTGGGGCTTC
T ss_pred ---------------------------------------------------------EEEEeCCCchhhhHHHHHhccCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.+|+.+. .|+..+.... ..+|+++||||+|+.+. ..
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~--------------------------- 276 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KD--------------------------- 276 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTC-HH---------------------------
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccc-cc---------------------------
Confidence 9999999999999999997 6998888765 48999999999999752 00
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-e
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-Q 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~ 325 (373)
..+.+.. ...+.++.++++.++...++ +
T Consensus 277 ---------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~ 305 (332)
T 2wkq_A 277 ---------------------TIEKLKE------------------------------KKLTPITYPQGLAMAKEIGAVK 305 (332)
T ss_dssp ---------------------HHHHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSE
T ss_pred ---------------------hhhhccc------------------------------cccccccHHHHHHHHHHcCCcE
Confidence 0001110 01234466778888888887 9
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999864
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=190.31 Aligned_cols=164 Identities=29% Similarity=0.459 Sum_probs=133.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||++++++..|...+.++++ ++....+.+++..+.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~--------------------------- 55 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK--------------------------- 55 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEE---------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE---------------------------
Confidence 4578999999999999999999999999888888876 566677777777666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 56 ----------------------------------------------------------~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 56 ----------------------------------------------------------AQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp ----------------------------------------------------------EEEEECSSGGGTTCCCHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCchhhhhhhHHHHhc
Confidence 9999999999999888899999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++++|||+++..+|+.+..|+..+.... ....|+++++||+|+..
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~------------------------------- 124 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH------------------------------- 124 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG-------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc-------------------------------
Confidence 999999999999999999999988776542 24678888888888754
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 125 ------------------------------------------------------------~~~~~~~~a~~l~~~~~~~~ 144 (199)
T 2f9l_A 125 ------------------------------------------------------------LRAVPTDEARAFAEKNNLSF 144 (199)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCEE
T ss_pred ------------------------------------------------------------ccCcCHHHHHHHHHHcCCeE
Confidence 11122334566777778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||+++.|++++|+.+.+.+.
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998663
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=190.52 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++|+++. ...+.||++ ...+.+.++ ...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~--~~~---------------------------- 63 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHR--GFK---------------------------- 63 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEET--TEE----------------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEEC--CEE----------------------------
Confidence 578999999999999999999999777 556666665 212222221 122
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++++..++..++.++
T Consensus 64 ---------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 64 ---------------------------------------------------------LNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp ---------------------------------------------------------EEEEEECCSHHHHTTGGGGCTTC
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPG 133 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCC
Confidence 99999999999999999999988876542 125799999999999975
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=201.81 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=97.0
Q ss_pred CCCCceEEEEEcCC---------CCChHHHHHHHHh---cccCCceecce-e-cceeeeeeecceEEeeeeeEEeccCCc
Q psy16673 6 CDNERIRLVILGGQ---------GVGKSCILKRFLF---NTYSDRYRSTV-E-DLYSRDFHVGAVTIKEIPIVVAGNKSD 71 (373)
Q Consensus 6 ~~~~~~kI~ivG~~---------~VGKSsL~~r~~~---~~f~~~~~~t~-~-d~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (373)
.....+||+|+|++ |||||||+++|+. +.|...+.+++ + ++..+.+.+++..+-+....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~------- 87 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSR------- 87 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccc-------
Confidence 34567999999999 9999999999998 67777777876 3 66655555432211100000
Q ss_pred cchhhhcccccceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeec--
Q psy16673 72 MTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILD-- 149 (373)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D-- 149 (373)
...++..+.+++||
T Consensus 88 ----------------------------------------------------------------~~~~~~~~~l~i~D~~ 103 (255)
T 3c5h_A 88 ----------------------------------------------------------------SLEDCVECKMHIVEQT 103 (255)
T ss_dssp ------------------------------------------------------------------------CEEEEEEC
T ss_pred ----------------------------------------------------------------cccCCcEEEEEEEEcc
Confidence 00011223388888
Q ss_pred ---------------------cccccchhHhHHhhhh---------------------hcCeEEEEEeCCCh--hhHHHH
Q psy16673 150 ---------------------TCGDLQFPAMRRLSIA---------------------TAHAFLLVYSTTCL--ESFQSV 185 (373)
Q Consensus 150 ---------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~dv~~~--~s~~~l 185 (373)
++|+++|..++..++. ++|++++|||++++ .+|+.+
T Consensus 104 ~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~ 183 (255)
T 3c5h_A 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ 183 (255)
T ss_dssp CCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHH
Confidence 7888888888888887 79999999999998 999999
Q ss_pred HHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 186 KCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 186 ~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..|+.++..... ...+|+++||||+|+..
T Consensus 184 ~~~l~~i~~~~~-~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 184 LKFVSNLYNQLA-KTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEEECGGGBC
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEEcccccc
Confidence 999998876521 14688888888888854
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=192.23 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=61.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTT
T ss_pred EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcC
Confidence 9999999999999999999999999999999999999999999888776532 125789999999999975
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-25 Score=189.52 Aligned_cols=118 Identities=21% Similarity=0.344 Sum_probs=91.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++|+.+.+ ..+.+|++ +....+.+++ ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~---------------------------- 63 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LK---------------------------- 63 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EE----------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EE----------------------------
Confidence 5789999999999999999999998777 45555555 2122222221 22
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..++.++
T Consensus 64 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 86 (183)
T 1moz_A 64 ---------------------------------------------------------LNVWDLGGQTSIRPYWRCYYADT 86 (183)
T ss_dssp ---------------------------------------------------------EEEEEEC----CCTTGGGTTTTE
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCC
Confidence 99999999999999999999988876542 126789999999999974
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=183.08 Aligned_cols=161 Identities=30% Similarity=0.456 Sum_probs=134.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+|+|++|||||||+++|++..++..+.+|++ ++....+.+++..+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~---------------------------- 79 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK---------------------------- 79 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE----------------------------
Confidence 368999999999999999999999999888888887 556677777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++++..+...++..+
T Consensus 80 ---------------------------------------------------------~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 80 ---------------------------------------------------------AQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp ---------------------------------------------------------EEEEEECSCCSSSCCCHHHHTTC
T ss_pred ---------------------------------------------------------EEEEECCCCcchhhhhHHHhhcC
Confidence 89999999999998888999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||+++..+|+++..|+..+.... ....|+++++||.|+.+
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~-------------------------------- 148 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH-------------------------------- 148 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG--------------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc--------------------------------
Confidence 99999999999999999999988776542 24678888888888764
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.++...++.|+
T Consensus 149 -----------------------------------------------------------~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 149 -----------------------------------------------------------LRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEE
T ss_pred -----------------------------------------------------------ccccCHHHHHHHHHHcCCEEE
Confidence 111223356667777889999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
+|||+++.|++++|+.+.+.
T Consensus 170 d~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 170 ETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=180.10 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred eeeeccccccchh------HhHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~------~~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|. .+...+++ +++++++|||+++.. ....|+.++.+ ..+|+++||||+|+..
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME-----MGANLLLALNKMDLAK 122 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH-----TTCCEEEEEECHHHHH
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh-----cCCCEEEEEEchHhcc
Confidence 8999999998874 45566665 799999999998753 44557777654 3688999999999864
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=202.26 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=86.7
Q ss_pred eeeeccccccchhH---hHHhhhhhcCeEEEEEeCCChhhHHHHHHH---HHHHHHHhccCCCccEEEecccccccccc-
Q psy16673 145 VDILDTCGDLQFPA---MRRLSIATAHAFLLVYSTTCLESFQSVKCY---FEEIREQRQDFQEIPIVVAGNKSDMTSHH- 217 (373)
Q Consensus 145 ~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~---~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~- 217 (373)
+++|||+||++|.. ++..||++++++++|||++++ .++.+..| +.++... .+++|++++|||+|+.++.
T Consensus 48 LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~---~~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 48 LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKV---NPSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp EEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHH---CTTCEEEEECCCCCSSCSHH
T ss_pred EEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhc---CCCCcEEEEEECcccCchhh
Confidence 99999999999964 578999999999999999998 44444444 4444433 2689999999999987520
Q ss_pred cccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 218 r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
|.
T Consensus 124 R~------------------------------------------------------------------------------ 125 (331)
T 3r7w_B 124 KV------------------------------------------------------------------------------ 125 (331)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred eccccccccchhhhhhHHHHHhhh----cCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQR----QDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~----~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+..|.|..++++.+|+. .+++||||||++ .||.++|..+++.
T Consensus 126 -------~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 126 -------DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp -------HHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred -------hHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence 01245666777888875 689999999998 5999999999974
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=195.89 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=61.6
Q ss_pred eeeeccccccch-----hHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF-----PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.| ..++..+++++|++++|||++++.+|+.+..|...+.......+.+|+++||||+|+..
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 999999999998 67888999999999999999999999999888776666543346799999999999874
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-24 Score=181.47 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=86.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..++.+||+++|++|||||||+++|+++.|...+.+++. +.....+.+++. .
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------------- 56 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--K------------------------- 56 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--E-------------------------
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--e-------------------------
Confidence 356788999999999999999999999888776666554 333333333321 1
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 57 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 76 (178)
T 2lkc_A 57 ------------------------------------------------------------ITFLDTPGHEAFTTMRARGA 76 (178)
T ss_dssp ------------------------------------------------------------EEESCCCSSSSSSCSCCSSC
T ss_pred ------------------------------------------------------------EEEEECCCCHHHHHHHHHHH
Confidence 78999999999998888889
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+|++++|||+++....+.+. .+.... ...+|+++|+||+|+..
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~----~l~~~~--~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVE----AINHAK--AANVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHH----HHHHHG--GGSCCEEEEEETTTSSC
T ss_pred hhCCEEEEEEECCCCCcHHHHH----HHHHHH--hCCCCEEEEEECccCCc
Confidence 9999999999998843222221 122221 14789999999999974
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=200.13 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=57.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCc
Confidence 9999999999999999999999999999999999999999998887765543 225799999999999975
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=180.42 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred eeeeccccc------cc----hhHhHHhhhhhcCeEEEEEeCCChhhHHH--HHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGD------LQ----FPAMRRLSIATAHAFLLVYSTTCLESFQS--VKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~------~~----~~~~~~~~~~~~~~~i~v~dv~~~~s~~~--l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|+ +. +..+. .++..+|++++|||++++.+|+. ...|+..+... ...+|+++||||+|
T Consensus 78 ~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~D 153 (228)
T 2qu8_A 78 YQIIDTPGLLDRAFENRNTIEMTTIT-ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKID 153 (228)
T ss_dssp EEEEECTTTTTSCGGGCCHHHHHHHH-HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGG
T ss_pred EEEEECCCCcCcccchhhhHHHHHHH-HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcc
Confidence 899999998 43 33333 34678899999999999988752 23455555432 24789999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+.+
T Consensus 154 l~~ 156 (228)
T 2qu8_A 154 KCN 156 (228)
T ss_dssp GCC
T ss_pred cCC
Confidence 875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-23 Score=177.43 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=52.3
Q ss_pred eeeeccccccchh----H--h--HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP----A--M--RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~----~--~--~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+. . + ...+++.+|++++|||++++.+++ ...|+..+.+... ..+|+++|+||+|+.+
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP--AKLPITVVRNKADITG 129 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence 8899999986532 1 1 224688999999999999998876 4568777766532 4689999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=173.39 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred eeeeccccccchh------HhHHhhhhh--cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP------AMRRLSIAT--AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~------~~~~~~~~~--~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+. .+...++.. ++++++|+|.++ ++.+..|+..+.. ..+|+++|+||+|+..
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAK 126 (188)
T ss_dssp EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence 8999999998874 456666654 899999999875 6667778877764 3688999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=174.95 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=53.7
Q ss_pred eeeecccc-----------ccchhHhHHhhhhh-cCeEEEEEeCCChhhHHHH-HHHHHH--------HHHHhccCCCcc
Q psy16673 145 VDILDTCG-----------DLQFPAMRRLSIAT-AHAFLLVYSTTCLESFQSV-KCYFEE--------IREQRQDFQEIP 203 (373)
Q Consensus 145 ~~i~D~~g-----------~~~~~~~~~~~~~~-~~~~i~v~dv~~~~s~~~l-~~~~~~--------i~~~~~~~~~~p 203 (373)
+.+|||+| ++.|..+...++.. ++++++||++.+..+|+.+ ..|... +.... ....+|
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p 124 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL-RELDIP 124 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH-HHTTCC
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH-HhcCCc
Confidence 88999999 77888888888888 9999999999999999887 567653 22211 114677
Q ss_pred EEEecccccccc
Q psy16673 204 IVVAGNKSDMTS 215 (373)
Q Consensus 204 i~ivgnK~Dl~~ 215 (373)
+++||||+|+..
T Consensus 125 iilv~nK~Dl~~ 136 (190)
T 2cxx_A 125 TIVAVNKLDKIK 136 (190)
T ss_dssp EEEEEECGGGCS
T ss_pred eEEEeehHhccC
Confidence 888888888764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=166.62 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=47.7
Q ss_pred eeeeccccccc-------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ-------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~-------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++. +......++..+|++++|||+++..+... .|+...... ..+|+++||||+|+.+
T Consensus 51 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 51 FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPK 122 (161)
T ss_dssp EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGG
T ss_pred EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECccccc
Confidence 88999999887 34566677899999999999998644432 222222222 3688999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-22 Score=171.52 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=52.1
Q ss_pred eeeecccc----------ccchhHhHHhhhhhc---CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~~~~~~---~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+| ++.|..+...++..+ |++++|+|+++..++.... ++..+.. ..+|+++|+||+
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~ 144 (195)
T 1svi_A 71 LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKA 144 (195)
T ss_dssp EEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECG
T ss_pred EEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECc
Confidence 89999999 778888888888888 9999999999988877643 2222222 468999999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 145 Dl~~ 148 (195)
T 1svi_A 145 DKIP 148 (195)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9875
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-22 Score=202.09 Aligned_cols=170 Identities=13% Similarity=0.162 Sum_probs=113.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+++|+++.|...+.+|++ ++.++....-+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~------------------------------ 87 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIK------------------------------ 87 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSG------------------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccc------------------------------
Confidence 45679999999999999999999999999888888887 33322110000
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
.+........+.+.+||++|++.|..+...+++
T Consensus 88 -----------------------------------------------~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~ 120 (535)
T 3dpu_A 88 -----------------------------------------------GLENDDELKECLFHFWDFGGQEIMHASHQFFMT 120 (535)
T ss_dssp -----------------------------------------------GGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred -----------------------------------------------ceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence 000000112234999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+++++++|||+++. +.+..|+..+..+. ++.|+++||||+|+... +
T Consensus 121 ~~d~ii~V~D~s~~---~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~-~--------------------------- 166 (535)
T 3dpu_A 121 RSSVYMLLLDSRTD---SNKHYWLRHIEKYG---GKSPVIVVMNKIDENPS-Y--------------------------- 166 (535)
T ss_dssp SSEEEEEEECGGGG---GGHHHHHHHHHHHS---SSCCEEEEECCTTTCTT-C---------------------------
T ss_pred CCcEEEEEEeCCCc---hhHHHHHHHHHHhC---CCCCEEEEEECCCcccc-c---------------------------
Confidence 99999999998754 66778999998875 46889999999998641 1
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+..+..+.++...+++
T Consensus 167 ---------------------------------------------------------------~v~~~~~~~~~~~~~~~ 183 (535)
T 3dpu_A 167 ---------------------------------------------------------------NIEQKKINERFPAIENR 183 (535)
T ss_dssp ---------------------------------------------------------------CCCHHHHHHHCGGGTTC
T ss_pred ---------------------------------------------------------------ccCHHHHHHHHHhcCCc
Confidence 11222344455566789
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|++|||++|.||+++|+.+++.+..
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTC
T ss_pred eEEEecCcccCHHHHHHHHHHHHhc
Confidence 9999999999999999999997644
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=162.84 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred eeeecccc----------ccchhHhHHhhhhhc---CeEEEEEeCCChhhHH--HHHHHHHHHHHHhccCCCccEEEecc
Q psy16673 145 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQEIPIVVAGN 209 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~~~~~~---~~~i~v~dv~~~~s~~--~l~~~~~~i~~~~~~~~~~pi~ivgn 209 (373)
+.+|||+| ++.|..+...+++.+ +++++|+|.++..+.. .+..|+.. ..+|+++|+|
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~p~i~v~n 141 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--------LNIPFTIVLT 141 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--------TTCCEEEEEE
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--------cCCCEEEEEE
Confidence 88999999 777888888888877 8999999988764433 33334332 2689999999
Q ss_pred cccccc
Q psy16673 210 KSDMTS 215 (373)
Q Consensus 210 K~Dl~~ 215 (373)
|+|+.+
T Consensus 142 K~Dl~~ 147 (195)
T 3pqc_A 142 KMDKVK 147 (195)
T ss_dssp CGGGSC
T ss_pred ChhcCC
Confidence 999874
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=173.04 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=78.2
Q ss_pred eeeeccccccchhH------hHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+|+..+.. +...++ ..+|++++|+|.++..+. ..|...+.+ ..+|+++|+||+|+...
T Consensus 54 ~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~-----~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 54 INLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE-----MEKKVILAMTAIDEAKK 125 (258)
T ss_dssp EEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT-----TTCCEEEEEECHHHHHH
T ss_pred EEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh-----cCCCEEEEEECcCCCCc
Confidence 99999999987753 445565 479999999999986543 346555554 36888899999988641
Q ss_pred ccccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 217 HRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 217 ~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
T Consensus 126 -------------------------------------------------------------------------------- 125 (258)
T 3a1s_A 126 -------------------------------------------------------------------------------- 125 (258)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+.+. .+.+.+++.+|+|+++|||++|.||+++|+.+++.++
T Consensus 126 -----------~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 126 -----------TGMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp -----------TTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------cchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 1111 1245566777899999999999999999999998654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=175.01 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=48.6
Q ss_pred eeeeccccccchh------HhHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~------~~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+. .+...++. .+|++++|||+++..+ ...|...+.+ ..+|+++|+||+|+..
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 9999999998875 56677776 5999999999988644 3456666554 3688899999998863
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=169.92 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=55.3
Q ss_pred eeeeccccccchh----------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFP----------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~----------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|+..+. .....++..+|++++|+|+++..+++....|++.+.. ..+|+++|+||+|+.
T Consensus 61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 8999999986543 5677888999999999999999899888888877765 368999999999986
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=169.48 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=47.3
Q ss_pred eeeeccccccchhH----------hHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPA----------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~----------~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|...+.. +...++ ..+|++++|+|+++...+..+..| +.+ ..+|+++|+||+|
T Consensus 50 ~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~-----~~~pvilv~NK~D 121 (256)
T 3iby_A 50 IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE-----LGKPVVVALNMMD 121 (256)
T ss_dssp EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT-----SCSCEEEEEECHH
T ss_pred EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH-----cCCCEEEEEEChh
Confidence 89999999877653 566677 789999999999987655544333 322 3688999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 122 l~~ 124 (256)
T 3iby_A 122 IAE 124 (256)
T ss_dssp HHH
T ss_pred cCC
Confidence 864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=167.15 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=61.9
Q ss_pred eeeeccccccchhHhHHhhhhh----cCeEEEEEeCC-ChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~----~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+......++.. ++++++|||++ ++.+|..+..|+..+..... ....+|+++|+||+|+..
T Consensus 57 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp CEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 9999999999999888888887 89999999999 88999999999888766532 125799999999999975
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-20 Score=169.23 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=45.8
Q ss_pred eeeeccccccchh----------HhHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFP----------AMRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~----------~~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|+..+. .+...++ ..+|++++|+|.++..... .|...+.+. .+|+++|+||+|
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~-----~~p~ivv~NK~D 123 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLEL-----GIPCIVALNMLD 123 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH-----TCCEEEEEECHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc-----CCCEEEEEECcc
Confidence 8899999988765 2333343 6899999999999865443 344444443 589999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 124 l~~ 126 (274)
T 3i8s_A 124 IAE 126 (274)
T ss_dssp HHH
T ss_pred chh
Confidence 864
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=165.07 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=77.9
Q ss_pred eeeeccccccchhH------hHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+|+..+.. +...++ .++|++++|+|.++.. ....|...+.+. ..+|+++|+||+|+...
T Consensus 52 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 52 FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM----EVKNIILVLNKFDLLKK 124 (271)
T ss_dssp EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT----TCCSEEEEEECHHHHHH
T ss_pred EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc----CCCCEEEEEEChhcCcc
Confidence 88999999887765 566666 5799999999998853 333444444443 23889999999998641
Q ss_pred ccccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 217 HRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 217 ~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+
T Consensus 125 -~------------------------------------------------------------------------------ 125 (271)
T 3k53_A 125 -K------------------------------------------------------------------------------ 125 (271)
T ss_dssp -H------------------------------------------------------------------------------
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
.+.. ..+.+++.+|+++++|||++|.|++++|+.+.+.+.
T Consensus 126 ------------~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 126 ------------GAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ------------TCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ------------ccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 0011 135566677899999999999999999999998764
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=159.51 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=47.7
Q ss_pred eeeecccc----------ccchhHhHHhhhhh---cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCG----------DLQFPAMRRLSIAT---AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~~~~~---~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+| ++.|..+...++.. +|++++|+|..+..+.. -..|+..+.. ..+|+++|+||+
T Consensus 81 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-----~~~p~i~v~nK~ 154 (223)
T 4dhe_A 81 AHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-----TGKPIHSLLTKC 154 (223)
T ss_dssp EEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-----GCCCEEEEEECG
T ss_pred EEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-----cCCCEEEEEecc
Confidence 99999999 45556777777777 67799999998754422 2334444443 368999999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 155 Dl~~ 158 (223)
T 4dhe_A 155 DKLT 158 (223)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9875
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=176.04 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=43.1
Q ss_pred eeeeccccccchhHhH--------HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMR--------RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~--------~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+.... ..++..+|++++|||++++.+++.+..+...+... ...|+++|+||+|+..
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAA 357 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCT
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCC
Confidence 8999999987765432 34678899999999999998887655544434333 3689999999999875
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=167.62 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=56.4
Q ss_pred eeeecccccc----chhHhHHhhhhh---cCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDL----QFPAMRRLSIAT---AHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~----~~~~~~~~~~~~---~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|.. .+..+...++++ ++++++|+|+++ +.+++.+..|..++..+.......|+++|+||+|+.
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 8999999953 344565666555 999999999998 789999999999998875333568888888888876
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 288 ~ 288 (342)
T 1lnz_A 288 E 288 (342)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=159.62 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=58.6
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|++.|......++..+|++++|+|+++..++.....|+..+.... ..|+++|+||+|+.+
T Consensus 76 ~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 76 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSC
T ss_pred eEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccc
Confidence 39999999999999999999999999999999999877777777777666552 358999999999975
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-19 Score=172.28 Aligned_cols=63 Identities=27% Similarity=0.235 Sum_probs=49.1
Q ss_pred eeeeccccccchhHh-------HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAM-------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~-------~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|..+ ...++.++|++++|||+... +....|+..+.+. .+|+++|+||+|+..
T Consensus 85 l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM-----EIPFVVVVNKIDVLG 154 (423)
T ss_dssp EEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-----TCCEEEECCCCTTTT
T ss_pred EEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-----CCCEEEEEeCcCCCC
Confidence 899999999887644 45578899999999999333 3345677777654 689999999999875
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=159.30 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=52.5
Q ss_pred eeeeccccccchh---------HhHHhhhhhcCeEEEEEeCCChh--hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFP---------AMRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~---------~~~~~~~~~~~~~i~v~dv~~~~--s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|...+. .........+|++++|+|+++.. +++....|+..+.... ...|+++|+||+|+
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl 292 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDV 292 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTT
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc---CCCCEEEEEECccc
Confidence 8999999975432 11223445689999999999887 7888888998888764 37899999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 293 ~~ 294 (357)
T 2e87_A 293 AD 294 (357)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=157.39 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred eeeeccccccc--------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHH-HHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~--------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~-~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..+ +......+++.+|++++|||++++.+.. ..|+ +.+.... +..|+++|+||+|+.+
T Consensus 57 l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV---GKVPILLVGNKLDAAK 131 (301)
T ss_dssp EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred EEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc---CCCCEEEEEECcccCC
Confidence 89999999876 4566777889999999999998875544 3444 4444332 4689999999999874
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=167.43 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=48.5
Q ss_pred eeeecccccc-chh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL-QFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~-~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. .+. .....++..+|++++|||++++.+++..+-| +.+ ...|+++|+||+|+..
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-------TTSSEEEEEEECSSCC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-------cCCCEEEEEECccccc
Confidence 8899999987 553 2345678999999999999998888764332 222 3678999999999864
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-18 Score=173.22 Aligned_cols=65 Identities=29% Similarity=0.361 Sum_probs=52.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++.........|. .+.. ..+|+++++||+|+.+
T Consensus 54 i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~-~~~~-----~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQ-HAKD-----AHVPIVLAINKCDKAE 118 (537)
T ss_dssp CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHH-HHHT-----TTCCEEECCBSGGGTT
T ss_pred EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCcEEEEEecccccc
Confidence 899999999999999999999999999999999866555444332 2222 4689999999999975
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=163.05 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=39.6
Q ss_pred eeeeccccccchhHhH--------HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMR--------RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~--------~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|...+.... ..++..+|++++|||.+++.++.. ..|+..+ ...|+++|+||+|+..
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-------~~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-------KHRPLILVMNKIDLVE 344 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-------TTSCEEEEEECTTSSC
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-------cCCcEEEEEECCCCCc
Confidence 8899999986654332 235778999999999998776655 3444443 2369999999999975
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=153.53 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCC----------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++||++|++.++.++..||++++++|+|||++ +..+++....|++.+.... ...++|++|+|||+|
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~-~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKD 245 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG-GGTTCEEEEEEECHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh-ccCCceEEEEEECch
Confidence 44999999999999999999999999999999665 5667777777777776543 235799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 246 L~~ 248 (327)
T 3ohm_A 246 LLE 248 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 985
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=143.17 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred eeeeccccccchhHhHHhhhhh----cCeEEEEEeCC-ChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~----~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+...+..++.. +|++++|||++ +..++..+..|+..+..... ....+|+++|+||+|+.+
T Consensus 93 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp CSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 9999999999998777777776 89999999999 89999999998887765532 225799999999999986
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=153.11 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=49.8
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|.......+..+|++++|+|+++ +.+++.+..| ... ...|+++++||+|+.+
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l----~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL----GIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT----TCCCEEEEEECTTSSC
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc----CCCeEEEEEEccCCCC
Confidence 39999999999998877777788899999999984 4566655433 222 2357999999999975
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-16 Score=148.81 Aligned_cols=68 Identities=28% Similarity=0.352 Sum_probs=50.9
Q ss_pred eeeecccccc---------chhHhHHhhhhhcCeEEEEEeCCChh--hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDL---------QFPAMRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~---------~~~~~~~~~~~~~~~~i~v~dv~~~~--s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.. .|.... ..+..+|.+++|+|++++. .++.+..|.+.+.... ..+.|+++|+||+|+
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDK 304 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGG
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCC
Confidence 8899999962 233332 2478899999999999887 6777777777666553 246889999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 305 ~~ 306 (364)
T 2qtf_A 305 IN 306 (364)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-17 Score=159.29 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=17.9
Q ss_pred HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 314 FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 314 ~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
....++...+++||+|||++|.| ++.|..+++..
T Consensus 198 ~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 198 RILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 44555666789999999999999 88888877754
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=154.35 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=50.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++++|+|+++ +.+++.+. .+.. ..+|+++++||+|+.+
T Consensus 75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~-----~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH-----FNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH-----TTCCBCEEEECTTSSC
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH-----cCCCEEEEEECCCccc
Confidence 9999999999999888889999999999999988 55555543 2222 3578899999999874
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=163.42 Aligned_cols=62 Identities=26% Similarity=0.435 Sum_probs=50.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++ +.+++.+. .+.. ..+|+++++||+|+.+
T Consensus 53 i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~-----~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA-----AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH-----TTCCEEEEEECSSSST
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh-----cCceEEEEEEeccccc
Confidence 8999999999999998888999999999999988 34444332 2221 4689999999999975
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=141.31 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=44.7
Q ss_pred eeeecccccc-----------chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDL-----------QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.. .+......++.++|++++|+|+++.... ...|+..+.+..+.....|+++|+||+|+
T Consensus 80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 8999999943 3344444556678999999998764431 22344444433222134689999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 158 ~~ 159 (239)
T 3lxx_A 158 LG 159 (239)
T ss_dssp C-
T ss_pred CC
Confidence 74
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=155.98 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=58.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|..... ..+|+++++||+|+.+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccc
Confidence 449999999999999999999999999999999999888888887766543 4789999999999975
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=149.43 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=63.4
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCC----------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++||++|++.|+.++..||++++++|+|||++ +..+++....|++.+.... ...++|++|+|||+|
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~piiLv~NK~D 239 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGAVKLIFLNKMD 239 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTSEEEEEEECHH
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCCeEEEEEECch
Confidence 44999999999999999999999999999999998 7788888888888877643 236799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 240 L~~ 242 (340)
T 4fid_A 240 LFE 242 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 985
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=157.79 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=58.5
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|..... ..+|+++++||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccc
Confidence 449999999999999999999999999999999999888888777766543 4689999999999975
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=157.22 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=48.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHH--HHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l--~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......+++.+|++++|+|+++..++..+ ..+..+...........|+++|+||+|+.+
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 399999999999999999999999999999999987554332 111111111111113356999999999875
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=143.08 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc-cCCce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT-YSDRY 39 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~-f~~~~ 39 (373)
....++|+|+|++|||||||+|++++.. |...+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~ 52 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL 52 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC
Confidence 3457899999999999999999999765 44333
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=158.21 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=55.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|+.+|......+++.+|++++|+|.++..+......|. .+.. ..+|+++++||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~-----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL-----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT-----TTCCEEEEEECTTSCC
T ss_pred EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH-----cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999999999987777766663 2332 4689999999999964
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=145.67 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|.......+..+|++++|+|+++ +.+++.+..| ... ...|+++++||+|+.+
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~----~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII----GQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH----TCCCEEEEEECGGGSC
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc----CCCcEEEEEECccCCC
Confidence 39999999999998877777888999999999985 4566655433 222 2357899999999975
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=149.66 Aligned_cols=69 Identities=23% Similarity=0.133 Sum_probs=49.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhh---HHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES---FQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++.+|++++|+|+++... |+....+.+.+..... ..+| +++++||+|+..
T Consensus 97 ~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 9999999999999999999999999999999987532 2211122222221111 2456 899999999863
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-16 Score=155.38 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=53.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|++.|..++..+++.+|++++|||+++ +.+++.+..+ .. ..+|+++++||+|+..
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH-----TTCCEEEEEECGGGST
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH-----cCCeEEEEeccccccc
Confidence 8999999999999998888999999999999999 7777765432 22 4789999999999974
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=153.23 Aligned_cols=70 Identities=24% Similarity=0.221 Sum_probs=54.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc---cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~---~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++.+|++++|+|+++ .+|+.+..|..+.++... .....|+++++||+|+.+
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 9999999999999989999999999999999999 788876655443333221 112246888899999864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=143.56 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=42.9
Q ss_pred eeeecccccc-chh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL-QFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~-~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. ... .....++..+|++++|+|.++ +.....|+...... ...|+++++||.|+..
T Consensus 58 i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp EEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS----SSSCEEEEEESTTTCC
T ss_pred EEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh----cCCCEEEEEECcccCc
Confidence 8899999987 322 223455678899999999876 33333344322221 4688899999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-17 Score=150.64 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=57.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh-hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||+ +++|..+++.+++++|++++|||++++. +++.+..|+..+.. ..+|++|||||+|+.+
T Consensus 65 ~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 65 GVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp EEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred EEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 899999 8999999999999999999999999987 79999999987764 4689999999999874
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=142.94 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=13.7
Q ss_pred hhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 320 QRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 320 ~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
...+++++++||++|.|++++++.+.+.
T Consensus 174 ~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 174 QEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHTTCCCCCC-----------CHHHHHT
T ss_pred HHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 3467889999999999999999999874
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-16 Score=145.49 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=47.9
Q ss_pred eeeecccccc-------------chhHhHHhhhhhcCeEE-EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDL-------------QFPAMRRLSIATAHAFL-LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.+|||+|.. .+..+...++..+++++ +|+|.++..+......|...+.. ...|+++|+||
T Consensus 127 l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~i~V~NK 201 (299)
T 2aka_B 127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-----QGQRTIGVITK 201 (299)
T ss_dssp EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT-----TCSSEEEEEEC
T ss_pred ceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC-----CCCeEEEEEEc
Confidence 9999999963 35567778888888777 68999875544443344444322 46899999999
Q ss_pred ccccc
Q psy16673 211 SDMTS 215 (373)
Q Consensus 211 ~Dl~~ 215 (373)
+|+.+
T Consensus 202 ~Dl~~ 206 (299)
T 2aka_B 202 LDLMD 206 (299)
T ss_dssp GGGSC
T ss_pred cccCC
Confidence 99975
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=149.73 Aligned_cols=67 Identities=21% Similarity=0.047 Sum_probs=50.8
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......++..+|++++|+|+++....+ ...|+..+... ...|+++|+||+|+.+
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~----~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL----GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT----TCCEEEEEEECTTTTT
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEEcCcCCc
Confidence 3899999999999988888999999999999998864322 33344433332 2236899999999874
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=146.52 Aligned_cols=65 Identities=23% Similarity=0.146 Sum_probs=52.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++++|+|+++.... ....|+..+.. ..+| +++++||+|+.+
T Consensus 77 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~-----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 77 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ-----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH-----TTCCCEEEEEECGGGCC
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH-----cCCCEEEEEEECccccC
Confidence 89999999999999888999999999999999886543 33455555543 3577 889999999973
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=144.88 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=33.3
Q ss_pred eeeeccccccccchh--hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 295 FLLVYSTTCLESFQS--VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~--v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++|+||+|+...+. +..++++.+++..+++||||||++| |++++|..+++..
T Consensus 158 iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 158 IVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 347777777755443 3456778888888999999999999 9999999999855
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=130.14 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~ 44 (373)
-.+..+|+++|++|||||||+|++++..|...+.++.+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G 60 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG 60 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-----------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc
Confidence 34568999999999999999999997665444444444
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=145.85 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=50.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++.+|++++|+|+++....+....| ..+.. ..+| +++++||+|+.+
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCS
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCC
Confidence 89999999999988888889999999999999985444433333 33332 3577 689999999874
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=139.17 Aligned_cols=62 Identities=5% Similarity=-0.093 Sum_probs=48.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEecc-cccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGN-KSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgn-K~Dl 213 (373)
+.+|||+|+++|......+++.+|++++|+| . ...+....+|+..+... .+|. +++.| |+|+
T Consensus 62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~-----~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL-----GFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT-----TCCEEEEEECCGGGS
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc-----CCCeEEEEEEeccCC
Confidence 9999999999998888888999999999999 4 44455556666555443 4565 77777 9998
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-16 Score=153.39 Aligned_cols=70 Identities=26% Similarity=0.140 Sum_probs=43.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......+++.+|++++|+|+++. .+|+....|.+.+..... ..+| +++++||+|+.+
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPS 195 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTT
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCC
Confidence 389999999999998888889999999999999986 345433344444433221 3566 899999999963
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=151.71 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=49.2
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......+++.+|++++|+|+++.. +|.....+.+.+.... .....|+++|+||+|+.+
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTTCCEEEEEEECTTTTT
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcCCCeEEEEEecccccc
Confidence 3999999999999999999999999999999998742 1111112222222221 112345899999999874
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=143.51 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=54.1
Q ss_pred eeeeccccc----------cchhHhHH-hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGD----------LQFPAMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~----------~~~~~~~~-~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|+ +.|..++. .+++.+|++++|||+++..+++.+ .|...+.. ...|+++|+||+|+
T Consensus 225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-----~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-----AGKAVVIVVNKWDA 298 (436)
T ss_dssp EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGG
T ss_pred EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-----cCCcEEEEEECccC
Confidence 889999997 66776655 478899999999999999888876 47666654 46899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 299 ~~ 300 (436)
T 2hjg_A 299 VD 300 (436)
T ss_dssp SC
T ss_pred CC
Confidence 76
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=149.51 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=49.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hHH---HHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQ---SVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~---~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++++|+|+++.. +|+ ....++..+.. ..+| +++++||+|+.+
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-----TTCCEEEEEEECGGGGT
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-----cCCCeEEEEEEcccccc
Confidence 999999999999999999999999999999998752 332 12222222222 2455 889999999873
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=132.23 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=52.2
Q ss_pred eeeeccccccchhHhHHhhhh---------hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIA---------TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~---------~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|++++......+++ ++|++++|++++... +... ..|++.+.+..+.....|+++|+||+|+.
T Consensus 86 l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 899999999888655444443 789999999997755 4443 46888887765432335899999999986
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 165 ~ 165 (262)
T 3def_A 165 P 165 (262)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-15 Score=150.57 Aligned_cols=62 Identities=26% Similarity=0.223 Sum_probs=38.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCcc-EEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl 213 (373)
+.+|||+|+++|......++..+|++|+|+|+++. .+.+.+. .+.. ..+| +++|+||+|+
T Consensus 257 i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~----~~~~-----lgip~iIvviNKiDl 327 (592)
T 3mca_A 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY----LLRA-----LGISEIVVSVNKLDL 327 (592)
T ss_dssp --CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH----HHHH-----SSCCCEEEEEECGGG
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH----HHHH-----cCCCeEEEEEecccc
Confidence 89999999999988888888999999999999853 2333221 1221 2454 8899999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 328 ~~ 329 (592)
T 3mca_A 328 MS 329 (592)
T ss_dssp GT
T ss_pred cc
Confidence 74
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=138.03 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=96.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCC----------ccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~----------~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+.+|||+|++.|+.++..++++++++|+|||+++ ..++++...|.+.+.......++|++
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii------- 264 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII------- 264 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE-------
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE-------
Confidence 4457899999999999999999999999999999999 56788888888888775544456655
Q ss_pred cceeeeeccccccccch---------------hhhhhHHHHHhh-----------hcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLESFQ---------------SVKCYFEEIREQ-----------RQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r---------------~v~~~~~~~~a~-----------~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
|+|||+|+...+ .++.+++..++. ..++.|+||||++|.||+++|+.++
T Consensus 265 -----Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 265 -----LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp -----EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred -----EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 999999996544 356677777775 4678999999999999999999999
Q ss_pred HHh
Q psy16673 346 TLS 348 (373)
Q Consensus 346 ~~~ 348 (373)
+.+
T Consensus 340 ~~i 342 (353)
T 1cip_A 340 DVI 342 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=141.64 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=52.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+++|||+|+++|......+++.+|++++|+|.++.-..... .|+..+.. ..+|+++++||+|+.
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-----ccCCEEEEecCCchh
Confidence 3499999999999999999999999999999998776544433 34444443 368999999999985
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=137.13 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=92.1
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecC----------CccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt----------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+++|||+|+++|+.+++.++++++++++|||++ +..+|++...|.+.+.+.....++|++
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii------- 254 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM------- 254 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE-------
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE-------
Confidence 345789999999999999999999999999999999 888999999999888776544456655
Q ss_pred cceeeeeccccccccchh--h-------------------hhhHHHHHhhh----------------cCCeEEEeccCCC
Q psy16673 292 AHAFLLVYSTTCLESFQS--V-------------------KCYFEEIREQR----------------QDFQLLECSAKDN 334 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~--v-------------------~~~~~~~~a~~----------------~~~~~~E~SAktg 334 (373)
|||||+|+...+. + +.+++..++.. ..+.++||||++|
T Consensus 255 -----LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 255 -----LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp -----EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred -----EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 9999999865443 1 23566666332 2356799999999
Q ss_pred cCHHHHHHHHHHHh
Q psy16673 335 YNIKEVFRTFLTLS 348 (373)
Q Consensus 335 ~nv~elf~~i~~~~ 348 (373)
.||+++|+.+++.+
T Consensus 330 ~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 330 KLVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999854
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=150.12 Aligned_cols=65 Identities=23% Similarity=0.143 Sum_probs=51.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++|+|+|+++....+ ...|+..+... .+| +++++||+|+.+
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l-----gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV-----GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH-----TCSCEEEEEECCTTCC
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc-----CCCeEEEEEeeccccc
Confidence 999999999999988888999999999999998864333 33344444432 567 789999999874
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-14 Score=126.20 Aligned_cols=55 Identities=18% Similarity=0.056 Sum_probs=43.0
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhh--cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQR--QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~--~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++|+||+|+...+.+..+....++.. .++++++|||++|.|++++|+.+.+.+
T Consensus 166 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 166 ADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp CSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3459999999977655555555555543 368999999999999999999998854
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=140.04 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=56.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|+.+|...+..+++.+|++++|+|.++..++.....|.. +.. ..+|+++++||+|+..
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK-----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTT
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH-----cCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999888887776654 332 4789999999999975
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=135.04 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=51.2
Q ss_pred eeeecccc----------ccchhHhHHh-hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCG----------DLQFPAMRRL-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~-~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+| ++.|..++.. ++..+|++++|+|+++..+. ....|...+.+ ...|+++|+||+|+
T Consensus 245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~-----~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE-----AGKAVVIVVNKWDA 318 (456)
T ss_dssp EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH-----TTCEEEEEEECGGG
T ss_pred EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH-----cCCCEEEEEEChhc
Confidence 89999999 7888877664 78899999999999885442 23345555554 46899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 319 ~~ 320 (456)
T 4dcu_A 319 VD 320 (456)
T ss_dssp SC
T ss_pred CC
Confidence 85
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-13 Score=136.39 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=55.2
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|.++.........|.. +.. ..+|+++++||+|+..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~-----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK-----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEeCCCccc
Confidence 349999999999999999999999999999999998766665555532 222 4689999999999975
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-14 Score=135.07 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=93.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCC----------ccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~----------~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
..+++|||+|+++|+.+++.++++++++|+|||+++ ..+|++...|.+.+.......++|++
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii-------- 288 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI-------- 288 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE--------
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE--------
Confidence 457899999999999999999999999999999999 99999999999998876544456655
Q ss_pred ceeeeeccccccccchh---hh---------------------------hhHHHHHh-----hh--------cCCeEEEe
Q psy16673 293 HAFLLVYSTTCLESFQS---VK---------------------------CYFEEIRE-----QR--------QDFQLLEC 329 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~---v~---------------------------~~~~~~~a-----~~--------~~~~~~E~ 329 (373)
|||||+|+...+. ++ .++++.++ .. .++.++||
T Consensus 289 ----LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 289 ----LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp ----EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred ----EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 9999999966554 31 24455442 21 35778999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|..+.+.+
T Consensus 365 SA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9e-13 Score=136.37 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=56.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|+.+|......+++.+|++++|+|.++..++.....|.. +.. ..+|+++++||+|+..
T Consensus 77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTT
T ss_pred EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999877777766653 333 3689999999999975
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=135.30 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=50.9
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+++|......+++.+|++++|+|.++...... ..+.... ....+|+++++||+|+..
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~-~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVT-RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHH-TTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHH-HHcCCCEEEEEcCcCCcc
Confidence 39999999999999888889999999999999987543222 2222222 114789999999999975
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=139.34 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred eeeeccccccc---hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ---FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||||... .......++..+|++++|+|.++..+...+..|.+.+.. ...|+++|+||+|+..
T Consensus 176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~-----~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG-----RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT-----SCCCEEEEEECGGGGG
T ss_pred eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh-----hCCCEEEEEECccccc
Confidence 89999999654 345666788999999999999998888877777654432 3568999999999975
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=129.14 Aligned_cols=65 Identities=23% Similarity=0.097 Sum_probs=44.5
Q ss_pred eeeeccccccchhH-----------hH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPA-----------MR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-----------~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|...+.. .+ ..++..+|++++|+|+++..++... .+...+.. ...|+++|+||+|
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----~~~~~ilv~NK~D 303 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----RGRASVVVFNKWD 303 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGG
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECcc
Confidence 78999999743322 11 3467889999999999987666542 23333332 4689999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 304 l~~ 306 (439)
T 1mky_A 304 LVV 306 (439)
T ss_dssp GST
T ss_pred CCC
Confidence 975
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=126.37 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=49.0
Q ss_pred eeeeccccccchhHhHH-------hh--hhhcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRR-------LS--IATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~-------~~--~~~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|.+++..+.. .+ ...+|++++|||++.. ++... ..|+..+....+.....|+++|+||+|+.
T Consensus 89 l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 99999999877643211 11 2379999999998763 34433 36888777664322237999999999986
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 168 ~ 168 (270)
T 1h65_A 168 P 168 (270)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-14 Score=137.51 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=24.2
Q ss_pred eeeccccccccchhhhh--hHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 296 LLVYSTTCLESFQSVKC--YFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~--~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+|+||+|+...+.+.. ......+...++++|++||+++.|++++|..+...
T Consensus 171 IlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 171 IPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp EEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred EEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 36666666655555544 55566667779999999999999999999888763
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=130.95 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=49.1
Q ss_pred eeeeccccccc----hhHhHHhh---hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLS---IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~---~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|... +..+...+ ...++.++.++|++ ...++.+..|..++..+.......|.++++||.|+..
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 88999999743 22232233 34589999999998 6778888888888776542223567778888888764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=131.87 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=48.2
Q ss_pred eeeeccccccch-------------hHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCGDLQF-------------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+|...+ ..+...|+.+++++++|++..+..... ..|+..+..... ...|+++|+||+
T Consensus 138 l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~--~~~~~i~V~nK~ 213 (360)
T 3t34_A 138 LTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP--SGDRTFGVLTKI 213 (360)
T ss_dssp EEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT--TCTTEEEEEECG
T ss_pred eEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc--cCCCEEEEEeCC
Confidence 999999998776 667888899999999998875543222 344444444321 456888889999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 214 Dl~~ 217 (360)
T 3t34_A 214 DLMD 217 (360)
T ss_dssp GGCC
T ss_pred ccCC
Confidence 9874
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=131.16 Aligned_cols=115 Identities=15% Similarity=0.041 Sum_probs=87.9
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCC----------ccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~----------~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+.+|||+|++.|+.++..++.+++++|+|||+++ ..+|++...|.+.+.......++|++
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI------- 272 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII------- 272 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE-------
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE-------
Confidence 3457899999999999999999999999999999999 78999999998888776544456655
Q ss_pred cceeeeeccccccccch----------------hhhhhHHHHHh--------h---hcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLESFQ----------------SVKCYFEEIRE--------Q---RQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r----------------~v~~~~~~~~a--------~---~~~~~~~E~SAktg~nv~elf~~i 344 (373)
|++||+|+...+ .++.+++..++ . ..++.|++|||++|.||+++|+.+
T Consensus 273 -----Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 273 -----LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp -----EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred -----EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 999999996544 25666776654 2 356889999999999999999999
Q ss_pred HHHh
Q psy16673 345 LTLS 348 (373)
Q Consensus 345 ~~~~ 348 (373)
.+.+
T Consensus 348 ~~~i 351 (362)
T 1zcb_A 348 KDTI 351 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=122.30 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=44.3
Q ss_pred eeeeccccccc-------------hhHhHHhhhhhcCeEEEEEeCCChhhH-HHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDLQ-------------FPAMRRLSIATAHAFLLVYSTTCLESF-QSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~dv~~~~s~-~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.+|||+|... +......++..+|++++|+|..+.... .....+...+. ....|+++|+||
T Consensus 133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-----~~~~~~i~v~NK 207 (315)
T 1jwy_B 133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-----PEGKRTIGVITK 207 (315)
T ss_dssp EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-----SSCSSEEEEEEC
T ss_pred cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-----CCCCcEEEEEcC
Confidence 99999999753 456677788999999999997443211 11112222222 146889999999
Q ss_pred ccccc
Q psy16673 211 SDMTS 215 (373)
Q Consensus 211 ~Dl~~ 215 (373)
+|+..
T Consensus 208 ~Dl~~ 212 (315)
T 1jwy_B 208 LDLMD 212 (315)
T ss_dssp TTSSC
T ss_pred cccCC
Confidence 99875
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=131.66 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCC
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSD 37 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~ 37 (373)
...++|+|+|++|||||||+|+|++..|.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p 58 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLP 58 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 345799999999999999999999887753
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=114.35 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++++++||++|.|++++|+.+.+.+
T Consensus 187 ~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 187 RAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp TSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999865
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-12 Score=118.99 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=91.2
Q ss_pred eeeeccccccchh----Hh---HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccc
Q psy16673 145 VDILDTCGDLQFP----AM---RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHH 217 (373)
Q Consensus 145 ~~i~D~~g~~~~~----~~---~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~ 217 (373)
+++.||+|...-. .+ .....+.+|++++|.|..++. ...+....++..........|..++.||.|...-
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi- 197 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGI- 197 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCE-
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhh-
Confidence 8899999953211 11 223467899999999999863 3334444555554433345677888999997541
Q ss_pred cccccccceeeeccCCCCCc-----hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 218 RAVHLEDVDILDTCGDLQFP-----AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 218 r~~~~~~~~~~dtag~~~~~-----~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
.+..+....... .+...+.-...-++++.+++. +++ .+.+ .... ...
T Consensus 198 --------~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~e----ddl---~d~~-~~~~------------~~~ 249 (376)
T 4a9a_A 198 --------SITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATV----DDL---IDVL-EASS------------RRY 249 (376)
T ss_dssp --------EEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCH----HHH---HHHH-TTTT------------CEE
T ss_pred --------hhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCH----HHH---HHHH-HHHH------------hhc
Confidence 111111111111 112222222222333333332 111 1111 1111 123
Q ss_pred ceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
.+++++.||.|.... ++.+.+.+. -.++++|+..+.|++++.+.+.++..+.
T Consensus 250 ~p~i~v~nKid~~~~-----eele~l~~~--~~~~~is~~~e~gLd~Li~~~y~~L~Li 301 (376)
T 4a9a_A 250 MPAIYVLNKIDSLSI-----EELELLYRI--PNAVPISSGQDWNLDELLQVMWDRLNLV 301 (376)
T ss_dssp ECEEEEEECGGGSCH-----HHHHHHTTS--TTEEECCTTTCTTHHHHHHHHHHHHCCE
T ss_pred cceEEEEecccccCH-----HHHHHHhcc--cchhhhhhhhcccchhHHHHHHHHcCCc
Confidence 345699999997432 222222222 2479999999999999999988876443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=125.29 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=33.3
Q ss_pred eeeeeccccccc----hhHhHH---hhhhhcCeEEEEEeCCCh-----------hhHHHHHHHHHHHHHH
Q psy16673 144 YVDILDTCGDLQ----FPAMRR---LSIATAHAFLLVYSTTCL-----------ESFQSVKCYFEEIREQ 195 (373)
Q Consensus 144 ~~~i~D~~g~~~----~~~~~~---~~~~~~~~~i~v~dv~~~-----------~s~~~l~~~~~~i~~~ 195 (373)
.+.+|||+|... +..+.. .+++.+|++++|+|+++. +.++.+..|..++...
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 399999999854 233333 346889999999999886 6777777777666543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=114.34 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=35.7
Q ss_pred eeeeccccccchh----HhH---HhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy16673 145 VDILDTCGDLQFP----AMR---RLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIR 193 (373)
Q Consensus 145 ~~i~D~~g~~~~~----~~~---~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~ 193 (373)
+++|||+|..++. .+. ..+++.+|++++|+|+++. +.++.+..|..++.
T Consensus 68 i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~ 133 (363)
T 1jal_A 68 MEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELA 133 (363)
T ss_dssp EEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHH
T ss_pred EEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHH
Confidence 8999999998763 232 2357899999999999862 45666666665553
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-12 Score=119.83 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=62.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----------hhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++||++|++.|+.++..++.+++++|+|||+++ ..+++....|++.+.... ...++|++|+|||+|
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~-~~~~~piiLv~NK~D 271 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFTDTSIILFLNKKD 271 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc-cccCCcEEEEEECcC
Confidence 449999999999999999999999999999999999 567888888888887643 225799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 272 L~~ 274 (353)
T 1cip_A 272 LFE 274 (353)
T ss_dssp HHH
T ss_pred chh
Confidence 964
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-12 Score=131.93 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|..... ..+|+++++||+|+..
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCeEEEEECCCcch
Confidence 449999999999999999999999999999999999988888776754332 4689999999999974
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=111.74 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=66.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|... ........+|.+++|+|.+....++.+.. . -. ..+.++|.||+|+
T Consensus 174 ~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~------~~------------~~p~ivVlNK~Dl 229 (355)
T 3p32_A 174 VILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---G------VL------------ELADIVVVNKADG 229 (355)
T ss_dssp EEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---T------SG------------GGCSEEEEECCCG
T ss_pred EEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---h------Hh------------hcCCEEEEECCCC
Confidence 44778888433 12233578999999999887665543321 0 01 1235599999999
Q ss_pred ccchhhhhh---HHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 305 ESFQSVKCY---FEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 305 ~~~r~v~~~---~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
......... ..+.+.. .+++|+++|||++|.||+++++.+.+....
T Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 230 EHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 765443221 1122211 236899999999999999999999986543
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=123.41 Aligned_cols=66 Identities=30% Similarity=0.380 Sum_probs=53.5
Q ss_pred eeeeccccccc-----------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQ-----------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|... |......++..+|++++|+|+++....+....|++.+.. ...|+++|+||+|+
T Consensus 156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-----HEDKIRVVLNKADM 230 (550)
T ss_dssp CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----CGGGEEEEEECGGG
T ss_pred EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----cCCCEEEEEECCCc
Confidence 89999999865 667777889999999999999886555666667666543 35789999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 231 ~~ 232 (550)
T 2qpt_A 231 VE 232 (550)
T ss_dssp SC
T ss_pred cC
Confidence 85
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=113.57 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.3
Q ss_pred cceeeeeccccccc--cc-hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLE--SF-QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~--~~-r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~ 343 (373)
.+++++++||.|.. +. +.+..+..+.+++..|++++++||+++.++.++++.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 34566999999853 21 134455667777778899999999996666665544
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=104.99 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=22.9
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++++++||++|.|++++|+.+.+..
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHh
Confidence 5899999999999999999998864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=110.88 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+.+++.|||++|.|++++++.|.+...
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=108.81 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=80.2
Q ss_pred cCCCCCchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh
Q psy16673 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS 309 (373)
Q Consensus 231 ag~~~~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~ 309 (373)
..++++..+.+.+++++|++++|||++++. +++.+..|...+.. .++|+ ++|+||+|+.+.+.
T Consensus 64 ~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~------------ilV~NK~DL~~~~~ 127 (302)
T 2yv5_A 64 EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEP------------VIVFNKIDLLNEEE 127 (302)
T ss_dssp EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEE------------EEEECCGGGCCHHH
T ss_pred eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCE------------EEEEEcccCCCccc
Confidence 347888888888999999999999999986 89988998876654 23454 49999999977665
Q ss_pred hh-hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 310 VK-CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 310 v~-~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+. .+....+.+..|++++++||++|.|++++|+.+.
T Consensus 128 v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 128 KKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 44 4455566667789999999999999999997754
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-11 Score=114.88 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=63.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCC----------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++|||+|++.|+.++..++++++++|+|||++ +..+|+.+..|++.+.+.. ...++|++|+|||+|
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFMLFLNKFD 261 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEEEEECHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEEEEECcc
Confidence 44999999999999999999999999999999998 7889999999998887643 226799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 262 L~~ 264 (354)
T 2xtz_A 262 IFE 264 (354)
T ss_dssp HHH
T ss_pred hhh
Confidence 975
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=111.59 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=64.7
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----------hhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++|||+|++.|+.++..++++++++|+|||+++ ..+|+.+..|++.+.... ...++|++|+|||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEEEEEChh
Confidence 349999999999999999999999999999999999 899999999999887643 236799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 296 L~~ 298 (402)
T 1azs_C 296 LLA 298 (402)
T ss_dssp HHH
T ss_pred hhh
Confidence 975
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=106.37 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.9
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
..+++++||++|.|++++++.+.+.+.
T Consensus 234 ~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 234 QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=100.79 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=60.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.||+++..|+..+....+. ++|++ |||||+|
T Consensus 63 ~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~-~~pii------------lVgNK~D 129 (216)
T 4dkx_A 63 RLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS-DVIIM------------LVGNKTD 129 (216)
T ss_dssp EEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SSEEE------------EEEECTT
T ss_pred EEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC-CCeEE------------EEeeccc
Confidence 4679999999999999999999999999999999999999999999999877653 45554 9999998
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.4e-09 Score=103.39 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=54.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++||||+.+|..-....++-+|++++|+|....-.-....-|.. +.+ ..+|++++-||.|...
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~-----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM-----RATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSCC
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH-----hCCceEEEEecccchh
Confidence 49999999999999999999999999999999987655555555533 333 4799999999999875
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-09 Score=107.53 Aligned_cols=108 Identities=13% Similarity=0.006 Sum_probs=68.1
Q ss_pred cceeeeccCCCCC-------------chhhhhcc-ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccc
Q psy16673 224 DVDILDTCGDLQF-------------PAMRRLSI-ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSI 289 (373)
Q Consensus 224 ~~~~~dtag~~~~-------------~~~~~~s~-~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~ 289 (373)
++.++||+|...- ..+...+. ..++.+++|.|++....-++...+.+.+.. .+.|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~p------- 219 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQR------- 219 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSS-------
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCC-------
Confidence 4678899996551 12233333 567889999999987665554344444432 2345
Q ss_pred cccceeeeeccccccccchhhhhhHHH--HHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 290 ATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 290 ~~~~~~ilvgnK~Dl~~~r~v~~~~~~--~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+++|.||+|+...........+ .+....+ .+++.+||++|.|++++++.+.+.
T Consensus 220 -----vIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 220 -----TIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -----EEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -----EEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 4599999998654332211111 1111123 467889999999999999999874
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-09 Score=105.63 Aligned_cols=66 Identities=26% Similarity=0.277 Sum_probs=52.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++.||||+.+|.......++-+|++++|+|....-.-+...-|.. +.+ ..+|.+++-||.|...
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~-----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK-----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH-----HTCSCEECCEECCSSS
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH-----cCCCeEEEEecccccc
Confidence 39999999999999999999999999999999977543333333433 333 3688999999999875
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=103.20 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=56.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----------hhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++|||+|++.++..+..++.+++++|+|||+++ ..+++....|++.+.+.. ...++|++|+|||+|
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~~~piILv~NK~D 279 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIILFLNKTD 279 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhCCCCEEEEEEChh
Confidence 349999999999999999999999999999999999 789999999998887643 225799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 280 L~~ 282 (362)
T 1zcb_A 280 LLE 282 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-09 Score=100.71 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=23.0
Q ss_pred eeeeccccccchhH-------hHHhhhhhcCeEEEEEeCCChhhHH
Q psy16673 145 VDILDTCGDLQFPA-------MRRLSIATAHAFLLVYSTTCLESFQ 183 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-------~~~~~~~~~~~~i~v~dv~~~~s~~ 183 (373)
+++||++|...+.. ....+++.+|++++|+|..+..++.
T Consensus 88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 89999999876543 3456788999999999998765543
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-09 Score=97.81 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=80.9
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecC----------CccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt----------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+++|||+|+++|+.++..++++++++|+|||++ +..++++...|.+.+.......++|++
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pii------- 232 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKL------- 232 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEE-------
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEE-------
Confidence 456889999999999999999999999999999999 788899888888888776554556655
Q ss_pred cceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 292 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+|||+|+...+........-+..- .-+.+++++++.+.+..
T Consensus 233 -----Lv~NK~DL~~eki~~~~l~~~fp~y----------~g~~~~e~a~~~i~~~f 274 (340)
T 4fid_A 233 -----IFLNKMDLFEEKLTKVPLNTIFPEY----------TGGDNAVMGAQYIQQLF 274 (340)
T ss_dssp -----EEEECHHHHHHHHHHSCGGGTCTTC----------CCTTCHHHHHHHHHHHH
T ss_pred -----EEEECchhhhhhcCcchHHHhhhhh----------cCCCCHHHHHHHHHHhc
Confidence 9999999987665433322222111 12347999999998865
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=95.53 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=23.5
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
..+++.+||++|.|++++++.|.+...
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-07 Score=95.57 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=54.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++.||||+-+|..-....++-+|++++|.|+...-.-+...-|..... ..+|++++-||.|...
T Consensus 85 ~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK------YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH------HTCCEEEEEECSSSTT
T ss_pred EEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEccccccC
Confidence 459999999999999999999999999999999987544444444544333 3699999999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=84.70 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=89.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+|||+|++.|..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||+|+
T Consensus 62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~Dl 129 (181)
T 1fzq_A 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL------------IFANKQDL 129 (181)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE------------EEEECTTS
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEECcCc
Confidence 568999999999999999999999999999999999999999988877654433455655 99999999
Q ss_pred ccchhhh---hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVK---CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~---~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+.+. ...+...+...+++|+||||++|.||+++|+.+++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 7654331 1111112234567899999999999999999999854
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=82.63 Aligned_cols=112 Identities=7% Similarity=0.047 Sum_probs=92.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+.......++|++ +|+||+|+
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 113 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL------------VFANKQDL 113 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE------------EEEECcCC
Confidence 569999999999999999999999999999999999999999988887765443445544 99999999
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
... +.+....+...+...+++|+||||++|.||+++|+.+++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp TTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 664 34444444444555678999999999999999999999854
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-08 Score=84.88 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=88.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+++..|..++.+.....++|++ +|+||+
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~ 136 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL------------ILGNKI 136 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE------------EEEECT
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE------------EEEECC
Confidence 46789999999999999999999999999999999999999999999888776544456655 999999
Q ss_pred ccccchhhhhhHHHHHhh-----------------hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQ-----------------RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~-----------------~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+.. .++.++.+.+.. ..+++|+||||++|.||+++|+.+++.
T Consensus 137 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 137 DRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred Cccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 9975 344444444433 245789999999999999999999863
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-08 Score=84.35 Aligned_cols=118 Identities=10% Similarity=0.088 Sum_probs=94.3
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-------CCCCchhhccccccce
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-------FQFPAMRRLSIATAHA 294 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-------~~~p~v~~~~~~~~~~ 294 (373)
...+.+|||+|++.|..++..++++++++++|||++++.+|+++..|+..+...... .++|+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi----------- 130 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF----------- 130 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-----------
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-----------
Confidence 345789999999999999999999999999999999999999999988887765321 14554
Q ss_pred eeeeccccccccc---hhhhhhHHHHH-hhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESF---QSVKCYFEEIR-EQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~---r~v~~~~~~~~-a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
++|+||+|+... +.+....+... ++..+++|+||||++|.||+++|+.|++.+...
T Consensus 131 -ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 131 -LFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp -EEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -EEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 499999999766 33333333222 256789999999999999999999999965433
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-08 Score=85.13 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=65.7
Q ss_pred cCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhc-c---CCCCCchhhccccccceeeeecccc-ccc
Q psy16673 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-Q---DFQFPAMRRLSIATAHAFLLVYSTT-CLE 305 (373)
Q Consensus 231 ag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~-~---~~~~p~v~~~~~~~~~~~ilvgnK~-Dl~ 305 (373)
.||.+++.++..||.+++++|+|.|.+|+.-++ .+....++...- . ..++|++ +.+||. |+.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLL------------VlANKqqDlp 176 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLL------------VLSCISQGDV 176 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEE------------EEEEESSTTS
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEE------------EEeCCCcCcc
Confidence 478899999999999999999999999987665 333222333221 1 1456766 999996 564
Q ss_pred cchhhhhhHHHHHh--h-hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 306 SFQSVKCYFEEIRE--Q-RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 306 ~~r~v~~~~~~~~a--~-~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
..-. ..+..+.+. . ...+.+..|||+||+|+.|-++++++.+
T Consensus 177 ~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 177 KRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp CBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 3321 122222222 1 2456789999999999999999999743
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-08 Score=80.05 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=92.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+.......++|++ +|+||+|+
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 120 (171)
T 1upt_A 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV------------VFANKQDM 120 (171)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEE------------EEEECCCC
Confidence 468999999999999999999999999999999999999999988877765443445544 99999999
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
... +.+....+...+...+++|++|||++|.||+++|+.+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 665 34444444455566788999999999999999999999854
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-08 Score=83.04 Aligned_cols=115 Identities=6% Similarity=0.064 Sum_probs=88.0
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+++|..++..++++++++++|||++++.+|+.+..|+..+.......++|++ +|+||
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 126 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL------------IFANK 126 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE------------EEEEC
Confidence 356789999999999999999999999999999999999999999999888876443445554 99999
Q ss_pred cccccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+..... +....+.......+++|++|||++|.||+++|+.+++.+
T Consensus 127 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 127 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 99965322 211111111234578999999999999999999999865
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.9e-08 Score=82.92 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=91.8
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.+..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK 128 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL------------IFANK 128 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEE------------EEEeC
Confidence 355789999999999999999999999999999999999999999998888775443445554 99999
Q ss_pred cccccchhhhhhHHHHH----hhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQSVKCYFEEIR----EQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~----a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+...+.+. +..+.+ +...+++|++|||++|.||+++|+.+++.+
T Consensus 129 ~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 129 QDLPGALSCN-AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp TTSTTCCCHH-HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCCCCHH-HHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9997654322 112222 234578999999999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-08 Score=83.57 Aligned_cols=115 Identities=6% Similarity=0.012 Sum_probs=89.7
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+.......++|++ +|+||
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pii------------lv~NK 139 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL------------VFANK 139 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEE------------EEEEC
Confidence 345789999999999999999999999999999999999999999988888765444445554 99999
Q ss_pred cccccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+... +.+....+...+...+++|+||||++|.||+++|+.+++.+
T Consensus 140 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 999664 34444444444555678999999999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-08 Score=83.78 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=59.2
Q ss_pred cceeeeccCCCCCch-hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.+.. +++.+++.++++++|||++++.+|+++..|+.++.......++|++ +||||+
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~ 140 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI------------LVGNKS 140 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE------------EEEECT
T ss_pred EEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEeech
Confidence 356899999998875 7888899999999999999999999999999998877654456655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 141 D 141 (195)
T 3cbq_A 141 D 141 (195)
T ss_dssp T
T ss_pred h
Confidence 9
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-08 Score=81.78 Aligned_cols=113 Identities=7% Similarity=0.080 Sum_probs=90.8
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.|..+...++++++++++|||++++.+|+++..|+..+.......++|+ ++|+||
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi------------ilv~NK 131 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL------------LIFANK 131 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEE------------EEEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeE------------EEEEEC
Confidence 35678999999999999999999999999999999999999999998888876543344554 499999
Q ss_pred cccccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+... +.+....+.......+++|++|||++|.||+++|+.|++
T Consensus 132 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 132 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred CCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 999653 223322222333456789999999999999999999986
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-07 Score=87.33 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+..+|.|+|++|||||||+|++++..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 357999999999999999999997544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.7e-08 Score=82.31 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=91.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.+..++..+++.++++++|||++++.+|+++..|..++.+.....++|++ +|+||+
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~ 134 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV------------ILGNKI 134 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE------------EEEECT
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEE------------EEEECC
Confidence 55789999999999999999999999999999999999999999999888776544456655 999999
Q ss_pred ccccchhhhhhHHHHHhh------------hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQ------------RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~------------~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.. .++.++.+.... ..+++|+||||++|.||+++|+.+++
T Consensus 135 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 135 DAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp TSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 9975 334444444332 35689999999999999999999986
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.7e-08 Score=89.88 Aligned_cols=115 Identities=11% Similarity=0.004 Sum_probs=95.1
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecC----------CccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt----------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+++|||+|+++|+.++..++++++++++|||++ +..++++...|.+.+.......++|++
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii------- 238 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI------- 238 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE-------
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE-------
Confidence 345789999999999999999999999999999766 667777777777777665544456655
Q ss_pred cceeeeeccccccccch----------------hhhhhHHHHH----------hhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLESFQ----------------SVKCYFEEIR----------EQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r----------------~v~~~~~~~~----------a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
|+|||+|+...+ .++.+++..+ +...++.++||||+++.||+++|..+.
T Consensus 239 -----L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 239 -----LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp -----EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred -----EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 999999997766 4677778777 556778899999999999999999999
Q ss_pred HHh
Q psy16673 346 TLS 348 (373)
Q Consensus 346 ~~~ 348 (373)
+.+
T Consensus 314 ~~I 316 (327)
T 3ohm_A 314 DTI 316 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.6e-08 Score=80.76 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=45.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~D 117 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII------------LVGNKSD 117 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE------------EEEECTT
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEeccc
Confidence 4679999999999999999999999999999999999999999999999887655566765 9999999
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.9e-08 Score=81.33 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=58.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|..++.+.....++|++ +|+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~D 122 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM------------LVGNKKD 122 (181)
T ss_dssp EEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE------------EEEECTT
T ss_pred EEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887665566765 9999999
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=80.69 Aligned_cols=113 Identities=9% Similarity=0.071 Sum_probs=90.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeecc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..+.+|||+|++.+..++..++++++++++|||++++.+|+++..|+..+...... .++|++ +|+|
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii------------lv~n 134 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL------------FFAN 134 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE------------EEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE------------EEEe
Confidence 56789999999999999999999999999999999999999999998888775433 345554 9999
Q ss_pred ccccccchhhhhhHHHHHh---h--hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCLESFQSVKCYFEEIRE---Q--RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a---~--~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+..... .++.+... . ..+++|++|||++|.||+++|+.|.+.++
T Consensus 135 K~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 135 KMDLRDAVT--SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CcCcccCCC--HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999965432 22222222 1 34789999999999999999999998653
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.2e-08 Score=81.73 Aligned_cols=67 Identities=36% Similarity=0.546 Sum_probs=60.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.+.....++|++ +|+||+|
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~D 134 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI------------LVANKVD 134 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE------------EEEECTT
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECCC
Confidence 567999999999999999999999999999999999999999999999887665566765 9999999
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=81.30 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=92.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.+..++..+++.++++++|||++++.+|+++..|...+.......++|++ +|+||+|+
T Consensus 68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 135 (189)
T 2x77_A 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL------------IFANKQDL 135 (189)
T ss_dssp EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE------------EEEECTTS
T ss_pred EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE------------EEEECCCC
Confidence 468999999999999999999999999999999999999999888877765443445554 99999999
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
... +.+....+...+...+++|++|||++|.||+++|+.+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 665 34444444444556678999999999999999999999865
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-08 Score=82.32 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=92.1
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+.......++|++ +|+||
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 133 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL------------VLGNK 133 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE------------EEEEC
Confidence 345789999999999999999999999999999999999999999988888765443456655 99999
Q ss_pred cccccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+... +.+........+...+++|++|||++|.||+++|+.|++.+
T Consensus 134 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 134 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999654 22222233333345678999999999999999999999854
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=79.06 Aligned_cols=113 Identities=30% Similarity=0.386 Sum_probs=102.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 119 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI------------LVGNKCD 119 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE------------EEEECTT
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE------------EEEECcc
Confidence 4779999999999999999999999999999999999999999999988887655566655 9999999
Q ss_pred cccchhhhhhHHHHHhhhc-CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQ-DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~-~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+.+.+..++.+.+++.+ +++|++|||++|.|++++|+.+++.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 9988888888899999887 89999999999999999999999854
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=83.75 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=62.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhh-HHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS-VKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~-v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.+|++ +..|+..+....+ ++|++ +||||+
T Consensus 76 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pii------------lv~nK~ 141 (214)
T 3q3j_B 76 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP--STRVL------------LIGCKT 141 (214)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT--TSEEE------------EEEECG
T ss_pred EEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 47799999999999999999999999999999999999999 6889999988753 45554 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 142 Dl~~~~ 147 (214)
T 3q3j_B 142 DLRTDL 147 (214)
T ss_dssp GGGGCH
T ss_pred hhccch
Confidence 997653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=78.54 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=62.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.++++++|||++++.+++++..|...+..... .++|+ ++|+||+|
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi------------ilv~nK~D 119 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIII------------ALVGNKID 119 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEE------------EEEEECGG
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC-CCCcE------------EEEEECCC
Confidence 478999999999999999999999999999999999999999999988887653 24454 49999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
+....
T Consensus 120 l~~~~ 124 (170)
T 1ek0_A 120 XLQEG 124 (170)
T ss_dssp GGGSS
T ss_pred ccccc
Confidence 87653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=79.69 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=54.5
Q ss_pred cceeeeccCCCCCch-hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.+.. +++.+++.++++++|||++++.+|+.+..|+.++.......++|++ +|+||+
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~ 119 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI------------LVGNKS 119 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE------------EEEECT
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE------------EEeeCc
Confidence 466999999999876 7778899999999999999999999999999999887765567766 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 120 D 120 (169)
T 3q85_A 120 D 120 (169)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=82.18 Aligned_cols=68 Identities=26% Similarity=0.491 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 140 (201)
T 3oes_A 73 HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV------------LVGNKAD 140 (201)
T ss_dssp EEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE------------EEEECTT
T ss_pred EEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887665566765 9999999
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=78.18 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..+...+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 120 (168)
T 1u8z_A 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 120 (168)
T ss_dssp EEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE------------EEEECGG
T ss_pred EEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887765566765 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 121 l 121 (168)
T 1u8z_A 121 L 121 (168)
T ss_dssp G
T ss_pred c
Confidence 6
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=82.17 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=59.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+..... .++|+ ++|+||+|
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~pi------------ilv~NK~D 145 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQ------------LLIGNKSD 145 (201)
T ss_dssp EEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC-TTCEE------------EEEEECTT
T ss_pred EEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCE------------EEEEECCc
Confidence 577999999999999999999999999999999999999999999999887653 23454 49999999
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-07 Score=82.76 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+..... ..++|++ +|+||
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lv~nK 141 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV------------LVANK 141 (208)
T ss_dssp EEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE------------EEEEC
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE------------EEEEC
Confidence 467999999999999999999999999999999999999999999999988765 2345554 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 142 ~Dl 144 (208)
T 2yc2_C 142 TDL 144 (208)
T ss_dssp C--
T ss_pred ccc
Confidence 994
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=89.93 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=70.8
Q ss_pred CCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh---
Q psy16673 233 DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS--- 309 (373)
Q Consensus 233 ~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~--- 309 (373)
.+.|..+.+.+++.++.+++|+|+++.. ..|..++.+..+ +.| +++|+||+|+.....
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~~p------------~ilV~NK~DL~~~~~~~~ 116 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--NNK------------VLLVGNKADLIPKSVKHD 116 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--SSC------------EEEEEECGGGSCTTSCHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--CCc------------EEEEEEChhcCCcccCHH
Confidence 4677888888899999999999999853 345556655433 345 449999999965432
Q ss_pred hhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 310 VKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 310 v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~ 347 (373)
...++.+..++..|+ +++++||++|.|++++++.+.+.
T Consensus 117 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 117 KVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 122333444666777 89999999999999999999764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=80.04 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=86.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.+..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~ 129 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL------------VFANKQ 129 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE------------EEEECT
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEE------------EEEECC
Confidence 45789999999999999999999999999999999999999999988887765444455554 999999
Q ss_pred ccccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.... .+....+.......+++|++|||++|.||+++|+.+++.+
T Consensus 130 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 130 DQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 986542 2222221111233467899999999999999999999865
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=83.42 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=56.9
Q ss_pred ceeeeccCCCC-CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQ-FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~-~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++||+|++. +..+++.+++.++++++|||++++.||+.+..|...+.+.....++|++ |||||+|
T Consensus 89 l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pii------------lVgNK~D 156 (211)
T 2g3y_A 89 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII------------LVGNKSD 156 (211)
T ss_dssp EEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE------------EEEECTT
T ss_pred EEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEE------------EEEEChH
Confidence 46899999887 5667888899999999999999999999999999888765444456655 9999999
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=80.63 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=53.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecC------CccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
.+.+|||+|++.|..+++.++++++++++|||++ +..+|+.+..|+.++.. ...++|++ +
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~pii------------l 140 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIV------------I 140 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEE------------E
T ss_pred EEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEE------------E
Confidence 3569999999999999999999999999999999 55667777777666622 22345554 9
Q ss_pred ecccccc
Q psy16673 298 VYSTTCL 304 (373)
Q Consensus 298 vgnK~Dl 304 (373)
|+||+|+
T Consensus 141 v~NK~Dl 147 (198)
T 3t1o_A 141 QVNKRDL 147 (198)
T ss_dssp EEECTTS
T ss_pred EEEchhc
Confidence 9999995
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-07 Score=77.23 Aligned_cols=68 Identities=35% Similarity=0.496 Sum_probs=61.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..++..+++.++++++|||++++.+++.+..|..++.+.....++|++ +|+||+|
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 119 (167)
T 1kao_A 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI------------LVGNKVD 119 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE------------EEEECGG
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECCc
Confidence 3779999999999999999999999999999999999999999999988887665566655 9999999
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-07 Score=80.86 Aligned_cols=67 Identities=27% Similarity=0.419 Sum_probs=59.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+|
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iilv~NK~D 142 (201)
T 2ew1_A 76 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVI------------TVLVGNKID 142 (201)
T ss_dssp EEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECGG
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECCC
Confidence 477999999999999999999999999999999999999999999998887653 2344 459999999
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=80.35 Aligned_cols=71 Identities=27% Similarity=0.331 Sum_probs=61.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.+|+++ ..|...+....+ ++|+ ++||||+
T Consensus 56 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pi------------ilv~nK~ 121 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKM------------LLVGCKS 121 (184)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCEE------------EEEEECG
T ss_pred EEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCE------------EEEEEcc
Confidence 468999999999999999999999999999999999999999 679888877643 3554 4999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 122 Dl~~~~ 127 (184)
T 1m7b_A 122 DLRTDV 127 (184)
T ss_dssp GGGGCH
T ss_pred hhhcch
Confidence 997543
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-07 Score=87.54 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=51.7
Q ss_pred cceeeeccCCCCCch---hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhc-cCCCCCchhhccccccceeeeec
Q psy16673 224 DVDILDTCGDLQFPA---MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 224 ~~~~~dtag~~~~~~---~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~-~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
.+++|||+||++|.. .++.++++++++++|||++++ .++....|.+.+.... ...++|++ ++|
T Consensus 47 ~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipil------------lvg 113 (331)
T 3r7w_B 47 DLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIE------------VLI 113 (331)
T ss_dssp CEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEE------------EEC
T ss_pred EEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEE------------EEE
Confidence 467999999999964 478999999999999999998 4444444543333221 11245655 999
Q ss_pred cccccccc
Q psy16673 300 STTCLESF 307 (373)
Q Consensus 300 nK~Dl~~~ 307 (373)
||+|+...
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999654
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-07 Score=79.94 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=61.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|+++|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 67 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 132 (194)
T 2atx_A 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP--NVPFL------------LIGTQI 132 (194)
T ss_dssp EEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECT
T ss_pred EEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 4679999999999999999999999999999999999999998 69888887644 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 133 Dl~~~~ 138 (194)
T 2atx_A 133 DLRDDP 138 (194)
T ss_dssp TSTTCH
T ss_pred hhcccc
Confidence 997654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=79.46 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=48.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... ++|+ ++|+||+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ilv~nK~D 124 (183)
T 2fu5_C 58 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEK------------MILGNKCD 124 (183)
T ss_dssp EEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEE------------EEEEEC--
T ss_pred EEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECcc
Confidence 4679999999999999999999999999999999999999999999988876432 3454 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 125 l 125 (183)
T 2fu5_C 125 V 125 (183)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-07 Score=80.55 Aligned_cols=71 Identities=24% Similarity=0.465 Sum_probs=60.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+++..|+..+...... ++|++ +|+||+|
T Consensus 78 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~pii------------lv~NK~D 144 (199)
T 2p5s_A 78 VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE-TVPIM------------LVGNKAD 144 (199)
T ss_dssp EEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEE------------EEEECGG
T ss_pred EEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCCEE------------EEEECcc
Confidence 4779999999999999999999999999999999999999999999888775432 35544 9999999
Q ss_pred cccc
Q psy16673 304 LESF 307 (373)
Q Consensus 304 l~~~ 307 (373)
+...
T Consensus 145 l~~~ 148 (199)
T 2p5s_A 145 IRDT 148 (199)
T ss_dssp GHHH
T ss_pred cccc
Confidence 8644
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-07 Score=78.97 Aligned_cols=73 Identities=23% Similarity=0.394 Sum_probs=61.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 122 (182)
T 3bwd_D 57 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIV------------LVGTKL 122 (182)
T ss_dssp -CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEE------------EEEECH
T ss_pred EEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEech
Confidence 4669999999999999999999999999999999999999998 59888887643 45655 999999
Q ss_pred ccccchhh
Q psy16673 303 CLESFQSV 310 (373)
Q Consensus 303 Dl~~~r~v 310 (373)
|+...+.+
T Consensus 123 Dl~~~~~~ 130 (182)
T 3bwd_D 123 DLRDDKQF 130 (182)
T ss_dssp HHHTCHHH
T ss_pred hhhcCccc
Confidence 99776554
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-07 Score=80.24 Aligned_cols=72 Identities=29% Similarity=0.417 Sum_probs=62.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++.+++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i------------lv~nK~ 134 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP--KAPII------------LVGTQS 134 (201)
T ss_dssp EEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS--SSCEE------------EEEECG
T ss_pred EEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECH
Confidence 4669999999999999999999999999999999999999997 69988887654 46655 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 135 Dl~~~~~ 141 (201)
T 2q3h_A 135 DLREDVK 141 (201)
T ss_dssp GGGGCHH
T ss_pred hhhhchh
Confidence 9976543
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=78.48 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=60.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|..++.+.....++|++ +|+||+|
T Consensus 58 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~D 125 (181)
T 2fn4_A 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV------------LVGNKAD 125 (181)
T ss_dssp EEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE------------EEEECGG
T ss_pred EEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999988766555556655 9999999
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=80.55 Aligned_cols=68 Identities=26% Similarity=0.442 Sum_probs=60.6
Q ss_pred cceeeeccCCCCCc-hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFP-AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~-~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|. .+...+++.++++++|||++++.+|+.+..|..++.......++|++ +|+||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~ 137 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI------------LVGNKC 137 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE------------EEEECT
T ss_pred EEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECc
Confidence 47899999999998 88889999999999999999999999999999999887655556655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 138 D 138 (189)
T 1z06_A 138 D 138 (189)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=80.50 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=54.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|++.|..+ ..+++.++++++|||++++.+|+++..|+.++...... .++|++ +||||
T Consensus 70 ~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lv~nK 136 (187)
T 3c5c_A 70 HLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL------------LLGNK 136 (187)
T ss_dssp EEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE------------EEEEC
T ss_pred EEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE------------EEEEC
Confidence 4678999999999876 56899999999999999999999999999988876431 345555 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 137 ~D 138 (187)
T 3c5c_A 137 LD 138 (187)
T ss_dssp GG
T ss_pred cc
Confidence 99
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-07 Score=78.45 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=62.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.++++++|||++++.+|+.+..|..++.......++|++ +|+||+|
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 134 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 134 (187)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE------------EEEECGG
T ss_pred EEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887765566765 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 135 l 135 (187)
T 2a9k_A 135 L 135 (187)
T ss_dssp G
T ss_pred c
Confidence 6
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-07 Score=80.60 Aligned_cols=64 Identities=27% Similarity=0.274 Sum_probs=55.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|. ++++++++++|||++++.+|+++..|+..+.......++|++ +||||+|
T Consensus 68 ~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 130 (184)
T 3ihw_A 68 LLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV------------LVGTQDA 130 (184)
T ss_dssp EEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE------------EEEECTT
T ss_pred EEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 36789999999886 788899999999999999999999999999887654456655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 131 l 131 (184)
T 3ihw_A 131 I 131 (184)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-07 Score=78.89 Aligned_cols=68 Identities=32% Similarity=0.532 Sum_probs=59.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.|..++..++..++++++|||++++.+|+.+..|...+.......++|++ +|+||+|+
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------~v~nK~Dl 121 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV------------LVGNKCDL 121 (189)
T ss_dssp EEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE------------EEEECTTS
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECccC
Confidence 668999999999999999999999999999999999999999999999887666667766 99999995
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=78.57 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=62.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..+...+++.++++++|||++++.+++++..|...+.......++|++ +|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV------------LCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE------------EEEECT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECc
Confidence 35789999999999999999999999999999999999999999999999887654556655 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 138 Dl 139 (195)
T 3bc1_A 138 DL 139 (195)
T ss_dssp TC
T ss_pred cc
Confidence 96
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-07 Score=78.53 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=89.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+++..|..++...... .++|+ ++|+|
T Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~------------ilv~n 126 (182)
T 1ky3_A 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF------------VILGN 126 (182)
T ss_dssp EEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCE------------EEEEE
T ss_pred EEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcE------------EEEEE
Confidence 4679999999999999999999999999999999999999999999988876532 34554 49999
Q ss_pred cccc-ccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCL-ESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl-~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+ ...+.+..++++.++. ..+++|++|||++|.||+++|+.+++.+.
T Consensus 127 K~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 127 KIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp CTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999 4556778888888887 66799999999999999999999998653
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-07 Score=81.59 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=61.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 123 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP--NVPIV------------LVGTKL 123 (212)
T ss_dssp EEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEE------------EEEECH
T ss_pred EEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEeCH
Confidence 5779999999999999999999999999999999999999997 69988887654 45655 999999
Q ss_pred ccccchhh
Q psy16673 303 CLESFQSV 310 (373)
Q Consensus 303 Dl~~~r~v 310 (373)
|+...+.+
T Consensus 124 Dl~~~~~~ 131 (212)
T 2j0v_A 124 DLRDDKGY 131 (212)
T ss_dssp HHHTCHHH
T ss_pred HhhhCccc
Confidence 99776553
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=79.61 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=62.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 130 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 130 (206)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE------------EEEECTT
T ss_pred EEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEeccC
Confidence 4679999999999999999999999999999999999999999999999887765567765 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 131 l 131 (206)
T 2bov_A 131 L 131 (206)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-07 Score=79.03 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=53.7
Q ss_pred cceeeeccCCCCCchhh---hhccccccEEEEEEecCCc--cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 224 DVDILDTCGDLQFPAMR---RLSIATAHAFLLVYSTTCL--ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~---~~s~~~a~~~i~v~dvt~~--~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
.+.+|||+|++.|..+. ..++++++++++|||++++ .++..+..|..++....+ ++|+ ++|
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~--~~pi------------ilv 135 (196)
T 3llu_A 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP--DMNF------------EVF 135 (196)
T ss_dssp CEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT--TCEE------------EEE
T ss_pred EEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC--CCcE------------EEE
Confidence 35699999999998887 8999999999999999998 455555555555433222 4554 499
Q ss_pred ccccccccch
Q psy16673 299 YSTTCLESFQ 308 (373)
Q Consensus 299 gnK~Dl~~~r 308 (373)
|||+|+....
T Consensus 136 ~nK~Dl~~~~ 145 (196)
T 3llu_A 136 IHKVDGLSDD 145 (196)
T ss_dssp EECGGGSCHH
T ss_pred EeccccCchh
Confidence 9999986543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-07 Score=77.95 Aligned_cols=68 Identities=26% Similarity=0.431 Sum_probs=52.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+++++..|...+..... .++|+ ++|+||+|
T Consensus 61 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi------------ilv~nK~D 127 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL------------MLLGNKVD 127 (180)
T ss_dssp EEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE------------EEEEECCS
T ss_pred EEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcE------------EEEEECcc
Confidence 477999999999999999999999999999999999999999999998887654 34554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 128 l 128 (180)
T 2g6b_A 128 S 128 (180)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=77.72 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=53.0
Q ss_pred cceeeeccCCCC--CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQ--FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~--~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|++. +..+...+++.++++++|||++++.+|+.+..|...+.+.....++|++ +|+||
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii------------lv~NK 120 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII------------LVGNK 120 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE------------EEEEC
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE------------EEEEC
Confidence 467999999988 6777888999999999999999999999999999988876544456655 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 121 ~Dl 123 (175)
T 2nzj_A 121 ADL 123 (175)
T ss_dssp TTC
T ss_pred hhh
Confidence 996
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=81.16 Aligned_cols=70 Identities=27% Similarity=0.343 Sum_probs=60.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++ ..|..++....+ ++|+ ++||||+
T Consensus 77 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~--~~pi------------ilv~nK~ 142 (205)
T 1gwn_A 77 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKM------------LLVGCKS 142 (205)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCEE------------EEEEECG
T ss_pred EEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCE------------EEEEech
Confidence 478999999999999999999999999999999999999999 679888877643 3554 4999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 143 Dl~~~ 147 (205)
T 1gwn_A 143 DLRTD 147 (205)
T ss_dssp GGGGC
T ss_pred hhccc
Confidence 99754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-07 Score=82.09 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=95.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+++..|+..+..... ++|++ +|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i------------lv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIV------------LCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST--TCCEE------------EEEECT
T ss_pred EEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECC
Confidence 3477999999999999999999999999999999999999999999999988754 45655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.+.+.. .+...++...+++|++|||++|.||+++|+.+++.+
T Consensus 130 Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 130 DIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred cccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99765432 356677888899999999999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-07 Score=79.96 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=61.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+++++..|+.++.......++|++ +|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i------------lv~nK~ 131 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM------------LVGNKI 131 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE------------EEEECT
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE------------EEEECC
Confidence 34779999999999999999999999999999999999999999999998876554455654 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 132 Dl 133 (195)
T 1x3s_A 132 DK 133 (195)
T ss_dssp TS
T ss_pred cC
Confidence 97
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-07 Score=77.32 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=58.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+++..|+.++...... .+.| .+++|+||
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-----------~iilv~nK 124 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQP-----------LVALVGNK 124 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCC-----------EEEEEEEC
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCC-----------eEEEEEEc
Confidence 35779999999999999999999999999999999999999999999888775431 1223 24599999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 125 ~D 126 (178)
T 2hxs_A 125 ID 126 (178)
T ss_dssp GG
T ss_pred cc
Confidence 99
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-07 Score=82.21 Aligned_cols=105 Identities=6% Similarity=-0.005 Sum_probs=70.4
Q ss_pred cCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHH--HHHhhc-cCCCCCchhhccccccceeeeecccc-cccc
Q psy16673 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE--EIREQR-QDFQFPAMRRLSIATAHAFLLVYSTT-CLES 306 (373)
Q Consensus 231 ag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~--~i~~~~-~~~~~p~v~~~~~~~~~~~ilvgnK~-Dl~~ 306 (373)
.||...+.++..||.+++++|+|+|.+|++.++...++.+ .+.... ...++|++ +.+||. |+..
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLL------------VfANKkQDlp~ 262 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL------------VLSCISQGDVK 262 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEE------------EEEEESSTTSC
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEE------------EEeCCcccccC
Confidence 5889999999999999999999999999987662222221 122111 12356666 999974 7743
Q ss_pred chhhhhhHHHHHh--h-hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 307 FQSVKCYFEEIRE--Q-RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 307 ~r~v~~~~~~~~a--~-~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.-. ..+..+.+. . ...+.+..|||+||+|+.|-++++++.+
T Consensus 263 Ams-~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 263 RMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp BCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCC-HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 322 122222222 1 2356789999999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-07 Score=78.49 Aligned_cols=112 Identities=25% Similarity=0.346 Sum_probs=99.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|.+.+...... ++| +++|+||+|
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~-~~p------------iilV~NK~D 142 (192)
T 2il1_A 76 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE-DAE------------LLLVGNKLD 142 (192)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECGG
T ss_pred EEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECcc
Confidence 4779999999999999999999999999999999999999999998888776442 345 459999999
Q ss_pred cccchhhhhhHHHHHhhhc-CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQ-DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~-~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+..++++.+++.. +++|++|||++|.||+++|+.|++.+
T Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp GGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9988888888888998874 89999999999999999999999854
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=75.90 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=59.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..++..+++.++++++|||++++.+++.+..|...+...... ++|+ ++|+||+
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~i------------ilv~nK~ 121 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP-NIVI------------ALSGNKA 121 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEE------------EEEEECG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCcE------------EEEEECc
Confidence 34779999999999999999999999999999999999999999999888876432 4554 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 122 Dl 123 (170)
T 1r2q_A 122 DL 123 (170)
T ss_dssp GG
T ss_pred cC
Confidence 96
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-07 Score=76.11 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=98.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|++.+..++..+++.++++++|||++++.+++.+..|..++...... .++|+ ++|+|
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~------------i~v~n 124 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF------------VILGN 124 (177)
T ss_dssp EEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCE------------EEEEE
T ss_pred EEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcE------------EEEEE
Confidence 4779999999999999999999999999999999999999999999988876542 34554 49999
Q ss_pred ccccccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 301 TTCLESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+|+. .+.+..++++.++. ..+++|++|||++|.||+++|+.+++.+
T Consensus 125 K~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 125 KIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99997 66677788888887 6789999999999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-07 Score=78.79 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=53.8
Q ss_pred ceeeeccCCCC-CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQ-FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~-~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++||+|++. +..+++.+++.++++++|||++++.||+.+..|...+.+.....++|++ +||||+|
T Consensus 58 l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii------------lV~NK~D 125 (192)
T 2cjw_A 58 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII------------LVGNKSD 125 (192)
T ss_dssp EEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE------------EEEECTT
T ss_pred EEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE------------EEEechh
Confidence 45789988876 5667888899999999999999999999999999888776444456655 9999999
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4e-07 Score=77.52 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|...+..... .++|+ ++|+||+|
T Consensus 60 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi------------ilv~nK~D 126 (186)
T 2bme_A 60 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVI------------ILCGNKKD 126 (186)
T ss_dssp EEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE------------EEEEECGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcE------------EEEEECcc
Confidence 577999999999999999999999999999999999999999999988877644 24554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 127 l 127 (186)
T 2bme_A 127 L 127 (186)
T ss_dssp G
T ss_pred c
Confidence 6
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-07 Score=85.86 Aligned_cols=112 Identities=7% Similarity=0.045 Sum_probs=87.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+.......++|++ +|+||+|+
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lV~NK~Dl 278 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL------------VFANKQDL 278 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE------------EEEECccC
Confidence 468999999999999999999999999999999999999999988777665544456655 99999998
Q ss_pred ccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.. .+....+...+...+++|++|||++|.||+++|+.|++.+
T Consensus 279 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 279 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 6543 3444444444455678999999999999999999999864
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-07 Score=78.08 Aligned_cols=71 Identities=24% Similarity=0.420 Sum_probs=61.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 119 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKL 119 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TSCEE------------EEEECH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC--CCCEE------------EEeEcc
Confidence 4669999999999999999999999999999999999999998 58888887654 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 120 Dl~~~~ 125 (186)
T 1mh1_A 120 DLRDDK 125 (186)
T ss_dssp HHHTCH
T ss_pred cccccc
Confidence 997654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-07 Score=77.78 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=60.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..+...+++.++++++|||++++.+|+.+..|+..+...... ++|+ ++|+||+|
T Consensus 66 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~------------ilv~nK~D 132 (196)
T 3tkl_A 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-NVNK------------LLVGNKCD 132 (196)
T ss_dssp EEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEE------------EEEEECTT
T ss_pred EEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECcc
Confidence 4779999999999999999999999999999999999999999999998876543 4454 59999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 133 l 133 (196)
T 3tkl_A 133 L 133 (196)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-07 Score=80.71 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=57.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+..... .++|+ ++|+||+|
T Consensus 63 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~-~~~pi------------ilv~nK~D 129 (223)
T 3cpj_B 63 KAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAV------------GLIGNKSD 129 (223)
T ss_dssp EEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC---CEE------------EEEECCGG
T ss_pred EEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeE------------EEEEECcc
Confidence 467999999999999999999999999999999999999999999998877643 23454 49999999
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-07 Score=74.49 Aligned_cols=70 Identities=31% Similarity=0.499 Sum_probs=62.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..++..++..++++++|||++++.+++++..|...+.......++|++ +|+||+|
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i------------iv~nK~D 119 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV------------LVGNKSD 119 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE------------EEEECTT
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEEchh
Confidence 3678999999999999999999999999999999999999999999998887665556655 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 120 l~ 121 (166)
T 2ce2_X 120 LA 121 (166)
T ss_dssp CS
T ss_pred hh
Confidence 64
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-07 Score=77.08 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=59.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+|
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iilv~nK~D 138 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQ------------VILVGNKCD 138 (189)
T ss_dssp EEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECTT
T ss_pred EEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECcc
Confidence 577999999999999999999999999999999999999999999998887642 2345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 139 l 139 (189)
T 2gf9_A 139 L 139 (189)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-07 Score=77.85 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=59.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++. ..++..+++.++++++|||++++.+|+++..|...+.......++|++ +|+||+
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~NK~ 142 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI------------LVGNKA 142 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE------------EEEECG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE------------EEEECc
Confidence 3477999999998 778888999999999999999999999999999998887655566765 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 143 D 143 (196)
T 2atv_A 143 D 143 (196)
T ss_dssp G
T ss_pred c
Confidence 9
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-07 Score=82.38 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=68.0
Q ss_pred ccceeeeccCCCCCch-hhhhccccccEEEEEEecCCcc-chhhHHH-HHHHHHhhc-cCCCCCchhhccccccceeeee
Q psy16673 223 EDVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLE-SFQSVKC-YFEEIREQR-QDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~-~~~~i~~~~-~~~~~p~v~~~~~~~~~~~ilv 298 (373)
..+.+|||+|++.|.. ++..++++++++++|||+++.. ++..+.. |.+.+.... ...++|+ ++|
T Consensus 54 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi------------ilv 121 (214)
T 2fh5_B 54 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL------------LIA 121 (214)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEE------------EEE
T ss_pred cEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCE------------EEE
Confidence 4578999999999987 8888999999999999999854 4666655 444443322 1224554 499
Q ss_pred ccccccccchh----------------------------------hhhhHHHHHhhhc---CCeEEEeccCCCcCH
Q psy16673 299 YSTTCLESFQS----------------------------------VKCYFEEIREQRQ---DFQLLECSAKDNYNI 337 (373)
Q Consensus 299 gnK~Dl~~~r~----------------------------------v~~~~~~~~a~~~---~~~~~E~SAktg~nv 337 (373)
+||+|+...+. +..++++.++... +++|+||||++|.+-
T Consensus 122 ~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~ 197 (214)
T 2fh5_B 122 CNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD 197 (214)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----
T ss_pred EECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc
Confidence 99999965532 2222233333322 789999999998654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4e-07 Score=78.38 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=58.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++ ..|...+....+ ++|+ ++|+||+
T Consensus 72 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~------------ilv~nK~ 137 (194)
T 3reg_A 72 ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID--TAKT------------VLVGLKV 137 (194)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TSEE------------EEEEECG
T ss_pred EEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCE------------EEEEECh
Confidence 357999999999999999999999999999999999999997 558888876543 3554 4999999
Q ss_pred ccc
Q psy16673 303 CLE 305 (373)
Q Consensus 303 Dl~ 305 (373)
|+.
T Consensus 138 Dl~ 140 (194)
T 3reg_A 138 DLR 140 (194)
T ss_dssp GGC
T ss_pred hhc
Confidence 975
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.2e-07 Score=75.42 Aligned_cols=67 Identities=27% Similarity=0.396 Sum_probs=51.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..+...+++.++++++|||++++.+++.+..|...+...... ++| +++|+||+|
T Consensus 56 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p------------iilv~nK~D 122 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EIC------------LCIVGNKID 122 (170)
T ss_dssp EEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG-GSE------------EEEEEECGG
T ss_pred EEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCe------------EEEEEECcc
Confidence 4678999999999999999999999999999999999999999999888775432 344 459999999
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-07 Score=78.12 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iilv~nK~ 123 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQ------------VLLVGNKC 123 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-SSCE------------EEEEEECT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECc
Confidence 3578999999999999999999999999999999999999999999998877652 2345 45999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 124 Dl 125 (203)
T 1zbd_A 124 DM 125 (203)
T ss_dssp TC
T ss_pred cc
Confidence 96
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.3e-07 Score=79.14 Aligned_cols=72 Identities=25% Similarity=0.429 Sum_probs=62.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++||+|++.|..+...+++.++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+|
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~D 145 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKLD 145 (204)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS--SCCEE------------EEEECHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEechh
Confidence 559999999999999999999999999999999999999998 68888887652 45555 9999999
Q ss_pred cccchhh
Q psy16673 304 LESFQSV 310 (373)
Q Consensus 304 l~~~r~v 310 (373)
+...+..
T Consensus 146 l~~~~~~ 152 (204)
T 4gzl_A 146 LRDDKDT 152 (204)
T ss_dssp HHTCHHH
T ss_pred hccchhh
Confidence 9876553
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-07 Score=77.35 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iiiv~NK~ 138 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIV------------MAIAGNKC 138 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC-TTCE------------EEEEEECG
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCc------------EEEEEECc
Confidence 3578999999999999999999999999999999999999999999998887653 2345 45999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 139 D 139 (192)
T 2fg5_A 139 D 139 (192)
T ss_dssp G
T ss_pred c
Confidence 9
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.2e-07 Score=78.43 Aligned_cols=68 Identities=29% Similarity=0.422 Sum_probs=59.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... .+|+ ++|+||+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ilv~nK~D 124 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS-TVLK------------LLVGNKCD 124 (206)
T ss_dssp EEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEE------------EEEEECTT
T ss_pred EEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECCC
Confidence 4779999999999999999999999999999999999999999999988876532 4454 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 125 l 125 (206)
T 2bcg_Y 125 L 125 (206)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-07 Score=77.93 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=58.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|...+..... .++| +++|+||+|
T Consensus 71 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~p------------iilv~nK~D 137 (191)
T 2a5j_A 71 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMV------------IMLIGNKSD 137 (191)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECTT
T ss_pred EEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECcc
Confidence 467999999999999999999999999999999999999999999998877643 2345 449999998
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-07 Score=76.58 Aligned_cols=67 Identities=27% Similarity=0.391 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..+...+++.++++++|||++++.+++.+..|...+....+ ++|+ ++|+||+|
T Consensus 59 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~------------ilv~nK~D 124 (181)
T 3tw8_B 59 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD--DVCR------------ILVGNKND 124 (181)
T ss_dssp EEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT--TSEE------------EEEEECTT
T ss_pred EEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCE------------EEEEECCC
Confidence 467999999999999999999999999999999999999999999998887654 3554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 125 l 125 (181)
T 3tw8_B 125 D 125 (181)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.8e-07 Score=76.93 Aligned_cols=70 Identities=31% Similarity=0.479 Sum_probs=51.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..++..++++++|||++++.+++++..|...+.......++|++ +|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i------------lv~nK~D 137 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV------------LVGNKCD 137 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE------------EEEECTT
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE------------EEEECCc
Confidence 3679999999999999999999999999999999999999999999998887665556655 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 138 l~ 139 (190)
T 3con_A 138 LP 139 (190)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-07 Score=75.88 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... ++| +++|+||+|
T Consensus 62 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p------------~i~v~nK~D 128 (181)
T 2efe_B 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP-NMV------------MALAGNKSD 128 (181)
T ss_dssp EEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECCc
Confidence 5789999999999999999999999999999999999999999999988876532 445 449999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 129 l 129 (181)
T 2efe_B 129 L 129 (181)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.7e-07 Score=74.28 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=59.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.+..+...+++.++++++|||++++.+++++..|...+...... .+|+ ++|+||+
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~~i------------ilv~nK~ 121 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP-SIVV------------AIAGNKC 121 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TSEE------------EEEEECT
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCcE------------EEEEECC
Confidence 34779999999999999999999999999999999999999999999988875432 3454 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 122 Dl 123 (170)
T 1z0j_A 122 DL 123 (170)
T ss_dssp TC
T ss_pred cc
Confidence 95
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-07 Score=79.15 Aligned_cols=69 Identities=30% Similarity=0.419 Sum_probs=55.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|+..+...... ++| +++|+||+|
T Consensus 83 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p------------~ilv~nK~D 149 (199)
T 3l0i_B 83 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-NVN------------KLLVGNKCD 149 (199)
T ss_dssp EEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C-CSE------------EEEC-CCSS
T ss_pred EEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC-CCC------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999988766542 345 459999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 150 l~ 151 (199)
T 3l0i_B 150 LT 151 (199)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-07 Score=76.08 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=52.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|+++ ..++++++++++|||++++.+|+++..|++.+...... .++|+ ++||||
T Consensus 55 ~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi------------ilv~nK 117 (178)
T 2iwr_A 55 LVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL------------ALVGTQ 117 (178)
T ss_dssp EEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE------------EEEEEC
T ss_pred EEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE------------EEEEEC
Confidence 467899999987 46788899999999999999999999988777765432 24554 499999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 118 ~Dl 120 (178)
T 2iwr_A 118 DRI 120 (178)
T ss_dssp TTC
T ss_pred ccc
Confidence 996
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.5e-07 Score=85.66 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=69.7
Q ss_pred CCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh--
Q psy16673 232 GDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS-- 309 (373)
Q Consensus 232 g~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~-- 309 (373)
.++.|.++.+.++..++.+++|+|+++..+ .|.+++.+..+ +.| .++|+||.|+.....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~--~~p------------iilV~NK~DLl~~~~~~ 117 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA--DNP------------ILLVGNKADLLPRSVKY 117 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT--TSC------------EEEEEECGGGSCTTCCH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC--CCC------------EEEEEEChhcCCCccCH
Confidence 467888888888899999999999999764 23333443322 344 459999999865422
Q ss_pred -hhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 310 -VKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 310 -v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...++.+...+..|+ +++++||++|.|++++++.+.+..
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 222333444566676 799999999999999999997743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.6e-07 Score=76.10 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=59.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+..... .++| +++|+||+|
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~-~~~p------------iilv~nK~D 141 (193)
T 2oil_A 75 KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIV------------VMLVGNKSD 141 (193)
T ss_dssp EEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC-TTCE------------EEEEEECGG
T ss_pred EEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe------------EEEEEECCC
Confidence 467999999999999999999999999999999999999999999988877543 2345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 142 l 142 (193)
T 2oil_A 142 L 142 (193)
T ss_dssp G
T ss_pred c
Confidence 6
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-07 Score=75.57 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..+...+++.++++++|||++++.+++++..|...+...... ++| +++|+||+|
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p------------iilv~nK~D 131 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-NTV------------IILIGNKAD 131 (179)
T ss_dssp EEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999988876542 345 459999999
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-07 Score=78.98 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=59.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|++.+...... ++|+ ++|+||+
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ilv~nK~ 138 (191)
T 3dz8_A 72 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD-NAQV------------ILVGNKC 138 (191)
T ss_dssp EEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEE------------EEEEECT
T ss_pred EEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECC
Confidence 34789999999999999999999999999999999999999999999998876532 4554 4999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 139 D 139 (191)
T 3dz8_A 139 D 139 (191)
T ss_dssp T
T ss_pred C
Confidence 9
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=98.28 E-value=5.7e-07 Score=75.10 Aligned_cols=68 Identities=26% Similarity=0.444 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..++..+++.++++++|||++++.+++.+..|...+...... ++| +++|+||+|
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p------------iilv~nK~D 119 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND-EAQ------------LLLVGNKSD 119 (170)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999988876532 345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 120 l 120 (170)
T 1g16_A 120 M 120 (170)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-07 Score=74.98 Aligned_cols=67 Identities=30% Similarity=0.403 Sum_probs=59.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..+...+++.++++++|||++++.+++.+..|...+.... .++|++ +|+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~pii------------lv~nK~D 120 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTA------------LVQNKID 120 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEE------------EEEECGG
T ss_pred EEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEE------------EEEECcc
Confidence 47799999999999999999999999999999999999999999999887765 245554 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 121 l 121 (168)
T 1z2a_A 121 L 121 (168)
T ss_dssp G
T ss_pred c
Confidence 6
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=80.83 Aligned_cols=70 Identities=26% Similarity=0.431 Sum_probs=60.6
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++.|..++..+++.++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+|
T Consensus 205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i------------lv~nK~D 270 (332)
T 2wkq_A 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP--NTPII------------LVGTKLD 270 (332)
T ss_dssp EEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TSCEE------------EEEECHH
T ss_pred EEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC--CCcEE------------EEEEchh
Confidence 459999999999999999999999999999999999999998 58888877654 46655 9999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
+....
T Consensus 271 l~~~~ 275 (332)
T 2wkq_A 271 LRDDK 275 (332)
T ss_dssp HHTCH
T ss_pred ccccc
Confidence 86543
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=74.42 Aligned_cols=69 Identities=45% Similarity=0.630 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.++||+|++.|..+...+++.++++++|||++++.+++++..|...+.+.... .++|++ +|+||+
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii------------~v~nK~ 119 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM------------LVGNKC 119 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE------------EEEECG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE------------EEEEcc
Confidence 4679999999999999999999999999999999999999999998888776432 245554 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 120 Dl 121 (172)
T 2erx_A 120 DE 121 (172)
T ss_dssp GG
T ss_pred cc
Confidence 95
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-07 Score=78.99 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=47.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 83 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 148 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK--KVPII------------VVGCKT 148 (214)
T ss_dssp EEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS--SCCEE------------EEEECG
T ss_pred EEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 4779999999999999999999999999999999999999997 58888877643 35555 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+...+.
T Consensus 149 Dl~~~~~ 155 (214)
T 2j1l_A 149 DLRKDKS 155 (214)
T ss_dssp GGGSCHH
T ss_pred hhhccch
Confidence 9976654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-07 Score=78.68 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=59.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..+...++.+++++++|||++++.+++++..|+..+...... ++|+ ++|+||+|
T Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~pi------------ilv~nK~D 128 (218)
T 4djt_A 62 KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN-EAPI------------VVCANKID 128 (218)
T ss_dssp EEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS-SSCE------------EEEEECTT
T ss_pred EEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECCC
Confidence 4679999999999999999999999999999999999999999999988876543 3454 49999999
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-07 Score=74.97 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=59.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..+...+++.++++++|||++++.+|+.+..|...+..... .++|+ ++|+||+|
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi------------ilv~nK~D 130 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVII------------MLVGNKTD 130 (179)
T ss_dssp EEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEE------------EEEEECGG
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcE------------EEEEECCc
Confidence 477999999999999999999999999999999999999999999988877654 23554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 131 l 131 (179)
T 2y8e_A 131 L 131 (179)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=8.5e-07 Score=76.90 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=61.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++ ..|...+....+ ++|++ +|+||+
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 139 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP--NVPII------------LVGNKK 139 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECG
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEecH
Confidence 467999999999999999999999999999999999999999 568888877543 45554 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 140 Dl~~~~~ 146 (201)
T 2gco_A 140 DLRQDEH 146 (201)
T ss_dssp GGTTCHH
T ss_pred HhhcCcc
Confidence 9976543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.4e-07 Score=78.30 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=95.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCc-cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..+++.++++++++++|||++++ .+|+.+..|+.++....+ ++|+ ++||||
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~--~~pi------------ilv~nK 121 (184)
T 2zej_A 56 LVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS--SSPV------------ILVGTH 121 (184)
T ss_dssp CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT--TCEE------------EEEEEC
T ss_pred eEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC--CCcE------------EEEEEC
Confidence 3577999999999999999999999999999999998 589999999988876542 3554 499999
Q ss_pred cccccchhhh---hhHHHHHhhhcCCe----EEEeccCCCc-CHHHHHHHHHHHhh
Q psy16673 302 TCLESFQSVK---CYFEEIREQRQDFQ----LLECSAKDNY-NIKEVFRTFLTLSQ 349 (373)
Q Consensus 302 ~Dl~~~r~v~---~~~~~~~a~~~~~~----~~E~SAktg~-nv~elf~~i~~~~~ 349 (373)
+|+...+.+. .+.++.+++..+++ |+||||++|. |++++|+.+++...
T Consensus 122 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 9998877664 46677888888887 9999999996 99999999998653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.4e-07 Score=82.08 Aligned_cols=71 Identities=25% Similarity=0.466 Sum_probs=60.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~--~~pii------------lv~NK~ 144 (204)
T 3th5_A 79 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKL 144 (204)
Confidence 3569999999999999999999999999999999999999997 68877776544 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 145 Dl~~~~ 150 (204)
T 3th5_A 145 DLRDDK 150 (204)
Confidence 997654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.4e-07 Score=76.93 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=97.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|..++...... .++| +++|+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p------------iilv~n 125 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP------------FVVLGN 125 (207)
T ss_dssp EEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC------------EEEEEE
T ss_pred EEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc------------EEEEEE
Confidence 4789999999999999999999999999999999999999999999888776532 2345 459999
Q ss_pred ccccccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCLESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+. .+.+..++.+.++. ..+++|++|||++|.||+++|+.|++.+.
T Consensus 126 K~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 126 KIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp CTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99998 55667777788877 77899999999999999999999998653
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-07 Score=75.68 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=59.3
Q ss_pred cceeeeccCCCCCchhhhhcccc----ccEEEEEEecC-CccchhhHHHHHHHHHhhcc---CCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~----a~~~i~v~dvt-~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ 295 (373)
.+.+|||+|+..+......++.. ++++++|||++ +..+|..+..|...+..... ..++|++
T Consensus 92 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i----------- 160 (193)
T 2ged_A 92 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL----------- 160 (193)
T ss_dssp TCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE-----------
T ss_pred eEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE-----------
Confidence 45699999999998777776665 89999999999 89999999998877765432 2345655
Q ss_pred eeeccccccccchhh
Q psy16673 296 LLVYSTTCLESFQSV 310 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v 310 (373)
+|+||+|+...+.+
T Consensus 161 -lv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 161 -IACNKSELFTARPP 174 (193)
T ss_dssp -EEEECTTSTTCCCH
T ss_pred -EEEEchHhcCCCCH
Confidence 99999999776654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-07 Score=78.66 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=59.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+..... .++| +++|+||+
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p------------iilv~nK~ 140 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIV------------VILCGNKK 140 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCE------------EEEEEECG
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCc------------EEEEEECC
Confidence 3577999999999988899999999999999999999999999999988877543 2345 45999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 141 Dl 142 (200)
T 2o52_A 141 DL 142 (200)
T ss_dssp GG
T ss_pred Cc
Confidence 96
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=75.80 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=61.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++..++++++|||++++.+|+++ ..|...+....+ ++|++ +|+||+
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 139 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP--NVPII------------LVANKK 139 (207)
T ss_dssp EEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECG
T ss_pred EEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEch
Confidence 467999999999999999999999999999999999999999 558888877543 35554 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 140 Dl~~~~~ 146 (207)
T 2fv8_A 140 DLRSDEH 146 (207)
T ss_dssp GGGGCHH
T ss_pred hhhcccc
Confidence 9976544
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.21 E-value=8.1e-07 Score=76.42 Aligned_cols=69 Identities=36% Similarity=0.539 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++..++++++|||++++.+|+++..|+..+...... .++|+ ++|+||+
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi------------ilv~nK~ 124 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV------------MLVGNKC 124 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE------------EEEEECT
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE------------EEEEECc
Confidence 4779999999999999999999999999999999999999999988887775432 24554 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 125 Dl 126 (199)
T 2gf0_A 125 DE 126 (199)
T ss_dssp TC
T ss_pred cC
Confidence 96
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=76.45 Aligned_cols=68 Identities=25% Similarity=0.441 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... ++| +++|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p------------iilv~nK~D 136 (213)
T 3cph_A 70 KLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND-EAQ------------LLLVGNKSD 136 (213)
T ss_dssp EEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT-CSE------------EEEEEECTT
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCC------------EEEEEECCC
Confidence 4789999999999999999999999999999999999999999999888876542 345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 137 l 137 (213)
T 3cph_A 137 M 137 (213)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-07 Score=80.86 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=58.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+.......++|+ ++|+||+
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pi------------ilV~NK~ 151 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI------------VLIGNKA 151 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEE------------EEEEECT
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCE------------EEEEECC
Confidence 4578999999999999999999999999999999999999999988877765543334554 5999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 152 D 152 (217)
T 2f7s_A 152 D 152 (217)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.7e-07 Score=80.25 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=88.0
Q ss_pred ccCCCCCchhhhhccc---------------------cccEEEEEEecCCc--cchhhHHHHHHHHHhhccCCCCCchhh
Q psy16673 230 TCGDLQFPAMRRLSIA---------------------TAHAFLLVYSTTCL--ESFQSVKCYFEEIREQRQDFQFPAMRR 286 (373)
Q Consensus 230 tag~~~~~~~~~~s~~---------------------~a~~~i~v~dvt~~--~S~~~v~~~~~~i~~~~~~~~~p~v~~ 286 (373)
++|+++|..+++.+++ +++++++|||++++ .||+.+..|..++.......++|++
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pii-- 202 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIV-- 202 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEE--
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEE--
Confidence 7888888888888887 89999999999999 9999999999988876333346655
Q ss_pred ccccccceeeeeccccccccchhhhhhHHHHHhhh-cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 287 ~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~-~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||+|+...+.+ ++++.++.. .+++|+||||++|.||+++|+.|++.+
T Consensus 203 ----------lV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 203 ----------VVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ----------EEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------EEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999887777 467777766 589999999999999999999999854
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=79.83 Aligned_cols=101 Identities=8% Similarity=0.013 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCch-hh-h---h-ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 224 DVDILDTCGDLQFPA-MR-R---L-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 224 ~~~~~dtag~~~~~~-~~-~---~-s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
++-++||+|...... +. . . ....++.+++|.|++...... .....+.+. +|+ ..+
T Consensus 185 DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~-----~~i-----------~gv 245 (504)
T 2j37_W 185 EIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK-----VDV-----------ASV 245 (504)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH-----HCC-----------CCE
T ss_pred cEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh-----cCc-----------eEE
Confidence 355789988764321 11 1 1 122678899999998864321 222222221 221 138
Q ss_pred eccccccccchhhhhhHHHHHhhhcCCe------------------EEEeccCCCcC-HHHHHHHHHHH
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQRQDFQ------------------LLECSAKDNYN-IKEVFRTFLTL 347 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~~~~~------------------~~E~SAktg~n-v~elf~~i~~~ 347 (373)
|.||+|.......... .....++| .+.+||.+|.| ++++++.+.+.
T Consensus 246 VlNK~D~~~~~g~~l~----~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 246 IVTKLDGHAKGGGALS----AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEECTTSCCCCTHHHH----HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEeCCccccchHHHHH----HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9999998644322111 12222333 34589999999 99999999864
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=81.39 Aligned_cols=111 Identities=8% Similarity=0.122 Sum_probs=93.7
Q ss_pred cceeeeccCCCCC-----chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeee
Q psy16673 224 DVDILDTCGDLQF-----PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 224 ~~~~~dtag~~~~-----~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~il 297 (373)
.+.+|||+|++.| ..++..++++++++++|||++++.+|+++..|.+.+..... ..++|++ +
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~pii------------l 120 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF------------V 120 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEE------------E
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEE------------E
Confidence 3569999999988 67888899999999999999999999999888766655432 2235544 9
Q ss_pred ecccccccc--chh----hhhhHHHHHhhhcC---CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 298 VYSTTCLES--FQS----VKCYFEEIREQRQD---FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 298 vgnK~Dl~~--~r~----v~~~~~~~~a~~~~---~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
||||+|+.. .|. +..++++.++..+| ++|++|||++ .|+.++|..+++.
T Consensus 121 v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred EEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 999999977 676 78889999999997 7999999999 8999999998874
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=88.50 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=71.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.+|++++|+|++++..-+....|. .+.. .++|++ +++||+|
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~----~~vPiI------------VViNKiD 133 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM----YRTPFV------------VAANKID 133 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH----TTCCEE------------EEEECGG
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH----cCCeEE------------EEecccc
Confidence 4779999999999999999999999999999999943333322222 1221 245655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+.... +...+++|+++|++++.++.+.|..++.
T Consensus 134 l~~~~----------~~~~~~~~~e~sa~~~~~v~~~~~e~i~ 166 (594)
T 1g7s_A 134 RIHGW----------RVHEGRPFMETFSKQDIQVQQKLDTKVY 166 (594)
T ss_dssp GSTTC----------CCCTTCCHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccc----------ccccCCchHHHHHHhHHHHHHHHHHHHH
Confidence 86431 1234678999999999999988877654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.02 E-value=4.5e-06 Score=77.50 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=86.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+||+ +++|..+++.+++++|++++|||++++. +|+.+..|...+.. .++|++ +|+||+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~pii------------lv~NK~ 125 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETV------------MVINKM 125 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEE------------EEECCG
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEE------------EEEeHH
Confidence 5789999 9999999999999999999999999997 78999999887754 245544 999999
Q ss_pred ccccchhhhhhHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.+.+.+ ++.+.++..++ ++|+||||++|.||+++|+.+..
T Consensus 126 DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 126 DLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp GGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99877765 44556666666 89999999999999999987653
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.8e-06 Score=70.92 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=58.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..+...+++.++++++|||++++.+++++..|...+....+ .|+ ++|+||+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~pi------------ilv~NK~ 157 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---YII------------ILVANKI 157 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---CEE------------EEEEECT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---CcE------------EEEEECC
Confidence 4578999999999999999999999999999999999999999999988877643 454 4999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 158 D 158 (208)
T 3clv_A 158 D 158 (208)
T ss_dssp T
T ss_pred C
Confidence 9
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-06 Score=71.84 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=76.1
Q ss_pred cceeeeccCCCCCchhhhhcccc----ccEEEEEEecC-CccchhhHHHHHHHHHhhcc---CCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~----a~~~i~v~dvt-~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|++.+......+++. ++++++|||++ ++.+|..+..|+.++..... ..++|++
T Consensus 56 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i----------- 124 (218)
T 1nrj_B 56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL----------- 124 (218)
T ss_dssp SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE-----------
T ss_pred eEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEE-----------
Confidence 35699999999998888888877 89999999999 89999999998887766532 2345655
Q ss_pred eeeccccccccchhhh------hhHHHHHhhhcCCeEEEeccCCCcC
Q psy16673 296 LLVYSTTCLESFQSVK------CYFEEIREQRQDFQLLECSAKDNYN 336 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~------~~~~~~~a~~~~~~~~E~SAktg~n 336 (373)
+|+||+|+...+.+. .++.+.++...+++|+||||++|.+
T Consensus 125 -lv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 125 -IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp -EEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred -EEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999998776655 5667788888889999999999886
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=70.61 Aligned_cols=112 Identities=10% Similarity=0.021 Sum_probs=80.3
Q ss_pred cceeeeccCC------CC----CchhhhhccccccEEEEEEecCCccchhhH--HHHHHHHHhhccCCCCCchhhccccc
Q psy16673 224 DVDILDTCGD------LQ----FPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 224 ~~~~~dtag~------~~----~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v--~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
.+.+|||+|+ ++ +..+. .++..++++++|||++++.+|+.. ..|...+.... .++|+
T Consensus 77 ~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~pi-------- 145 (228)
T 2qu8_A 77 KYQIIDTPGLLDRAFENRNTIEMTTIT-ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSI-------- 145 (228)
T ss_dssp EEEEEECTTTTTSCGGGCCHHHHHHHH-HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCE--------
T ss_pred eEEEEECCCCcCcccchhhhHHHHHHH-HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcE--------
Confidence 3568999998 33 22333 246778999999999999998632 23444444331 23554
Q ss_pred cceeeeeccccccccchhhhhh---HHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 292 AHAFLLVYSTTCLESFQSVKCY---FEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~~~---~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|+||+|+...+.+..+ ..+.++...+ ++|++|||++|.||+++|+.|++.+..
T Consensus 146 ----ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 146 ----VIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ----EEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----EEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 499999999877766554 4566677777 899999999999999999999987643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.90 E-value=5.9e-06 Score=75.95 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+..++|+++|.||||||||+|++++.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC
Confidence 45689999999999999999999944
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.5e-06 Score=75.32 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
++|+++|.+|||||||+|++++...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999995543
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=97.81 E-value=1e-05 Score=80.86 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=72.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++...+. ..+.......++|++ +++||+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipii------------vviNK~ 144 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPIL------------TFMNKL 144 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEE------------EEEECT
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEE------------EEEcCc
Confidence 346799999999999888889999999999999998754332 233333333456655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCe-----EEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQ-----LLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~-----~~E~SAktg~nv~elf~~i~~ 346 (373)
|+..... .+..+.+...++.+ +..+||+++.||.++++..+.
T Consensus 145 Dl~~~~~--~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~ 191 (529)
T 2h5e_A 145 DRDIRDP--MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETY 191 (529)
T ss_dssp TSCCSCH--HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred CCccccH--HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHh
Confidence 9966432 12334444544432 445899998888777665443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.79 E-value=1.7e-05 Score=66.87 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=78.6
Q ss_pred cceeeeccCCCCCch------h--hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPA------M--RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~------~--~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|++.+.. + ...+++.++++++|||++++.+++. ..|++.+.+... .++|++
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~-~~~p~i----------- 119 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP-AKLPIT----------- 119 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC-TTCCEE-----------
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc-cCCCEE-----------
Confidence 367999999976532 1 1246889999999999999999874 467777766442 345655
Q ss_pred eeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+.... ..++...+++|++|||++|.||+++|+.+.+...
T Consensus 120 -lv~NK~Dl~~~~-------~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 120 -VVRNKADITGET-------LGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp -EEEECHHHHCCC-------CEEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred -EEEECccCCcch-------hhhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999985432 1233446789999999999999999999998653
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=69.51 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=50.0
Q ss_pred eeeeccCCCCCch-----hhh-hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 226 DILDTCGDLQFPA-----MRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 226 ~~~dtag~~~~~~-----~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
-++||+|...... +.. ......+.+++|.|++..... ......+.+..+ ...+|.
T Consensus 186 VIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~~~----------------i~gVIl 246 (443)
T 3dm5_A 186 IIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEATP----------------IGSIIV 246 (443)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHSCT----------------TEEEEE
T ss_pred EEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhhCC----------------CeEEEE
Confidence 3678887544321 211 123346789999999875432 222223322211 123899
Q ss_pred cccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHH
Q psy16673 300 STTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIK 338 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~ 338 (373)
||+|....-.. +.......++|+.+++. |++++
T Consensus 247 TKlD~~~~gG~----~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 247 TKLDGSAKGGG----ALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp ECCSSCSSHHH----HHHHHHTTCCCEEEEEC--SSSTT
T ss_pred ECCCCcccccH----HHHHHHHHCCCEEEEEc--CCChH
Confidence 99998754432 23344567889888875 77664
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00036 Score=67.44 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
.++++|+|++|+|||||+|.+++..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4679999999999999999998654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.2e-05 Score=72.85 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=51.9
Q ss_pred cccchhHhHHhhhhhcCeEEEEEeCCChh-hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 152 GDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++++..+...+++++|++++|||++++. +++.+..|+..+.. ..+|++||+||+|+.+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLN 124 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCC
Confidence 37788888888999999999999999886 99999999987764 4799999999999975
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.1e-05 Score=73.94 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeee---c-ceEEeeeeeEEecc---CCccchhhhcc-
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHV---G-AVTIKEIPIVVAGN---KSDMTSHHRAV- 79 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~---~-~~~~~~~~~~~~~~---~~~~~~~~~~~- 79 (373)
..+|+++|.+|||||||+|++++..-......+++.. .|+.... + +..+-|.+-..... ..........+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 3479999999999999999999541111112223322 2222211 1 11111111111111 01111111222
Q ss_pred --cccceeeeeeecccc---chhhhhccccCCCcceEEEeccCccc
Q psy16673 80 --HLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMT 120 (373)
Q Consensus 80 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~ 120 (373)
...+.+.|+.+.... ..........+.+.|++++.||.|..
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 677888888886222 22233444556788999999999953
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=7.6e-05 Score=68.51 Aligned_cols=85 Identities=7% Similarity=0.048 Sum_probs=61.2
Q ss_pred hccccccEEEEEEecCCccchhh--HHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh
Q psy16673 242 LSIATAHAFLLVYSTTCLESFQS--VKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319 (373)
Q Consensus 242 ~s~~~a~~~i~v~dvt~~~S~~~--v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a 319 (373)
..+..+|+++.|+|+.++.+..+ +.++. .+.| .++|.||+|+..... ...+.+ +-
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp------------~ilVlNK~DL~~~~~-~~~~~~-~~ 75 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKP------------RIMLLNKADKADAAV-TQQWKE-HF 75 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSC------------EEEEEECGGGSCHHH-HHHHHH-HH
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCC------------EEEEEECcccCCHHH-HHHHHH-HH
Confidence 46788999999999999988764 33222 1344 459999999976422 122222 22
Q ss_pred hhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 320 QRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 320 ~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+..|++++++||++|.|++++++.+.+...
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 345789999999999999999998887653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.1e-05 Score=64.95 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=80.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++..++++++|||++++...+.... +.... ..++|+ ++|+||+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----l~~~~-~~~~p~------------ilv~nK~ 117 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA----INHAK-AANVPI------------IVAINKM 117 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHH----HHHHG-GGSCCE------------EEEEETT
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH----HHHHH-hCCCCE------------EEEEECc
Confidence 456799999999999999999999999999999998644333322 22211 124554 4999999
Q ss_pred ccccch--hhhh--hHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 303 CLESFQ--SVKC--YFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 303 Dl~~~r--~v~~--~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
|+.... .+.. .....++..++ ++|++|||++|.||+++|+.|++.++..+.+
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 118 DKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp TSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 996532 1111 11122233344 6899999999999999999999977665543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=5e-05 Score=65.40 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=55.1
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++.+..+...+++.++++++|||+++..+|+++..|...+..... ...| +++|+||+|
T Consensus 56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~------------i~~v~nK~D 121 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIV------------IMLVGNKSD 121 (199)
T ss_dssp EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECTT
T ss_pred EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCe------------EEEEEECcc
Confidence 56899999999988888899999999999999999999999889887765432 2344 459999998
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=5.6e-05 Score=64.50 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=80.5
Q ss_pred ceeeeccC----------CCCCchhhhhccccc---cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 225 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 225 ~~~~dtag----------~~~~~~~~~~s~~~a---~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
+.++||+| ++.|..+...+++.+ +++++|+|++++.++.+.. +.+.+.. .++|+
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~-------- 137 (195)
T 1svi_A 71 LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPV-------- 137 (195)
T ss_dssp EEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCE--------
T ss_pred EEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCE--------
Confidence 56899999 666777777777777 8999999999998887653 2223322 23554
Q ss_pred cceeeeeccccccccchhhhh--hH-HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 292 AHAFLLVYSTTCLESFQSVKC--YF-EEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~~--~~-~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||+|+...+.+.. ++ .+.++...+++|++|||++|.||+++|+.+.+.+
T Consensus 138 ----i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 138 ----IVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ----EEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----EEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 49999999987766543 22 2335555678999999999999999999999854
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=7.5e-05 Score=75.25 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
..+..+|+|+|.+|||||||+|++++..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3456889999999999999999999653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.8e-05 Score=63.56 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=55.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++++..+.+.+++.++++++|||+++..+|+++..|...+..... ...| +++++||+|
T Consensus 80 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~------------i~~v~nK~D 145 (191)
T 1oix_A 80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIV------------IMLVGNKSD 145 (191)
T ss_dssp EEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECGG
T ss_pred EEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCc------------EEEEEECcc
Confidence 45799999999999999999999999999999999999999888887765432 2334 459999998
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=9.6e-05 Score=77.95 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=54.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++++.+++....|..... .++| +++|+||+|
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p------------~ilviNK~D 161 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-----ERIK------------PVVVINKVD 161 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCE------------EEEEEECHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCC------------eEEEEECCC
Confidence 46799999999999999999999999999999999999998776654332 2344 449999999
Q ss_pred ccc
Q psy16673 304 LES 306 (373)
Q Consensus 304 l~~ 306 (373)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 863
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.50 E-value=6.4e-05 Score=74.07 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=35.9
Q ss_pred eeeeccccccch--hHhH--------HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy16673 145 VDILDTCGDLQF--PAMR--------RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 195 (373)
Q Consensus 145 ~~i~D~~g~~~~--~~~~--------~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~ 195 (373)
..+||..|.+.+ .... ..++..+.+.++|+|.++. +++....|++.+.+.
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 678999887432 2222 4556667888999999987 677778888777664
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.50 E-value=1.9e-05 Score=67.09 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=83.6
Q ss_pred ceeeeccC-----------CCCCchhhhhcccc-ccEEEEEEecCCccchhhH-HHHHHH--------HHhhccCCCCCc
Q psy16673 225 VDILDTCG-----------DLQFPAMRRLSIAT-AHAFLLVYSTTCLESFQSV-KCYFEE--------IREQRQDFQFPA 283 (373)
Q Consensus 225 ~~~~dtag-----------~~~~~~~~~~s~~~-a~~~i~v~dvt~~~S~~~v-~~~~~~--------i~~~~~~~~~p~ 283 (373)
+.++||+| ++.|..+...+++. +++++++|++++..+|+++ ..|... +.......++|+
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 45777777 66677777888887 9999999999999999887 446542 222222234554
Q ss_pred hhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe-------EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-------LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 284 v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~-------~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||+|+...+ .+..+.++...+++ |++|||++|.||+++|+.+++.+
T Consensus 126 ------------ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 126 ------------IVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp ------------EEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------EEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 4999999997765 45667777777764 79999999999999999999865
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=69.69 Aligned_cols=110 Identities=11% Similarity=0.045 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCC-ceecceecc--eeeeeee---c-ceEEeeeeeEEecc----CCccchhhh--
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVEDL--YSRDFHV---G-AVTIKEIPIVVAGN----KSDMTSHHR-- 77 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~d~--~~~~~~~---~-~~~~~~~~~~~~~~----~~~~~~~~~-- 77 (373)
.+|+++|.+|||||||+|++++..... ...++++.. .|+.... + +..+-|-+-....+ ....+....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 579999999999999999998653211 112223322 2222211 1 11111111111111 001111111
Q ss_pred cccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCccc
Q psy16673 78 AVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMT 120 (373)
Q Consensus 78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~ 120 (373)
.....+...|+.+.... ..........+.+.|++++.||.|..
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 14566777788775222 12222344556789999999999954
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0035 Score=60.43 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...++|+|++|+|||||+|.+++-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999953
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=8.7e-05 Score=73.40 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=68.0
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH--HHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v--~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
...+.++||+|++.|......++..+|++++|+|++++.++..+ ..+..+........++ +++|+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-----------~~iIvvi 178 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----------HNLIIAM 178 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-----------CCEEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-----------CcEEEEE
Confidence 34578999999999999999999999999999999997654331 1111111111111111 2356999
Q ss_pred cccccccchhhhhhHHH----HHhhhc-----CCeEEEeccCCCcCHHH
Q psy16673 300 STTCLESFQSVKCYFEE----IREQRQ-----DFQLLECSAKDNYNIKE 339 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~----~~a~~~-----~~~~~E~SAktg~nv~e 339 (373)
||+|+.+.+....++.. .+.... +++|++|||++|.||++
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999764443322222 222222 57899999999999985
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=63.20 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
.|+++|+|++|+|||||+|.+++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0001 Score=72.69 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=74.2
Q ss_pred ccceeeeccCCCCCchh--------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~--------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|+..+... +..++..+|++++|+|++++.+++++..+...+.... ++|+
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~pi----------- 346 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKF----------- 346 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEE-----------
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCE-----------
Confidence 34789999999876543 3447899999999999999999986555544444332 3454
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||+|+...+.+.. +.++....+++++|||++|.||+++|+.+.+.+.
T Consensus 347 -IvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 347 -LTVANKLDRAANADALI---RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp -EEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred -EEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 49999999987766532 3344443378999999999999999999998765
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0002 Score=59.53 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred ceeeeccCCCCCc------hhhhhccc--cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 225 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 225 ~~~~dtag~~~~~------~~~~~s~~--~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+.+|||+|++.|. .+...+++ +++++++|+|+++.. ....|..++.+. ++|++
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~----~~p~i------------ 112 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLMEM----GANLL------------ 112 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHHT----TCCEE------------
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHhc----CCCEE------------
Confidence 5699999999885 45566665 789999999998753 344566666542 35555
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.+.. +++.+++.++++|+||||++|.||+++|+.+++..
T Consensus 113 lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 113 LALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999987777664 47788888899999999999999999999999854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0019 Score=62.70 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+..-|+++|.+||||||++..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999987
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0006 Score=66.28 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+++|.+||||||+++.+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00019 Score=64.85 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=50.0
Q ss_pred cceeeeccCCCCCchhhhhccc---------cccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIA---------TAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~---------~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
.+.++||+|+..|..+...+++ +++++++|++++... +.... .|.+.+....+... ..
T Consensus 85 ~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~-----------~~ 152 (262)
T 3def_A 85 TINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEI-----------WC 152 (262)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGG-----------GG
T ss_pred eEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhh-----------hc
Confidence 4569999999888655444433 789999999998765 55543 57777777654311 12
Q ss_pred eeeeeccccccccc
Q psy16673 294 AFLLVYSTTCLESF 307 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~ 307 (373)
++++|+||+|+...
T Consensus 153 ~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 153 KTLLVLTHAQFSPP 166 (262)
T ss_dssp GEEEEEECTTCCCS
T ss_pred CEEEEEeCcccCCC
Confidence 35599999998543
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00042 Score=69.19 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++.+.+....|.. +.. .++|++ +|+||+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~----~~iPii------------vviNK~ 144 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL----RHTPIM------------TFINKM 144 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT----TTCCEE------------EEEECT
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCEE------------EEEeCC
Confidence 457799999999999999999999999999999999988887765542 222 245655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
|+..... .+..+.+...++..+..
T Consensus 145 Dl~~~~~--~~~l~ei~~~l~~~~~~ 168 (528)
T 3tr5_A 145 DRDTRPS--IELLDEIESILRIHCAP 168 (528)
T ss_dssp TSCCSCH--HHHHHHHHHHHCCEEEE
T ss_pred CCccccH--HHHHHHHHHhhCCCcee
Confidence 9965432 22234455555554443
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00029 Score=57.75 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=75.0
Q ss_pred cceeeeccCCCCC-------chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 224 DVDILDTCGDLQF-------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 224 ~~~~~dtag~~~~-------~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
.+.++||+|+..+ ......+++.++++++|||++++.+.... .+.+.+.. .++|+ +
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~p~------------i 112 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY-EVAEYLRR----KGKPV------------I 112 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH-HHHHHHHH----HTCCE------------E
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH-HHHHHHHh----cCCCE------------E
Confidence 4679999998873 33455678999999999999997655331 12223322 23454 4
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||+|+...+ ++.+.++ ..++ +|+||||++|.|++++|+.+++.
T Consensus 113 lv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 113 LVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp EEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 999999997652 3445555 5677 89999999999999999999874
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00013 Score=65.88 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred ccceeeeccCCCCCch----------hhhhcc--ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 223 EDVDILDTCGDLQFPA----------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~----------~~~~s~--~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
..+.++||+|+..+.. +...++ ..+|++++|+|+++..++..+.. .+.+ .++|++
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvi------ 114 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVV------ 114 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEE------
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEE------
Confidence 3678999999988864 455666 88999999999999665544333 2222 245655
Q ss_pred ccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||+|+...+.+... .+.+++.+|+|+++|||++|.|++++|+.+.+.
T Consensus 115 ------lv~NK~Dl~~~~~~~~~-~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 115 ------VALNMMDIAEHRGISID-TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------EEEECHHHHHHTTCEEC-HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------EEEEChhcCCcCCcHHH-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 99999999877765543 455888889999999999999999999999884
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00032 Score=65.11 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=89.5
Q ss_pred ceeeeccCCCCCc----------hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 225 VDILDTCGDLQFP----------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 225 ~~~~dtag~~~~~----------~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
+.++||+|+..+. .....++..+|++++|+|++++.++++...|.+.+.. .++|++
T Consensus 61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvi---------- 126 (308)
T 3iev_A 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVI---------- 126 (308)
T ss_dssp EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEE----------
T ss_pred EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEE----------
Confidence 5589999987655 4566788999999999999999999988777776655 245555
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+...+....+..+.+++..+ .++++|||++|.|++++|+.+.+.+.
T Consensus 127 --lV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 127 --VVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp --EEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred --EEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 999999998556666677778888776 88999999999999999999998653
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00017 Score=70.35 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=78.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeee
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilv 298 (373)
...+.++||+|++.|......++..+|++++|+|+++ .+|+++..|..+..++.. ..++ ++++++
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~-----------~~iivv 150 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGL-----------DQLIVA 150 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTC-----------TTCEEE
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCC-----------CeEEEE
Confidence 3457899999999999888889999999999999999 778766655444333221 1122 235599
Q ss_pred ccccccccc-----h-hhhhhHHHHHhhhcC-----CeEEEeccCCCcCHHHHHH
Q psy16673 299 YSTTCLESF-----Q-SVKCYFEEIREQRQD-----FQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 299 gnK~Dl~~~-----r-~v~~~~~~~~a~~~~-----~~~~E~SAktg~nv~elf~ 342 (373)
+||+|+.+. + ....++.+.+....+ ++|++|||++|.|+.++++
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 999999652 1 222344555555555 7899999999999986543
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00074 Score=65.05 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=85.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++.++.....+...+..... .| +++|+||+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~---~~------------iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV---KN------------LIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC---CC------------EEEEEECG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC---CC------------EEEEEECc
Confidence 4567999999999999999999999999999999999888777777665554321 13 55999999
Q ss_pred ccccchhhhhh--HHHHHhhh---cCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 303 CLESFQSVKCY--FEEIREQR---QDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 303 Dl~~~r~v~~~--~~~~~a~~---~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+.+....... +.+.+... .+++++++||++|.|++++|+.|.+....
T Consensus 140 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 140 DVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 99765432221 22222211 26799999999999999999999985543
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00013 Score=75.31 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=55.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++.+++....|.. +.. .++|++ +|+||+
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~i------------lviNK~ 137 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRI------------VFVNKM 137 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEE------------EEEECT
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEE------------EEEECC
Confidence 356799999999999988999999999999999999998887766653 332 245544 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 98654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0032 Score=58.00 Aligned_cols=91 Identities=11% Similarity=-0.031 Sum_probs=52.4
Q ss_pred ceeeeccCCCC--Cc-hhhh-----hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 225 VDILDTCGDLQ--FP-AMRR-----LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 225 ~~~~dtag~~~--~~-~~~~-----~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+-++||+|... .. .+.. .....++.+++|.|.+.. ++.-...+.+... .|+ ..
T Consensus 183 ~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~-----~~i-----------~g 243 (297)
T 1j8m_F 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQA-----SKI-----------GT 243 (297)
T ss_dssp EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHHT-----CTT-----------EE
T ss_pred EEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHhh-----CCC-----------CE
Confidence 34788888766 31 1111 123467889999998753 2222222232221 221 23
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~el 340 (373)
+|.||+|....-. .....+...++|+.+++ +|++++++
T Consensus 244 vVlnk~D~~~~~g----~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 244 IIITKMDGTAKGG----GALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp EEEECGGGCTTHH----HHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred EEEeCCCCCcchH----HHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 7889999764322 23456677788988877 68887643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00077 Score=61.12 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=48.9
Q ss_pred cceeeeccCCCCCchhhh---------hccccccEEEEEEecCCccchhhHH-HHHHHHHhhccC-CCCCchhhcccccc
Q psy16673 224 DVDILDTCGDLQFPAMRR---------LSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQD-FQFPAMRRLSIATA 292 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~---------~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~-~~~p~v~~~~~~~~ 292 (373)
.+.++||+|...+..+.. ....++|++++|+|++.. ++.... .|.+.+....+. ..+|
T Consensus 88 ~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~---------- 156 (270)
T 1h65_A 88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNK---------- 156 (270)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGG----------
T ss_pred EEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccC----------
Confidence 478999999987754322 124579999999999764 465443 577777665432 1134
Q ss_pred ceeeeeccccccccch
Q psy16673 293 HAFLLVYSTTCLESFQ 308 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r 308 (373)
+++|+||+|+...+
T Consensus 157 --iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 157 --AIVALTHAQFSPPD 170 (270)
T ss_dssp --EEEEEECCSCCCGG
T ss_pred --EEEEEECcccCCcC
Confidence 55999999986544
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00044 Score=69.23 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=55.6
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.++||+|++.|..+...+++.++++++|||+++. +.+..|..++....+ ++|++ +||||
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~--~~pvi------------lV~NK 159 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG--KSPVI------------VVMNK 159 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS--SCCEE------------EEECC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 34578999999999999999999999999999999864 677788888887754 35655 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 160 ~Dl 162 (535)
T 3dpu_A 160 IDE 162 (535)
T ss_dssp TTT
T ss_pred CCc
Confidence 996
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00039 Score=69.40 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=82.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..++..+|++++|+|++++...+....|.... ..++|++ +|+||+|
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~-----~~~vPiI------------VViNKiD 115 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAK-----DAHVPIV------------LAINKCD 115 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHH-----TTTCCEE------------ECCBSGG
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHH-----HcCCcEE------------EEEeccc
Confidence 5789999999999999999999999999999999988776665443221 2245544 9999999
Q ss_pred cccchh--hhhhHHHH--Hhhhc--CCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 304 LESFQS--VKCYFEEI--REQRQ--DFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 304 l~~~r~--v~~~~~~~--~a~~~--~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+...+. +..+.... .+..+ .++|++|||++|.|++++|+.+..++....
T Consensus 116 l~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~ 170 (537)
T 3izy_P 116 KAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLE 170 (537)
T ss_dssp GTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhccc
Confidence 865322 22111111 11222 368999999999999999999999876543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00047 Score=60.08 Aligned_cols=109 Identities=8% Similarity=-0.017 Sum_probs=75.2
Q ss_pred cceeeeccCC----------CCCchhhhhcccc---ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 224 DVDILDTCGD----------LQFPAMRRLSIAT---AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 224 ~~~~~dtag~----------~~~~~~~~~s~~~---a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
.+.++||+|. +.|..+...++.. ++++++|+|++++.+... ..+...+.. .++|+
T Consensus 80 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~------- 147 (223)
T 4dhe_A 80 VAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPI------- 147 (223)
T ss_dssp SEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCE-------
T ss_pred cEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCE-------
Confidence 4668999994 3334555566665 677999999998655332 234444433 23454
Q ss_pred ccceeeeeccccccccchhhh---hhHHHHHhhh------cCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 291 TAHAFLLVYSTTCLESFQSVK---CYFEEIREQR------QDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~---~~~~~~~a~~------~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||+|+...+.+. ....+.+... .++++++|||++|.||+++|+.|.+...
T Consensus 148 -----i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 148 -----HSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp -----EEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred -----EEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 4999999997665532 2233444442 6789999999999999999999998653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00071 Score=62.57 Aligned_cols=106 Identities=14% Similarity=0.062 Sum_probs=75.7
Q ss_pred cceeeeccCCCC--------CchhhhhccccccEEEEEEecCCccchhhHHHHH-HHHHhhccCCCCCchhhccccccce
Q psy16673 224 DVDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 224 ~~~~~dtag~~~--------~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~-~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
++.++||+|... +......+++.+|++++|+|++++.+.. ..|. +.+.+.. .++|++
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~i---------- 121 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPIL---------- 121 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEE----------
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEE----------
Confidence 356899999876 3445667899999999999999986654 3333 4444332 235555
Q ss_pred eeeeccccccccchh-hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 295 FLLVYSTTCLESFQS-VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~-v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+. + .+..+.+ ....++++|||++|.|++++|+.+.+.+
T Consensus 122 --lV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 122 --LVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp --EEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred --EEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 9999999976544 3 2222333 2235899999999999999999999753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00048 Score=62.75 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=79.5
Q ss_pred ccceeeeccCCCCCchh----------hhhc--cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 223 EDVDILDTCGDLQFPAM----------RRLS--IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~----------~~~s--~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
..+.++||+|+..+..+ ...+ ...++++++|+|+++..++..+ ..++.+. ++|++
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~----~~p~i------ 116 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL----GIPCI------ 116 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH----TCCEE------
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc----CCCEE------
Confidence 35678999999887732 2223 2689999999999996554433 3333332 45655
Q ss_pred ccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.+.. ..+.+++.+|+|+++|||++|.|++++|+.+.+.+
T Consensus 117 ------vv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 117 ------VALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ------EEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ------EEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 9999999977666543 35778888899999999999999999999998754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00054 Score=59.57 Aligned_cols=106 Identities=9% Similarity=0.005 Sum_probs=57.7
Q ss_pred ccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc---CCCccEEEecccc-ccccccccccccc
Q psy16673 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQEIPIVVAGNKS-DMTSHHRAVHLED 224 (373)
Q Consensus 149 D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~---~~~~pi~ivgnK~-Dl~~~~r~~~~~~ 224 (373)
+.+||+.++.++..||.++|++|+|.|.+|..-++ .+.-++++...... ...+|+.|.+||. |+.. . .+..
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--A-ms~~- 182 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--R-MPCF- 182 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--B-CCHH-
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--C-CCHH-
Confidence 45689999999999999999999999999986444 22222233333222 2578999999996 6753 1 1111
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHH
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF 269 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~ 269 (373)
++.+..+.. .+. -+-.|...++...+...+.-.|.
T Consensus 183 -EI~e~L~L~--------~l~-R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 183 -YLAHELHLN--------LLN-HPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp -HHHHHTTGG--------GGC-SCEEEEEEETTTCTTHHHHHHHH
T ss_pred -HHHHHcCCc--------CCC-CCEEEEEeECCCCcCHHHHHHHH
Confidence 111111111 111 23455566777777776666665
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00028 Score=69.46 Aligned_cols=107 Identities=17% Similarity=0.066 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCc---cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~---~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
..+.++||+|++.|.......+..+|++++|+|++++ .+|+....+.+.+.... ..++| .+|+++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp-----------~iivvi 188 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGIN-----------HLVVVI 188 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCS-----------SEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCC-----------EEEEEE
Confidence 4578999999999998888889999999999999997 45654333333332221 12344 245999
Q ss_pred cccccccc-----h-hhhhhHHHHHhhhc-------CCeEEEeccCCCcCHHHHH
Q psy16673 300 STTCLESF-----Q-SVKCYFEEIREQRQ-------DFQLLECSAKDNYNIKEVF 341 (373)
Q Consensus 300 nK~Dl~~~-----r-~v~~~~~~~~a~~~-------~~~~~E~SAktg~nv~elf 341 (373)
||+|+... + ....++.+.+.... +++|++|||++|.|++++|
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99998531 1 12222334444433 4789999999999998865
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0006 Score=68.98 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=87.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++++.+++....|...... ++|+ ++|+||+|
T Consensus 72 ~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipi------------IvViNKiD 134 (599)
T 3cb4_D 72 QLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEV------------VPVLNKID 134 (599)
T ss_dssp EEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEE------------EEEEECTT
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCE------------EEeeeccC
Confidence 467999999999999999999999999999999999999998888765532 3454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 304 LESFQSVKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+...+ ..+..+.++..+++ +++++||++|.||+++|+.+++...
T Consensus 135 l~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 135 LPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp STTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 97654 22334556666676 4999999999999999999998643
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00084 Score=66.20 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=76.3
Q ss_pred ccceeeeccCCC-CCch--------hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 223 EDVDILDTCGDL-QFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 223 ~~~~~~dtag~~-~~~~--------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
..+.++||+|+. .+.. ....++..+|++++|+|++++.++++.. +.+.+ .+.|+
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~pi---------- 353 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRY---------- 353 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSE----------
T ss_pred eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCE----------
Confidence 347899999998 6542 3456789999999999999999887643 22222 13454
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||+|+... +..++.+.+.. .++++++|||++|.||+++|+.|.+.+.
T Consensus 354 --ivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 354 --LVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp --EEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred --EEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999653 22233333322 4578999999999999999999998643
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00067 Score=68.58 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=86.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++++.+++....|...... ++|+ ++|+||+|
T Consensus 74 ~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipi------------IvviNKiD 136 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVI------------IPVINKID 136 (600)
T ss_dssp EEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEE------------EEEEECTT
T ss_pred EEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCE------------EEEEeccC
Confidence 466999999999998888899999999999999999999988888765532 3454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 304 LESFQSVKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+...+ .....+.++..+++ +++++||++|.||+++|+.+++.+.
T Consensus 137 l~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 137 LPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp STTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 97654 22334556666676 4999999999999999999998653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=63.21 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=79.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++...+. ..+...+... ++| .+++++||+
T Consensus 75 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~----~ip-----------~iivviNK~ 138 (405)
T 2c78_A 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVP-----------YIVVFMNKV 138 (405)
T ss_dssp CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCC-----------CEEEEEECG
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCC-----------EEEEEEECc
Confidence 457799999999998888889999999999999999875544 3344443332 344 134999999
Q ss_pred ccccchh---hhhhHHHHHhhhcC-----CeEEEeccCCCcC------------------HHHHHHHHHHHh
Q psy16673 303 CLESFQS---VKCYFEEIREQRQD-----FQLLECSAKDNYN------------------IKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~---v~~~~~~~~a~~~~-----~~~~E~SAktg~n------------------v~elf~~i~~~~ 348 (373)
|+..... ...++.+.+....+ ++++++||++|.| ++++++.+.+..
T Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 139 DMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 9974322 12233444554444 7899999999998 788888887744
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00058 Score=67.55 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=79.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..++...+..+|++++|+|++++...+....|.. +. ..++|+ ++++||+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~-~~----~~~vPi------------IVviNKi 113 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQH-AK----AAQVPV------------VVAVNKI 113 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHH-HH----HTTCCE------------EEEEECS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHH-HH----hcCceE------------EEEEEec
Confidence 357899999999999999999999999999999999665555444322 11 124554 4999999
Q ss_pred ccccc--hhhhhhH--HHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESF--QSVKCYF--EEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~--r~v~~~~--~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+... +.+..+. ...++..++ ++|++|||++|.|++++|+.++..+
T Consensus 114 Dl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~ 165 (501)
T 1zo1_I 114 DKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA 165 (501)
T ss_dssp SSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTC
T ss_pred cccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhh
Confidence 98643 2222221 112233343 7999999999999999999998654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00071 Score=68.75 Aligned_cols=108 Identities=11% Similarity=0.080 Sum_probs=70.3
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCcc---chhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~---S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
....+.++||+|++.|......++..+|++++|+|++++. +|.....+.+.+..... .++ +++|+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi-----------~~iIV 310 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI-----------HNLII 310 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC-----------CEEEE
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC-----------CeEEE
Confidence 3446789999999999999999999999999999999852 22111111111111111 112 23569
Q ss_pred eccccccccchhhhh----hHHHHHhhhc-----CCeEEEeccCCCcCHHHH
Q psy16673 298 VYSTTCLESFQSVKC----YFEEIREQRQ-----DFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~----~~~~~~a~~~-----~~~~~E~SAktg~nv~el 340 (373)
|+||+|+...+.... ++...+.... +++|++|||++|.||+++
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999999976432221 1222222222 469999999999999876
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.001 Score=56.15 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=83.9
Q ss_pred ceeeeccCCCCCc------hhhhhccc--cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 225 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 225 ~~~~dtag~~~~~------~~~~~s~~--~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+.+|||+|++.|. .++..++. .++++++++|.++ ++....|...+.. .++|+ +
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~pi------------i 116 (188)
T 2wjg_A 56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANL------------L 116 (188)
T ss_dssp EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCE------------E
T ss_pred EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCE------------E
Confidence 5689999999885 45556664 4899999999885 5666667766654 23454 4
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|+||+|+...+.+. ...+.+++..+++|++|||++|.||+++|+.+++.+..
T Consensus 117 lv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 117 LALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp EEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred EEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 999999998777665 46778888889999999999999999999999987643
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0012 Score=68.10 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=56.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++.+++....|... .. .++|++ +|+||+
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~----~~~p~i------------vviNKi 139 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK----YKVPRI------------AFANKM 139 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH----TTCCEE------------EEEECT
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH----cCCCEE------------EEEECC
Confidence 4567999999999999999999999999999999999998887766643 22 245554 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 140 D~~~~~ 145 (691)
T 1dar_A 140 DKTGAD 145 (691)
T ss_dssp TSTTCC
T ss_pred CcccCC
Confidence 986543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=62.87 Aligned_cols=111 Identities=9% Similarity=-0.061 Sum_probs=80.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|+++....+....| ..+.. .++|. +++++||+
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~-----------iivviNK~ 129 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEH-----------VVVYVNKA 129 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCC-----------EEEEEECG
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCe-----------EEEEEECc
Confidence 4577999999999988888889999999999999998766555444 23322 23442 34899999
Q ss_pred ccccchh---hhhhHHHHHhhhcC-----CeEEEeccCCCcC----------HHHHHHHHHHHhh
Q psy16673 303 CLESFQS---VKCYFEEIREQRQD-----FQLLECSAKDNYN----------IKEVFRTFLTLSQ 349 (373)
Q Consensus 303 Dl~~~r~---v~~~~~~~~a~~~~-----~~~~E~SAktg~n----------v~elf~~i~~~~~ 349 (373)
|+..... ...++.+.+....+ ++|+++||++|.| ++++|+.+.+...
T Consensus 130 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 130 DAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 9974321 12234455555554 6999999999876 8999999988543
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0016 Score=63.26 Aligned_cols=103 Identities=12% Similarity=-0.035 Sum_probs=74.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++...+.. .+...+... ++ +++++|+||+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~~l~~~~~~----~~-----------~~iIvviNK~ 167 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL----GI-----------KHIVVAINKM 167 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT----TC-----------CEEEEEEECT
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc----CC-----------CeEEEEEEcC
Confidence 3577999999999988888889999999999999997654433 233322221 12 2356999999
Q ss_pred ccccch--hh--hhhHHHHHhhhcC-----CeEEEeccCCCcCHHHHH
Q psy16673 303 CLESFQ--SV--KCYFEEIREQRQD-----FQLLECSAKDNYNIKEVF 341 (373)
Q Consensus 303 Dl~~~r--~v--~~~~~~~~a~~~~-----~~~~E~SAktg~nv~elf 341 (373)
|+.+.. .+ ..++.+.+.+..+ +++++|||++|.|++++|
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 996521 11 2344555666666 789999999999999853
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00094 Score=60.46 Aligned_cols=82 Identities=5% Similarity=-0.001 Sum_probs=56.6
Q ss_pred hhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh
Q psy16673 241 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 320 (373)
Q Consensus 241 ~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~ 320 (373)
......+|.++.|+|+.++.+..+.. + - ++ +++.++|.||+|+.+... ...+.+.+ +
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~-----l---------~-ll------~k~~iivlNK~DL~~~~~-~~~~~~~~-~ 72 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYG-----V---------D-FS------RKETIILLNKVDIADEKT-TKKWVEFF-K 72 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTT-----S---------C-CT------TSEEEEEEECGGGSCHHH-HHHHHHHH-H
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChH-----H---------H-hc------CCCcEEEEECccCCCHHH-HHHHHHHH-H
Confidence 34577899999999999987764321 0 0 00 345669999999976432 22222222 3
Q ss_pred hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 321 RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 321 ~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
..|+++ .+||++|.|++++++.+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 457888 9999999999999887754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0021 Score=58.41 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=83.7
Q ss_pred cceeeeccCCCCCc------hhhhhccc--cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~------~~~~~s~~--~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|+..+. .+++.++. .++++++|+|+++..++ ..|..++.+ .++|++
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~i----------- 111 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVT----------- 111 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEE-----------
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEE-----------
Confidence 46699999999886 45666665 59999999999986543 345555544 245655
Q ss_pred eeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.+. .+.+.+++.+|+++++|||++|.||+++|+.+++.+
T Consensus 112 -lv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 112 -IALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp -EEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred -EEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 999999998777766 466888899999999999999999999999999854
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=65.29 Aligned_cols=102 Identities=10% Similarity=0.027 Sum_probs=70.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCcc---chh----hHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQ----SVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~---S~~----~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
..+.++||+|++.|......++..+|++++|+|++++. +|+ ....+ ..+.. .++| ++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~----~~v~-----------~i 148 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT----LGVR-----------QL 148 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH----TTCC-----------EE
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH----cCCC-----------eE
Confidence 45789999999999998889999999999999999863 442 22222 11111 1233 25
Q ss_pred eeeccccccccc---h-hhhhhHHHHHhhhcC-----CeEEEeccCCCcCHHHH
Q psy16673 296 LLVYSTTCLESF---Q-SVKCYFEEIREQRQD-----FQLLECSAKDNYNIKEV 340 (373)
Q Consensus 296 ilvgnK~Dl~~~---r-~v~~~~~~~~a~~~~-----~~~~E~SAktg~nv~el 340 (373)
++|+||+|+.+. + ....++.+.+....+ ++|++|||++|.|+.++
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 599999999731 1 122233444444444 78999999999999754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0016 Score=61.25 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=83.5
Q ss_pred ceeeeccCC----CCCchhhhhc---cccccEEEEEEecCC---ccchhhHHHHHHHHHhhccC-CCCCchhhccccccc
Q psy16673 225 VDILDTCGD----LQFPAMRRLS---IATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAH 293 (373)
Q Consensus 225 ~~~~dtag~----~~~~~~~~~s---~~~a~~~i~v~dvt~---~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~ 293 (373)
+.++||+|. ..+..+...+ +..++++++|+|+++ +.+++++..|..++..+.+. ..+|++
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i--------- 278 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI--------- 278 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC---------
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE---------
Confidence 557888874 3344444444 445899999999999 88999999999999887542 356655
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+...+ +..+.+++.++ +++++|||++|.|++++|+.|.+.+.
T Consensus 279 ---lV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 279 ---IVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp ---BEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ---EEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 999999997654 23455555555 78999999999999999999998764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00075 Score=62.52 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=56.0
Q ss_pred hhhhhccccccEEEEEEecCCccchhh-HHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh---hhhh
Q psy16673 238 AMRRLSIATAHAFLLVYSTTCLESFQS-VKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS---VKCY 313 (373)
Q Consensus 238 ~~~~~s~~~a~~~i~v~dvt~~~S~~~-v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~---v~~~ 313 (373)
.+.+....++|.+++|+|+.++....+ +..+.-.. ...++| .++|.||+||.+... ....
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~------------~vivlnK~DL~~~~~~~~~~~~ 141 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQ------------PIICITKMDLIEDQDTEDTIQA 141 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCE------------EEEEEECGGGCCCHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCC------------EEEEEECCccCchhhhHHHHHH
Confidence 334456889999999999997665443 33222211 112333 459999999976532 1222
Q ss_pred HHHHHhhhcCCeEEEeccCCCcCHHHHHH
Q psy16673 314 FEEIREQRQDFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 314 ~~~~~a~~~~~~~~E~SAktg~nv~elf~ 342 (373)
..+.+ +..|.+.+.+||++|.|++++++
T Consensus 142 ~~~~y-~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 142 YAEDY-RNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHH-HHHTCCEEECCHHHHTTCTTTGG
T ss_pred HHHHH-HhCCCeEEEEecCCCCCHHHHHh
Confidence 22222 24578999999999999887764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00087 Score=65.36 Aligned_cols=109 Identities=17% Similarity=0.047 Sum_probs=71.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc---hhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES---FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S---~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
...+.++||+|++.|......++..+|++++|+|+++... |+......+.+.... ..++| ++|+|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~~v~-----------~iIvv 161 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVK-----------HLIVL 161 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-HcCCC-----------eEEEE
Confidence 3467899999999999888889999999999999998643 221111111111111 11233 24599
Q ss_pred ccccccccc------hhhhhhHHHHHhhhc------CCeEEEeccCCCcCHHHHHH
Q psy16673 299 YSTTCLESF------QSVKCYFEEIREQRQ------DFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 299 gnK~Dl~~~------r~v~~~~~~~~a~~~------~~~~~E~SAktg~nv~elf~ 342 (373)
+||+|+... .....++...+.... +++|+++||++|.|++++++
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999998431 111122233333333 46899999999999999655
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0046 Score=63.87 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=53.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|+++..+.+....|... . ..++|++ +|+||+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~----~~~ip~i------------lviNKi 144 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N----KYKVPRI------------AFVNKM 144 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H----HcCCCEE------------EEEeCC
Confidence 3467999999999999889999999999999999998877766555432 2 1245554 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 145 D~~~~ 149 (704)
T 2rdo_7 145 DRMGA 149 (704)
T ss_pred Ccccc
Confidence 98654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0025 Score=57.48 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=45.7
Q ss_pred ccceeeeccCCCCCch------hhhhcc--ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~------~~~~s~--~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|+..+.. +...++ ..++++++|+|+++..+.. .|..++.+. ++|++
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~----~~pvi---------- 114 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM----EKKVI---------- 114 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT----TCCEE----------
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc----CCCEE----------
Confidence 4578999999988864 345555 5889999999999865432 355555442 45655
Q ss_pred eeeecccccc
Q psy16673 295 FLLVYSTTCL 304 (373)
Q Consensus 295 ~ilvgnK~Dl 304 (373)
+|+||+|+
T Consensus 115 --lv~NK~Dl 122 (258)
T 3a1s_A 115 --LAMTAIDE 122 (258)
T ss_dssp --EEEECHHH
T ss_pred --EEEECcCC
Confidence 99999995
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=58.96 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=62.5
Q ss_pred cccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc---CCCccEEEeccc-ccccccccccccccc
Q psy16673 150 TCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQEIPIVVAGNK-SDMTSHHRAVHLEDV 225 (373)
Q Consensus 150 ~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~---~~~~pi~ivgnK-~Dl~~~~r~~~~~~~ 225 (373)
.+||+.++.++..||.++|++|+|.|.+|.+-++ ...-+.++.....+ ...+|+.|.+|| .|+.+. .+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~-- 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCF-- 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHH--
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHH--
Confidence 4789999999999999999999999999987544 22222222121111 257899999997 477641 1111
Q ss_pred eeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHH
Q psy16673 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 270 (373)
Q Consensus 226 ~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~ 270 (373)
++.+..+.. .+. -+-.|...++..++...+.-.|.-
T Consensus 268 EI~e~L~L~--------~l~-r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 268 YLAHELHLN--------LLN-HPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp HHHHHTTGG--------GGC-SCEEEEEEETTTCTTHHHHHHHHH
T ss_pred HHHHHcCCc--------cCC-CcEEEEecccCCCcCHHHHHHHHH
Confidence 111111111 111 234566667777777777766654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.003 Score=53.28 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=77.5
Q ss_pred ceeeeccC----------CCCCchhhhhccccc---cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 225 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 225 ~~~~dtag----------~~~~~~~~~~s~~~a---~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
+.++||+| ++.|..+.+.+++.+ +++++|+|+++..+..... +.+.+... ++|++
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~----~~p~i------- 137 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMKSL----NIPFT------- 137 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT----TCCEE-------
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHHHHc----CCCEE-------
Confidence 34788888 556777777777766 8899999998876554332 22222222 35544
Q ss_pred cceeeeecccccccc--chhhhhhHHHHHhhh-cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 292 AHAFLLVYSTTCLES--FQSVKCYFEEIREQR-QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~--~r~v~~~~~~~~a~~-~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+.. .+.+..++.+.++.. .+++|++|||++|.||+++|+.+.+.+
T Consensus 138 -----~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 138 -----IVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp -----EEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----EEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 9999999854 455566666666666 458999999999999999999999864
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0057 Score=65.80 Aligned_cols=110 Identities=13% Similarity=-0.009 Sum_probs=80.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++...+.... ...+... ++|. +|+++||+
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEh-L~ll~~l----gIP~-----------IIVVINKi 422 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-ILLGRQV----GVPY-----------IIVFLNKC 422 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHH-HHHHHHH----TCSC-----------EEEEEECC
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHH-HHHHHHc----CCCe-----------EEEEEeec
Confidence 457899999999998888889999999999999999876554433 3333321 3451 34899999
Q ss_pred ccccchh---hhhhHHHHHhhhcC-----CeEEEeccCCC--------cCHHHHHHHHHHHh
Q psy16673 303 CLESFQS---VKCYFEEIREQRQD-----FQLLECSAKDN--------YNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~---v~~~~~~~~a~~~~-----~~~~E~SAktg--------~nv~elf~~i~~~~ 348 (373)
|+.+... ...++.+.+....+ ++|+++||++| .||+++|+.+.+..
T Consensus 423 DLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 423 DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 9975322 12334455555554 68999999999 57999999998743
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0098 Score=56.13 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=83.2
Q ss_pred ceeeeccCCCCCch---------hhhhccccccEEEEEEecCCcc--chhhHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 225 VDILDTCGDLQFPA---------MRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 225 ~~~~dtag~~~~~~---------~~~~s~~~a~~~i~v~dvt~~~--S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
+.++||+|...+.. ........++++++|+|+++.. ++++...|...+....+ +.|++
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~pii--------- 284 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFL--------- 284 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEE---------
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEE---------
Confidence 56888988755421 1112344689999999999987 78888888888877543 45655
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+...+.+ ++...++...++++++|||++|+||+++|+.+.+.+.
T Consensus 285 ---lV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 285 ---VVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ---EEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ---EEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 99999999876654 3455566677899999999999999999999998763
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.00056 Score=69.28 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=63.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCcc---ch--hhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SF--QSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~---S~--~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
..+.++||+|++.|.......+..+|++++|+|++++. ++ ......+-.+... .++| .+|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip-----------~iIv 320 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGIS-----------EIVV 320 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCC-----------CEEE
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCC-----------eEEE
Confidence 45779999999999888888899999999999999864 22 1111111111111 1233 2459
Q ss_pred eccccccccch-hhh---hhHHHHHh-hhcC-----CeEEEeccCCCcCHH--------------HHHHHHHH
Q psy16673 298 VYSTTCLESFQ-SVK---CYFEEIRE-QRQD-----FQLLECSAKDNYNIK--------------EVFRTFLT 346 (373)
Q Consensus 298 vgnK~Dl~~~r-~v~---~~~~~~~a-~~~~-----~~~~E~SAktg~nv~--------------elf~~i~~ 346 (373)
|+||+|+.... ... ..+...+. ...| ++|++|||++|.||+ +|++.|.+
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 99999986521 111 12222222 3334 489999999999998 68887765
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0047 Score=61.88 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=52.0
Q ss_pred cceeeeccCCCC-----------CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 224 DVDILDTCGDLQ-----------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 224 ~~~~~dtag~~~-----------~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
.+.++||+|... |..+...++..+|++++|+|+++....+....+.+.+... ..|
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~p---------- 220 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH----EDK---------- 220 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC----GGG----------
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc----CCC----------
Confidence 467899999765 4456667889999999999999866666666666555332 233
Q ss_pred ceeeeeccccccccchhhh
Q psy16673 293 HAFLLVYSTTCLESFQSVK 311 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~ 311 (373)
+++|+||+|+...+.+.
T Consensus 221 --vilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 221 --IRVVLNKADMVETQQLM 237 (550)
T ss_dssp --EEEEEECGGGSCHHHHH
T ss_pred --EEEEEECCCccCHHHHH
Confidence 56999999997665543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0054 Score=59.35 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=82.3
Q ss_pred cceeeeccCCCCCchh-------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 224 DVDILDTCGDLQFPAM-------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~-------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
.+.++||+|+..|..+ ...++..++++++|+|++.. .....|..++.+. ++|+ +
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~pi------------I 144 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPF------------V 144 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCE------------E
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCE------------E
Confidence 3569999999888765 34478899999999999322 3334566666654 4554 4
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.. +..+.+++.++++|++|||++|.|++++|+.+.+.+
T Consensus 145 vV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 145 VVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp EECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred EEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999777654 667788888899999999999999999999999965
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.072 Score=45.29 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=46.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++|+++.. .......+..+|.++++...... + ..+..+++.+.......+.+++.+|.|+.|..
T Consensus 78 ~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 78 FAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp EEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred EEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 8899998865 33445556779999998877554 3 66777777776654323567778999999854
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+++|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988843
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.006 Score=52.30 Aligned_cols=31 Identities=23% Similarity=0.545 Sum_probs=25.4
Q ss_pred CCCCcCCCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 1 MKPVMCDNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 1 ~~~~~~~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|..+......|+|.|.+|+||||+.+++.
T Consensus 6 ~~~~~~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 6 SQPAFSPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp --CCSCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3566666667789999999999999999987
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0036 Score=61.36 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=69.4
Q ss_pred ccceeeeccCCCCCchh--------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~--------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|...+... ...++..+|++++|+|++++.++.. ..|.+.+.. .|
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~------~p------------ 332 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVKH------RP------------ 332 (462)
T ss_dssp EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHTT------SC------------
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhccC------Cc------------
Confidence 34679999998665432 3346889999999999999887765 334444421 35
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+++|+||+|+...+.+. ..+.+. .++++++|||++|.|++++|+.+.+.+...
T Consensus 333 iivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 333 LILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp EEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred EEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44999999997766544 111111 467899999999999999999999976443
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0031 Score=53.93 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|++|||||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999983
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0087 Score=56.74 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=77.4
Q ss_pred ccceeeeccCCCC---------CchhhhhccccccEEEEEEecCCcc--chhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 223 EDVDILDTCGDLQ---------FPAMRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 223 ~~~~~~dtag~~~---------~~~~~~~s~~~a~~~i~v~dvt~~~--S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
..+.++||+|... |.... ..+..+|.+++|+|++++. .++.+..|.+.+..... .+.|
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~-~~~p--------- 294 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV-SGKP--------- 294 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC-CSCC---------
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc-CCCC---------
Confidence 3467899999632 22222 2578899999999999987 56666666655554322 2345
Q ss_pred cceeeeeccccccccchh-hhhhHHHHHhhhc---CCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 292 AHAFLLVYSTTCLESFQS-VKCYFEEIREQRQ---DFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~-v~~~~~~~~a~~~---~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+++|+||+|+.+... .....++.++... +.++++|||++|.|++++|+.|.+......
T Consensus 295 ---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 295 ---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp ---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 459999999865431 1112333333433 357899999999999999999998654433
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.012 Score=56.64 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=76.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccch-hhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF-QSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~-~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.++||+|++.|..........+|++++|+|+++.... +....+ ..+.... + +++++|+||
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~~----~-----------~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQIIG----Q-----------KNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHHT----C-----------CCEEEEEEC
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC----C-----------CcEEEEEEC
Confidence 3467999999999877777777888999999999976422 222222 1222111 1 135599999
Q ss_pred cccccchh--hhhhHHHHHhhh---cCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 302 TCLESFQS--VKCYFEEIREQR---QDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 302 ~Dl~~~r~--v~~~~~~~~a~~---~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|+..... ...++.+.+... .+++++++||++|.|++++|+.|.+....
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 147 IELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 99976542 222333444332 46899999999999999999999985443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=52.28 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|++|+|||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999984
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.79 E-value=0.042 Score=51.77 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=49.1
Q ss_pred cccccEEEEEEecCCccc-hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhh--hhhHHHHHhh
Q psy16673 244 IATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQ 320 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S-~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v--~~~~~~~~a~ 320 (373)
..++|.+++|... ++.. ...+..+.-..... +.+.+||.||+||.+.... ..++...+ .
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~----------------~~~~iivlNK~DL~~~~~~~~~~~~~~~y-~ 189 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL----------------QVEPLIVLNKIDLLDDEGMDFVNEQMDIY-R 189 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH----------------TCEEEEEEECGGGCCHHHHHHHHHHHHHH-H
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc----------------CCCEEEEEECccCCCchhHHHHHHHHHHH-H
Confidence 5677888877654 4433 23333332211111 2334599999999765321 11122222 3
Q ss_pred hcCCeEEEeccCCCcCHHHHHHH
Q psy16673 321 RQDFQLLECSAKDNYNIKEVFRT 343 (373)
Q Consensus 321 ~~~~~~~E~SAktg~nv~elf~~ 343 (373)
..|++.+.+||++|.|++++...
T Consensus 190 ~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 190 NIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TTTCCEEECBTTTTBTHHHHHHH
T ss_pred hCCCcEEEEecCCCcCHHHHHHh
Confidence 56889999999999999988754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=95.77 E-value=0.04 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.|+|+|++|+|||||++.+++-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999954
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=53.45 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=44.9
Q ss_pred cceeeeccCCCCCch------hhhhcc--ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~------~~~~s~--~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|+..+.. +...++ .+++++++|+|+++.. ....|..++.+.. .+|++
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~---~~p~i----------- 113 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME---VKNII----------- 113 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT---CCSEE-----------
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC---CCCEE-----------
Confidence 478999999998876 555555 6899999999999853 2223444444331 15544
Q ss_pred eeeccccccc
Q psy16673 296 LLVYSTTCLE 305 (373)
Q Consensus 296 ilvgnK~Dl~ 305 (373)
+|+||+|+.
T Consensus 114 -lv~NK~Dl~ 122 (271)
T 3k53_A 114 -LVLNKFDLL 122 (271)
T ss_dssp -EEEECHHHH
T ss_pred -EEEEChhcC
Confidence 999999963
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.007 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.--|+|+|++|||||||+++++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999984
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0064 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..+...|+|+|++|+|||||++.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3445579999999999999999987
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0097 Score=54.21 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=75.7
Q ss_pred ccceeeeccCCC-------------CCchhhhhccccccEEE-EEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcc
Q psy16673 223 EDVDILDTCGDL-------------QFPAMRRLSIATAHAFL-LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLS 288 (373)
Q Consensus 223 ~~~~~~dtag~~-------------~~~~~~~~s~~~a~~~i-~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~ 288 (373)
..+.++||+|.. .+..+...+++.+++++ +|+|+++..+.++...+.+.+.. .+.|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~------ 194 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQR------ 194 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSS------
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCe------
Confidence 457899999964 34456667888888776 68999987766655445544432 2345
Q ss_pred ccccceeeeeccccccccchhhhhhHHHH--HhhhcC-CeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 289 IATAHAFLLVYSTTCLESFQSVKCYFEEI--REQRQD-FQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 289 ~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~--~a~~~~-~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+++|+||+|+...+....+..+. .....+ +++++|||++|.|++++|+.+.+...-.
T Consensus 195 ------~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 195 ------TIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp ------EEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred ------EEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 45999999997654422222111 111123 4789999999999999999998754333
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0061 Score=52.43 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|++|+|||||++.+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999884
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0081 Score=61.93 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=76.8
Q ss_pred cceeeeccCCCC---CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQ---FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~---~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.++||+|... .......+++.+|++++|+|++++.+..+...|.+.+.. .+.| +++|+|
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~------------iiiVlN 238 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLT------------VFFLVN 238 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCC------------EEEEEE
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCC------------EEEEEE
Confidence 477999999654 345566788999999999999999888877666544432 1334 459999
Q ss_pred ccccccchhhhh---------------hHHHHHhhh--------cCCeEEEeccC--------------CCcCHHHHHHH
Q psy16673 301 TTCLESFQSVKC---------------YFEEIREQR--------QDFQLLECSAK--------------DNYNIKEVFRT 343 (373)
Q Consensus 301 K~Dl~~~r~v~~---------------~~~~~~a~~--------~~~~~~E~SAk--------------tg~nv~elf~~ 343 (373)
|+|+...+.++. .....+... .+.++++|||+ +|.|++++++.
T Consensus 239 K~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~ 318 (695)
T 2j69_A 239 AWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDS 318 (695)
T ss_dssp CGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHH
T ss_pred CcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHH
Confidence 999865542111 111223222 23579999999 99999999999
Q ss_pred HHHHh
Q psy16673 344 FLTLS 348 (373)
Q Consensus 344 i~~~~ 348 (373)
+.+.+
T Consensus 319 L~~~l 323 (695)
T 2j69_A 319 LNTFL 323 (695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0078 Score=51.90 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++...|+|+|++|+|||||++.+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998873
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0062 Score=53.82 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=72.1
Q ss_pred cceeeeccCCCC-----------CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccc
Q psy16673 224 DVDILDTCGDLQ-----------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIAT 291 (373)
Q Consensus 224 ~~~~~dtag~~~-----------~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~ 291 (373)
.+.++||+|... +......++++++++++|+|+++... . ...+...+.+..+. ...|
T Consensus 79 ~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~-~~~~l~~~~~~~~~~~~~~--------- 147 (239)
T 3lxx_A 79 ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-E-EHKATEKILKMFGERARSF--------- 147 (239)
T ss_dssp EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-H-HHHHHHHHHHHHHHHHGGG---------
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-H-HHHHHHHHHHHhhhhccce---------
Confidence 456999999543 33344556778899999999985433 2 22344444432221 1123
Q ss_pred cceeeeeccccccccchhhh------hhHHHHHhhhcCCeEEEeccCCC-----cCHHHHHHHHHHHhh
Q psy16673 292 AHAFLLVYSTTCLESFQSVK------CYFEEIREQRQDFQLLECSAKDN-----YNIKEVFRTFLTLSQ 349 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~------~~~~~~~a~~~~~~~~E~SAktg-----~nv~elf~~i~~~~~ 349 (373)
+++|+||+|+...+.+. .+..+.+.+..+..|+.++++.+ .+|.++|+.+.+++.
T Consensus 148 ---~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 148 ---MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp ---EEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 55999999987665544 34567788888888888887754 789999999988653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.19 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.--|+++|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468899999999999998887
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0092 Score=56.31 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.++|+|++|||||||+|.+++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999999943
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0098 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-|+|+|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999843
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0087 Score=58.94 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=80.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|.......+..+|++++|+|+++...-+....+. .+.. .++|++ +|+||+
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~----~~ip~I------------vviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML-ILDH----FNIPII------------VVITKS 135 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCBC------------EEEECT
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH-HHHH----cCCCEE------------EEEECC
Confidence 45789999999999888888899999999999999854333322221 2221 235555 999999
Q ss_pred ccccch--hhhhhHHHHHhhhc----CCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 303 CLESFQ--SVKCYFEEIREQRQ----DFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 303 Dl~~~r--~v~~~~~~~~a~~~----~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
|+.+.. ....++.+.+.... +++++++||++|.|++++|+.|.+.+...
T Consensus 136 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 136 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred CcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence 986532 22223333433333 67999999999999999999999976544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-++|+|++|+|||||++.+++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998843
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.29 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+...|+++|.+||||||++..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999887
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.014 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+...|+|+|++|+|||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999887
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0098 Score=49.79 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999865
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.013 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...|+|+|++|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999998844
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.014 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.-|+|+|++|+|||||++.++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999843
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.012 Score=51.44 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|++|+|||||++.+++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999984
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.019 Score=55.25 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=71.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..........+|++++|+|++++............+... ++ +++++|+||+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l----~~-----------~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL----GI-----------DKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----TC-----------CCEEEEEECT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc----CC-----------CeEEEEEEcc
Confidence 34679999999998777777778889999999999764222222211122211 11 1356999999
Q ss_pred ccccchh--hhhhHHHHHhhh---cCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 303 CLESFQS--VKCYFEEIREQR---QDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 303 Dl~~~r~--v~~~~~~~~a~~---~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+..... ...++.+.+... .++++++|||++|.|++++|+.|.+.+..
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 146 DLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 9966543 223344444443 36899999999999999999999985543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.016 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.-.|+|+|++|+|||||++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999843
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|++|+|||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=50.27 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=21.2
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
|+-++...|+|.|.+|+||||+.+.+.
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHH
Confidence 433445679999999999999999987
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0047 Score=57.14 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.++|+|++|||||||+|.++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 3799999999999999999983
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.017 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
......|+|+|.+|+||||+.+.+..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998873
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.025 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+.+..-|+|+|++++|||+|+|++++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 344566999999999999999999853
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.-|+|+|++|+|||||++++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.029 Score=52.88 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=77.9
Q ss_pred cceeeeccCCCCC-------------chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 224 DVDILDTCGDLQF-------------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 224 ~~~~~dtag~~~~-------------~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
.+.++||+|..++ ..+...++..++++++++|.++..... ..|...+....+ .+.|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~-~~~~-------- 205 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP-SGDR-------- 205 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT-TCTT--------
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc-cCCC--------
Confidence 5789999999887 556778899999999999877644332 223333333222 2334
Q ss_pred ccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+++|+||+|+...+....+..+.++...+.+|+++|++++.++++.+..+.
T Consensus 206 ----~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 206 ----TFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp ----EEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred ----EEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 559999999987766665666667777889999999999999998766543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.02 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|.|.+|+||||+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=51.29 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.018 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
......|+|+|.+|+||||+.+.+.
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3345689999999999999999987
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=47.66 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|+|.+|+||||+.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999987
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.019 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998873
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.024 Score=52.00 Aligned_cols=111 Identities=10% Similarity=0.034 Sum_probs=68.4
Q ss_pred ccceeeeccCCCC-------------CchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhcc
Q psy16673 223 EDVDILDTCGDLQ-------------FPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLS 288 (373)
Q Consensus 223 ~~~~~~dtag~~~-------------~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~ 288 (373)
..+.++||+|... +..+...++..+|++++|+|.++.. ...+...+.+.+. ..+.|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~----- 201 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRT----- 201 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSE-----
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcE-----
Confidence 4578999999864 3445667889999999999985433 2222223333332 223454
Q ss_pred ccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCC------CcCHHHHHHHHHHHhh
Q psy16673 289 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD------NYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 289 ~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAkt------g~nv~elf~~i~~~~~ 349 (373)
++|+||+|+...+....+..+.....++.+|+++|+++ |.|+.++++.+.+...
T Consensus 202 -------i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 202 -------IGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp -------EEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred -------EEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 49999999876543211221111112336677777765 6888999999887553
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.017 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.|+|+|.+|+|||||++.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998873
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.024 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|+|.+|+||||+++.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999887
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=47.51 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRF 30 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~ 30 (373)
-|+|+|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|+|.|.+|+||||+.++|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999997
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.023 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
....+.|+|+|.+|+||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44466899999999999999999873
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
..|+|+|.+|+|||||++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.019 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|+|+|.+|+||||+..++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999997
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.022 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
..|+|.|.+|+||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3599999999999999999984
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.02 Score=50.25 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999988
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.021 Score=47.94 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+++|.+|+||||+...+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.023 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|.|.+|+||||+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.02 Score=48.42 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999973
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.028 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+...|+++|.+|+||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35679999999999999999887
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.024 Score=50.38 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|+.|+|||||++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999883
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.022 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|.|.+|+||||+..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.02 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+++|+|++|+|||||++.+++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.025 Score=50.10 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.024 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999988
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.022 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
-.++++|+.|+|||||++.+++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.023 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+|+|+|.+|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999984
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.029 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-|+|.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999883
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.026 Score=50.40 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.024 Score=51.01 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999888
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.024 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|.+|+|||||+++++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999984
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.029 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+.++|+|.|.+|+||||+..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999997
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.027 Score=47.35 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|.|.+|+||||+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999987
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.025 Score=51.31 Aligned_cols=20 Identities=50% Similarity=0.846 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999888
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.027 Score=50.11 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999988
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.026 Score=48.03 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 69999999999999999887
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.022 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.++++|++|+|||+|++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.03 Score=49.30 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.18 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
++|.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998873
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.038 Score=47.40 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.+...|+|+|.+|+|||||++.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999883
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.027 Score=50.73 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 58999999999999999888
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.051 Score=55.69 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=50.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.++++++++|+++....+... +...+.. .++|++ +|+||.|
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~-~~~~~~~----~~ip~i------------lv~NKiD 137 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER----LGLPRM------------VVVTKLD 137 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEE------------EEEECGG
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHH-HHHHHHH----ccCCEE------------EEecCCc
Confidence 4569999999999988889999999999999999887765543 3333332 245554 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 138 ~~ 139 (665)
T 2dy1_A 138 KG 139 (665)
T ss_dssp GC
T ss_pred hh
Confidence 86
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.028 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+..-|+|+|.+|+|||||++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345579999999999999999887
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.027 Score=48.77 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++|+|+|+||+||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999883
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.029 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|+|.+|+||||+...+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999987
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.032 Score=46.98 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|+|.+|+||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.028 Score=49.84 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999888
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=94.11 E-value=0.03 Score=50.07 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.03 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+.|+|+|.+|+||||+.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.028 Score=50.40 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.072 Score=50.45 Aligned_cols=109 Identities=5% Similarity=-0.002 Sum_probs=78.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc-c
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS-T 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn-K 301 (373)
..+.++||+|++.|.......++.+|++++|+| +. ..+.....+...+... ++|. +++++| |
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~----~i~~-----------~ivvvNNK 122 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL----GFKH-----------GIIALTRS 122 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT----TCCE-----------EEEEECCG
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc----CCCe-----------EEEEEEec
Confidence 347899999999998877788899999999999 44 4455455554444332 2343 257888 9
Q ss_pred cccccchhhhh--hHHHHHhhhc---CCeEEE--eccCC---CcCHHHHHHHHHHHhh
Q psy16673 302 TCLESFQSVKC--YFEEIREQRQ---DFQLLE--CSAKD---NYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 302 ~Dl~~~r~v~~--~~~~~~a~~~---~~~~~E--~SAkt---g~nv~elf~~i~~~~~ 349 (373)
+|+ +.+.+.. ++.+.+.... .+|+++ +||++ |.|++++|+.|.+...
T Consensus 123 ~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 123 DST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp GGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 999 5443332 3444444443 379999 99999 9999999999998654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.034 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+++|.+|+||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.027 Score=50.83 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.032 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999888
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.049 Score=48.53 Aligned_cols=114 Identities=14% Similarity=0.034 Sum_probs=72.5
Q ss_pred cccceeeeccCCCCCch-----------hhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCC-CCCchhhcc
Q psy16673 222 LEDVDILDTCGDLQFPA-----------MRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDF-QFPAMRRLS 288 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~-----------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~-~~p~v~~~~ 288 (373)
...+.++||+|+..+.. ....+++++|++++|+|+++ +..... +...+.+..+.. ..|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~------ 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGH------ 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGG------
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhcc------
Confidence 34578999999876532 12337789999999999995 433333 334444432210 122
Q ss_pred ccccceeeeeccccccccchhhhh-------hHHHHHhhhcCCe---E--EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 289 IATAHAFLLVYSTTCLESFQSVKC-------YFEEIREQRQDFQ---L--LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 289 ~~~~~~~ilvgnK~Dl~~~r~v~~-------~~~~~~a~~~~~~---~--~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.++++.||+|+...+ +.. ...+.+....+.. | ++|||++|.|++++|+.+.+.+..
T Consensus 141 -----~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 141 -----TIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp -----EEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----EEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 234666699997542 222 2234455555432 3 899999999999999999987643
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.032 Score=50.07 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|+.|+|||||++.+++
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998883
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.035 Score=50.52 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.039 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|.|.+|+||||+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.02 Score=54.12 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred ceeeeccCC-------CCCchhhh-------hccccccEE-----------EEEEecCC-ccchhhHHH-HHHHHHhhcc
Q psy16673 225 VDILDTCGD-------LQFPAMRR-------LSIATAHAF-----------LLVYSTTC-LESFQSVKC-YFEEIREQRQ 277 (373)
Q Consensus 225 ~~~~dtag~-------~~~~~~~~-------~s~~~a~~~-----------i~v~dvt~-~~S~~~v~~-~~~~i~~~~~ 277 (373)
+.++||+|+ +.|..+.. .+++.++++ +++|++++ ..++..+.. |.+.+ .
T Consensus 97 l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~- 172 (361)
T 2qag_A 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---H- 172 (361)
T ss_dssp EEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---C-
T ss_pred eEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---c-
Confidence 568899998 67776765 666665554 47888886 777777764 44433 1
Q ss_pred CCCCCchhhccccccceeeeeccccccccc
Q psy16673 278 DFQFPAMRRLSIATAHAFLLVYSTTCLESF 307 (373)
Q Consensus 278 ~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~ 307 (373)
.++|++ +|+||+|+...
T Consensus 173 -~~~piI------------lV~NK~Dl~~~ 189 (361)
T 2qag_A 173 -NKVNIV------------PVIAKADTLTL 189 (361)
T ss_dssp -S-SCEE------------EEEECCSSSCH
T ss_pred -cCCCEE------------EEEECCCCCCH
Confidence 345655 99999998654
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.031 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++|+|.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999873
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.029 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-++|+|++|+|||||++.++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.033 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 373 | ||||
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 4e-11 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-05 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 5e-11 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-06 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 9e-06 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-10 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-05 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 6e-05 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-09 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 4e-06 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 3e-05 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-09 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-08 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 6e-07 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 1e-09 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 8e-05 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 3e-04 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-09 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 0.001 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-09 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 4e-04 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 3e-09 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 3e-09 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 0.001 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 3e-09 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 9e-05 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 0.004 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 4e-09 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-09 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 8e-05 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 0.002 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 4e-09 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 3e-05 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-09 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 1e-07 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 4e-05 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 7e-09 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 5e-05 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 8e-04 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 7e-09 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 6e-06 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-08 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-04 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 1e-08 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 9e-05 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-08 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 6e-07 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 8e-06 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 5e-08 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-05 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 5e-08 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-06 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 6e-08 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 3e-06 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 1e-07 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 4e-06 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 1e-07 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 3e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-07 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-07 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-07 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 7e-06 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-07 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 3e-04 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 6e-07 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-06 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 8e-07 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 8e-07 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 7e-05 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 8e-07 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-06 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 9e-07 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-06 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 7e-06 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-06 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 1e-06 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 2e-06 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 5e-06 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-06 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 3e-05 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 3e-06 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 4e-06 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-05 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 5e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-05 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 3e-05 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-05 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-05 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 7e-05 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-04 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 1e-04 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 5e-04 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 1e-04 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-04 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 6e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 9e-04 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 0.002 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 0.002 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 0.003 |
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.7 bits (141), Expect = 4e-11
Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 13/152 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
R F + G + + +R + I DT G ++ + A F+
Sbjct: 23 FRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
L+Y T ESF +V+ + +I+ D LLV + +E + V
Sbjct: 83 LMYDITNEESFNAVQDWSTQIKTYSWDN-------------AQVLLVGNKCDMEDERVVS 129
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
F+ E SAKDN N+K+ F
Sbjct: 130 SERGRQLADHLGFEFFEASAKDNINVKQTFER 161
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G ++ + A F+L+Y T ESF +V+ + +I+ D ++ +
Sbjct: 56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCG 232
V GNK DM + D G
Sbjct: 116 V--GNKCDMEDERVVSSERGRQLADHLG 141
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 5e-04
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 8/124 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL-YSRDFHVGAVTIKEIPIVVAG--- 67
+++I+G VGK+ L R+ ++++ + STV + + IK AG
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 68 ----NKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ + + D++ + + D +++ GNK DM
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 124 RAVH 127
Sbjct: 127 VVSS 130
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (141), Expect = 5e-11
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 13/119 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ I DT G +F + A +LVY T +SF +++ + I E
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA------ 110
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+++ + + + V E + +E SAK N N++ F T
Sbjct: 111 -------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 162
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (109), Expect = 1e-06
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F + A +LVY T +SF +++ + I ++
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE--EHASADVEK 114
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
++ GNK D+ R V E + L ++F
Sbjct: 115 MILGNKCDVN-DKRQVSKERGEKLALDYGIKF 145
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (101), Expect = 9e-06
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+L+++G GVGK+C+L RF + ++ + ST+ D R + IK
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK 56
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 1e-10
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V+LG GVGKS + +F+ T+ ++Y T+ED Y ++ V + + AG
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 69 ------KSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
+ V++ + ++ +R I +++P+++ GNK D+ S
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123
Query: 123 HRAVHLE 129
E
Sbjct: 124 REVSSSE 130
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLS 288
DT G QF +MR L I F+LVYS +SFQ +K ++I ++ + P
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP------ 110
Query: 289 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+LV + LES + V + +E SAK + E+F
Sbjct: 111 ------VILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 6e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 127 HLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 186
+ED ++ILDT G QF +MR L I F+LVYS +SFQ +K
Sbjct: 35 TIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK 94
Query: 187 CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
++I + ++++P+++ GNK D+ S E
Sbjct: 95 PMRDQIIRVK-RYEKVPVILVGNKVDLESEREVSSSE 130
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.8 bits (131), Expect = 1e-09
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 26/168 (15%)
Query: 176 TTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQ 235
+ L F K I DF+ + + G K + I DT G +
Sbjct: 16 SCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKL------------QIWDTAGQER 63
Query: 236 FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295
F + A +LVY T +F ++K +F+ + E D +
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL----------- 112
Query: 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+ V E + +E SAK++ N+ E+F T
Sbjct: 113 ---VGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 157
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (104), Expect = 4e-06
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
++++++G GVGKSC+L RF+ + ++ + +T+ D + + +K
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK 52
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (97), Expect = 3e-05
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F + A +LVY T +F ++K +F+ + E D ++ +
Sbjct: 53 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 112
Query: 205 V 205
V
Sbjct: 113 V 113
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (131), Expect = 1e-09
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ I DT G +F + +H ++VY T ESF VK + +EI
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL--- 113
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344
LLV + L+ + V+ + LE SA D+ N+++ F T
Sbjct: 114 ----------KLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 163
Query: 345 LT--LSQILTTNGDENSLKRRSSAYVN-KGK 372
+ N +E + K+ VN KG+
Sbjct: 164 ARQIKESMSQQNLNETTQKKEDKGNVNLKGQ 194
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY-SRDFHVGAVTIKEIPIVVAGNK 69
+L+++G GVGKSC+L RF +TY++ Y ST+ + + + T+K AG +
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 70 --SDMTSH-----HRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
+TS H + + DV++ K+ + ++ GNK D+
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 123 HRAVHLEDVSEWLYCELPKLRYVDILDTCGD 153
+ + + K+ +++
Sbjct: 127 RVVEYDVA---KEFADANKMPFLETSALDST 154
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (111), Expect = 6e-07
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F + +H ++VY T ESF VK + +EI +
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLK 114
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
++ GNK D+ + + D
Sbjct: 115 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFL 146
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 1e-09
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 72 MTSHHRAVHLEDVSEWLYC--------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ + + ++ ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 8e-05
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 200 QEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL 259
+ P + + + L DILDT G ++ AMR + T FL V++
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLL---DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 260 ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319
+SF+ + Y E+I+ + P +++ C + ++V+ +
Sbjct: 88 KSFEDIHQYREQIKRVKDSDDVP-------------MVLVGNKCDLAARTVESRQAQDLA 134
Query: 320 QRQDFQLLECSAKDNYNIKEVFRT 343
+ +E SAK +++ F T
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYT 158
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 127 HLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 186
+ED + +DILDT G ++ AMR + T FL V++ +SF+ +
Sbjct: 35 TIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94
Query: 187 CYFEEIREQRQDFQEIPIVVAGNKSDMTSHH 217
Y E+I+ + D ++P+V+ GNK D+ +
Sbjct: 95 QYREQIKRVK-DSDDVPMVLVGNKCDLAART 124
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 2e-09
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVA-- 66
+ I+ V++G VGK+C+L + N + Y TV D YS + V + A
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 67 -----GNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
++ + E + ++ + PI++ G K D+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 122 HHRAVHLEDVSEWLYC 137
+ +
Sbjct: 124 DKDTIEKLKEKKLTPI 139
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/128 (14%), Positives = 39/128 (30%)
Query: 216 HHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
++ + DT G + +R LS L+ +S SF++V+ +
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
+ + + + + ++ + LECSA
Sbjct: 106 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 165
Query: 336 NIKEVFRT 343
+K VF
Sbjct: 166 GLKTVFDE 173
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 2e-09
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 13/152 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
+R F + I G + ++ I DT G +F A+ + ++ +
Sbjct: 21 LRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 80
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
LVY T +SFQ VK + +E+R+ + +V + LE + V
Sbjct: 81 LVYDITDEDSFQKVKNWVKELRKMLGNE-------------ICLCIVGNKIDLEKERHVS 127
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
E + + SAK N I+E+F
Sbjct: 128 IQEAESYAESVGAKHYHTSAKQNKGIEELFLD 159
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRY 39
++V+LG VGK+ ++ R+ N ++D++
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKH 32
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 3e-09
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 7/135 (5%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGN- 68
R +LVI+G GK+C+L + + + Y TV + Y D V ++ AG
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE 61
Query: 69 ------KSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
+ + E ++ + F +PI++ GNK D+ +
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121
Query: 123 HRAVHLEDVSEWLYC 137
+
Sbjct: 122 EHTRRELAKMKQEPV 136
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 18/131 (13%), Positives = 42/131 (32%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+ ++ + DT G + +R LS L+ +S +S +++ +
Sbjct: 40 VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 99
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ + + ++ ++ + F +ECSAK
Sbjct: 100 VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 159
Query: 333 DNYNIKEVFRT 343
++EVF
Sbjct: 160 TKDGVREVFEM 170
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-------LYSRDFHVGAVTIKEI 61
+ I+ V++G VGK+C+L + N + Y TV D + + +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 62 PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+ V E K ++V + + + P ++ G + D+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 122 HHRAVHLEDVSEWLYC 137
+ ++
Sbjct: 122 DPSTIEKLAKNKQKPI 137
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.001
Identities = 21/114 (18%), Positives = 37/114 (32%)
Query: 230 TCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSI 289
T G + +R LS FL+ +S SF++VK + + I
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 290 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+ + E++ + + +ECSA +K VF
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 3e-09
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 15/164 (9%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
+R F G + + + + I DT G +F + A +
Sbjct: 25 LRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 84
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
LVY T ++F + + E+ ++ + + V
Sbjct: 85 LVYDVTRRDTFVKLDNWLNELETYCTRN-------------DIVNMLVGNKIDKENREVD 131
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355
++ +E SAK ++ F + +I+ T G
Sbjct: 132 RNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE--KIIQTPG 173
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 9e-05
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG 67
++++I+G GVGKS +L RF +T+ +T+ D + V K AG
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.004
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F + A +LVY T ++F + + E+ + +
Sbjct: 58 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 117
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
+V + + +R V + + F
Sbjct: 118 LV---GNKIDKENREVDRNEGLKFARKHSMLF 146
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.5 bits (127), Expect = 4e-09
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
+ ++V++G GK+ +L F + + + Y TV + Y+ F + I+ +G+
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 61
Query: 70 SDMTSH-------HRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
+ D+S + ++ + F +++ G KSD+
Sbjct: 62 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 4e-09
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ + DT G +F ++ AHA LL+Y T SF +++ + EI E Q
Sbjct: 58 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----- 112
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
A +L+ + + VK E + +E SAK N+ F
Sbjct: 113 --------VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 163
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 8e-05
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G +F ++ AHA LL+Y T SF +++ + EI E Q + +
Sbjct: 58 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 117
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
+ ++H R V ED + L L F
Sbjct: 118 L---GNKVDSAHERVVKREDGEKLAKEYGLPF 146
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+++++G GVGK+C+L RF + + + R+ +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL 49
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-09
Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V + AG +
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 71 DMTSHHRAVHLEDV--------SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
+ ++ + +L LR I +++P+++ GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 123 HRAVHLEDVSEWLYCELPKLRYVDI 147
++ + L + +++
Sbjct: 124 RV--VGKEQGQNLARQWCNCAFLES 146
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 228 LDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRL 287
LDT G QF AMR L + F LVYS T +F ++ E+I + P +
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI--- 112
Query: 288 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
L+ + K + + Q + LE SAK N+ E+F
Sbjct: 113 --------LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 53.0 bits (126), Expect = 5e-09
Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 11/144 (7%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + ++ + AG +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 72 MTSHHRAVHLEDV--------SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ + R I + +P ++ GNKSD+
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 124 RAVHLEDVSEWLYCELPKLRYVDI 147
+ E + + YV+
Sbjct: 126 QVSVEEA---KNRADQWNVNYVET 146
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+DILDT G + A+R + FL V+S T +ESF + + E+I
Sbjct: 42 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 101
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
++D P FLLV + + LE + V + R + + +E SAK
Sbjct: 102 LRVKEDENVP------------FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149
Query: 333 DNYNIKEVFRT 343
N+ +VF
Sbjct: 150 TRANVDKVFFD 160
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 41.5 bits (96), Expect = 4e-05
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 127 HLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 186
D + +DILDT G + A+R + FL V+S T +ESF +
Sbjct: 36 TKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA 95
Query: 187 CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCG 232
+ E+I ++D + +P ++ GNKSD+ + E + D
Sbjct: 96 DFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN 140
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 7e-09
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
+ + F++ G + + + I DT G +F ++ R A L
Sbjct: 23 HQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 82
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
LVY T E++ ++ + + R +L + L++ + V
Sbjct: 83 LVYDITSRETYNALTNWLTDARMLASQN-------------IVIILCGNKKDLDADREVT 129
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
Q + LE SA N++E F
Sbjct: 130 FLEASRFAQENELMFLETSALTGENVEEAFVQ 161
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 5e-05
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 8/120 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+ +++G G GKSC+L +F+ + D T+ + ++ I +
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 72 MTSHHR--------AVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
S R A+ + D++ I I++ GNK D+ +
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 8e-04
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 120 TSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL 179
+ + K + I DT G +F ++ R A LLVY T
Sbjct: 31 KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 90
Query: 180 ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHH 217
E++ ++ + + R I I++ GNK D+ +
Sbjct: 91 ETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADR 126
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 7e-09
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 176 TTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQ 235
T + F + DF + + G K V L+ I DT G +
Sbjct: 19 TCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK---------VKLQ---IWDTAGQER 66
Query: 236 FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295
F ++ + +A+A +L Y TC ESF+ + + EI + +
Sbjct: 67 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK-------------VIT 113
Query: 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+LV + L + V E + QD LE SAK++ N++++F
Sbjct: 114 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 161
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 6e-06
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK 59
++V++G GVGK+C+++RF + +T+ D + + +K
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 55
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 1e-08
Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 7/134 (5%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVA---- 66
++ V++G VGK+C+L + + + + Y TV D Y+ VG A
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 67 ---GNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ V + K +V + + +P ++ G + D+
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 124 RAVHLEDVSEWLYC 137
+ + + +
Sbjct: 130 KTLARLNDMKEKPI 143
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 2/118 (1%)
Query: 235 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294
+ +R LS FL+ +S SFQ+VK + ++ + I
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352
+ ++ +++ ++ +ECSA +K VF + ILT
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII--AILT 184
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 1e-08
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 13/149 (8%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
N+ R+ + G GVGKS ++ RF+ T+ + Y TVED Y + G
Sbjct: 1 ND-YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 59
Query: 68 NKSDMTSHHRAVHLEDV---------SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSD 118
+ ++ + L P + + + IPI++ GNK D
Sbjct: 60 SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 119
Query: 119 MTSHHRAVHLEDVSEWLYCELPKLRYVDI 147
+ E K +++
Sbjct: 120 ESPSREVQSSEA---EALARTWKCAFMET 145
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 9e-05
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290
G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D +
Sbjct: 58 TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE---------- 107
Query: 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347
+ +LV + + V+ E + +E SAK N+N+KE+F+ L L
Sbjct: 108 -SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 163
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-LYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGKS +L RF N ++ +ST+ +R V TIK AG
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 68 ----NKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ A+ + D+++ L E + I I++ GNKSD+
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125
Query: 124 RAVHLEDVSEWLYCELP 140
E + L
Sbjct: 126 AVPTDEARAFAEKNNLS 142
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 6e-07
Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
R R +F G + S I DT G ++ + A L
Sbjct: 22 SRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 81
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
LVY ++++V+ + +E+R+ +LV + + L ++V
Sbjct: 82 LVYDIAKHLTYENVERWLKELRDHADS-NIV------------IMLVGNKSDLRHLRAVP 128
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
++ + +E SA D+ N++E F+ LT
Sbjct: 129 TDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 8e-06
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 200
K I DT G ++ + A LLVY ++++V+ + +E+R+
Sbjct: 51 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-- 108
Query: 201 EIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
I I++ GNKSD+ H RAV ++ +L F
Sbjct: 109 NIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNNLSF 143
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 5e-08
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
+R + F E G + +I DT G ++ ++ + A A +
Sbjct: 24 LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q L + L + ++V
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQASPN-------------IVIALSGNKADLANKRAVD 130
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+ +E SAK + N+ E+F
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+LV+LG VGKS ++ RF+ + + ST+ ++ + T+K AG
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69 -----KSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
A+ + D++ K I I ++GNK+D+ +
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127
Query: 124 RAVHLE 129
E
Sbjct: 128 AVDFQE 133
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 5e-08
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 13/152 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ + FQ + + G + + + I DT G F ++ R A L
Sbjct: 21 LQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 80
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
LVY T E+F + + E+ R+ +L+ + + LES + VK
Sbjct: 81 LVYDITRRETFNHLTSWLEDARQHSSS-------------NMVIMLIGNKSDLESRRDVK 127
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
E + +E SAK N++E F
Sbjct: 128 REEGEAFAREHGLIFMETSAKTACNVEEAFIN 159
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 1e-06
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+ +I+G GVGKSC+L +F + + T+ + ++ I +
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 72 MTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSF--------GDEIPIVVAGNKSDMTSHH 123
S R+ + L ++ + +S+ + I++ GNKSD+ S
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 6e-08
Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 14/172 (8%)
Query: 176 TTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQ 235
TT L + + + VV + S +A + + + DT G +
Sbjct: 19 TTFLYRYTD-NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH-LQLWDTAGQER 76
Query: 236 FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295
F ++ A FLL++ T +SF +V+ + +++ +
Sbjct: 77 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV----------- 125
Query: 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347
L+ + L + V + E SA N+++ T L L
Sbjct: 126 -LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY 47
I+L+ LG GVGK+ L R+ N ++ ++ +TV +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDF 42
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 1e-07
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGN 68
E+ RLV++GG GVGKS + +F+ + + Y T+ED Y++ + + + AG
Sbjct: 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ 63
Query: 69 -------KSDMTSHHRAVHLEDVSEWLYCELP-KLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ M + + + V++ E K + I DE P+++ GNK+D+
Sbjct: 64 EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123
Query: 121 SHHRAVHLEDVSEWLYCELP 140
+ E ++
Sbjct: 124 HQRQVTQEEGQQLARQLKVT 143
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 12/131 (9%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+DILDT G +F AMR + T FLLV+S T SF+ + + +I
Sbjct: 43 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ +FP +L+ + L+ + V + ++ +E SAK
Sbjct: 103 LRVKDRDEFP------------MILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAK 150
Query: 333 DNYNIKEVFRT 343
N+ + F
Sbjct: 151 IRMNVDQAFHE 161
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 13/152 (8%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
R F G + + + + DT G +F ++ I + A +
Sbjct: 18 TRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAV 77
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T + SFQ + +++R +R +LV + T L + V
Sbjct: 78 VVYDITNVNSFQQTTKWIDDVRTERGS-------------DVIIMLVGNKTDLADKRQVS 124
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
E + + + +E SAK YN+K++FR
Sbjct: 125 IEEGERKAKELNVMFIETSAKAGYNVKQLFRR 156
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 3e-07
Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV LG Q VGK+ ++ RF+++++ + Y++T+ + + + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 72 MTSHHR--------AVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
S AV + D++ + + G ++ I++ GNK+D+
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 7/148 (4%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRST---VEDLYSRDFHVGAVTIKEIPIV 64
++ +R+++LG GK+ +LK+ S + ++ + S+ F + I +
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 65 VAGNKSDMTSHHRAVHLEDV-SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+S + +++ D + E + + +P+++ NK D
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD---LL 130
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTC 151
A +++E L + R I
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCS 158
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 7/148 (4%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIP---IV 64
N+ +R+++LG GK+ IL + + ++ + + + ++ +
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 65 VAGNKSDMTSHHRAVHLEDVS-EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ T + + D + E + + I + + I++ NK D
Sbjct: 70 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD---LP 126
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTC 151
A+ ++ E L + R + +C
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSC 154
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 1e-07
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 17/120 (14%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
I DT G +F A+ R A L+VY T ++ + + + R
Sbjct: 56 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-------- 107
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+++ + +EE ++ + LE SAK N+++ F
Sbjct: 108 -------PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 160
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 7e-06
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNK 69
+ +I+G GVGKSC+L +F + T+ + +R V IK AG +
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 70 SDMTSHHRAVHLEDVSEWLYC-------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
+ +Y + I++ GNK+D+ +
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124
Query: 123 HRAVHLE 129
+ E
Sbjct: 125 RDVTYEE 131
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
+++++G VGK+C+ RF + DR +T+ + +I + +
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 71 DMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ +V ++ LP + ++IP ++ GNK D+
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122
Query: 121 SHHRAVHLEDVSEW 134
V + ++
Sbjct: 123 -SAIQVPTDLAQKF 135
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF-PAMRRLSIATAHAF 250
R F + G + + + DT G +F +M + HA
Sbjct: 20 YRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 79
Query: 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSV 310
+ VY T + SF S+ + EE ++ P +LV + L S V
Sbjct: 80 VFVYDMTNMASFHSLPAWIEECKQHLLANDIP------------RILVGNKCDLRSAIQV 127
Query: 311 KCYFEEIREQRQDFQLLECSAK---DNYNIKEVFRT 343
+ L E SAK DN +++ +F T
Sbjct: 128 PTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 163
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.0 bits (110), Expect = 6e-07
Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 10/152 (6%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
+R DF E G H +I DT G +F ++ + A A L
Sbjct: 21 LRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL 80
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T +SF + + +E+ EQ A+ + V
Sbjct: 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN----------KIDMLQEGGERKVA 130
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
E + + E SAK N+ +VF
Sbjct: 131 REEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 8/145 (5%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+LV+LG VGKS I+ RF+ N +++ T+ + + I +
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 71 D--------MTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
+ A+ + DV++ + +I I + GNK DM
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 123 HRAVHLEDVSEWLYCELPKLRYVDI 147
+ E L + +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFET 148
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.9 bits (110), Expect = 8e-07
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 14/141 (9%)
Query: 14 VILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMT 73
+ +G GK+ + R L Y D S + + + +
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 74 SHHRAVHLEDVSEWLYCELPKLRYVIQSSSF-----------GDEIPIVVAGNKSDMTSH 122
R ++ R V + F + +++A NK D+
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM- 122
Query: 123 HRAVHLEDVSEWLYCELPKLR 143
A + + + L EL LR
Sbjct: 123 --AKSAKLIQQQLEKELNTLR 141
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.6 bits (109), Expect = 8e-07
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFH 52
++++ILG GVGK+ ++ +++ +S++Y++T+ +
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV 44
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.8 bits (94), Expect = 7e-05
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 9/148 (6%)
Query: 196 RQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYS 255
+ F G L + I DT G +F ++ A +LV+
Sbjct: 24 NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFD 83
Query: 256 TTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 315
T +F+++ + +E Q F+++ + LE+ Q +
Sbjct: 84 VTAPNTFKTLDSWRDEFLIQASPRDPENFP---------FVVLGNKIDLENRQVATKRAQ 134
Query: 316 EIREQRQDFQLLECSAKDNYNIKEVFRT 343
+ + E SAK+ N+++ F+T
Sbjct: 135 AWCYSKNNIPYFETSAKEAINVEQAFQT 162
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 8e-07
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
+E +LV++GG GVGKS + +F+ + + Y T+ED Y++ V + + + AG
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 68 NKSDMTSHHRAVHLEDVSEWLY--------CELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
+ + + ++ E+ KL I D+ P+V+ GNK+D+
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 120 TSHH 123
S
Sbjct: 124 ESQR 127
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 230 TCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSI 289
T G +F AMR + H FLLV++ +SF V F +I + FP
Sbjct: 61 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP------- 113
Query: 290 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+LV + LES + V E SAK N+ E F
Sbjct: 114 -----VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 162
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 46.2 bits (108), Expect = 9e-07
Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 8/148 (5%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI-----KEIPI 63
E + L ++G Q GK+ + +++ TV + +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 64 VVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ ++ + + + IP++V GNK D+
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG-- 118
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTC 151
A+ +++ E + + R +
Sbjct: 119 -ALDEKELIEKMNLSAIQDREICCYSIS 145
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 14/150 (9%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRD--FHVGAVTIKEIPIVVAGN 68
++++ILG GVGK+ ++ R++ + YS +Y++T+ + G AG
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 69 KSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFG-----------DEIPIVVAGNKS 117
+ + D +Y + S + P V+ GNK
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 118 DMTSHHRAVHLEDVSEWLYCELPKLRYVDI 147
D + + E ++ L L +
Sbjct: 123 DA-EESKKIVSEKSAQELAKSLGDIPLFLT 151
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.9 bits (102), Expect = 7e-06
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 7/144 (4%)
Query: 200 QEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL 259
Q+ + + + + + DT G +F ++ A +LVY T
Sbjct: 29 QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA 88
Query: 260 ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319
SF+++K + +E + + + +E+ +
Sbjct: 89 SSFENIKSWRDEFLVHANVNSPETFPFVILGNKI-------DAEESKKIVSEKSAQELAK 141
Query: 320 QRQDFQLLECSAKDNYNIKEVFRT 343
D L SAK+ N+ F
Sbjct: 142 SLGDIPLFLTSAKNAINVDTAFEE 165
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 16/83 (19%), Positives = 33/83 (39%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
++ ++ ILG + VGKS + +F+ + D Y T+E+ +++ V + AG
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61
Query: 68 NKSDMTSHHRAVHLEDVSEWLYC 90
+ +Y
Sbjct: 62 QDEYSIFPQTYSIDINGYILVYS 84
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVVAGNK- 69
+LV++G G GK+ +KR L + +Y +T+ +++ FH IK AG +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 70 -----SDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHR 124
+ + + + IPIV+ GNK D+
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 124
Query: 125 AVHLEDVSEWLYCE 138
+
Sbjct: 125 KAKSIVFHRKKNLQ 138
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 9/152 (5%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
R F G + H + I DT G +F ++R + L
Sbjct: 24 NRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
L +S +SFQ++ + +E + + F+++ + + Q
Sbjct: 84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP---------FVILGNKIDISERQVST 134
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+ D+ E SAKD N+ F
Sbjct: 135 EEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 166
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 14/136 (10%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
++++LG GVGKS ++ R++ N + + T+ + + I +
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 71 DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI------------PIVVAGNKSD 118
S + L + + S++ E P V+ GNK D
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126
Query: 119 MTSHHRAVHLEDVSEW 134
+ R V E+ W
Sbjct: 127 I--SERQVSTEEAQAW 140
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + +F + Y T+ED Y + + + AG +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 72 MTSH-------HRAVHLEDVSEWLYCE-LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ + V++ E + + +I + P+++ NK D+ H
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHL 124
Query: 124 RAVHLEDVSEW 134
R V + E
Sbjct: 125 RKVTRDQGKEM 135
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 3e-05
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+ +D+LDT G +F AMR + T FL+VYS T SF+ V + + I
Sbjct: 42 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 101
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ FP +LV + L + V + + + +E SAK
Sbjct: 102 LRVKDRESFP------------MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 149
Query: 333 D-NYNIKEVFRT 343
D N+ + F
Sbjct: 150 DPPLNVDKTFHD 161
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 3e-06
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFH 52
++L I G GVGKS ++ RFL + Y T+E Y
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT 44
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.6 bits (104), Expect = 4e-06
Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
R F G + L I DT G +F A+ + + A +
Sbjct: 22 WRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T E+F ++K + E+R+ A+ + +
Sbjct: 82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA---------------GNKCDLTDVRE 126
Query: 312 CYFEEIREQRQDFQL--LECSAKDNYNIKEVFRT 343
+ ++ +E SAK+ NI E+F
Sbjct: 127 VMERDAKDYADSIHAIFVETSAKNAININELFIE 160
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 8/128 (6%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG-- 67
+++ +LG GVGKS I+ RF+ +++ T+ + + + I
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63
Query: 68 ------NKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
A+ + D+++ K I + +AGNK D+T
Sbjct: 64 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123
Query: 122 HHRAVHLE 129
+ +
Sbjct: 124 VREVMERD 131
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 6/142 (4%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
+RL +LG GKS ++ RFL +Y T + Y ++ V T + AG
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64
Query: 71 DMTSHHRAVHLEDVSEWLYCELPKLRYVIQ-----SSSFGDEIPIVVAGNKSDMTSHHRA 125
S + S + + + + + G + +++
Sbjct: 65 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR 124
Query: 126 VHLEDVSEWLYCELPKLRYVDI 147
V + + L ++ + Y +
Sbjct: 125 VVGDARARALCADMKRCSYYET 146
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 7/148 (4%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
++ +++I+G GK+ IL +F N + ++ + + +I +
Sbjct: 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 72
Query: 68 NKSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
S T + V ++ + Y + + + +++ NK D+
Sbjct: 73 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV---K 129
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTC 151
+ + ++S++L K I C
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACC 157
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 7/132 (5%)
Query: 8 NERIRLVILGGQGVGKSCILKRFL---FNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
+ +LV LG GK+ +L + T E+L +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70
Query: 65 VAGNKSDMTSHHRAVHLEDVS-EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
K+ + + + V L D + E + + + +PI++ GNK D
Sbjct: 71 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR---P 127
Query: 124 RAVHLEDVSEWL 135
A+ E + E
Sbjct: 128 EAISEERLREMF 139
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 15/149 (10%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
+R++++G GK+ IL + T+ + V I V G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 71 DMTSHHRA--------VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
++ E + + + + ++V NK D
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD---L 113
Query: 123 HRAVHLEDVSEWLYCELPKLRYVDILDTC 151
A++ ++++ L + R I TC
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATC 142
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 41.2 bits (95), Expect = 5e-05
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 7/148 (4%)
Query: 8 NERIRLVILGGQGVGKSCILKRFL---FNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
+R++ILG G GK+ IL R T VE + ++ + + +
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 65 VAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFG-DEIPIVVAGNKSDMTSHH 123
+ ++ +++ D + + K V + +VV NK DM
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM---E 119
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTC 151
+A+ +++ L K R I T
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTS 147
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 7e-05
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 10/115 (8%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVG----------AVTIKE 60
++L++LG GKS I+K+ + + I
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 62
Query: 61 IPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGN 115
V A S + V ED E KL I ++ + + I++ N
Sbjct: 63 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 117
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 11/134 (8%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
RL++LG GKS I+K+ + +
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 67
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+ + S + E L I ++ + I +++ NK D+
Sbjct: 68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127
Query: 121 SHHRAVHLEDVSEW 134
+ + ++
Sbjct: 128 AEKVLAGKSKIEDY 141
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (92), Expect = 1e-04
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRS 41
I++V++G VGKS +++R+ ++ Y+
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK 33
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.1 bits (87), Expect = 5e-04
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 14/148 (9%)
Query: 196 RQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYS 255
+ F + G + + DT G +F A+ + A A +LV+S
Sbjct: 24 KGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFS 83
Query: 256 TTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 315
TT ESF+++ + E++ + D + + L +K
Sbjct: 84 TTDRESFEAISSWREKVVAEVGDIPTALV--------------QNKIDLLDDSCIKNEEA 129
Query: 316 EIREQRQDFQLLECSAKDNYNIKEVFRT 343
E +R + S K++ N+ EVF+
Sbjct: 130 EGLAKRLKLRFYRTSVKEDLNVSEVFKY 157
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 4/144 (2%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
N+ +R++ILG G GK+ IL R + ++ + + + + ++ +
Sbjct: 15 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSI 74
Query: 68 NKSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
+ ++ + K +++ + ++V NK D
Sbjct: 75 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134
Query: 124 RAVHLEDVSEWLYCELPKLRYVDI 147
A + + + V
Sbjct: 135 SASEVSKELNLVELKDRSWSIVAS 158
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 38.5 bits (88), Expect = 4e-04
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 11 IRLVILGGQGVGKSCILKRFL---FNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
+RL++LG GK+ ILK+F +T S ++ L R F + + + +
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY 62
Query: 68 NKSDMTSHHRAVHLEDVSEWLYC-ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAV 126
++ S + + D ++ + + + +++ NK D+ A+
Sbjct: 63 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL---PGAL 119
Query: 127 HLEDVSEWLYCELPKLRYVDILDTC 151
+ E L + + + I
Sbjct: 120 SCNAIQEALELDSIRSHHWRIQGCS 144
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 6e-04
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
N R+V++G QGVGKS + F S V + + + I++
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
Query: 68 NKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSS-----------SFGDEIPIVVAGNK 116
++ + H V + ++IPI++ GNK
Sbjct: 61 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120
Query: 117 SDMTSHHRAVHLE 129
SD+ E
Sbjct: 121 SDLVRCREVSVSE 133
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (85), Expect = 9e-04
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 12 RLVILGGQGVGKSCILKRFL---FNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGN 68
+L+ LG GK+ +L T + T E+L + +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 69 KSDMTSHHRAVHLEDVS-EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVH 127
K + V L D + + E + + + ++P V+ GNK D +
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 128 LED 130
L
Sbjct: 122 LRS 124
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.8 bits (84), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
++L++LG GKS +K+ S T
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTT 33
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.002
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFH 52
++++LG GVGKS + + F +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVV 43
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.0 bits (82), Expect = 0.003
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSD 37
+++++LG GKS LK+ D
Sbjct: 3 VKILLLGAGESGKSTFLKQMRIIHGQD 29
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 373 | |||
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.98 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.94 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.94 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.93 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.92 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.92 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.88 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.87 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.87 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.85 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.85 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.82 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.81 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.8 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.78 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.74 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.74 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.72 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.72 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.7 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.65 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.65 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.6 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.6 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.59 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.52 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.45 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.42 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.41 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.37 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.26 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.22 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.21 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.05 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.05 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.05 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.01 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.96 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.94 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.93 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.87 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 98.79 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 98.74 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 98.65 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 98.64 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 98.52 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.51 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 98.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 98.49 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 98.48 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 98.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 98.44 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 98.43 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 98.41 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 98.41 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 98.4 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.4 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 98.4 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 98.33 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.33 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.28 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 98.23 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.13 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.11 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 98.07 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.04 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.03 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.0 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.98 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 97.77 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.71 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.62 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.62 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.59 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.58 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.45 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.38 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.34 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.22 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.22 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.03 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.96 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.95 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.87 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.8 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.74 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.7 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.65 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.43 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.4 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.27 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.25 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.24 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.18 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 96.11 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.04 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.98 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.92 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.92 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.92 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.83 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.8 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.8 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.79 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.79 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.76 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.66 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.65 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.64 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.63 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.47 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.45 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.37 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.34 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.27 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 95.25 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.23 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 95.22 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.21 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 95.13 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.1 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.1 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 95.07 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.05 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.03 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 94.98 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.89 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.83 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.82 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.77 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.71 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 94.64 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.64 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.6 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 94.6 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 94.59 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.58 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 94.53 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.5 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.49 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.45 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.41 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 94.4 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.35 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.34 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.27 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 94.26 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.21 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.18 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.1 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 94.05 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 94.04 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.03 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 93.91 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.89 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.84 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.81 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 93.8 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 93.76 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.74 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 93.71 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.57 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 93.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.54 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.49 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.24 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.24 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 93.19 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.08 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 93.01 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.96 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.94 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.94 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.89 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.78 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.63 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.62 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.27 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.2 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.79 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.79 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.76 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.64 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.38 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.31 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.29 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.19 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.0 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.98 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.97 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.76 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.67 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.66 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 90.62 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.59 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.46 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.38 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.28 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.14 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.87 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.8 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.68 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.68 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.5 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.85 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.42 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.4 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.08 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.81 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.8 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.78 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.49 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 86.99 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.99 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 86.91 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.85 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.83 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 86.68 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 86.64 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.58 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.52 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 86.47 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 86.46 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 85.98 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 85.73 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 85.52 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.34 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 84.89 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 84.03 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.01 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.94 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.68 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.53 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.33 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 83.3 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 81.72 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 81.55 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 80.54 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 80.4 |
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-34 Score=245.53 Aligned_cols=163 Identities=39% Similarity=0.599 Sum_probs=142.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.|||+++|++|||||||++||+++.|.+.+.||+++.+.....+++..+.
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~------------------------------ 51 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICT------------------------------ 51 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEE------------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccce------------------------------
Confidence 58999999999999999999999999999999999888777777777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|...+..++.++++
T Consensus 52 -------------------------------------------------------l~~~d~~g~~~~~~~~~~~~~~a~~ 76 (171)
T d2erxa1 52 -------------------------------------------------------LQITDTTGSHQFPAMQRLSISKGHA 76 (171)
T ss_dssp -------------------------------------------------------EEEEECCSCSSCHHHHHHHHHHCSE
T ss_pred -------------------------------------------------------eccccccccccccccccccccceeE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.+.......+|+++||||+|+..
T Consensus 77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~---------------------------------- 122 (171)
T d2erxa1 77 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP---------------------------------- 122 (171)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG----------------------------------
T ss_pred EEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc----------------------------------
Confidence 9999999999999999999998887665446677777777777643
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.|.|+.++++.+++.++++|+||
T Consensus 123 ---------------------------------------------------------~~~v~~~e~~~~~~~~~~~~~e~ 145 (171)
T d2erxa1 123 ---------------------------------------------------------SREVQSSEAEALARTWKCAFMET 145 (171)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHHTCEEEEC
T ss_pred ---------------------------------------------------------cccccHHHHHHHHHHcCCeEEEE
Confidence 34455667888999999999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|+.|++++
T Consensus 146 Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 146 SAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp BTTTTBSHHHHHHHHHHTC
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999854
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=9.4e-34 Score=241.59 Aligned_cols=163 Identities=27% Similarity=0.487 Sum_probs=141.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+|+|++|||||||++||+.+.|...+.||+++.+.+.+.+++..+.
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~----------------------------- 53 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ----------------------------- 53 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE-----------------------------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccccccccccccccc-----------------------------
Confidence 568999999999999999999999999999999999888888888888777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++++..++..++++++
T Consensus 54 --------------------------------------------------------l~i~d~~g~~~~~~~~~~~~~~~~ 77 (168)
T d1u8za_ 54 --------------------------------------------------------IDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp --------------------------------------------------------EEEEECCC---CHHHHHHHHHHCS
T ss_pred --------------------------------------------------------ccccccccccchhhhhhhcccccc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|++++.+... .+++|+++||||+|+.+
T Consensus 78 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~--------------------------------- 123 (168)
T d1u8za_ 78 GFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED--------------------------------- 123 (168)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG---------------------------------
T ss_pred eeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccc---------------------------------
Confidence 99999999999999999999999887652 25677777777777643
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.|.|+.++++.+++.++++|+|
T Consensus 124 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e 145 (168)
T d1u8za_ 124 ----------------------------------------------------------KRQVSVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp ----------------------------------------------------------GCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------cccccHHHHHHHHHHcCCeEEE
Confidence 3445666788889999999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++..
T Consensus 146 ~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-33 Score=241.48 Aligned_cols=166 Identities=31% Similarity=0.517 Sum_probs=146.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+.+.+||+|+|++|||||||++||+++.|...+.++..+.+.+.+.+++..+.
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 55 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPAR--------------------------- 55 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeee---------------------------
Confidence 56689999999999999999999999999999999988888888888888877
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|+++|..++..++++
T Consensus 56 ----------------------------------------------------------l~~~d~~g~~~~~~~~~~~~~~ 77 (173)
T d2fn4a1 56 ----------------------------------------------------------LDILDTAGQEEFGAMREQYMRA 77 (173)
T ss_dssp ----------------------------------------------------------EEEEECCCTTTTSCCHHHHHHH
T ss_pred ----------------------------------------------------------eeccccccccccccccchhhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++++|||++++.||+.+..|+..+.+... ..++|+++||||+|+..
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~------------------------------- 125 (173)
T d2fn4a1 78 GHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES------------------------------- 125 (173)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG-------------------------------
T ss_pred ceeeeeecccccccccchhhhhhHHHHHHhc-cCCCceEEEEEeechhh-------------------------------
Confidence 9999999999999999999999998876542 25677777777777753
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.+++.++++|
T Consensus 126 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 145 (173)
T d2fn4a1 126 ------------------------------------------------------------QRQVPRSEASAFGASHHVAY 145 (173)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCEE
T ss_pred ------------------------------------------------------------ccccchhhhhHHHHhcCCEE
Confidence 23334567788899999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|||||++|.||+++|+.|++.+.
T Consensus 146 ~e~Sak~g~gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 146 FEASAKLRLNVDEAFEQLVRAVR 168 (173)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-34 Score=241.27 Aligned_cols=163 Identities=25% Similarity=0.422 Sum_probs=144.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+|+|++|||||||++||+++.|.+.+.||+++.+.+.+.+++..+.
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 53 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYH----------------------------- 53 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEE-----------------------------
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEE-----------------------------
Confidence 467999999999999999999999999999999999778888888888877
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|.+.|..++..++.++|
T Consensus 54 --------------------------------------------------------l~i~d~~g~~~~~~~~~~~~~~~d 77 (167)
T d1xtqa1 54 --------------------------------------------------------LQLVDTAGQDEYSIFPQTYSIDIN 77 (167)
T ss_dssp --------------------------------------------------------EEEEECCCCCTTCCCCGGGTSSCC
T ss_pred --------------------------------------------------------eeecccccccccccccchhhhhhh
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.||+.+..|+..+.+..+ ..++|+++||||+|+..
T Consensus 78 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~--------------------------------- 123 (167)
T d1xtqa1 78 GYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM--------------------------------- 123 (167)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHC-SSCCCEEEEEECTTCGG---------------------------------
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhhccc-ccccceeeecccccccc---------------------------------
Confidence 99999999999999999999999877653 25677887777777653
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.|.|+.++++.+++.++++|+|
T Consensus 124 ----------------------------------------------------------~r~v~~~~~~~~a~~~~~~~~e 145 (167)
T d1xtqa1 124 ----------------------------------------------------------ERVISYEEGKALAESWNAAFLE 145 (167)
T ss_dssp ----------------------------------------------------------GCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------ccchhHHHHHHHHHHcCCEEEE
Confidence 3344566778889999999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++.+
T Consensus 146 ~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 146 SSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-33 Score=238.84 Aligned_cols=164 Identities=28% Similarity=0.462 Sum_probs=145.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
-|.+||+++|++|||||||++||+++.|.+.+.||+.+.+.+.+.+++..+.
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 53 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI---------------------------- 53 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEE----------------------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecccccccccccccc----------------------------
Confidence 3579999999999999999999999999999999999888888888888777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++.+..++..+++++
T Consensus 54 ---------------------------------------------------------~~i~d~~g~~~~~~~~~~~~~~~ 76 (169)
T d1x1ra1 54 ---------------------------------------------------------LDVLDTAGQEEFSAMREQYMRTG 76 (169)
T ss_dssp ---------------------------------------------------------EEEEECCSCGGGCSSHHHHHHHC
T ss_pred ---------------------------------------------------------ccccccccccccccchhhhhhhc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.||++++.|+.++.+... ..++|++++|||+|+..
T Consensus 77 ~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~-------------------------------- 123 (169)
T d1x1ra1 77 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH-------------------------------- 123 (169)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST--------------------------------
T ss_pred cEEEEecccccchhhhccchhhHHHHhhcc-ccCccEEEEecccchhh--------------------------------
Confidence 999999999999999999999999877652 25677777778777754
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.|+.++++.++..++++|+
T Consensus 124 -----------------------------------------------------------~~~v~~e~~~~~~~~~~~~~~ 144 (169)
T d1x1ra1 124 -----------------------------------------------------------LRKVTRDQGKEMATKYNIPYI 144 (169)
T ss_dssp -----------------------------------------------------------TCCSCHHHHHHHHHHHTCCEE
T ss_pred -----------------------------------------------------------hceeehhhHHHHHHHcCCEEE
Confidence 234456678889999999999
Q ss_pred EeccCCCc-CHHHHHHHHHHHh
Q psy16673 328 ECSAKDNY-NIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~-nv~elf~~i~~~~ 348 (373)
|||||+|. ||+++|+.|+++.
T Consensus 145 e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 145 ETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp EEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEcCCCCCcCHHHHHHHHHHHH
Confidence 99999985 9999999999854
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-33 Score=244.86 Aligned_cols=176 Identities=23% Similarity=0.374 Sum_probs=147.8
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+|+|++|||||||++||+.+.|.+.+.||+.+.+.+.+..++..+.
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~-------------------------- 58 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL-------------------------- 58 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEE--------------------------
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEE--------------------------
Confidence 345689999999999999999999999999999999999888888888777777
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..+++
T Consensus 59 -----------------------------------------------------------l~i~D~~g~e~~~~~~~~~~~ 79 (185)
T d2atxa1 59 -----------------------------------------------------------LGLYDTAGQEDYDRLRPLSYP 79 (185)
T ss_dssp -----------------------------------------------------------EEEECCCCSSSSTTTGGGGCT
T ss_pred -----------------------------------------------------------eecccccccchhhhhhhhccc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.||+++.. |...++... +++|+++||||+|+.+. ....
T Consensus 80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~---~~~~~ilvgnK~Dl~~~-~~~~----------------------- 132 (185)
T d2atxa1 80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDD-PKTL----------------------- 132 (185)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTC-HHHH-----------------------
T ss_pred ccceeeeccccchHHHHHHHHHHHHHHHHhcC---CCCCeeEeeeccccccc-hhhh-----------------------
Confidence 9999999999999999998876 555554443 68999999999999862 0000
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD- 323 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~- 323 (373)
.. ......|.|+.++++.+++..+
T Consensus 133 -------------------------~~------------------------------~~~~~~r~v~~~~~~~~a~~~~~ 157 (185)
T d2atxa1 133 -------------------------AR------------------------------LNDMKEKPICVEQGQKLAKEIGA 157 (185)
T ss_dssp -------------------------HH------------------------------HTTTTCCCCCHHHHHHHHHHHTC
T ss_pred -------------------------hh------------------------------hhhcccccccHHHHHHHHHHcCC
Confidence 00 0112245677888999998887
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||||++|.||+++|+.+++.+
T Consensus 158 ~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 158 CCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEecCCCCcCHHHHHHHHHHHH
Confidence 7999999999999999999999865
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-33 Score=237.77 Aligned_cols=163 Identities=23% Similarity=0.292 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.|||+++|++|||||||+++|.+..+.. +.++..+.+.+.+.+++..+.
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~------------------------------ 49 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEAS------------------------------ 49 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEE------------------------------
T ss_pred CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccc------------------------------
Confidence 3899999999999999999999877644 456667778888888888777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|..++..+++++|+
T Consensus 50 -------------------------------------------------------l~i~D~~g~e~~~~~~~~~~~~~d~ 74 (168)
T d2gjsa1 50 -------------------------------------------------------LMVYDIWEQDGGRWLPGHCMAMGDA 74 (168)
T ss_dssp -------------------------------------------------------EEEEECC-------CHHHHHTSCSE
T ss_pred -------------------------------------------------------eeeeecccccccceecccchhhhhh
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+.++..... ...+|+++||||+|+..
T Consensus 75 ~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~---------------------------------- 119 (168)
T d2gjsa1 75 YVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR---------------------------------- 119 (168)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGG----------------------------------
T ss_pred hceeccccccccccccccccchhhcccc-cccceEEEeecccchhh----------------------------------
Confidence 9999999999999999999999877642 24577777777777753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.|+..+++.+++.++++|+||
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~ 142 (168)
T d2gjsa1 120 ---------------------------------------------------------SREVSVDEGRACAVVFDCKFIET 142 (168)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHHTSEEEEC
T ss_pred ---------------------------------------------------------hcchhHHHHHHHHHhcCCEEEEE
Confidence 33445667788899999999999
Q ss_pred ccCCCcCHHHHHHHHHHHhhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~~ 350 (373)
||++|.||+++|+.|++.++.
T Consensus 143 Sak~~~~v~~~f~~l~~~i~~ 163 (168)
T d2gjsa1 143 SAALHHNVQALFEGVVRQIRL 163 (168)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999986543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.5e-33 Score=236.93 Aligned_cols=160 Identities=27% Similarity=0.464 Sum_probs=141.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||+++.|+..+.||++ +.+......++..+.
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~----------------------------- 52 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVR----------------------------- 52 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEE-----------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceee-----------------------------
Confidence 37999999999999999999999999999999998 667777777777777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++++..+...++++++
T Consensus 53 --------------------------------------------------------~~i~d~~g~~~~~~~~~~~~~~~~ 76 (164)
T d1z2aa1 53 --------------------------------------------------------LMLWDTAGQEEFDAITKAYYRGAQ 76 (164)
T ss_dssp --------------------------------------------------------EEEECCTTGGGTTCCCHHHHTTCC
T ss_pred --------------------------------------------------------eeeeccCCccchhhhhhhhhccCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+++..|++++.+.. +++|+++||||+|+.+
T Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~iilVgnK~Dl~~--------------------------------- 120 (164)
T d1z2aa1 77 ACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD--------------------------------- 120 (164)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG---------------------------------
T ss_pred eEEEEEeccchhhhhhcccccccccccC---CCceEEEeeccCCccc---------------------------------
Confidence 9999999999999999999999998776 5678888888888754
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+|.++.++++.+++.++++|+|
T Consensus 121 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e 142 (164)
T d1z2aa1 121 ----------------------------------------------------------DSCIKNEEAEGLAKRLKLRFYR 142 (164)
T ss_dssp ----------------------------------------------------------GCSSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------ceeeeehhhHHHHHHcCCEEEE
Confidence 2334556778888889999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++.+
T Consensus 143 ~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 143 TSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp CBTTTTBSSHHHHHHHHHHH
T ss_pred eccCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-32 Score=235.19 Aligned_cols=164 Identities=30% Similarity=0.516 Sum_probs=140.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+|+|++|||||||++||+.+.|...+.||.++.+++.+.+++..+.
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 54 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAAR----------------------------- 54 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEE-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccc-----------------------------
Confidence 459999999999999999999999999999999999999999988888877
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.+...+..+++++|
T Consensus 55 --------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~~ 78 (171)
T d2erya1 55 --------------------------------------------------------LDILDTAGQEEFGAMREQYMRTGE 78 (171)
T ss_dssp --------------------------------------------------------EEEEECC----CCHHHHHHHHHCS
T ss_pred --------------------------------------------------------cccccccccccccccccccccccc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.||+.+..|+..+.+... ....|+++||||+|+..
T Consensus 79 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~--------------------------------- 124 (171)
T d2erya1 79 GFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDH--------------------------------- 124 (171)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCSEEEEEECTTCTT---------------------------------
T ss_pred eEEEeeccccccchhhHHHHhHHHHhhcc-cCCCCEEEEEeccchhh---------------------------------
Confidence 99999999999999999999988776542 24567777777777653
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.++.++++.+++.++++|+|
T Consensus 125 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e 146 (171)
T d2erya1 125 ----------------------------------------------------------QRQVTQEEGQQLARQLKVTYME 146 (171)
T ss_dssp ----------------------------------------------------------SCSSCHHHHHHHHHHTTCEEEE
T ss_pred ----------------------------------------------------------hccchHHHHHHHHHHcCCEEEE
Confidence 3344556778889999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
|||++|.||+++|+.|+++++
T Consensus 147 ~Sak~~~~i~e~f~~l~~~i~ 167 (171)
T d2erya1 147 ASAKIRMNVDQAFHELVRVIR 167 (171)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-32 Score=234.68 Aligned_cols=161 Identities=27% Similarity=0.401 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+.+.|.+.+.||++..+...+..++..+.
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~------------------------------ 51 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS------------------------------ 51 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceE------------------------------
Confidence 48999999999999999999999999999999998777777777777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.+. .+..+++++++
T Consensus 52 -------------------------------------------------------l~i~D~~g~~~~~-~~~~~~~~~~~ 75 (168)
T d2atva1 52 -------------------------------------------------------MEILDTAGQEDTI-QREGHMRWGEG 75 (168)
T ss_dssp -------------------------------------------------------EEEEECCCCCCCH-HHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEeecccccccc-cchhhhccccc
Confidence 9999999998875 55678999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.... ..+++|+++||||+|+..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~---------------------------------- 120 (168)
T d2atva1 76 FVLVYDITDRGSFEEVLPLKNILDEIK-KPKNVTLILVGNKADLDH---------------------------------- 120 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSCCCEEEEEECGGGGG----------------------------------
T ss_pred ceeecccCCccchhhhhhhcccccccc-cccCcceeeeccchhhhh----------------------------------
Confidence 999999999999999999887665543 224677777777777653
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.|.|+.++++.+|+.++++|+||
T Consensus 121 ---------------------------------------------------------~r~V~~~e~~~~a~~~~~~~~e~ 143 (168)
T d2atva1 121 ---------------------------------------------------------SRQVSTEEGEKLATELACAFYEC 143 (168)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHHTSEEEEC
T ss_pred ---------------------------------------------------------hccCcHHHHHHHHHHhCCeEEEE
Confidence 34456778889999999999999
Q ss_pred ccCCCc-CHHHHHHHHHHHh
Q psy16673 330 SAKDNY-NIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~-nv~elf~~i~~~~ 348 (373)
||++|. ||+++|..|++..
T Consensus 144 Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 144 SACTGEGNITEIFYELCREV 163 (168)
T ss_dssp CTTTCTTCHHHHHHHHHHHH
T ss_pred ccccCCcCHHHHHHHHHHHH
Confidence 999998 6999999999864
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-33 Score=235.24 Aligned_cols=162 Identities=31% Similarity=0.549 Sum_probs=143.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+++.|...+.+++++.+.....+++..+.
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSV------------------------------ 52 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE------------------------------
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEe------------------------------
Confidence 68999999999999999999999999999999999998888888888877
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..++..+++++++
T Consensus 53 -------------------------------------------------------l~~~d~~g~~~~~~~~~~~~~~a~~ 77 (167)
T d1kaoa_ 53 -------------------------------------------------------LEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp -------------------------------------------------------EEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred -------------------------------------------------------eccccCCCccccccchHHHhhcccc
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+++..|+..+..... .+++|+++||||+|+..
T Consensus 78 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~---------------------------------- 122 (167)
T d1kaoa_ 78 FILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES---------------------------------- 122 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG----------------------------------
T ss_pred eeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhh----------------------------------
Confidence 9999999999999999999998876542 25688888888888764
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.+++.++++|+||
T Consensus 123 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~ 145 (167)
T d1kaoa_ 123 ---------------------------------------------------------EREVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHHTSCEEEE
T ss_pred ---------------------------------------------------------cccchHHHHHHHHHHcCCeEEEE
Confidence 12234456778888889999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|+.|++..
T Consensus 146 Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 146 SAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999853
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-33 Score=235.54 Aligned_cols=161 Identities=27% Similarity=0.417 Sum_probs=132.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+|+|++|||||||++||+++.|.+.+.||.. +...+....++..+.
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 53 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN----------------------------- 53 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEE-----------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccce-----------------------------
Confidence 58999999999999999999999999999999988 556677777777777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|++++..++..+++++|
T Consensus 54 --------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~~ 77 (167)
T d1z08a1 54 --------------------------------------------------------LAIWDTAGQERFHALGPIYYRDSN 77 (167)
T ss_dssp --------------------------------------------------------EEEEECCCC-------CCSSTTCS
T ss_pred --------------------------------------------------------eeeeccCCcceecccchhhccCCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.||+++..|+..+..... ...|++++|||+|+.
T Consensus 78 ~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~---------------------------------- 121 (167)
T d1z08a1 78 GAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLE---------------------------------- 121 (167)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGG----------------------------------
T ss_pred eeEEEEeCCchhHHHhhhhhhhhcccccc--cccceeeeccccccc----------------------------------
Confidence 99999999999999999999987765542 455666666666654
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
..|.|+.++++.+++.++++|+|
T Consensus 122 ---------------------------------------------------------~~~~v~~~e~~~~a~~~~~~~~e 144 (167)
T d1z08a1 122 ---------------------------------------------------------KERHVSIQEAESYAESVGAKHYH 144 (167)
T ss_dssp ---------------------------------------------------------GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred ---------------------------------------------------------cccccchHHHHHHHHHcCCeEEE
Confidence 34556677888999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++.+
T Consensus 145 ~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 145 TSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-32 Score=233.48 Aligned_cols=162 Identities=31% Similarity=0.524 Sum_probs=139.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+.+.|.+.+.|++++.+.+.+.+++..+.
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCM------------------------------ 52 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEE------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEE------------------------------
Confidence 68999999999999999999999999999999999887777777777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+++.+++++++
T Consensus 53 -------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~~~ 77 (167)
T d1c1ya_ 53 -------------------------------------------------------LEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp -------------------------------------------------------EEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred -------------------------------------------------------eccccccCcccccccccccccccce
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.||+++..|+..+.+... .+++|+++||||+|+..
T Consensus 78 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~---------------------------------- 122 (167)
T d1c1ya_ 78 FALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED---------------------------------- 122 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG----------------------------------
T ss_pred eEEeeeccchhhhHhHHHHHHHHHHhcC-CCCCeEEEEEEecCccc----------------------------------
Confidence 9999999999999999999998877642 35788888888888764
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh-cCCeEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~-~~~~~~E 328 (373)
.+.++.+++..+++. .+++|+|
T Consensus 123 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e 145 (167)
T d1c1ya_ 123 ---------------------------------------------------------ERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHTTSCEEEE
T ss_pred ---------------------------------------------------------ccccchhHHHHHHHHhCCCEEEE
Confidence 122234455666655 4789999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++.+
T Consensus 146 ~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999853
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-32 Score=234.31 Aligned_cols=172 Identities=26% Similarity=0.431 Sum_probs=144.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.||+|+|++|||||||++||+.+.|++.+.||+++.+.+...+++..+.
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 51 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVE------------------------------ 51 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEE------------------------------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecccccccccccee------------------------------
Confidence 47999999999999999999999999999999999888888888877777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++|+
T Consensus 52 -------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~~ 76 (177)
T d1kmqa_ 52 -------------------------------------------------------LALWDTAGLEDYDRLRPLSYPDTDV 76 (177)
T ss_dssp -------------------------------------------------------EEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred -------------------------------------------------------eeccccCccchhcccchhhcccchh
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHH-HHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYF-EEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~-~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.||+++..|+ ..+.... +++|++|||||+|+.+. +...
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~-~~~~--------------------------- 125 (177)
T d1kmqa_ 77 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND-EHTR--------------------------- 125 (177)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECGGGTTC-HHHH---------------------------
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHHhC---CCCceEEeeecccccch-hhHH---------------------------
Confidence 99999999999999988754 4444443 68999999999999752 1100
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~ 327 (373)
+.+.. ...+.++.++++.+++.++ ++|+
T Consensus 126 ---------------------~~~~~------------------------------~~~~~v~~~e~~~~a~~~~~~~~~ 154 (177)
T d1kmqa_ 126 ---------------------RELAK------------------------------MKQEPVKPEEGRDMANRIGAFGYM 154 (177)
T ss_dssp ---------------------HHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred ---------------------HHHHH------------------------------hhcccccHHHHHHHHHHcCCcEEE
Confidence 01111 1123457788999999888 5899
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 155 E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 155 ECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999975
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-32 Score=239.34 Aligned_cols=172 Identities=24% Similarity=0.425 Sum_probs=144.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+.+.|+..+.||+++.+.+....++..+.
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT------------------------------ 52 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEE------------------------------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceee------------------------------
Confidence 47999999999999999999999999999999999888888888777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..++..+++++|+
T Consensus 53 -------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~~ 77 (191)
T d2ngra_ 53 -------------------------------------------------------LGLFDTAGQEDYDRLRPLSYPQTDV 77 (191)
T ss_dssp -------------------------------------------------------EEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred -------------------------------------------------------eeccccccchhhhhhhhhcccccce
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHH-HHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYF-EEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~-~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.||+++..|+ ..+.... +++|+++||||+|+... +.
T Consensus 78 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~~i~lvgnK~Dl~~~-~~----------------------------- 124 (191)
T d2ngra_ 78 FLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD-PS----------------------------- 124 (191)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECGGGGGC-HH-----------------------------
T ss_pred eecccccchHHHHHHHHHHHHHHHhhcC---CCCceEEEecccccccc-ch-----------------------------
Confidence 99999999999999998754 4444433 68999999999999752 00
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-CCeEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-~~~~~ 327 (373)
+.++.+....+.|+.++++.+++.. +++|+
T Consensus 125 -------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (191)
T d2ngra_ 125 -------------------------------------------------TIEKLAKNKQKPITPETAEKLARDLKAVKYV 155 (191)
T ss_dssp -------------------------------------------------HHHHHHTTTCCCCCHHHHHHHHHHTTCSCEE
T ss_pred -------------------------------------------------hhhhhhhcccccccHHHHHHHHHHcCCCeEE
Confidence 0011112234456788999999875 58999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 156 e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 156 ECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999865
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.2e-32 Score=230.86 Aligned_cols=161 Identities=27% Similarity=0.384 Sum_probs=138.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc-eeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL-YSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+.+||+|+|++|||||||++||+.+.|.+.+.+|..+. .......+.....
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 54 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK---------------------------- 54 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccc----------------------------
Confidence 36899999999999999999999999999999998844 4556666666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++++..++..++.++
T Consensus 55 ---------------------------------------------------------~~i~d~~g~~~~~~~~~~~~~~~ 77 (167)
T d1z0ja1 55 ---------------------------------------------------------FLIWDTAGLERFRALAPMYYRGS 77 (167)
T ss_dssp ---------------------------------------------------------EEEEEECCSGGGGGGTHHHHTTC
T ss_pred ---------------------------------------------------------eeeeecCCchhhhHHHHHHHhhc
Confidence 89999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+..... +..|+++||||+|+.+
T Consensus 78 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~-------------------------------- 123 (167)
T d1z0ja1 78 AAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD-------------------------------- 123 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG--------------------------------
T ss_pred cceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhcc--------------------------------
Confidence 999999999999999999999988776542 5566666666666643
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.|.++.++++.+++.++++|+
T Consensus 124 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 144 (167)
T d1z0ja1 124 -----------------------------------------------------------VREVMERDAKDYADSIHAIFV 144 (167)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEE
T ss_pred -----------------------------------------------------------ccchhHHHHHHHHHHcCCEEE
Confidence 344566778889999999999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
||||++|.||+++|..|++.
T Consensus 145 e~SAk~~~nV~e~f~~l~~~ 164 (167)
T d1z0ja1 145 ETSAKNAININELFIEISRR 164 (167)
T ss_dssp ECBTTTTBSHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999999985
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-32 Score=230.40 Aligned_cols=159 Identities=29% Similarity=0.561 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
|||+++|++|||||||++||+++.|+..+.++++ +.+......++..+.
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR------------------------------ 50 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEE------------------------------
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCcee------------------------------
Confidence 6999999999999999999999999999999987 555566666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+...+..++.++++
T Consensus 51 -------------------------------------------------------~~i~d~~g~~~~~~~~~~~~~~~~~ 75 (164)
T d1yzqa1 51 -------------------------------------------------------LQLWDTAGQERFRSLIPSYIRDSAA 75 (164)
T ss_dssp -------------------------------------------------------EEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred -------------------------------------------------------eeecccCCcchhccchHHHhhccce
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+..... +.+|+++||||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~i~~~~~~~~~~~~--~~~~iilvgnK~Dl~~---------------------------------- 119 (164)
T d1yzqa1 76 AVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLAD---------------------------------- 119 (164)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGG----------------------------------
T ss_pred EEEeeccccccchhhhHhhHHHHHHhcC--CCceEEEEecccchhh----------------------------------
Confidence 9999999999999999999998877653 5678888888888754
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.+++.++++|+||
T Consensus 120 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~ 142 (164)
T d1yzqa1 120 ---------------------------------------------------------KRQVSIEEGERKAKELNVMFIET 142 (164)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ---------------------------------------------------------hhhhhHHHHHHHHHHcCCEEEEe
Confidence 22334567788899999999999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.|++.
T Consensus 143 SAk~g~~v~e~f~~i~~~ 160 (164)
T d1yzqa1 143 SAKAGYNVKQLFRRVAAA 160 (164)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 999999999999999984
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=5.4e-32 Score=231.06 Aligned_cols=161 Identities=27% Similarity=0.485 Sum_probs=140.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+++.|+..+.++.. +++.+.+.+++..+.
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 55 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK----------------------------- 55 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEE-----------------------------
Confidence 58999999999999999999999999998888887 777788888888777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|++.|..+++.++++++
T Consensus 56 --------------------------------------------------------l~i~Dt~G~e~~~~~~~~~~~~~~ 79 (171)
T d2ew1a1 56 --------------------------------------------------------LQIWDTAGQERFRSITQSYYRSAN 79 (171)
T ss_dssp --------------------------------------------------------EEEEEECCSGGGHHHHGGGSTTCS
T ss_pred --------------------------------------------------------EEEEECCCchhhHHHHHHHHhccc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+.+... ..+|+++||||+|+.+
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~--------------------------------- 124 (171)
T d2ew1a1 80 ALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE--------------------------------- 124 (171)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG---------------------------------
T ss_pred eEEEeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeeccccc---------------------------------
Confidence 99999999999999999999988876532 4677777777777653
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.++.++++.+++.++++|+|
T Consensus 125 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~ 146 (171)
T d2ew1a1 125 ----------------------------------------------------------RREVSQQRAEEFSEAQDMYYLE 146 (171)
T ss_dssp ----------------------------------------------------------GCSSCHHHHHHHHHHHTCCEEE
T ss_pred ----------------------------------------------------------ccchhhhHHHHHHHhCCCEEEE
Confidence 2334556678888889999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||+||.||+++|..+++..
T Consensus 147 ~SAktg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 147 TSAKESDNVEKLFLDLACRL 166 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.8e-32 Score=235.49 Aligned_cols=176 Identities=24% Similarity=0.456 Sum_probs=145.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.++.+||+|+|++|||||||++||+.+.|...+.||+++.+.+.+..++..+.
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~--------------------------- 54 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN--------------------------- 54 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEE---------------------------
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceE---------------------------
Confidence 35679999999999999999999999999999999999888888888888777
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++++
T Consensus 55 ----------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~ 76 (183)
T d1mh1a_ 55 ----------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQ 76 (183)
T ss_dssp ----------------------------------------------------------EEEECCCCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEeecccccccchhhhhhcccc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
++++++|||++++.||+++.. |...++... .++|+++||||+|+... +.+..
T Consensus 77 ~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~---~~~piilvgnK~Dl~~~-~~~~~----------------------- 129 (183)
T d1mh1a_ 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KDTIE----------------------- 129 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTC-HHHHH-----------------------
T ss_pred cceeeeeeccchHHHHHHHHHHHHHHHHHhC---CCCcEEEEeecccchhh-hhhhh-----------------------
Confidence 999999999999999999987 555555443 67999999999999752 11110
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-C
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-F 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~ 324 (373)
..... ..+.+...++..+++.++ +
T Consensus 130 -------------------------~~~~~------------------------------~~~~~~~~~~~~~a~~~~~~ 154 (183)
T d1mh1a_ 130 -------------------------KLKEK------------------------------KLTPITYPQGLAMAKEIGAV 154 (183)
T ss_dssp -------------------------HHHHT------------------------------TCCCCCHHHHHHHHHHTTCS
T ss_pred -------------------------hhhhc------------------------------cccchhhHHHHHHHHHcCCc
Confidence 11110 112234557788888776 8
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+||||||++|.||+++|+.|++.+.
T Consensus 155 ~~~E~SAk~~~~V~e~F~~l~~~il 179 (183)
T d1mh1a_ 155 KYLECSALTQRGLKTVFDEAIRAVL 179 (183)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred eEEEcCCCCCcCHHHHHHHHHHHHc
Confidence 9999999999999999999999753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9.7e-32 Score=228.36 Aligned_cols=161 Identities=30% Similarity=0.533 Sum_probs=142.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+++.|+..+.+++++.+...+...+..+.
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 52 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL------------------------------ 52 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEE------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeee------------------------------
Confidence 58999999999999999999999999999999999877777777777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+...+..+++++++
T Consensus 53 -------------------------------------------------------l~~~d~~~~~~~~~~~~~~~~~~~~ 77 (166)
T d1ctqa_ 53 -------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTGEG 77 (166)
T ss_dssp -------------------------------------------------------EEEEEECCCGGGHHHHHHHHHHCSE
T ss_pred -------------------------------------------------------eeeeeccCccccccchhhhhhcccc
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.+... .+++|+++||||+|+.. +
T Consensus 78 ~iiv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~--~------------------------------- 123 (166)
T d1ctqa_ 78 FLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDLAA--R------------------------------- 123 (166)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-CSSCCEEEEEECTTCSC--C-------------------------------
T ss_pred cceeecccccccHHHHHHHHHHHHHhcC-CCCCeEEEEeccccccc--c-------------------------------
Confidence 9999999999999999999999988763 25789999999999853 1
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.++.++++.+++..+++|+||
T Consensus 124 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~e~ 144 (166)
T d1ctqa_ 124 -----------------------------------------------------------TVESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp -----------------------------------------------------------CSCHHHHHHHHHHHTCCEEEC
T ss_pred -----------------------------------------------------------cccHHHHHHHHHHhCCeEEEE
Confidence 123456677888889999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|..|++.+
T Consensus 145 Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999854
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.1e-31 Score=228.12 Aligned_cols=160 Identities=26% Similarity=0.416 Sum_probs=139.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+|+|++|||||||++||+++.|...+.++.. +.......+++..+.
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 54 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK----------------------------- 54 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEE-----------------------------
Confidence 58999999999999999999999999998888777 666677777777777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|++.+..++..+++++|
T Consensus 55 --------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~d 78 (166)
T d1z0fa1 55 --------------------------------------------------------LQIWDTAGQERFRAVTRSYYRGAA 78 (166)
T ss_dssp --------------------------------------------------------EEEEECTTGGGTCHHHHHHHHTCS
T ss_pred --------------------------------------------------------EEEeccCCchhHHHHHHHHhcCCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||+++..||+.+..|+..+.+... ..+|++++|||+|+..
T Consensus 79 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~--------------------------------- 123 (166)
T d1z0fa1 79 GALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA--------------------------------- 123 (166)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG---------------------------------
T ss_pred EEEEEeccCchHHHHHHHHHHHHHHhhcc--ccceEEEEcccccchh---------------------------------
Confidence 99999999999999999999988876542 5677778888887753
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++++.+++.++++|+|
T Consensus 124 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e 145 (166)
T d1z0fa1 124 ----------------------------------------------------------QRDVTYEEAKQFAEENGLLFLE 145 (166)
T ss_dssp ----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEEE
T ss_pred ----------------------------------------------------------hcccHHHHHHHHHHHcCCEEEE
Confidence 2233455778888999999999
Q ss_pred eccCCCcCHHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~ 347 (373)
|||++|.||+++|+.|++.
T Consensus 146 ~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 146 ASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999984
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-31 Score=227.30 Aligned_cols=161 Identities=27% Similarity=0.442 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||++||+++.|+..+.++.+ +........+...+.
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 56 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK---------------------------- 56 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEE----------------------------
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEE----------------------------
Confidence 468999999999999999999999999999999888 445566666666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..++..+++++
T Consensus 57 ---------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~ 79 (170)
T d1r2qa_ 57 ---------------------------------------------------------FEIWDTAGQERYHSLAPMYYRGA 79 (170)
T ss_dssp ---------------------------------------------------------EEEEEECCSGGGGGGHHHHHTTC
T ss_pred ---------------------------------------------------------EEeccCCCchhhhhhHHHHhhCc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||+++..+|+.+..|+..+.+... +++|+++||||+|+..
T Consensus 80 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~-------------------------------- 125 (170)
T d1r2qa_ 80 QAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN-------------------------------- 125 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG--------------------------------
T ss_pred ceEEEEeccchhhHHHHHHHHhhhhhhccC--CCceEEeecccccccc--------------------------------
Confidence 999999999999999999999988876532 5677777777777754
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++.++++|+
T Consensus 126 -----------------------------------------------------------~~~v~~e~~~~~~~~~~~~~~ 146 (170)
T d1r2qa_ 126 -----------------------------------------------------------KRAVDFQEAQSYADDNSLLFM 146 (170)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEE
T ss_pred -----------------------------------------------------------cccccHHHHHHHHHhcCCEEE
Confidence 334566678888999999999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
||||++|.||+++|+.|++.
T Consensus 147 e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 147 ETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHHT
T ss_pred EeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1.8e-31 Score=227.48 Aligned_cols=161 Identities=27% Similarity=0.449 Sum_probs=138.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||+.+.|...+.++.+ +.+.+.+......+.
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 55 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK----------------------------- 55 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEE-----------------------------
Confidence 58999999999999999999999999999988887 667777777777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|+++|..+++.+++++|
T Consensus 56 --------------------------------------------------------l~~wDt~G~e~~~~~~~~~~~~ad 79 (169)
T d3raba_ 56 --------------------------------------------------------LQIWDTAGQERYRTITTAYYRGAM 79 (169)
T ss_dssp --------------------------------------------------------EEEEEECCSGGGHHHHHTTTTTCC
T ss_pred --------------------------------------------------------EEEEECCCchhhHHHHHHHHhcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.++..+..|+..+.... ....|++++|||.|+.+
T Consensus 80 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~--------------------------------- 124 (169)
T d3raba_ 80 GFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMED--------------------------------- 124 (169)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC--CSCCEEEEEEECTTCGG---------------------------------
T ss_pred EEEEEEECccchhhhhhhhhhhhhhccc--CCcceEEEEEeeccccc---------------------------------
Confidence 9999999999999999999988776553 25677777777777653
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.++.++++.+++.++++|+|
T Consensus 125 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e 146 (169)
T d3raba_ 125 ----------------------------------------------------------ERVVSSERGRQLADHLGFEFFE 146 (169)
T ss_dssp ----------------------------------------------------------GCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------ccccchhhhHHHHHHcCCEEEE
Confidence 3334556677888889999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++.+
T Consensus 147 ~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 147 ASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-32 Score=233.78 Aligned_cols=118 Identities=26% Similarity=0.515 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||+.+.|...+.||++ +++.+.+..++..+.
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~----------------------------- 53 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK----------------------------- 53 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEE-----------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccccccccc-----------------------------
Confidence 58999999999999999999999999999999998 777788877777777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.+..++..++++++
T Consensus 54 --------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~ 77 (170)
T d1i2ma_ 54 --------------------------------------------------------FNVWDTAGQEKFGGLRDGYYIQAQ 77 (170)
T ss_dssp --------------------------------------------------------EEEEECTTHHHHSSCGGGGTTTCC
T ss_pred --------------------------------------------------------ccccccccccccceecchhccccc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.||+++..|+..+.+.. +++|+++||||+|+..
T Consensus 78 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~ 121 (170)
T d1i2ma_ 78 CAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 121 (170)
T ss_dssp EEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSC
T ss_pred chhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhh
Confidence 9999999999999999999999988765 6899999999999864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-31 Score=227.23 Aligned_cols=163 Identities=29% Similarity=0.441 Sum_probs=143.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||+++.|.+.+.+|.+ ++.++.+..++..+.
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~----------------------------- 53 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVK----------------------------- 53 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccccccccc-----------------------------
Confidence 58999999999999999999999999999999988 566788888888777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|++.+..++..++.++|
T Consensus 54 --------------------------------------------------------l~i~d~~g~~~~~~~~~~~~~~~~ 77 (170)
T d1ek0a_ 54 --------------------------------------------------------FEIWDTAGQERFASLAPMYYRNAQ 77 (170)
T ss_dssp --------------------------------------------------------EEEEEECCSGGGGGGHHHHHTTCS
T ss_pred --------------------------------------------------------ccccccCCchhHHHHHHHHHhccc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+++..|+.++..... ...|++++|||+|+.+.
T Consensus 78 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~v~nk~d~~~~-------------------------------- 123 (170)
T d1ek0a_ 78 AALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDMLQE-------------------------------- 123 (170)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS--------------------------------
T ss_pred eEEEEEeCCcccchhhhhhhhhhhccccc--cccceeeeecccccccc--------------------------------
Confidence 99999999999999999999987766543 57888899999998641
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
...+.++.++++.+++.++++|+|
T Consensus 124 --------------------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~e 147 (170)
T d1ek0a_ 124 --------------------------------------------------------GGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp --------------------------------------------------------SCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred --------------------------------------------------------cchhhhhHHHHHHHHHHcCCEEEE
Confidence 112345667888999999999999
Q ss_pred eccCCCcCHHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~ 347 (373)
|||++|.||+++|+.|++.
T Consensus 148 ~Sak~g~gV~e~F~~i~~~ 166 (170)
T d1ek0a_ 148 TSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTT
T ss_pred ecCCCCcCHHHHHHHHHHH
Confidence 9999999999999999874
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.1e-31 Score=231.00 Aligned_cols=173 Identities=20% Similarity=0.359 Sum_probs=143.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
++||+++|++|||||||++||+++.|++.+.||+.+.+.+.+.+++..+.
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 51 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE------------------------------ 51 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEE------------------------------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEe------------------------------
Confidence 57999999999999999999999999999999999888888888777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.+..+++.+++++|+
T Consensus 52 -------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~~ 76 (179)
T d1m7ba_ 52 -------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPDSDA 76 (179)
T ss_dssp -------------------------------------------------------EEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred -------------------------------------------------------eccccccccccccccccchhhhhhh
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.||+.+..|+........ +++|+++||||+|+......
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl~~~~~~------------------------------ 124 (179)
T d1m7ba_ 77 VLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVST------------------------------ 124 (179)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHH------------------------------
T ss_pred hheeeecccCCCHHHHHHHHHHHHhccC--CcceEEEEEecccccccchh------------------------------
Confidence 9999999999999999875544433322 68999999999998752000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~E 328 (373)
...... ...+.|+.++++.+++..+ ++|+|
T Consensus 125 -------------------~~~~~~------------------------------~~~~~V~~~e~~~~a~~~~~~~y~E 155 (179)
T d1m7ba_ 125 -------------------LVELSN------------------------------HRQTPVSYDQGANMAKQIGAATYIE 155 (179)
T ss_dssp -------------------HHHHHT------------------------------TTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred -------------------hHHHhh------------------------------hhcCcchHHHHHHHHHHhCCCeEEE
Confidence 000000 1134567888899998876 68999
Q ss_pred eccCCCcC-HHHHHHHHHHHh
Q psy16673 329 CSAKDNYN-IKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~n-v~elf~~i~~~~ 348 (373)
|||++|.| |+++|+.+++.+
T Consensus 156 ~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 156 CSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp CBTTTBHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCHHHHHHHHHHHH
Confidence 99999996 999999999865
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.2e-31 Score=224.81 Aligned_cols=164 Identities=29% Similarity=0.406 Sum_probs=130.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCC-ceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+..|||+++|++|||||||++||+.+.+.. ...++++ +++.+.+.+++..+.
T Consensus 1 ~~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 54 (172)
T d2g3ya1 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT-------------------------- 54 (172)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEE--------------------------
T ss_pred CCEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceee--------------------------
Confidence 357999999999999999999999776643 3334444 788888888877766
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeec---cccccchhHhHHh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILD---TCGDLQFPAMRRL 162 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D---~~g~~~~~~~~~~ 162 (373)
+.+|| ++|+++| ++..
T Consensus 55 -----------------------------------------------------------~~~~d~~~~~g~e~~--~~~~ 73 (172)
T d2g3ya1 55 -----------------------------------------------------------IILLDMWENKGENEW--LHDH 73 (172)
T ss_dssp -----------------------------------------------------------EEEECCTTTTHHHHH--HHHC
T ss_pred -----------------------------------------------------------eeeeccccccccccc--cccc
Confidence 55555 5667666 6777
Q ss_pred hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhh
Q psy16673 163 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRL 242 (373)
Q Consensus 163 ~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~ 242 (373)
+++++|++++|||++++.+|+++..|+..+..... .+++|+++||||+|+..
T Consensus 74 ~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~--------------------------- 125 (172)
T d2g3ya1 74 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR--------------------------- 125 (172)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG---------------------------
T ss_pred cccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccc---------------------------
Confidence 89999999999999999999999999998876542 25677777777777654
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
.|.++.++++.++..+
T Consensus 126 ----------------------------------------------------------------~~~v~~~~~~~~a~~~ 141 (172)
T d2g3ya1 126 ----------------------------------------------------------------CREVSVSEGRACAVVF 141 (172)
T ss_dssp ----------------------------------------------------------------GCCSCHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------cccccHHHHHHHHHHc
Confidence 2344556778889999
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+++|+||||++|.||+++|+.|++.++.
T Consensus 142 ~~~~~e~Sak~g~~i~~~f~~l~~~i~~ 169 (172)
T d2g3ya1 142 DCKFIETSAAVQHNVKELFEGIVRQVRL 169 (172)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999996543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.2e-31 Score=223.85 Aligned_cols=161 Identities=29% Similarity=0.436 Sum_probs=133.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+|+|++|||||||++||+++.|...+.++.. +.+.......+..+.
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 53 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIK----------------------------- 53 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEE-----------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEE-----------------------------
Confidence 48999999999999999999999999998888876 445555555666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.+..++..++.++|
T Consensus 54 --------------------------------------------------------~~i~d~~g~~~~~~~~~~~~~~~d 77 (173)
T d2a5ja1 54 --------------------------------------------------------LQIWDTAGQESFRSITRSYYRGAA 77 (173)
T ss_dssp --------------------------------------------------------EEEECCTTGGGTSCCCHHHHTTCS
T ss_pred --------------------------------------------------------EEeecccCccchhhHHHHHhhccC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+.+... .++|+++||||+|+..
T Consensus 78 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~--------------------------------- 122 (173)
T d2a5ja1 78 GALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES--------------------------------- 122 (173)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG---------------------------------
T ss_pred EEEEEEeecChHHHHhHHHHHHHHHHhCC--CCCeEEEEecCCchhh---------------------------------
Confidence 99999999999999999999998877643 5678888888888753
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++++.+++..+++|+|
T Consensus 123 ----------------------------------------------------------~~~~~~~~~~~~a~~~~~~~~e 144 (173)
T d2a5ja1 123 ----------------------------------------------------------RRDVKREEGEAFAREHGLIFME 144 (173)
T ss_dssp ----------------------------------------------------------GCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------hhhhHHHHHHHHHHHcCCEEEE
Confidence 2223455778888889999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++.+
T Consensus 145 ~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 145 TSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp ECTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999954
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.4e-30 Score=221.29 Aligned_cols=162 Identities=27% Similarity=0.421 Sum_probs=138.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc-eeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL-YSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||+++.|.+.+.++.... ....+..+...+.
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 55 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK----------------------------- 55 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCccee-----------------------------
Confidence 5899999999999999999999999999999888743 4455555666555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++++..++..++++++
T Consensus 56 --------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~~ 79 (174)
T d2bmea1 56 --------------------------------------------------------LQIWDTAGQERFRSVTRSYYRGAA 79 (174)
T ss_dssp --------------------------------------------------------EEEEEECCSGGGHHHHHTTSTTCS
T ss_pred --------------------------------------------------------EEEEECCCchhhhhhHHHHhhhCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||.+++.+|..+..|+..+..... .++|+++||||+|+..
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~--------------------------------- 124 (174)
T d2bmea1 80 GALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA--------------------------------- 124 (174)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG---------------------------------
T ss_pred EEEEEEecccchhHHHHhhhhcccccccC--CceEEEEEEecccccc---------------------------------
Confidence 99999999999999999999998877643 5788888888888753
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+....+..+++..+++|+|
T Consensus 125 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e 146 (174)
T d2bmea1 125 ----------------------------------------------------------DREVTFLEASRFAQENELMFLE 146 (174)
T ss_dssp ----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEEE
T ss_pred ----------------------------------------------------------hhchhhhHHHHHHHhCCCEEEE
Confidence 1223344567788888999999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
|||++|.||+++|+.+++.+.
T Consensus 147 ~Sak~~~gi~e~f~~l~~~i~ 167 (174)
T d2bmea1 147 TSALTGENVEEAFVQCARKIL 167 (174)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999998653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.2e-31 Score=227.45 Aligned_cols=173 Identities=24% Similarity=0.349 Sum_probs=134.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+|+|++|||||||++||+++.|.+.+.++.. ++..+.+.++......
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------------- 56 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG---------------------------- 56 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC---------------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccc----------------------------
Confidence 58999999999999999999999999999888887 4455555544332210
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
.......+.+.+||++|+++|..++..++++++
T Consensus 57 -----------------------------------------------~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~~ 89 (186)
T d2f7sa1 57 -----------------------------------------------SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM 89 (186)
T ss_dssp -------------------------------------------------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCC
T ss_pred -----------------------------------------------cccccceEEeccccCCcchhhHHHHHHHHhcCC
Confidence 000111234999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+.++.... ....+|+++||||+|+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl----------------------------------- 133 (186)
T d2f7sa1 90 GFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADL----------------------------------- 133 (186)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTC-----------------------------------
T ss_pred EEEEEEeccccccceeeeeccchhhhhc-cCCCceEEEEeeeccc-----------------------------------
Confidence 9999999999999999999987654332 1234555555555555
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
...+.|+.++++.+++.++++|+|
T Consensus 134 --------------------------------------------------------~~~~~v~~~e~~~~~~~~~~~~~e 157 (186)
T d2f7sa1 134 --------------------------------------------------------PDQREVNERQARELADKYGIPYFE 157 (186)
T ss_dssp --------------------------------------------------------GGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred --------------------------------------------------------hhhhcchHHHHHHHHHHcCCEEEE
Confidence 444556777888999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
|||++|.||+++|+.+++.+.
T Consensus 158 ~Sak~~~~i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 158 TSAATGQNVEKAVETLLDLIM 178 (186)
T ss_dssp EBTTTTBTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.9e-30 Score=219.40 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=134.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
-+.+||+++|++|||||||+++|+++.|.. +.++..+.+.+.+.+++..+.
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~---------------------------- 53 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHL---------------------------- 53 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEE----------------------------
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEE----------------------------
Confidence 357999999999999999999999999965 557777778888888888777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+. |++++
T Consensus 54 ---------------------------------------------------------l~i~Dt~g~~~~~-----~~~~a 71 (175)
T d2bmja1 54 ---------------------------------------------------------VLIREEAGAPDAK-----FSGWA 71 (175)
T ss_dssp ---------------------------------------------------------EEEEECSSCCCHH-----HHHHC
T ss_pred ---------------------------------------------------------EEEeecccccccc-----ccccc
Confidence 9999999998753 78899
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.||+++..|++++...+.. ...+|+++||||.|+...
T Consensus 72 d~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~------------------------------ 121 (175)
T d2bmja1 72 DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS------------------------------ 121 (175)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSS------------------------------
T ss_pred ceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchh------------------------------
Confidence 9999999999999999999999998876532 356788899988887531
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh-hhcCCe
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE-QRQDFQ 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a-~~~~~~ 325 (373)
..+.++.++++.++ +.++++
T Consensus 122 -----------------------------------------------------------~~~~v~~~~~~~~~~~~~~~~ 142 (175)
T d2bmja1 122 -----------------------------------------------------------SPRVVGDARARALCADMKRCS 142 (175)
T ss_dssp -----------------------------------------------------------SCCCSCHHHHHHHHHTSTTEE
T ss_pred -----------------------------------------------------------hhcchhHHHHHHHHHHhCCCe
Confidence 12233455666664 556899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+||||++|.||+++|..+++.+..
T Consensus 143 ~~e~SAk~~~~v~~~F~~l~~~i~~ 167 (175)
T d2bmja1 143 YYETCATYGLNVDRVFQEVAQKVVT 167 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999986543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5e-30 Score=217.21 Aligned_cols=159 Identities=28% Similarity=0.504 Sum_probs=134.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||+.+.|+..+.++.+ ....+...+......
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 52 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK----------------------------- 52 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceE-----------------------------
Confidence 58999999999999999999999999999999888 445677777777766
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhhhhhc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLSIATA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~~~~~ 167 (373)
+.+||++|...+.. .++.++.++
T Consensus 53 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (165)
T d1z06a1 53 --------------------------------------------------------IQLWDTAGQERFRKSMVQHYYRNV 76 (165)
T ss_dssp --------------------------------------------------------EEEEECCCSHHHHTTTHHHHHTTC
T ss_pred --------------------------------------------------------EEEEeccCchhhccccceeeecCC
Confidence 99999999887754 577889999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+.++.+... .+++|+++||||+|+..
T Consensus 77 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pi~lvgnK~Dl~~-------------------------------- 123 (165)
T d1z06a1 77 HAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS-------------------------------- 123 (165)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG--------------------------------
T ss_pred CceEEEEEeehhhhhhhhhhhhHHHHhhcc-CCCCeEEEEeccccchh--------------------------------
Confidence 999999999999999999999999887642 25677777777777754
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.|+.++++.+++.++++|+
T Consensus 124 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 144 (165)
T d1z06a1 124 -----------------------------------------------------------AIQVPTDLAQKFADTHSMPLF 144 (165)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCCEE
T ss_pred -----------------------------------------------------------ccchhHHHHHHHHHHCCCEEE
Confidence 334566678889999999999
Q ss_pred EeccCCC---cCHHHHHHHHH
Q psy16673 328 ECSAKDN---YNIKEVFRTFL 345 (373)
Q Consensus 328 E~SAktg---~nv~elf~~i~ 345 (373)
||||||| .||+++|+.|+
T Consensus 145 e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 145 ETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC
T ss_pred EEecccCCcCcCHHHHHHHhC
Confidence 9999984 59999999874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.4e-30 Score=222.32 Aligned_cols=161 Identities=29% Similarity=0.472 Sum_probs=139.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceec-ceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-LYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+|+|++|||||||+++|+++.|+..+.++.+. .....+.+++..+.
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~----------------------------- 56 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK----------------------------- 56 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEE-----------------------------
Confidence 589999999999999999999999999999999884 45677778887777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|+++|..++..++++++
T Consensus 57 --------------------------------------------------------l~i~Dt~G~e~~~~~~~~~~~~a~ 80 (194)
T d2bcgy1 57 --------------------------------------------------------LQIWDTAGQERFRTITSSYYRGSH 80 (194)
T ss_dssp --------------------------------------------------------EEEECCTTTTTTTCCCGGGGTTCS
T ss_pred --------------------------------------------------------EEEEECCCchhhHHHHHHHhccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|..+..|+..+.+.. ...+|+++||||.|+.+
T Consensus 81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~D~~~--------------------------------- 125 (194)
T d2bcgy1 81 GIIIVYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKD--------------------------------- 125 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTT---------------------------------
T ss_pred EEEEEEeCcchhhhhhHhhhhhhhhhcc--cCCceEEEEEecccccc---------------------------------
Confidence 9999999999999999999988887654 26778888888888764
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++...+++..+++|+|
T Consensus 126 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e 147 (194)
T d2bcgy1 126 ----------------------------------------------------------KRVVEYDVAKEFADANKMPFLE 147 (194)
T ss_dssp ----------------------------------------------------------TCCSCHHHHHHHHHHTTCCEEE
T ss_pred ----------------------------------------------------------ccchhHHHHhhhhhccCcceEE
Confidence 2223455667778888999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++..
T Consensus 148 ~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 148 TSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecCcCccHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.8e-30 Score=219.44 Aligned_cols=164 Identities=24% Similarity=0.401 Sum_probs=120.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc-eeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL-YSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+||+++|++|||||||+++|+++.|...+.++.+.. ........ ...+.
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---------------------------- 53 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT---------------------------- 53 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEE----------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCccccc----------------------------
Confidence 5899999999999999999999999999888887733 22222222 22223
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+...+..+++.+
T Consensus 54 ---------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~ 76 (175)
T d1ky3a_ 54 ---------------------------------------------------------MQVWDTAGQERFQSLGVAFYRGA 76 (175)
T ss_dssp ---------------------------------------------------------EEEECCC----------CCSTTC
T ss_pred ---------------------------------------------------------ceeeccCCchhhhhHHHHHhhcc
Confidence 89999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+++++|||++++.||+.+..|+.++...... ...+|+++||||+|+.+.
T Consensus 77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~----------------------------- 127 (175)
T d1ky3a_ 77 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES----------------------------- 127 (175)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------------------------
T ss_pred ceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh-----------------------------
Confidence 9999999999999999999999998876532 246778888888887641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-C
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-F 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~ 324 (373)
.+.++.++++.+++..+ +
T Consensus 128 -------------------------------------------------------------~~~v~~~~~~~~~~~~~~~ 146 (175)
T d1ky3a_ 128 -------------------------------------------------------------KKIVSEKSAQELAKSLGDI 146 (175)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTSC
T ss_pred -------------------------------------------------------------hcchhHHHHHHHHHHcCCC
Confidence 11234456677777775 8
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.|++.+
T Consensus 147 ~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 147 PLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999865
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.9e-30 Score=218.39 Aligned_cols=162 Identities=30% Similarity=0.473 Sum_probs=135.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||++||+++.|...+.++.. +.+...+..++..+.
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 54 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK---------------------------- 54 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEE----------------------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEE----------------------------
Confidence 358999999999999999999999999988888776 556677777777777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|+++|..++..++.++
T Consensus 55 ---------------------------------------------------------~~i~d~~g~e~~~~~~~~~~~~~ 77 (175)
T d2f9la1 55 ---------------------------------------------------------AQIWDTAGQERYRRITSAYYRGA 77 (175)
T ss_dssp ---------------------------------------------------------EEEEECSSGGGTTCCCHHHHTTC
T ss_pred ---------------------------------------------------------EEecccCCcHHHHHHHHHHhhcc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.||+.+..|+..+.+... +.+|+++||||+|+.+. +
T Consensus 78 ~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~--~~~piilvgnK~Dl~~~-~----------------------------- 125 (175)
T d2f9la1 78 VGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL-R----------------------------- 125 (175)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG-C-----------------------------
T ss_pred CeEEEEEECCCcccchhHHHHHHHHHHhcC--CCCcEEEEEeeeccccc-c-----------------------------
Confidence 999999999999999999999999987753 57899999999998751 1
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+..+.+..+.+..+++|+
T Consensus 126 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 144 (175)
T d2f9la1 126 -------------------------------------------------------------AVPTDEARAFAEKNNLSFI 144 (175)
T ss_dssp -------------------------------------------------------------CSCHHHHHHHHHHTTCEEE
T ss_pred -------------------------------------------------------------cchHHHHHHhhcccCceEE
Confidence 1122334555667788999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 145 e~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 145 ETSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHHHHH
Confidence 999999999999999999854
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.5e-30 Score=217.82 Aligned_cols=161 Identities=29% Similarity=0.460 Sum_probs=127.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCce-eccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRY-RSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~-~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+||+++|++|||||||++||+++.|...+ .++++ +.+...+..++..+.
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 57 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK---------------------------- 57 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEE----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEE----------------------------
Confidence 589999999999999999999999987655 44444 556667777777777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|++.+..++..+++++
T Consensus 58 ---------------------------------------------------------l~i~Dt~G~e~~~~~~~~~~~~~ 80 (170)
T d2g6ba1 58 ---------------------------------------------------------LQMWDTAGQERFRSVTHAYYRDA 80 (170)
T ss_dssp ---------------------------------------------------------EEEEECCCC--------CCGGGC
T ss_pred ---------------------------------------------------------EEEEECCCchhhHHHHHHhhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+.+... ...|+++||||.|+..
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~d~~~-------------------------------- 126 (170)
T d2g6ba1 81 HALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAH-------------------------------- 126 (170)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTS--------------------------------
T ss_pred ceeEEEecCCcccchhhhhhhhhhhhhccC--CCceEEEEEeeechhh--------------------------------
Confidence 999999999999999999999888776642 4567777777777654
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.+++..+++.++++|+
T Consensus 127 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 147 (170)
T d2g6ba1 127 -----------------------------------------------------------ERVVKREDGEKLAKEYGLPFM 147 (170)
T ss_dssp -----------------------------------------------------------CCCSCHHHHHHHHHHHTCCEE
T ss_pred -----------------------------------------------------------cccccHHHHHHHHHHcCCEEE
Confidence 233455677788888899999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.|++..
T Consensus 148 e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 148 ETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHc
Confidence 999999999999999999853
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-29 Score=216.99 Aligned_cols=164 Identities=24% Similarity=0.415 Sum_probs=134.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+.+||+|+|++|||||||++||+++.|...+.+|+. ....+....++..+.
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 56 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT--------------------------- 56 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEE---------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceee---------------------------
Confidence 4578999999999999999999999999999999887 445566666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|+.++...+..++..
T Consensus 57 ----------------------------------------------------------~~i~d~~g~~~~~~~~~~~~~~ 78 (174)
T d1wmsa_ 57 ----------------------------------------------------------MQIWDTAGQERFRSLRTPFYRG 78 (174)
T ss_dssp ----------------------------------------------------------EEEEECCCCGGGHHHHGGGGTT
T ss_pred ----------------------------------------------------------EeeecccCcceehhhhhhhhhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+++++++||++++.||+.+..|++++.+.... ...+|+++||||+|+.+
T Consensus 79 ~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~----------------------------- 129 (174)
T d1wmsa_ 79 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE----------------------------- 129 (174)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-----------------------------
T ss_pred cceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-----------------------------
Confidence 99999999999999999999999998876532 24577888888888743
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-C
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-D 323 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-~ 323 (373)
+.++.++++.+++.. .
T Consensus 130 ---------------------------------------------------------------~~v~~~~~~~~~~~~~~ 146 (174)
T d1wmsa_ 130 ---------------------------------------------------------------RQVSTEEAQAWCRDNGD 146 (174)
T ss_dssp ---------------------------------------------------------------CSSCHHHHHHHHHHTTC
T ss_pred ---------------------------------------------------------------ccCcHHHHHHHHHHcCC
Confidence 223445666777665 5
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||||++|.||+++|+.|++.+
T Consensus 147 ~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 147 YPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 8999999999999999999999864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.2e-30 Score=221.45 Aligned_cols=162 Identities=27% Similarity=0.445 Sum_probs=111.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|+..+.++++ +...+.+.+++..+.
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 56 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK---------------------------- 56 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEE----------------------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEE----------------------------
Confidence 358999999999999999999999999999999988 677788888887777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++.|..++..+++++
T Consensus 57 ---------------------------------------------------------l~i~D~~G~e~~~~~~~~~~~~~ 79 (173)
T d2fu5c1 57 ---------------------------------------------------------LQIWDTAGQERFRTITTAYYRGA 79 (173)
T ss_dssp ---------------------------------------------------------EEEEEC---------CCTTTTTC
T ss_pred ---------------------------------------------------------EEEEECCCchhhHHHHHHhccCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.||+.+..|+..+.... ...+|+++||||.|+...
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~~k~D~~~~------------------------------- 126 (173)
T d2fu5c1 80 MGIMLVYDITNEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDK------------------------------- 126 (173)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSC-------------------------------
T ss_pred CEEEEEEECCChhhHHHHHHHHHHhhhhc--cCCceEEEEEecccchhh-------------------------------
Confidence 99999999999999999999998887654 367888888998887641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..++...+++|+
T Consensus 127 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 146 (173)
T d2fu5c1 127 ------------------------------------------------------------RQVSKERGEKLALDYGIKFM 146 (173)
T ss_dssp ------------------------------------------------------------CCSCHHHHHHHHHHHTCEEE
T ss_pred ------------------------------------------------------------cccHHHHHHHHHHhcCCEEE
Confidence 11223455667778899999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.|++.+
T Consensus 147 e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 147 ETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp ECCC---CCHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-29 Score=215.48 Aligned_cols=160 Identities=28% Similarity=0.523 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+||+++|++|||||||+++|+++.|...+.+|++ ++..+.+.+++..+.
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~----------------------------- 52 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK----------------------------- 52 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 48999999999999999999999999999999998 667788888887777
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|++.|..++..++++++
T Consensus 53 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~ 76 (166)
T d1g16a_ 53 --------------------------------------------------------LQIWDTAGQERFRTITTAYYRGAM 76 (166)
T ss_dssp --------------------------------------------------------EEEECCTTGGGTSCCCHHHHTTEE
T ss_pred --------------------------------------------------------EEEEECCCchhhHHHHHHHHhcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||.+++.+|+.+..|+..+..... ...|++++++|.|+...
T Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~-------------------------------- 122 (166)
T d1g16a_ 77 GIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR-------------------------------- 122 (166)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTC--------------------------------
T ss_pred EEEEEEECCCccCHHHHHhhhhhhhcccc--Ccceeeeecchhhhhhh--------------------------------
Confidence 99999999999999999999888777643 56778888888887641
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+..++++.++..++++|+|
T Consensus 123 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 142 (166)
T d1g16a_ 123 ------------------------------------------------------------VVTADQGEALAKELGIPFIE 142 (166)
T ss_dssp ------------------------------------------------------------CSCHHHHHHHHHHHTCCEEE
T ss_pred ------------------------------------------------------------hhhHHHHHHHHHhcCCeEEE
Confidence 11234567778888999999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.|++++
T Consensus 143 ~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 143 SSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999865
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.8e-29 Score=215.29 Aligned_cols=163 Identities=23% Similarity=0.361 Sum_probs=140.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+.+||+++|++|||||||++||+++.|...+.++.. +...+.+.+++..+.
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 57 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK--------------------------- 57 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEE---------------------------
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccE---------------------------
Confidence 3568999999999999999999999999998888877 456677777777777
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++++..++..++.+
T Consensus 58 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 79 (177)
T d1x3sa1 58 ----------------------------------------------------------LAIWDTAGQERFRTLTPSYYRG 79 (177)
T ss_dssp ----------------------------------------------------------EEEEEECSSGGGCCSHHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++++|||++++.+++.+..|+.++.+.. .....|+++++||.|...
T Consensus 80 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~i~~~~nk~d~~~------------------------------- 127 (177)
T d1x3sa1 80 AQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKEN------------------------------- 127 (177)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSS-------------------------------
T ss_pred CCEEEEEEECCCccccccchhhhhhhcccc-cccceeeEEEeecccccc-------------------------------
Confidence 999999999999999999999999887654 224677888888888653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.+++..+++|
T Consensus 128 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 146 (177)
T d1x3sa1 128 -------------------------------------------------------------REVDRNEGLKFARKHSMLF 146 (177)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------ccccHHHHHHHHHHCCCEE
Confidence 2234556778888899999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.||+++|+.+++.+
T Consensus 147 ~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 147 IEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999854
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=1.5e-28 Score=211.97 Aligned_cols=121 Identities=26% Similarity=0.532 Sum_probs=104.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+|+|++|||||||+++|+++.|...+.+|++ +.+.+.....+..+.
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT----------------------------- 52 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEE-----------------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEE-----------------------------
Confidence 37999999999999999999999999999999987 556666666666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+..+...+..++..++
T Consensus 53 --------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~~ 76 (184)
T d1vg8a_ 53 --------------------------------------------------------MQIWDTAGQERFQSLGVAFYRGAD 76 (184)
T ss_dssp --------------------------------------------------------EEEEEECSSGGGSCSCCGGGTTCS
T ss_pred --------------------------------------------------------EEeeecCCcccccccccccccCcc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||+++..+|+.+..|++++...... ...+|+++||||+|+.+
T Consensus 77 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~ 125 (184)
T d1vg8a_ 77 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 125 (184)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred EEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence 999999999999999999999988776422 24578888888888754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.94 E-value=3.9e-27 Score=199.21 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|.++.|...+.||++-.+ +.+.. ..+.
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~-~~~~~--~~~~------------------------------ 48 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITK--GNVT------------------------------ 48 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEE--TTEE------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee-eeeee--eeEE------------------------------
Confidence 58999999999999999999999999988888876211 11111 1122
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+...+..++.++++
T Consensus 49 -------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~~~ 73 (164)
T d1zd9a1 49 -------------------------------------------------------IKLWDIGGQPRFRSMWERYCRGVSA 73 (164)
T ss_dssp -------------------------------------------------------EEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred -------------------------------------------------------EEEeeccccccccccccccccccch
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+++..+|+.+..|+..+.+.. ..+.+|++|||||.|+.+
T Consensus 74 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~ 118 (164)
T d1zd9a1 74 IVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPG 118 (164)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred hhcccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccch
Confidence 999999999999999998887776543 236899999999999864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.94 E-value=2.5e-26 Score=196.14 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=62.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+...+..++..++++++|||+++..++..+..|+..+.... ....+|++++|||+|+.+
T Consensus 62 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~-~~~~~pillv~nK~Dl~~ 131 (176)
T d1fzqa_ 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLT 131 (176)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTT
T ss_pred EeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhh-ccCCCeEEEEEEeccccc
Confidence 8999999999999999999999999999999999999999988887765543 235789999999999975
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.93 E-value=4.8e-26 Score=194.10 Aligned_cols=70 Identities=14% Similarity=0.292 Sum_probs=61.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.++..+..++++++++++|||+++..++..+..|+....+.. .....|++++|||+|+.+
T Consensus 58 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~-~~~~~piiiv~NK~Dl~~ 127 (173)
T d1e0sa_ 58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPD 127 (173)
T ss_dssp EEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred eEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhc-ccccceeeeeeecccccc
Confidence 8999999999999999999999999999999999999999998877665432 236799999999999975
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.92 E-value=3.2e-25 Score=185.31 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=62.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|...+...+..++..+++++++||+.++.++..+..|+.++.... ....+|+++++||.|+.+
T Consensus 46 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~k~d~~~ 115 (160)
T d1r8sa_ 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN 115 (160)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhh-cccCceEEEEeecccccc
Confidence 9999999999999999999999999999999999999999998887776544 236789999999999875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.92 E-value=6.1e-26 Score=194.99 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=57.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|||++++.++..+..|+..+.... ...++|++++|||+|+.+
T Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~-~~~~~piliv~NK~Dl~~ 132 (182)
T d1moza_ 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPG 132 (182)
T ss_dssp EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTT
T ss_pred EEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhh-ccCCcceEEEEEeecccc
Confidence 8999999999999999999999999999999999999999988876654432 235789999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.92 E-value=4.8e-25 Score=186.13 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=60.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+...+..++..++++++|||+++..++.....|+....... ...++|+++||||+|+.+
T Consensus 48 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 117 (165)
T d1ksha_ 48 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPG 117 (165)
T ss_dssp EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred eeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhc-ccCCCceEEEEecccccc
Confidence 8999999999999999999999999999999999999999887665554332 236789999999999875
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=4.3e-23 Score=178.00 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=56.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHH-----------HHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ-----------SVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~-----------~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+++||++|++.|..++..++++++++++|||+++..+|. .+..|...+... ....+|++++|||.|+
T Consensus 44 ~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~--~~~~~~~~lv~Nk~d~ 121 (195)
T d1svsa1 44 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK--WFTDTSIILFLNKKDL 121 (195)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG--GGTTSEEEEEEECHHH
T ss_pred eeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccc--ccCCCCEEEEeccchh
Confidence 999999999999999999999999999999999987763 233344444332 2367899999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 122 ~~ 123 (195)
T d1svsa1 122 FE 123 (195)
T ss_dssp HH
T ss_pred hh
Confidence 75
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.87 E-value=6.2e-22 Score=168.29 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=55.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||+++++.+......++..++++++++|.++..++.....+........ .....|+++||||+|+..
T Consensus 61 ~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 130 (177)
T d1zj6a1 61 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 130 (177)
T ss_dssp EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred EEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcc-cccceEEEEEEEcccccc
Confidence 8899999999999999999999999999999999999988776655444332 336789999999999865
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.87 E-value=1.2e-21 Score=164.56 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=57.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|+.+|.+.+......++...+++++++|+.+..++.....+........ .....|+++++||.|+.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~ 120 (169)
T d1upta_ 51 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQ 120 (169)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeeccccc
Confidence 8899999999998888899999999999999999988888877554444332 236788999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.2e-21 Score=163.42 Aligned_cols=70 Identities=16% Similarity=0.341 Sum_probs=61.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+||+.|...+......++..+++++++||.++..++.....|........ ...+.|++++++|.|+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~~~k~d~~~ 115 (166)
T d2qtvb1 46 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN 115 (166)
T ss_dssp EEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCT-TTTTCCEEEEEECTTSSS
T ss_pred EEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhh-ccCCceEEEEeccccccc
Confidence 8899999999999999999999999999999999999999888777665544 346789999999999874
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=1.5e-21 Score=168.92 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=91.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||++||..+.|. +.||++ ++.+ +....+.
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~----~~~~~~~----------------------------- 46 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVI----------------------------- 46 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE----EECSSCE-----------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE----Eecccee-----------------------------
Confidence 589999999999999999999988874 678887 3221 1111122
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|++.+...+..++.+++
T Consensus 47 --------------------------------------------------------~~~~d~~g~~~~~~~~~~~~~~~~ 70 (200)
T d2bcjq2 47 --------------------------------------------------------FRMVDVGGQRSERRKWIHCFENVT 70 (200)
T ss_dssp --------------------------------------------------------EEEEECCCSTTGGGGGGGGCSSCS
T ss_pred --------------------------------------------------------eeeccccccccccccccccccccc
Confidence 899999999999999999999999
Q ss_pred eEEEEEeCCChh-----------hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLE-----------SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~-----------s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++||.++.. .++.+..|...+.... ..++|++++|||.|+..
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~~~v~NK~Dl~~ 126 (200)
T d2bcjq2 71 SIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW--FQNSSVILFLNKKDLLE 126 (200)
T ss_dssp EEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG--GSSSEEEEEEECHHHHH
T ss_pred eeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh--ccCccEEEecchhhhhh
Confidence 999999988753 5677778888776543 36899999999999975
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.82 E-value=1.3e-20 Score=160.62 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=54.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
...||+.++..+......++...+++++++|+.+...+.....+........ ...+.|+++++||.|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~K~D~~~ 128 (186)
T d1f6ba_ 59 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE 128 (186)
T ss_dssp EEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred cccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhccc-ccCCCceEEEEeccCccc
Confidence 7789999999888888899999999999999999999988776554444332 336899999999999875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.5e-20 Score=157.21 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=51.9
Q ss_pred eeeeccccccchh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|..... .....++..+|.+++++|..+..+++....|.+.+.... ...|+++|+||+|+..
T Consensus 51 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 51 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP---AKLPITVVRNKADITG 126 (161)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC---TTCCEEEEEECHHHHC
T ss_pred eeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc---cccceeeccchhhhhh
Confidence 7788888854332 223455788999999999999888888877776666543 4789999999999875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=2.3e-20 Score=161.64 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=48.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhh----------HHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES----------FQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s----------~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++||++|++.+...+..+++++++++++|+.++..+ ++....|+..+.+.. ...++|++++|||.|+.
T Consensus 46 ~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 46 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIILFLNKTDLL 124 (200)
T ss_dssp EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHHHH
T ss_pred eeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhCh-hhcCceEEEEeccchhh
Confidence 8999999999999999999999999999999987543 344444444443322 23689999999999997
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 125 ~ 125 (200)
T d1zcba2 125 E 125 (200)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.6e-19 Score=151.61 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=47.2
Q ss_pred eeeeccccccchh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..... .....++..+|++++|+|+.++.+... ..|.+.++... .+.|+++|+||+|+..
T Consensus 55 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~---~~~piilv~NK~Dl~~ 129 (178)
T d1wf3a1 55 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAK 129 (178)
T ss_dssp EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred eeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccc---cchhhhhhhccccccc
Confidence 8899999975432 223345678999999999988654432 34555555443 5689999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.2e-18 Score=148.61 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=43.2
Q ss_pred eeeeccccccch-------hHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF-------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~-------~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.... .......+..++.+++++|.... .++.+..|...+..........|+++|+||+|+.+
T Consensus 51 ~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 127 (180)
T d1udxa2 51 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 127 (180)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred EEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 889999994321 12233456778999999997653 23444444444433221123578888889998865
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=1.3e-17 Score=142.15 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=50.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++|++|+..|.......+..+|++++++|..+....+....| ..+.. ..+|+++|.||.|+.+
T Consensus 61 ~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~-----~~~p~iiv~NKiD~~~ 125 (179)
T d1wb1a4 61 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAG 125 (179)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSC
T ss_pred ccccccccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh-----cCCcceeccccccccC
Confidence 88999999999998888889999999999999876443332222 22222 4688999999999875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=5.6e-18 Score=141.19 Aligned_cols=63 Identities=21% Similarity=0.151 Sum_probs=43.1
Q ss_pred eeeeccccccc--------h-hHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ--------F-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~--------~-~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|... + .......+..+|++++|+|.+++...+...-+. .. ...+++++.||.|+.+
T Consensus 50 ~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~-----~~---~~~~~i~~~~k~d~~~ 121 (160)
T d1xzpa2 50 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE-----RI---KNKRYLVVINKVDVVE 121 (160)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHH-----HH---TTSSEEEEEEECSSCC
T ss_pred EEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhh-----hc---ccccceeeeeeccccc
Confidence 78899998321 1 122333467899999999999887665443222 11 4678899999999875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=3.5e-17 Score=142.41 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=53.7
Q ss_pred eeeeccccccchh-HhHHhhhhhcCeEEEEEeCCChhhH-HHHHHHHHH-HHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP-AMRRLSIATAHAFLLVYSTTCLESF-QSVKCYFEE-IREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~-~~~~~~~~~~~~~i~v~dv~~~~s~-~~l~~~~~~-i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+. .....++..++++++|+|+++..++ .....|+.. +.........+|++||+||+|+.+
T Consensus 49 ~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~ 122 (207)
T d2fh5b1 49 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122 (207)
T ss_dssp EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred eeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence 8999999999886 4667788999999999999987654 444444433 333332335789999999999975
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=4.8e-17 Score=137.24 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=42.1
Q ss_pred eeeeccccccc---------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ---------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~---------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|... +......++..+|.++++.+......... ..|...++.. .+|+++|+||+|+.+
T Consensus 50 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-----~~pviiv~NK~Dl~~ 123 (171)
T d1mkya1 50 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS-----TVDTILVANKAENLR 123 (171)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred cccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc-----cccccccchhhhhhh
Confidence 67788877321 12233344677899999888776544433 4455555543 578999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=1.2e-16 Score=136.33 Aligned_cols=64 Identities=17% Similarity=-0.032 Sum_probs=39.0
Q ss_pred eeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 146 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+|+..+..........++..+|++++|+|+.....-+ ...+...+.. ...|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~-----~~~~~i~v~nK~D~~~ 134 (186)
T d1mkya2 71 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER-----RGRASVVVFNKWDLVV 134 (186)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH-----TTCEEEEEEECGGGST
T ss_pred cccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH-----cCCceeeeccchhhhc
Confidence 34444444444455566678899999999997654322 2334444443 4689999999999874
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.70 E-value=2.3e-17 Score=145.40 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=53.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh-----------hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-----------SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-----------s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+++||++|++.++..+..++.+++++++++|.++.. ..+.+..|..-+... ....+|++|+|||+|+
T Consensus 49 ~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~--~~~~~~iil~~NK~Dl 126 (221)
T d1azta2 49 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR--WLRTISVILFLNKQDL 126 (221)
T ss_dssp EEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCG--GGSSCEEEEEEECHHH
T ss_pred EEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcCh--hhCCCcEEEEechhhh
Confidence 999999999999999999999999999999987643 223333333333222 2367999999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 127 ~~ 128 (221)
T d1azta2 127 LA 128 (221)
T ss_dssp HH
T ss_pred hh
Confidence 86
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=9.1e-16 Score=130.41 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.++++||++|.||+++++.|.+..
T Consensus 158 ~~~~vSA~~g~gi~~L~~~i~~~l 181 (184)
T d2cxxa1 158 VFIPISAKFGDNIERLKNRIFEVI 181 (184)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999854
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=1.5e-16 Score=135.76 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=23.8
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++|.+||++|.||++|++.+.+..
T Consensus 146 ~~~v~~iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 146 DYPVFPISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 57889999999999999999999865
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.60 E-value=1.9e-15 Score=133.50 Aligned_cols=66 Identities=26% Similarity=0.209 Sum_probs=50.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.++||||++.|...+...+..+|++++|+|+.+.-.-... ..+..+.. ..+|+++|.||.|+.+.
T Consensus 72 ~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM-----YRTPFVVAANKIDRIHG 137 (227)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSTT
T ss_pred cccccccceecccccchhcccccceEEEEEecccCcccchh-HHHHHhhc-----CCCeEEEEEECccCCCc
Confidence 88999999999988877788899999999998775333332 22333333 46899999999999874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.60 E-value=1.4e-14 Score=124.64 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=49.3
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+.++|++|+..|.......+..+|++++|.|...........+-+..+... ...+++++-||.|+.+
T Consensus 78 ~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~----~~~~iiv~inK~D~~d 146 (195)
T d1kk1a3 78 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----GQKNIIIAQNKIELVD 146 (195)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSC
T ss_pred eeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh----cCccceeeeecccchh
Confidence 34889999999999988888889999999999988753222222222223332 2345788899999875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=1.1e-14 Score=125.15 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.9
Q ss_pred cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+++.+||++|.|++++|+.|.+++
T Consensus 167 ~~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.52 E-value=1.8e-13 Score=118.63 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=47.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|++|+.+|.......+..+|++++|.|....-.-..-++-+..+... .-.|++++.||.|+.+
T Consensus 88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~----~i~~iIV~vNK~Dl~~ 154 (205)
T d2qn6a3 88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII----GVKNLIIVQNKVDVVS 154 (205)
T ss_dssp EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----TCCCEEEEEECGGGSC
T ss_pred EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc----CCceeeeccccCCCcc
Confidence 889999999999888888888999999999987642111111212222222 2357888899999975
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.3e-13 Score=114.70 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
..+++++||++|+|+++|++.|++.
T Consensus 145 ~~~~~~vSA~~g~gi~~L~~~i~~~ 169 (179)
T d1egaa1 145 FLDIVPISAETGLNVDTIAAIVRKH 169 (179)
T ss_dssp CSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred CCCEEEEeCcCCCCHHHHHHHHHHh
Confidence 3689999999999999999999874
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=1.8e-13 Score=118.20 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=49.6
Q ss_pred eeeeccccccchhHhHHhhhh----hcCeEEEEEeCC-ChhhHHHHHHHHHHHHHHh--ccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIA----TAHAFLLVYSTT-CLESFQSVKCYFEEIREQR--QDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~----~~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~--~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+......++. .++.+++++|.. +..+++.+..|+..+.... .....+|+++|+||+|+.+
T Consensus 48 ~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~ 125 (209)
T d1nrjb_ 48 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125 (209)
T ss_dssp CEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence 889999999987765554443 347777777755 5667777766664443221 1236799999999999975
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=9.5e-13 Score=111.14 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
.+...+||+++|.+|||||||+|++++..+
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 355689999999999999999999986543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.41 E-value=9.9e-13 Score=112.89 Aligned_cols=66 Identities=18% Similarity=0.025 Sum_probs=48.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.||+|+..|.......+..+|++++|.|..+.-.-+.. +.+..+... ...|++++-||.|+..
T Consensus 68 ~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~----~~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI----GVEHVVVYVNKADAVQ 133 (196)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT----TCCCEEEEEECGGGCS
T ss_pred EEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh----cCCcEEEEEecccccc
Confidence 89999999999988888888899999999999875332222 222222322 3457888899999874
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=2.6e-12 Score=110.97 Aligned_cols=65 Identities=25% Similarity=0.184 Sum_probs=50.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.++||||+.+|.......++.+|++++|.|+.+.-..+..+.|. .+.. ..+| ++++-||.|+.+
T Consensus 69 i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~-----~gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 69 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ-----VGVPYIVVFMNKVDMVD 134 (204)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH-----TTCCCEEEEEECGGGCC
T ss_pred EEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCeEEEEEEecccCC
Confidence 899999999999988888899999999999998866555544443 2222 3555 677789999864
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.26 E-value=5.5e-11 Score=103.75 Aligned_cols=65 Identities=25% Similarity=0.209 Sum_probs=47.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+.|+||++.|..........+|++++|.|+...-.-+..+.|. +... ..++ ++++-||.|+.+
T Consensus 91 ~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~--~~~~----~gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 91 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY--IASL----LGIKHIVVAINKMDLNG 156 (222)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH--HHHH----TTCCEEEEEEECTTTTT
T ss_pred EEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH--HHHH----cCCCEEEEEEEcccccc
Confidence 899999999999988888889999999999987753333222221 2222 2444 778889999875
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.22 E-value=1.1e-10 Score=104.48 Aligned_cols=64 Identities=22% Similarity=0.170 Sum_probs=53.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
++++||||+.+|.......++-+|++++|.|..+.-.-.....|.. +.+ ..+|.+++-||.|..
T Consensus 69 ~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~-----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 69 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTV-AER-----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH-----TTCCEEEEEECGGGC
T ss_pred eeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHh-hhh-----ccccccccccccccc
Confidence 9999999999999999999999999999999987766555555532 332 478999999999974
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=7.4e-11 Score=105.81 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=54.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++||||+.+|.......++-+|++++|.|..+.-.-....-|.. ..+ ..+|.+++-||.|...
T Consensus 73 ~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~-----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 73 INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK-----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp EEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHT-----TTCCEEEEEECTTSTT
T ss_pred EEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHH-----cCCCEEEEEecccccc
Confidence 9999999999999988888999999999999988766665555533 332 5799999999999876
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.05 E-value=3e-10 Score=99.18 Aligned_cols=71 Identities=25% Similarity=0.172 Sum_probs=47.8
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHH---HHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS---VKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~---l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++.||||+..|.......++-+|++++|.|+.+.-.-.. .....+.+.... .....+++++-||.|+..
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~~~~iIv~iNK~D~~~ 155 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGLDQLIVAVNKMDLTE 155 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTCTTCEEEEECGGGSS
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhCCCceEEEEEcccCCC
Confidence 39999999999999999999999999999999987421110 001111111111 013446788899999874
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=4.8e-10 Score=106.29 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=39.2
Q ss_pred eeeeccccccchh-----HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP-----AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~-----~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..... .+....+..+|.++++.|...... . ..+...+.+ ...|+++|.||+|...
T Consensus 109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~--d-~~l~~~l~~-----~~k~~~~V~nK~D~~~ 176 (400)
T d1tq4a_ 109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKN--D-IDIAKAISM-----MKKEFYFVRTKVDSDI 176 (400)
T ss_dssp EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHH--H-HHHHHHHHH-----TTCEEEEEECCHHHHH
T ss_pred EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHH--H-HHHHHHHHH-----cCCCEEEEEeCccccc
Confidence 7899999964332 123334556788877776433222 2 233344444 3689999999999753
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.05 E-value=1.6e-10 Score=102.33 Aligned_cols=62 Identities=26% Similarity=0.171 Sum_probs=35.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCc-cEEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEI-PIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~-pi~ivgnK~Dl 213 (373)
+.+.|+||+..|..........+|++++|.|+... .+.+.+ ..+.. ..+ +++++-||.|+
T Consensus 104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l----~l~~~-----~~i~~iiv~iNKmD~ 174 (245)
T d1r5ba3 104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA----VLART-----QGINHLVVVINKMDE 174 (245)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH----HHHHH-----TTCSSEEEEEECTTS
T ss_pred eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH----HHHHH-----cCCCeEEEEEEcCCC
Confidence 89999999999998888888999999999999763 122222 11121 234 47788899998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 175 ~~ 176 (245)
T d1r5ba3 175 PS 176 (245)
T ss_dssp TT
T ss_pred Cc
Confidence 74
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=1.1e-09 Score=96.41 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=47.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhh-------HHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-------FQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s-------~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
++.+.|+||+.+|..-.......+|++++|.|.....- .+..+.|. .+.. -.+| ++++-||.|+.+
T Consensus 85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~-----~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT-----LGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH-----TTCCEEEEEEECGGGGT
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH-----cCCCeEEEEEECCCCCC
Confidence 39999999999999888888999999999999875311 01222221 1122 2455 778899999875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.96 E-value=9.4e-10 Score=98.02 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=41.6
Q ss_pred eeeeccccccchh-------HhHH--hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP-------AMRR--LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~-------~~~~--~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|..... .... ......+++++|.++....--+.....+..+....+..---++++|.||.|...
T Consensus 82 i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 82 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred EEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 8899999953221 1111 112356888888887654222222334445555544333457899999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.94 E-value=3.5e-09 Score=92.60 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=40.6
Q ss_pred eeeeccccccchhHhHHhh---h--hhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLS---I--ATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~---~--~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|++|+..+....... . ...+.++++.|... +..+.........+..+ -..|.+++.||.|+..
T Consensus 97 ~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~----~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 97 YVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR----LGATTIPALNKVDLLS 171 (244)
T ss_dssp EEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH----HTSCEEEEECCGGGCC
T ss_pred eeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH----hCCCceeeeecccccc
Confidence 7788999997764432222 1 23457888888643 33333332222222222 3688999999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=2.6e-09 Score=98.19 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=55.0
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhh---HHHHHh-
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY---FEEIRE- 319 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~---~~~~~a- 319 (373)
...+|.+++|.+.......+..+.-.-++ . =++|.||+|.......... ....+.
T Consensus 165 ~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---a------------------Di~VvNKaD~~~~~~~~~~~~~~~~al~~ 223 (327)
T d2p67a1 165 ARMVDCFISLQIAGGGDDLQGIKKGLMEV---A------------------DLIVINKDDGDNHTNVAIARHMYESALHI 223 (327)
T ss_dssp HTTCSEEEEEECC------CCCCHHHHHH---C------------------SEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccceEEEEecCCCchhhhhhchhhhcc---c------------------cEEEEEeecccchHHHHHHHHHHHHHhhh
Confidence 44567888877766666555544422222 1 1488899998765433221 111111
Q ss_pred -----hhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccCC
Q psy16673 320 -----QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355 (373)
Q Consensus 320 -----~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~~ 355 (373)
..|..|++.|||++|.||+++++.|.+.....+.++
T Consensus 224 ~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG 264 (327)
T d2p67a1 224 LRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG 264 (327)
T ss_dssp SCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHhCC
Confidence 244568999999999999999999998766655543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.92 E-value=4.9e-09 Score=96.15 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=56.2
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh----
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE---- 319 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a---- 319 (373)
...+|.++++......+..+-.+. -+.+. +=++|.||+|+.+...........+.
T Consensus 162 ~~~~D~~v~v~~p~~GD~iQ~~k~---gilE~------------------aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~ 220 (323)
T d2qm8a1 162 ADLTDFFLVLMLPGAGDELQGIKK---GIFEL------------------ADMIAVNKADDGDGERRASAAASEYRAALH 220 (323)
T ss_dssp HTTSSEEEEEECSCC------CCT---THHHH------------------CSEEEEECCSTTCCHHHHHHHHHHHHHHHT
T ss_pred hcccceEEEEeeccchhhhhhhhh---hHhhh------------------hheeeEeccccccchHHHHHHHHHHHHHhh
Confidence 345788888888887765543332 11111 12599999997655443333322222
Q ss_pred ------hhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccCC
Q psy16673 320 ------QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355 (373)
Q Consensus 320 ------~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~~ 355 (373)
..+..|++.|||++|.|++++++.|.+.......++
T Consensus 221 ~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G 262 (323)
T d2qm8a1 221 ILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATG 262 (323)
T ss_dssp TBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCC
Confidence 125578999999999999999999988765555443
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=6e-10 Score=92.56 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=54.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|++.|..+++.++++++++++|||++++.||+++..|+.++........+|++ +||||+|
T Consensus 49 ~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~pii------------lvgnK~D 116 (168)
T d2gjsa1 49 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII------------LVGNKSD 116 (168)
T ss_dssp EEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEE------------EEEECTT
T ss_pred ceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEE------------Eeecccc
Confidence 4678999999999999999999999999999999999999999999999888776677766 9999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=1.6e-09 Score=99.97 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=56.3
Q ss_pred ceeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 142 LRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 142 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+++.||||+.+|.......++-+|++++|+|+...-..+...-|..... ..+|++++-||.|...
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~------~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHHHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH------cCCCeEEEEECccccc
Confidence 3559999999999999999999999999999999998766666555544333 4789999999999864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.9e-09 Score=90.07 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=62.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|++.|..+++.++++++++++|||++++.||+++..|+..+..... .++|++ |||||+|
T Consensus 51 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~pii------------lvgnK~D 117 (177)
T d1kmqa_ 51 ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPII------------LVGNKKD 117 (177)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEE------------EEEECGG
T ss_pred eeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC-CCCceE------------Eeeeccc
Confidence 478999999999999999999999999999999999999999885544433332 246655 9999999
Q ss_pred cccchhhhhh
Q psy16673 304 LESFQSVKCY 313 (373)
Q Consensus 304 l~~~r~v~~~ 313 (373)
+...+.+...
T Consensus 118 l~~~~~~~~~ 127 (177)
T d1kmqa_ 118 LRNDEHTRRE 127 (177)
T ss_dssp GTTCHHHHHH
T ss_pred ccchhhHHHH
Confidence 9877765543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=2e-09 Score=89.48 Aligned_cols=70 Identities=34% Similarity=0.501 Sum_probs=63.6
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+++||++|++.+..+++.++++++++++|||++++.||+++..|+.++.+......+|++ +||||
T Consensus 51 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~i------------lvgnK 118 (169)
T d1x1ra1 51 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI------------LVANK 118 (169)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE------------EEEEC
T ss_pred cccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEE------------EEecc
Confidence 344679999999999999999999999999999999999999999999999888776677766 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 119 ~D 120 (169)
T d1x1ra1 119 VD 120 (169)
T ss_dssp TT
T ss_pred cc
Confidence 99
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4.8e-09 Score=86.69 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=62.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.++++|++|.+.|..++..++++++++++|||++++.||+.+..|+.++.+.....++|++ +||||+|
T Consensus 53 ~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lvgnK~D 120 (167)
T d1xtqa1 53 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM------------LVGNKKD 120 (167)
T ss_dssp EEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEE------------EEEECTT
T ss_pred Eeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccccccee------------eeccccc
Confidence 3578999999999999999999999999999999999999999999999888777777876 9999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=6.7e-09 Score=87.89 Aligned_cols=74 Identities=27% Similarity=0.394 Sum_probs=61.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHH-HHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~-~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+||++|+++|..+++.++++++++++|||++++.||+++..|+ +.+....+ ++|++ +||||+
T Consensus 52 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~i~------------lvgnK~ 117 (191)
T d2ngra_ 52 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP--KTPFL------------LVGTQI 117 (191)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEE------------EEEECG
T ss_pred eeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCC--CCceE------------EEeccc
Confidence 4679999999999999999999999999999999999999998854 44444333 35554 999999
Q ss_pred ccccchhhh
Q psy16673 303 CLESFQSVK 311 (373)
Q Consensus 303 Dl~~~r~v~ 311 (373)
|+...+.+.
T Consensus 118 Dl~~~~~~~ 126 (191)
T d2ngra_ 118 DLRDDPSTI 126 (191)
T ss_dssp GGGGCHHHH
T ss_pred cccccchhh
Confidence 998776654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=6.8e-09 Score=85.80 Aligned_cols=69 Identities=33% Similarity=0.452 Sum_probs=62.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
....+||++|+..+..+++.++++++++++|||++++.||+++..|+..+.+......+|++ +||||+
T Consensus 51 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~i------------lvgnK~ 118 (167)
T d1c1ya_ 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI------------LVGNKC 118 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE------------EEEECT
T ss_pred EEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEE------------EEEEec
Confidence 34679999999999999999999999999999999999999999999998887665566765 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 119 D 119 (167)
T d1c1ya_ 119 D 119 (167)
T ss_dssp T
T ss_pred C
Confidence 9
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.2e-09 Score=87.50 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=97.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+..+..+++.++++++++++|||++++.||+++..|+.++.+..+ ++|++ +||||+
T Consensus 52 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~pii------------lvgnK~ 117 (170)
T d1i2ma_ 52 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIV------------LCGNKV 117 (170)
T ss_dssp EEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC--SCCEE------------EEEECC
T ss_pred ccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccC--CCcee------------eecchh
Confidence 3467999999999999999999999999999999999999999999998887654 46655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+...+... ++..++...+++|+||||++|.||+++|+.|++..
T Consensus 118 Dl~~~~~~~--~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 118 DIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp CCSCSCCTT--TSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred hhhhhhhhh--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 998776543 45678889999999999999999999999999843
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=9.5e-09 Score=86.49 Aligned_cols=74 Identities=26% Similarity=0.373 Sum_probs=60.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHH-HHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~-~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+||++|++.|..++..++++++++++|||++++.||+++..|+ ..+....+ ++|++ +||||+
T Consensus 58 ~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~--~~~~i------------lvgnK~ 123 (185)
T d2atxa1 58 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP--NVPFL------------LIGTQI 123 (185)
T ss_dssp EEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECT
T ss_pred EeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCC--CCCee------------Eeeecc
Confidence 4679999999999999999999999999999999999999987754 44444432 45544 999999
Q ss_pred ccccchhhh
Q psy16673 303 CLESFQSVK 311 (373)
Q Consensus 303 Dl~~~r~v~ 311 (373)
|+.......
T Consensus 124 Dl~~~~~~~ 132 (185)
T d2atxa1 124 DLRDDPKTL 132 (185)
T ss_dssp TSTTCHHHH
T ss_pred ccccchhhh
Confidence 997765543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1e-08 Score=85.35 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=62.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+..|..++..++++++++++|||++++.||+.+..|+..+.+.....++|++ |||||+|
T Consensus 55 ~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i------------lvgnK~D 122 (173)
T d2fn4a1 55 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV------------LVGNKAD 122 (173)
T ss_dssp EEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE------------EEEECGG
T ss_pred eeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceE------------EEEEeec
Confidence 4678999999999999999999999999999999999999999999999887766667765 9999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=1.3e-08 Score=85.33 Aligned_cols=73 Identities=26% Similarity=0.321 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHH-HHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE-EIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~-~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+||++|++.+..+++.++++++++++|||++++.||+++..|+. .+....+ ++|+ ++||||+
T Consensus 51 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~i------------ilVgnK~ 116 (179)
T d1m7ba_ 51 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKM------------LLVGCKS 116 (179)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCEE------------EEEEECG
T ss_pred eeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCC--cceE------------EEEEecc
Confidence 46799999999999999999999999999999999999999988554 4444433 4554 4999999
Q ss_pred ccccchhh
Q psy16673 303 CLESFQSV 310 (373)
Q Consensus 303 Dl~~~r~v 310 (373)
|+......
T Consensus 117 Dl~~~~~~ 124 (179)
T d1m7ba_ 117 DLRTDVST 124 (179)
T ss_dssp GGGGCHHH
T ss_pred cccccchh
Confidence 98665543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=98.64 E-value=1.2e-08 Score=84.47 Aligned_cols=68 Identities=32% Similarity=0.490 Sum_probs=59.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+..+..++..++++++++++|||++++.||+.+..|++++.+.....++|++ +||||+|
T Consensus 53 ~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------ivgnK~D 120 (168)
T d1u8za_ 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 120 (168)
T ss_dssp EEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE------------EEEECGG
T ss_pred cccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEE------------EEecccc
Confidence 4678999999999999999999999999999999999999999999999988776677766 9999998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.1e-08 Score=85.81 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+||+.|++.|..++..++++++++++|||++++.||+++.. |...+..... ++|++ |||||
T Consensus 53 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~--~~pii------------lvgnK 118 (183)
T d1mh1a_ 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTK 118 (183)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TSCEE------------EEEEC
T ss_pred eEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCC--CCcEE------------EEeec
Confidence 346789999999999999999999999999999999999999987 5555554433 45655 99999
Q ss_pred cccccchhhhhh
Q psy16673 302 TCLESFQSVKCY 313 (373)
Q Consensus 302 ~Dl~~~r~v~~~ 313 (373)
+|+...+.+...
T Consensus 119 ~Dl~~~~~~~~~ 130 (183)
T d1mh1a_ 119 LDLRDDKDTIEK 130 (183)
T ss_dssp HHHHTCHHHHHH
T ss_pred ccchhhhhhhhh
Confidence 999888776544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.7e-08 Score=83.33 Aligned_cols=68 Identities=35% Similarity=0.496 Sum_probs=62.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|++.+..++..++++++++++|||++++.||.++..|...+.......++|++ |||||+|
T Consensus 52 ~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lvgnK~D 119 (167)
T d1kaoa_ 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI------------LVGNKVD 119 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE------------EEEECGG
T ss_pred eeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEE------------EEEEccc
Confidence 4678999999999999999999999999999999999999999999998887666667766 9999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.9e-08 Score=83.23 Aligned_cols=68 Identities=44% Similarity=0.616 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+||++|++.|..++..++++++++++|||++++.||+++..|+..+.+..+ ..++|++ |||||+
T Consensus 51 ~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii------------lVgnK~ 118 (171)
T d2erxa1 51 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM------------LVGNKC 118 (171)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE------------EEEECG
T ss_pred eeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEE------------EEeecc
Confidence 357899999999999999999999999999999999999999999998887654 3456655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 119 D 119 (171)
T d2erxa1 119 D 119 (171)
T ss_dssp G
T ss_pred c
Confidence 8
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.6e-08 Score=81.56 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=58.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.+|+++..|+..+.+.... .+| +++||||+|
T Consensus 55 ~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~------------~ilvgnK~D 121 (171)
T d2ew1a1 55 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN-KVI------------TVLVGNKID 121 (171)
T ss_dssp EEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECGG
T ss_pred EEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccc-ccc------------EEEEEeecc
Confidence 4678999999999999999999999999999999999999999999888765432 344 459999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=2.9e-08 Score=81.62 Aligned_cols=66 Identities=30% Similarity=0.429 Sum_probs=59.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..+..+.+.++++++++++|||++++.||+++..|++++.+..+. +|++ +||||+|
T Consensus 52 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~ii------------lVgnK~D 117 (164)
T d1z2aa1 52 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD--IPTA------------LVQNKID 117 (164)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--CCEE------------EEEECGG
T ss_pred eeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCC--ceEE------------EeeccCC
Confidence 4679999999999999999999999999999999999999999999999887653 5554 9999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.51 E-value=5.7e-08 Score=80.25 Aligned_cols=68 Identities=26% Similarity=0.347 Sum_probs=58.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..+++.++++++++++|||++++.++..+..|+..+...... ..| +++||||+
T Consensus 54 ~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iivv~nK~ 120 (169)
T d3raba_ 54 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD-NAQ------------VLLVGNKC 120 (169)
T ss_dssp EEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS-CCE------------EEEEEECT
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC-cce------------EEEEEeec
Confidence 35789999999999999999999999999999999999999999988776654432 344 44999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 121 D 121 (169)
T d3raba_ 121 D 121 (169)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=5.3e-08 Score=80.20 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=49.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+||+.|+..+..+++.++++++++++|||++++.||+++..|++.+...... ..| +++||||
T Consensus 52 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~-~~~------------~ilvgnK 117 (167)
T d1z08a1 52 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EIC------------LCIVGNK 117 (167)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG-GSE------------EEEEEEC
T ss_pred ceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccccc-ccc------------eeeeccc
Confidence 34679999999999999999999999999999999999999999999877665442 233 4588888
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=4.8e-08 Score=81.00 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=50.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.++||+|++.+..++..+++.++++++|||++++.||+.+..|++++..... ...+|++ +|||
T Consensus 53 ~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~pii------------lv~n 120 (175)
T d1ky3a_ 53 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV------------ILGN 120 (175)
T ss_dssp EEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE------------EEEE
T ss_pred cceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEE------------EEec
Confidence 467999999999999999999999999999999999999999999998877543 2355655 9999
Q ss_pred cccc
Q psy16673 301 TTCL 304 (373)
Q Consensus 301 K~Dl 304 (373)
|+|+
T Consensus 121 K~Dl 124 (175)
T d1ky3a_ 121 KIDA 124 (175)
T ss_dssp CTTS
T ss_pred ccch
Confidence 9994
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=6.2e-08 Score=79.72 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=59.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|++.|..++..++++++++++|||++++.||+.+..|...+.+.... ..| ++++|||+|
T Consensus 54 ~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iilvgnK~D 120 (166)
T d1z0fa1 54 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-NTV------------IILIGNKAD 120 (166)
T ss_dssp EEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccc-cce------------EEEEccccc
Confidence 4779999999999999999999999999999999999999999999888765443 334 559999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.5e-08 Score=84.22 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=54.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+++++|+|+++| ++..++++++++++|||++++.||+++..|..++.......++|++ +||||+|
T Consensus 58 ~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~pii------------lvgnK~D 122 (172)
T d2g3ya1 58 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII------------LVGNKSD 122 (172)
T ss_dssp ECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE------------EEEECTT
T ss_pred eccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEE------------EEecccc
Confidence 344556777766 6777899999999999999999999999999999887766677766 9999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=7.5e-08 Score=78.92 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=59.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
-.+.+||+.|++.+..+++.++..++++++|||++++.||+++..|+.++...... .+| +++||||+
T Consensus 49 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~-~~~------------iilvgnK~ 115 (164)
T d1yzqa1 49 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS-DVI------------IMLVGNKT 115 (164)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SSE------------EEEEEECT
T ss_pred eeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCC-Cce------------EEEEeccc
Confidence 34679999999999999999999999999999999999999999999888776543 345 45999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (164)
T d1yzqa1 116 D 116 (164)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=7.6e-08 Score=79.22 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=58.6
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
..+||++|++.+..++..++++++++++|||++++.+|+++..|...+...... ..| +++||||+|
T Consensus 55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iilvgnK~D 120 (167)
T d1z0ja1 55 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP-SIV------------VAIAGNKCD 120 (167)
T ss_dssp EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TSE------------EEEEEECTT
T ss_pred eeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCC-cce------------EEEecccch
Confidence 568999999999999999999999999999999999999999999888776553 344 459999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=7.5e-08 Score=79.45 Aligned_cols=67 Identities=25% Similarity=0.267 Sum_probs=57.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|+..+. .+..++++++++++|||++++.||+.+..|+..........++|++ +||||+|
T Consensus 51 ~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lvgnK~D 117 (168)
T d2atva1 51 SMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI------------LVGNKAD 117 (168)
T ss_dssp EEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE------------EEEECGG
T ss_pred EEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCccee------------eeccchh
Confidence 46799999999884 5677899999999999999999999999988777666555566655 9999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=6.7e-08 Score=79.90 Aligned_cols=68 Identities=34% Similarity=0.505 Sum_probs=57.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|...+..+++.++++++++++|||++++.||+.+..|..++.+.......|++ +||||+|
T Consensus 54 ~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lvgnK~D 121 (171)
T d2erya1 54 RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI------------LIGNKAD 121 (171)
T ss_dssp EEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEE------------EEEECTT
T ss_pred ccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEE------------EEEeccc
Confidence 4679999999999999999999999999999999999999999999988887766566655 9999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.4e-08 Score=85.24 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=54.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCch
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v 284 (373)
..+.++||+|++.|..+++.++++++++++|||++++.+|+.+..|..++........+|++
T Consensus 64 ~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii 125 (186)
T d2f7sa1 64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125 (186)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE
T ss_pred EEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEE
Confidence 34779999999999999999999999999999999999999999999887776655556655
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=98.44 E-value=1.9e-07 Score=76.49 Aligned_cols=112 Identities=12% Similarity=0.134 Sum_probs=89.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|++|++.+......++..++++++|||+++..++.+...++..........++|++ +|+||+|+
T Consensus 48 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK~Dl 115 (165)
T d1ksha_ 48 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL------------IFANKQDL 115 (165)
T ss_dssp EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred eeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceE------------EEEecccc
Confidence 458999999999999999999999999999999999999988876666555444455554 99999999
Q ss_pred ccchhhhhhHHHHH---hhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVKCYFEEIR---EQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~~~~~~~~---a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.+.+........ ....+++|+||||++|.||+++|+.|++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 116 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 77665554433322 233357899999999999999999999854
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=98.43 E-value=1.4e-07 Score=78.11 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=91.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|+.|++.+..+++.++..++++++|||++++.+|+++..|...+.......++|++ +||||+|+
T Consensus 62 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pil------------lv~nK~Dl 129 (176)
T d1fzqa_ 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL------------IFANKQDL 129 (176)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE------------EEEECTTS
T ss_pred EeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEE------------EEEEeccc
Confidence 458999999999999999999999999999999999999999988887776666667766 99999999
Q ss_pred ccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
..... +....+...+...+++|+||||++|+||+|+|++|++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence 65432 23333334455667899999999999999999999873
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.3e-07 Score=78.25 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=60.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||.+++.+|.++..|...+...... ++|++ +||||+
T Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~pii------------vv~nK~ 120 (174)
T d2bmea1 54 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ-NIVII------------LCGNKK 120 (174)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEEE------------EEEECG
T ss_pred eeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC-ceEEE------------EEEecc
Confidence 35779999999999999999999999999999999999999999999988876553 45544 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 121 D 121 (174)
T d2bmea1 121 D 121 (174)
T ss_dssp G
T ss_pred c
Confidence 9
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.3e-07 Score=79.89 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=58.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..+++.++++++++++|||++++.+|..+..|+..+.+... ..+|+ ++||||+|
T Consensus 56 ~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~-~~~~i------------ilv~nK~D 122 (194)
T d2bcgy1 56 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLK------------LLVGNKCD 122 (194)
T ss_dssp EEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEE------------EEEEECTT
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc-CCceE------------EEEEeccc
Confidence 467899999999999999999999999999999999999999999888876543 34454 49999988
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=7.8e-08 Score=79.84 Aligned_cols=69 Identities=23% Similarity=0.363 Sum_probs=61.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|+.|++.|..++...++.++++++|||++++.||+.+..|+..+.+.... ++|++ +||||+|
T Consensus 54 ~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~-~~pii------------lvgnK~D 120 (175)
T d2f9la1 54 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIM------------LVGNKSD 120 (175)
T ss_dssp EEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEEE------------EEEECTT
T ss_pred EEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCC-CCcEE------------EEEeeec
Confidence 4679999999999999999999999999999999999999999999998887653 46655 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 121 l~ 122 (175)
T d2f9la1 121 LR 122 (175)
T ss_dssp CG
T ss_pred cc
Confidence 73
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=98.41 E-value=1.4e-07 Score=78.68 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=90.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||++|++.+..+++.++.+++++++|||++++.++.+...|+..+.......+.|++ +||||+|+
T Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~pil------------iv~NK~Dl 130 (182)
T d1moza_ 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL------------VFANKQDQ 130 (182)
T ss_dssp EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE------------EEEECTTS
T ss_pred EEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceE------------EEEEeecc
Confidence 468999999999999999999999999999999999999998887766655554455655 99999998
Q ss_pred cc---chhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 305 ES---FQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 305 ~~---~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
.+ .+.+....+...+...+++|+||||++|+||+++|+.|++.++
T Consensus 131 ~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~ 178 (182)
T d1moza_ 131 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178 (182)
T ss_dssp TTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 54 4555555555556667889999999999999999999998754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=1.1e-07 Score=78.75 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=48.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..+++.++++++++++|||++++.||+.+..|...+...... ..| +++||||+
T Consensus 55 ~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iilv~~k~ 121 (173)
T d2fu5c1 55 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVE------------KMILGNKC 121 (173)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCE------------EEEEEEC-
T ss_pred EEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccC-Cce------------EEEEEecc
Confidence 35678999999999999999999999999999999999999999999888654432 344 45999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 122 D 122 (173)
T d2fu5c1 122 D 122 (173)
T ss_dssp -
T ss_pred c
Confidence 8
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=1.9e-07 Score=77.01 Aligned_cols=74 Identities=24% Similarity=0.313 Sum_probs=63.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
-.+++||+.|++.+..+++.++.+++++++|||++++.||+++..|+.+....... ...+++|+||+
T Consensus 52 ~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-------------~~~~~~v~nk~ 118 (170)
T d1ek0a_ 52 VKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK-------------DIIIALVGNKI 118 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-------------TCEEEEEEECG
T ss_pred ccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc-------------ccceeeeeccc
Confidence 34779999999999999999999999999999999999999999998877665443 23455999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 119 d~~~~~~ 125 (170)
T d1ek0a_ 119 DMLQEGG 125 (170)
T ss_dssp GGGGSSC
T ss_pred ccccccc
Confidence 9887654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.2e-07 Score=77.84 Aligned_cols=69 Identities=32% Similarity=0.496 Sum_probs=63.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|++.+...++.++++++++++|||++++.+|+++..|+..+.+.....++|++ +||||+|
T Consensus 52 ~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 119 (166)
T d1ctqa_ 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV------------LVGNKCD 119 (166)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEE------------EEEECTT
T ss_pred eeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEE------------EEecccc
Confidence 4678999999999999999999999999999999999999999999999988776677766 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 120 l 120 (166)
T d1ctqa_ 120 L 120 (166)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.2e-07 Score=76.55 Aligned_cols=67 Identities=27% Similarity=0.467 Sum_probs=50.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|++.+..+++.++++++++++|||++++.||+.+..|...+.+.... ..| +++|+||+|
T Consensus 57 ~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iilv~~k~d 123 (170)
T d2g6ba1 57 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH-DVA------------LMLLGNKVD 123 (170)
T ss_dssp EEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECCS
T ss_pred EEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCC-Cce------------EEEEEeeec
Confidence 4679999999999999999999999999999999999999999988877776543 334 459999988
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.5e-07 Score=77.97 Aligned_cols=68 Identities=26% Similarity=0.403 Sum_probs=59.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|++.+..+++.++..++++++|||++++.||+.+..|+..+.+.... ++|++ |||||+
T Consensus 52 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~pii------------lv~nK~ 118 (173)
T d2a5ja1 52 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS-NMVIM------------LIGNKS 118 (173)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEEE------------EEEECT
T ss_pred EEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCC-CCeEE------------EEecCC
Confidence 44678999999999999999999999999999999999999999999888765442 45554 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 119 D 119 (173)
T d2a5ja1 119 D 119 (173)
T ss_dssp T
T ss_pred c
Confidence 9
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.9e-07 Score=76.93 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=59.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+||++|++.|..+++.++++++++++|||++++.+|+++..|...+.+.... ++|++ +||||+
T Consensus 55 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~ii------------lvgnK~ 121 (170)
T d1r2qa_ 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP-NIVIA------------LSGNKA 121 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEEE------------EEEECG
T ss_pred EEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCC-CceEE------------eecccc
Confidence 34679999999999999999999999999999999999999999999888765432 45544 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 122 D 122 (170)
T d1r2qa_ 122 D 122 (170)
T ss_dssp G
T ss_pred c
Confidence 9
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=1.7e-07 Score=76.80 Aligned_cols=69 Identities=26% Similarity=0.415 Sum_probs=59.1
Q ss_pred ccceeeeccCCCCCch-hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
....++++.|...+.. .++.++.+++++++|||++++.||+++..|+.++.+.....++|++ +||||
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~------------lvgnK 118 (165)
T d1z06a1 51 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI------------LVGNK 118 (165)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE------------EEEEC
T ss_pred eEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEE------------EEecc
Confidence 3466889888777654 5678899999999999999999999999999999888776677766 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 119 ~D 120 (165)
T d1z06a1 119 CD 120 (165)
T ss_dssp TT
T ss_pred cc
Confidence 88
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=98.33 E-value=2.4e-07 Score=75.85 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=97.3
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+||++|++.|...+..++.+++++++|||++++.+|..+..|...+.+.....++|++ +||||
T Consensus 46 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~------------lv~nK 113 (164)
T d1zd9a1 46 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL------------VLGNK 113 (164)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE------------EEEEC
T ss_pred eEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEE------------EEEec
Confidence 345789999999999999999999999999999999999999999988888776665567766 99999
Q ss_pred ccccc---chhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 302 TCLES---FQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 302 ~Dl~~---~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.|+.. .+.+....+...+...+++|+||||++|.||+++|++|++.
T Consensus 114 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 114 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence 99854 34555556666667778899999999999999999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=98.28 E-value=5e-07 Score=74.56 Aligned_cols=111 Identities=9% Similarity=0.100 Sum_probs=93.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|++|+..+...+..++++++++++|||+++..++.++..|+....+.......|++ +|+||+|+
T Consensus 58 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~pii------------iv~NK~Dl 125 (173)
T d1e0sa_ 58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL------------IFANKQDL 125 (173)
T ss_dssp EEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE------------EEEECTTS
T ss_pred eEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceee------------eeeecccc
Confidence 348999999999999999999999999999999999999999988776665544455655 99999998
Q ss_pred cc---chhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ES---FQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~---~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.. ...+...++...+...+++|+||||++|+||+|+|+.|.+.
T Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 126 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHh
Confidence 54 44566666666666778899999999999999999999874
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.1e-07 Score=76.22 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=61.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.+..+++.++++++++++|||++++.+|+.+..|..++.+.+.....|++ +++||.
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~------------~~~nk~ 123 (177)
T d1x3sa1 56 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM------------LVGNKI 123 (177)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE------------EEEECT
T ss_pred cEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeE------------EEeecc
Confidence 34679999999999999999999999999999999999999999999999887776666655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 124 d 124 (177)
T d1x3sa1 124 D 124 (177)
T ss_dssp T
T ss_pred c
Confidence 7
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.9e-07 Score=75.71 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=53.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|+..+ .+++++|++++|||++++.||+++..|++++...+. ...+|++ +||||
T Consensus 53 ~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~------------lV~~k 115 (175)
T d2bmja1 53 LVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALA------------LVGTQ 115 (175)
T ss_dssp EEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEE------------EEEEC
T ss_pred EEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEE------------EEeee
Confidence 4679999998875 478899999999999999999999999999887654 3345554 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
.|+
T Consensus 116 ~d~ 118 (175)
T d2bmja1 116 DRI 118 (175)
T ss_dssp TTC
T ss_pred cCc
Confidence 995
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.13 E-value=1e-06 Score=80.23 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+||++||.||||||||+|++++.
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999943
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.7e-06 Score=71.28 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=59.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeec
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvg 299 (373)
..+++||+.|+..+....+.++..+++++++||.+++.||+.+..|++++.+... ..++|++ +||
T Consensus 55 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~pii------------lVg 122 (174)
T d1wmsa_ 55 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV------------ILG 122 (174)
T ss_dssp EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE------------EEE
T ss_pred eeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEE------------Eec
Confidence 3467999999999999999999999999999999999999999999988877543 3345655 999
Q ss_pred cccc
Q psy16673 300 STTC 303 (373)
Q Consensus 300 nK~D 303 (373)
||+|
T Consensus 123 nK~D 126 (174)
T d1wmsa_ 123 NKID 126 (174)
T ss_dssp ECTT
T ss_pred cccc
Confidence 9999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.11 E-value=3.7e-06 Score=75.67 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
..+||.|||-||||||||+|.++..
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4589999999999999999999954
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=1.3e-06 Score=71.35 Aligned_cols=67 Identities=27% Similarity=0.436 Sum_probs=57.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..+++.++++++++++|||.+++.||+++..|+......... ..| ++++++|.|
T Consensus 52 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------~i~~~~k~d 118 (166)
T d1g16a_ 52 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND-EAQ------------LLLVGNKSD 118 (166)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC-cce------------eeeecchhh
Confidence 4678999999999999999999999999999999999999999988877776553 223 447888877
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.04 E-value=1.2e-06 Score=78.13 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.+..++|+|+|.||||||||+|++.+
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~ 134 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAK 134 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCceEEEEEecCccchhhhhhhhhc
Confidence 45678999999999999999999994
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.03 E-value=1.8e-06 Score=72.02 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=79.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHH----------HHHHHhhccCCCCCchhhccccccce
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY----------FEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~----------~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
+++|||+|++.|..+++.+++.++++++|||+++..+|.....| ...+.........|
T Consensus 44 ~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~------------ 111 (195)
T d1svsa1 44 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS------------ 111 (195)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSE------------
T ss_pred eeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCC------------
Confidence 46999999999999999999999999999999999988543322 22222222233344
Q ss_pred eeeeccccccccchhhhhhHH--------------------HHHhh------hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQSVKCYFE--------------------EIREQ------RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~--------------------~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+++++||+|+...+....... ..+.. ...+.|+||||++|.||+++|+.+.+.
T Consensus 112 ~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 112 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence 559999999855543322221 11111 234678899999999999999998774
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.00 E-value=5.6e-06 Score=74.65 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccC
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYS 36 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~ 36 (373)
..+|+|+|+.++|||||+|.+++..+.
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~l 50 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFL 50 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence 348999999999999999999987763
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=1.3e-05 Score=71.82 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=41.7
Q ss_pred eeeeccccccc-------------hhHhHHhhhhhcCeEE-EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDLQ-------------FPAMRRLSIATAHAFL-LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.++|++|... ...+...|+...+.++ +|.+.+..-+-..+..|.+.+.. ...++++|.||
T Consensus 127 l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~-----~~~r~i~Vltk 201 (299)
T d2akab1 127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-----QGQRTIGVITK 201 (299)
T ss_dssp EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT-----TCSSEEEEEEC
T ss_pred eeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc-----CCCceeeEEec
Confidence 88999999421 1245566777777555 55555554444444445444322 34678899999
Q ss_pred cccccc
Q psy16673 211 SDMTSH 216 (373)
Q Consensus 211 ~Dl~~~ 216 (373)
.|+..+
T Consensus 202 ~D~~~~ 207 (299)
T d2akab1 202 LDLMDE 207 (299)
T ss_dssp GGGSCT
T ss_pred cccccc
Confidence 999863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.93 E-value=1.3e-05 Score=71.25 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+||-|||-||||||||+|+++..
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 69999999999999999999944
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=1.2e-05 Score=68.83 Aligned_cols=114 Identities=11% Similarity=-0.023 Sum_probs=71.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccch----------hhHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF----------QSVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~----------~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
.++++|++|++.++..+..++.+++++++++|.++...+ .+...+.+.+.......++|++
T Consensus 48 ~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~ii--------- 118 (221)
T d1azta2 48 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI--------- 118 (221)
T ss_dssp EEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEE---------
T ss_pred EEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEE---------
Confidence 467999999999999999999999999999999975432 2233333444444433455655
Q ss_pred eeeeeccccccccchhhhhh-HHHHHhhhcCCeEEEeccCC----CcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQLLECSAKD----NYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~-~~~~~a~~~~~~~~E~SAkt----g~nv~elf~~i~~~~~ 349 (373)
|+|||+|+...+..+.. .-+.+-....-+.-+.++.. ..+++++++.+.+...
T Consensus 119 ---l~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~ 176 (221)
T d1azta2 119 ---LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFL 176 (221)
T ss_dssp ---EEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---EEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHH
Confidence 99999999877765432 22332222222223334433 3346666666655443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.71 E-value=0.00035 Score=59.00 Aligned_cols=113 Identities=10% Similarity=0.051 Sum_probs=62.8
Q ss_pred CccEEEecccccccccc------cccccccceeeeccCCCCCch-------hhhhc-cccccEEEEEEecCCccc-hhhH
Q psy16673 201 EIPIVVAGNKSDMTSHH------RAVHLEDVDILDTCGDLQFPA-------MRRLS-IATAHAFLLVYSTTCLES-FQSV 265 (373)
Q Consensus 201 ~~pi~ivgnK~Dl~~~~------r~~~~~~~~~~dtag~~~~~~-------~~~~s-~~~a~~~i~v~dvt~~~S-~~~v 265 (373)
.+|+..+.+..|+...- +.....+.-++||+|...+.. +.... ....+-.++|.+++.... .+.+
T Consensus 67 ~v~~~~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 146 (211)
T d1j8yf2 67 GVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA 146 (211)
T ss_dssp TCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred CcceeecccchhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH
Confidence 46777777766653210 112334567889999755532 11111 112356788888887543 2222
Q ss_pred HHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHH
Q psy16673 266 KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKE 339 (373)
Q Consensus 266 ~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~e 339 (373)
..++.. .+.. -++.+|.|....-. ..-.++...++|+.++| +|++|++
T Consensus 147 ~~~~~~----~~~~----------------~lI~TKlDet~~~G----~~l~~~~~~~lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 147 SKFNQA----SKIG----------------TIIITKMDGTAKGG----GALSAVAATGATIKFIG--TGEKIDE 194 (211)
T ss_dssp HHHHHH----CTTE----------------EEEEECTTSCSCHH----HHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred hhhhcc----cCcc----------------eEEEecccCCCccc----HHHHHHHHHCcCEEEEe--CCCCccc
Confidence 222211 1110 17789999765533 33445567889988888 6988865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.62 E-value=5e-05 Score=60.51 Aligned_cols=111 Identities=7% Similarity=0.054 Sum_probs=96.5
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|+.|...+...+..++..+++++++||++++.++..+..|..++........+|++ +++||.|+
T Consensus 46 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------------~v~~k~d~ 113 (160)
T d1r8sa_ 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL------------VFANKQDL 113 (160)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEE------------EEeecccc
Confidence 457899999999999999999999999999999999999999988888877666666655 99999987
Q ss_pred cc---chhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ES---FQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~---~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.+ .+.+....+..++...+++|+||||+||+||+++|+.|++.
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp TTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence 54 45666667777888889999999999999999999999873
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=1.5e-05 Score=66.64 Aligned_cols=111 Identities=16% Similarity=0.110 Sum_probs=70.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccch----------hhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF----------QSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~----------~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
+.++|++|++.+...+..+++.+++++++|+.++..++ +....++..+.+.....++|++
T Consensus 46 ~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~pii---------- 115 (200)
T d1zcba2 46 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII---------- 115 (200)
T ss_dssp EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE----------
T ss_pred eeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEE----------
Confidence 45899999999999999999999999999999986654 3334444555444444455654
Q ss_pred eeeeccccccccchhhhhh---------------------HHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQSVKCY---------------------FEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~---------------------~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+|||+|+...+..... ..+.+.. ...+.+++|||+++.||+++|+.+.+.
T Consensus 116 --lv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 116 --LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp --EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred --EEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence 99999998554322111 1111111 123567899999999999999988764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=5.4e-05 Score=62.80 Aligned_cols=115 Identities=10% Similarity=-0.013 Sum_probs=84.1
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc-----------hhhHHHHHHHHHhhccCCCCCchhhccc
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-----------FQSVKCYFEEIREQRQDFQFPAMRRLSI 289 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S-----------~~~v~~~~~~i~~~~~~~~~p~v~~~~~ 289 (373)
....+++||++|++.+...+..+++++++++++||.++..+ ++....|...+..... .++|
T Consensus 43 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-~~~~------- 114 (200)
T d2bcjq2 43 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF-QNSS------- 114 (200)
T ss_dssp SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGG-SSSE-------
T ss_pred cceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhc-cCcc-------
Confidence 34557899999999999999999999999999999998754 3445556666555433 2444
Q ss_pred cccceeeeeccccccccchhhhhhHHHHHh--------------------------hhcCCeEEEeccCCCcCHHHHHHH
Q psy16673 290 ATAHAFLLVYSTTCLESFQSVKCYFEEIRE--------------------------QRQDFQLLECSAKDNYNIKEVFRT 343 (373)
Q Consensus 290 ~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a--------------------------~~~~~~~~E~SAktg~nv~elf~~ 343 (373)
+++++||.|+...+.+........+ ....+.++||||++|.||+++|+.
T Consensus 115 -----~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~ 189 (200)
T d2bcjq2 115 -----VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 189 (200)
T ss_dssp -----EEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred -----EEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHH
Confidence 4599999998766544433222111 123356899999999999999999
Q ss_pred HHHHh
Q psy16673 344 FLTLS 348 (373)
Q Consensus 344 i~~~~ 348 (373)
+.+..
T Consensus 190 i~~~I 194 (200)
T d2bcjq2 190 VKDTI 194 (200)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87743
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=0.00056 Score=57.73 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..++.-|+++|++||||||.+=++.
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3445678999999999999887777
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.45 E-value=0.00082 Score=56.46 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=55.6
Q ss_pred CccEEEeccccccccc------ccccccccceeeeccCCCCCchh--hh---h-ccccccEEEEEEecCCccch-hhHHH
Q psy16673 201 EIPIVVAGNKSDMTSH------HRAVHLEDVDILDTCGDLQFPAM--RR---L-SIATAHAFLLVYSTTCLESF-QSVKC 267 (373)
Q Consensus 201 ~~pi~ivgnK~Dl~~~------~r~~~~~~~~~~dtag~~~~~~~--~~---~-s~~~a~~~i~v~dvt~~~S~-~~v~~ 267 (373)
.+|+..+.+..|+... .......+.-++||+|...+... .. . .....+-.++|.|.+....- +.+..
T Consensus 65 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~ 144 (207)
T d1ls1a2 65 GVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 144 (207)
T ss_dssp TCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCccccccccchhhHHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHH
Confidence 4566665555554321 11223344568899997666432 11 1 12344677888888776432 22222
Q ss_pred HHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHH
Q psy16673 268 YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIK 338 (373)
Q Consensus 268 ~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~ 338 (373)
+++.+ +..+ ++..|.|....-. ..-.++...+.|+.+++ +|++.+
T Consensus 145 f~~~~----~~~~----------------~I~TKlDe~~~~G----~~l~~~~~~~~Pi~~i~--~Gq~pe 189 (207)
T d1ls1a2 145 FDEKV----GVTG----------------LVLTKLDGDARGG----AALSARHVTGKPIYFAG--VSEKPE 189 (207)
T ss_dssp HHHHT----CCCE----------------EEEECGGGCSSCH----HHHHHHHHHCCCEEEEC--------
T ss_pred HHhhC----CCCe----------------eEEeecCccccch----HHHHHHHHHCCCEEEEe--CCCChh
Confidence 22221 1111 7889999654432 23444566788887775 455444
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00092 Score=56.25 Aligned_cols=37 Identities=3% Similarity=-0.148 Sum_probs=26.2
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKE 339 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~e 339 (373)
++..|.|....-. ..-..+...++|+.++| +|++|++
T Consensus 159 lIlTKlDe~~~~G----~~l~~~~~~~~Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 159 ITLTKLDGTAKGG----VIFSVADQFGIPIRYIG--VGERIED 195 (211)
T ss_dssp EEEECCTTCTTTT----HHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred EEEeecCCCCCcc----HHHHHHHHHCCCEEEEe--CCCCccc
Confidence 7889999765533 23444567788988888 8888854
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.34 E-value=0.0011 Score=55.66 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred CccEEEecccccccccc------cccccccceeeeccCCCCCchh--hhh-----cc-----ccccEEEEEEecCCcc-c
Q psy16673 201 EIPIVVAGNKSDMTSHH------RAVHLEDVDILDTCGDLQFPAM--RRL-----SI-----ATAHAFLLVYSTTCLE-S 261 (373)
Q Consensus 201 ~~pi~ivgnK~Dl~~~~------r~~~~~~~~~~dtag~~~~~~~--~~~-----s~-----~~a~~~i~v~dvt~~~-S 261 (373)
.+|+..+.+..|+...- ......++-++||+|...+..- ... .. ..-+-.++|.|++... .
T Consensus 61 ~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~ 140 (207)
T d1okkd2 61 SIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG 140 (207)
T ss_dssp TCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH
T ss_pred CceEEeccCCccHHHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH
Confidence 45665555555543211 1112334568899997665431 111 01 1235678888888754 2
Q ss_pred hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHH
Q psy16673 262 FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKE 339 (373)
Q Consensus 262 ~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~e 339 (373)
...+..++..+ ... =++..|.|....-.. .-.++...++|+.++| +|++.+.
T Consensus 141 ~~~~~~~~~~~-~~~-------------------~lI~TKlDet~~~G~----~l~~~~~~~~Pi~~i~--~Gq~p~D 192 (207)
T d1okkd2 141 LEQAKKFHEAV-GLT-------------------GVIVTKLDGTAKGGV----LIPIVRTLKVPIKFVG--VGEGPDD 192 (207)
T ss_dssp HHHHHHHHHHH-CCS-------------------EEEEECTTSSCCCTT----HHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred HHHHHHhhhcc-CCc-------------------eEEEeccCCCCCccH----HHHHHHHHCCCEEEEe--CCCChHh
Confidence 33333333322 111 178899997655332 2334566788987777 5777543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.22 E-value=0.00031 Score=59.10 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=67.8
Q ss_pred ccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 219 AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 219 ~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
......+.++||+|...|..-.-.....+|++++|+|+.++...+....|.-.... ++| .++++
T Consensus 63 ~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-----gi~-----------~iiv~ 126 (204)
T d2c78a3 63 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVP-----------YIVVF 126 (204)
T ss_dssp ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-----TCC-----------CEEEE
T ss_pred EeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCC-----------eEEEE
Confidence 34455678999999999988888888999999999999999888776655543332 233 24477
Q ss_pred ccccccccchh----hhhhHHHHHhh----hcCCeEEEeccCCC
Q psy16673 299 YSTTCLESFQS----VKCYFEEIREQ----RQDFQLLECSAKDN 334 (373)
Q Consensus 299 gnK~Dl~~~r~----v~~~~~~~~a~----~~~~~~~E~SAktg 334 (373)
.||+|+.+... +..+....+.. ...++++..||..|
T Consensus 127 iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 127 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp EECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence 89999854322 22222222222 12367999998654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=7.4e-05 Score=63.77 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
..+++|.+|||||||+|++..+
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCCHHHHHHhhcch
Confidence 5799999999999999999843
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.03 E-value=0.0015 Score=55.47 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=55.0
Q ss_pred ccccccEEEEEEecCCc-cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh
Q psy16673 243 SIATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 321 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~ 321 (373)
...+.|.+++|+++..+ -+..-+..+.-..... ++| .+||.||+||.+...........-...
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~----~i~------------pvIvlnK~DL~~~~~~~~~~~~~~~~~ 70 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN----ELE------------TVMVINKMDLYDEDDLRKVRELEEIYS 70 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT----TCE------------EEEEECCGGGCCHHHHHHHHHHHHHHT
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc----CCC------------EEEEEeCcccCCHHHHHHHHHhhcccc
Confidence 34677889999988775 3445555544333222 333 459999999976543222111111224
Q ss_pred cCCeEEEeccCCCcCHHHHHHHH
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i 344 (373)
.+.+.+.+||++|.|++++.+.+
T Consensus 71 ~~~~v~~vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 71 GLYPIVKTSAKTGMGIEELKEYL 93 (225)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHH
T ss_pred cceeEEEeccccchhHhhHHHHh
Confidence 45789999999999999987755
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.96 E-value=0.00021 Score=57.96 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+||+|+|++|+|||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 4899999999999999999983
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.96 E-value=0.00034 Score=58.48 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=49.4
Q ss_pred ceeeeccCCCCCc-hhhhhccccccEEEEEEecCCccch-hhHHHHHHHH-Hhhcc-CCCCCchhhccccccceeeeecc
Q psy16673 225 VDILDTCGDLQFP-AMRRLSIATAHAFLLVYSTTCLESF-QSVKCYFEEI-REQRQ-DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 225 ~~~~dtag~~~~~-~~~~~s~~~a~~~i~v~dvt~~~S~-~~v~~~~~~i-~~~~~-~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
+.++|+.|++.+. .+...++..++++++|+|+++..++ .+...+...+ ..... ...+| +++|+|
T Consensus 49 ~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~p------------ilvv~N 116 (207)
T d2fh5b1 49 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS------------LLIACN 116 (207)
T ss_dssp EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCE------------EEEEEE
T ss_pred eeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCc------------EEEEEE
Confidence 3478899988775 4566778999999999999997764 4555544433 33222 22345 449999
Q ss_pred ccccccch
Q psy16673 301 TTCLESFQ 308 (373)
Q Consensus 301 K~Dl~~~r 308 (373)
|+|+...+
T Consensus 117 K~Dl~~a~ 124 (207)
T d2fh5b1 117 KQDIAMAK 124 (207)
T ss_dssp CTTSTTCC
T ss_pred CcccCCCC
Confidence 99986543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.95 E-value=0.00035 Score=56.95 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=74.9
Q ss_pred ccceeeeccCCCCCchh--------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~--------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|....... ...++..++++++|+|++++.+..+ ..|.+.+..... +.|++
T Consensus 53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~--~~pii---------- 119 (178)
T d1wf3a1 53 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLVG--KVPIL---------- 119 (178)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTT--TSCEE----------
T ss_pred eeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheecccc--chhhh----------
Confidence 34678999998655432 2345778999999999998765443 334445443322 34544
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||+|+..... +..+.+.+..+ ..+++|||++|.||+++|+.|++.
T Consensus 120 --lv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~ 168 (178)
T d1wf3a1 120 --LVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 168 (178)
T ss_dssp --EEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred --hhhcccccccCHH---HHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHh
Confidence 9999999965432 33445555554 679999999999999999999874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.87 E-value=0.00095 Score=53.82 Aligned_cols=112 Identities=6% Similarity=0.076 Sum_probs=84.2
Q ss_pred eeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccc
Q psy16673 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLE 305 (373)
Q Consensus 226 ~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~ 305 (373)
..+|+.+.+.+.......+..++++++++|.++..++.....+.............|++ +|+||+|+.
T Consensus 62 ~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK~Dl~ 129 (177)
T d1zj6a1 62 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL------------IFANKQDVK 129 (177)
T ss_dssp EEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE------------EEEECTTST
T ss_pred EEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEE------------EEEEccccc
Confidence 35666777777777888899999999999999999999888777666665555555554 999999985
Q ss_pred cch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 306 SFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 306 ~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
... .+....+...+...+++|++|||+||+||+++|+.|++..+
T Consensus 130 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 543 34444444445566789999999999999999999998654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.80 E-value=0.00094 Score=56.84 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=76.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|...+..+...+|++++|+|+.++-..+....|. .+. ..++|+ |+|.||+|
T Consensus 71 ~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~-~~~----~~~~p~------------iivlNK~D 133 (227)
T d1g7sa4 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILR----MYRTPF------------VVAANKID 133 (227)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHH----HTTCCE------------EEEEECGG
T ss_pred ccccccccceecccccchhcccccceEEEEEecccCcccchhHHHH-Hhh----cCCCeE------------EEEEECcc
Confidence 4568999999999888888899999999999999876665543332 222 234554 49999999
Q ss_pred cccchhhh-----------------hhHH-------HHHhh--------------hcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 304 LESFQSVK-----------------CYFE-------EIREQ--------------RQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 304 l~~~r~v~-----------------~~~~-------~~~a~--------------~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+....... .... ..+.. ...++++.+||++|.|+++|++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~ 213 (227)
T d1g7sa4 134 RIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (227)
T ss_dssp GSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 85432110 0000 01110 1125899999999999999999998
Q ss_pred HHhhh
Q psy16673 346 TLSQI 350 (373)
Q Consensus 346 ~~~~~ 350 (373)
.+++.
T Consensus 214 ~l~~~ 218 (227)
T d1g7sa4 214 GLAQQ 218 (227)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86643
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00036 Score=55.87 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|.+|+|||||+++++.
T Consensus 5 i~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 99999999999999999983
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.70 E-value=0.00034 Score=56.68 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-+|+|.|++|+|||||++++..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999983
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00082 Score=55.83 Aligned_cols=114 Identities=8% Similarity=0.084 Sum_probs=56.9
Q ss_pred ccccceeeeccCCCCCchhhhhc----cccccEEEEEEecC-CccchhhHHHHHHHHHh---hccCCCCCchhhcccccc
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLS----IATAHAFLLVYSTT-CLESFQSVKCYFEEIRE---QRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s----~~~a~~~i~v~dvt-~~~S~~~v~~~~~~i~~---~~~~~~~p~v~~~~~~~~ 292 (373)
....+.++|++|+..+......+ ....+.+++++|++ +..+++++..|...+.. .....++|++
T Consensus 44 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pii-------- 115 (209)
T d1nrjb_ 44 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL-------- 115 (209)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE--------
T ss_pred CCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeE--------
Confidence 34457799999999876654443 34446777777766 57778888776654332 2333455554
Q ss_pred ceeeeeccccccccchhh---hhhHHHHH---h--hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 293 HAFLLVYSTTCLESFQSV---KCYFEEIR---E--QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v---~~~~~~~~---a--~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+||+|+...+.. .....+.+ . ...++...++++....++++.+..+..
T Consensus 116 ----iv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (209)
T d1nrjb_ 116 ----IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173 (209)
T ss_dssp ----EEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC--
T ss_pred ----EEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCCceeeeccchhhhHHHHHHhhcc
Confidence 99999998554321 11111111 1 112345677777777777666655444
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.65 E-value=0.00021 Score=61.05 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
..+++|.+|||||||+|+++.+
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred eEEEECCCCccHHHHHHhhccH
Confidence 5789999999999999999943
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.63 E-value=0.00056 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+++.++|+|.|++||||||+.+.+.
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La 26 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIA 26 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 3567899999999999999999887
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.43 E-value=0.00065 Score=54.41 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+|+|+|.||+||||+.+++.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.40 E-value=0.004 Score=54.37 Aligned_cols=86 Identities=8% Similarity=0.060 Sum_probs=60.6
Q ss_pred hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh
Q psy16673 242 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 321 (373)
Q Consensus 242 ~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~ 321 (373)
..+..+|.++.|.|+.++.+..+-. .+++.+ +.| .|+|.||+|+..... ..++.+.+ ..
T Consensus 11 ~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~~-----~Kp------------~IlVlNK~DLv~~~~-~~~w~~~f-~~ 69 (273)
T d1puja_ 11 EKLKLIDIVYELVDARIPMSSRNPM--IEDILK-----NKP------------RIMLLNKADKADAAV-TQQWKEHF-EN 69 (273)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHH--HHHHCS-----SSC------------EEEEEECGGGSCHHH-HHHHHHHH-HT
T ss_pred HHHHhCCEEEEEEECCCCCCCCCHH--HHHHHc-----CCC------------eEEEEECccCCchHH-HHHHHHHH-Hh
Confidence 3578899999999999988876532 122211 234 559999999986543 33344444 34
Q ss_pred cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.+++.+||+++.++.++...+.+..
T Consensus 70 ~~~~~i~isa~~~~~~~~~~~~~~~~l 96 (273)
T d1puja_ 70 QGIRSLSINSVNGQGLNQIVPASKEIL 96 (273)
T ss_dssp TTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred cCCccceeecccCCCccccchhhhhhh
Confidence 467899999999999988887776644
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.36 E-value=0.0011 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
...+..|+|+|+||+||||++.++..
T Consensus 3 ~~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 3 KSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999999983
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.27 E-value=0.00099 Score=52.31 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|.|.||+|||||++++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999874
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0063 Score=47.51 Aligned_cols=108 Identities=11% Similarity=0.115 Sum_probs=82.2
Q ss_pred eeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccccc
Q psy16673 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306 (373)
Q Consensus 227 ~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~ 306 (373)
++++.+...+..+.+..+..++++++++|.++..++.....+.............|++ +++||.|+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------------i~~~k~d~~~ 115 (166)
T d2qtvb1 48 TFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV------------ILGNKIDAPN 115 (166)
T ss_dssp EEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEE------------EEEECTTSSS
T ss_pred EEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEE------------EEeccccccc
Confidence 5667777777788888899999999999999999999998888777776666666655 9999999854
Q ss_pred chhhh---h-------hHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 307 FQSVK---C-------YFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 307 ~r~v~---~-------~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
..... . ...+.+....+++|+||||+||+||+|+|+.|.+
T Consensus 116 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 116 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence 32211 1 1122233455678999999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.24 E-value=0.0012 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+.+||+|+|+||+||||+..++.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999887
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.18 E-value=0.00097 Score=53.17 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|.|++|+||||+++++.
T Consensus 5 I~i~G~~GsGKTTva~~L~ 23 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLA 23 (176)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999998
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=96.11 E-value=0.0039 Score=51.70 Aligned_cols=110 Identities=10% Similarity=0.002 Sum_probs=75.6
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
....+.+.||+|...|..........+|++++|+|+.+...-+....|.-...- + .+++|++.|
T Consensus 64 ~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-----~-----------~~~iIv~iN 127 (196)
T d1d2ea3 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-----G-----------VEHVVVYVN 127 (196)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-----T-----------CCCEEEEEE
T ss_pred ceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-----c-----------CCcEEEEEe
Confidence 345577899999999988777888999999999999997765544433322111 1 123558899
Q ss_pred ccccccchh----hhhhHHHHHhhh----cCCeEEEeccCCC----------cCHHHHHHHHHH
Q psy16673 301 TTCLESFQS----VKCYFEEIREQR----QDFQLLECSAKDN----------YNIKEVFRTFLT 346 (373)
Q Consensus 301 K~Dl~~~r~----v~~~~~~~~a~~----~~~~~~E~SAktg----------~nv~elf~~i~~ 346 (373)
|+|+..+.. +..+....+... ..+|++.+||++| .|+++||+.+.+
T Consensus 128 K~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~ 191 (196)
T d1d2ea3 128 KADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (196)
T ss_dssp CGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence 999854322 222222333221 1378999999999 599999998876
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.05 E-value=0.0016 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+||+|+|+||+||||+...+.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998887
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0012 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=|+|+|++|||||||+++++..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999843
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.98 E-value=0.0026 Score=52.37 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=24.1
Q ss_pred CCcCCCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 3 PVMCDNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 3 ~~~~~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
|..++++.--|+|+|+||+||||++.++.
T Consensus 1 p~~~~~~~~iI~i~GppGSGKsT~a~~La 29 (196)
T d1ukza_ 1 PAFSPDQVSVIFVLGGPGAGKGTQCEKLV 29 (196)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 44455566679999999999999999998
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.061 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.=.+|.|.-|+|||||+++++..
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 34788999999999999999964
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.92 E-value=0.002 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+||+|+|+||+||||+..++.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999987
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.92 E-value=0.0018 Score=53.61 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.-|+++|.||+|||||++++.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.83 E-value=0.0022 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+||+|+|+||+||||++.++.
T Consensus 1 M~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998888
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.80 E-value=0.0023 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
..+||+|+|+||+||||+..++..
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999983
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.80 E-value=0.0019 Score=52.90 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+++|+|+|+||+||||++..+.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998887
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0026 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+||+|+|+||+||||+...+.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0022 Score=50.34 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|+|++||||||+...+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999887
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.76 E-value=0.0036 Score=50.86 Aligned_cols=112 Identities=22% Similarity=0.322 Sum_probs=94.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.++|++|+..+..+++.++..+++++++||.+++.+|+++..|++++..... ..++|++ +|||
T Consensus 52 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~i------------lv~n 119 (184)
T d1vg8a_ 52 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV------------VLGN 119 (184)
T ss_dssp EEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEE------------EEEE
T ss_pred EEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEE------------EEEE
Confidence 467899999999999999999999999999999999999999999998877643 2345655 9999
Q ss_pred ccccccchhhhhhHHHHH-hhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 301 TTCLESFQSVKCYFEEIR-EQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~-a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+|+.+.+ +..++.+.+ +...+++|+||||++|.||+++|+.+++.+
T Consensus 120 K~Dl~~~~-~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 120 KIDLENRQ-VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167 (184)
T ss_dssp CTTSSCCC-SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eecccccc-hhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 99997655 444455555 456789999999999999999999999865
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0029 Score=51.57 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|++||||+||+++++.
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999984
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.65 E-value=0.0027 Score=53.88 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=55.0
Q ss_pred cccccEEEEEEecCCc-cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHH--HHHhh
Q psy16673 244 IATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE--EIREQ 320 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~--~~~a~ 320 (373)
..+.|.+++|+++.++ -++.-+..+.-.... .++ ..+||.||+||..+........ ...-.
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i------------~pvIvlnK~DL~~~~~~~~~~~~~~~~y~ 71 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDI------------QPIICITKMDLIEDQDTEDTIQAYAEDYR 71 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTC------------EEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCC------------CEEEEEecccccccHHHHHHHHHHHHHHh
Confidence 4677888999998775 445555554433222 233 3459999999976543322222 22234
Q ss_pred hcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 321 RQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 321 ~~~~~~~E~SAktg~nv~elf~~i 344 (373)
..|.+.+.+||++|.|++++.+.+
T Consensus 72 ~~g~~v~~~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 72 NIGYDVYLTSSKDQDSLADIIPHF 95 (231)
T ss_dssp HHTCCEEECCHHHHTTCTTTGGGG
T ss_pred hccccceeeecCChhHHHHHHHhh
Confidence 568999999999999998876543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0028 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.|.|.|++|+|||||+..++.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0029 Score=51.26 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+||+|+|+||+||||+..++.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998887
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0035 Score=51.34 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|++||||+||+++++.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999983
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0042 Score=50.84 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|+|+|+||+||||.+.++.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999887
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.37 E-value=0.0035 Score=50.14 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
||+++|.+||||||+...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 69999999999999998886
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.37 E-value=0.004 Score=49.70 Aligned_cols=19 Identities=16% Similarity=0.529 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|.|+|.+|+|||||+++++
T Consensus 4 i~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5699999999999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.34 E-value=0.0056 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++..-|+++|.||+||||++.+++
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3445579999999999999999997
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.27 E-value=0.048 Score=42.39 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=86.5
Q ss_pred eeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccccc
Q psy16673 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306 (373)
Q Consensus 227 ~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~ 306 (373)
.++..+...+.......+...+++++++|+++..++.....+.............| +++++||+|+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------i~iv~nk~Dl~~ 120 (169)
T d1upta_ 53 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI------------LVVFANKQDMEQ 120 (169)
T ss_dssp EEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE------------EEEEEECTTSTT
T ss_pred Eeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccce------------EEEEEeeccccc
Confidence 55566667777777788889999999999999999988888665555544433344 459999999865
Q ss_pred c---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 307 F---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 307 ~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
. ..+....+..++...+++|+||||++|.||+++|+.|++..
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165 (169)
T ss_dssp CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4 34666666777788889999999999999999999999854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.25 E-value=0.005 Score=51.17 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~ 44 (373)
.++|+|+.|+|||||++.++ .-..|+-+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~-----gl~~p~~G 56 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTIS-----TYLKPLKG 56 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHT-----TSSCCSEE
T ss_pred EEEEECCCCChHHHHHHHHh-----cccccCCC
Confidence 48899999999999999998 44555555
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.009 Score=46.97 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=77.7
Q ss_pred cceeeeccCCCCCch--------hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~--------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
...++|+.|...... ....++..++.+++++|.++..+++....|...+..... ++|+
T Consensus 50 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~i------------ 115 (161)
T d2gj8a1 50 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPI------------ 115 (161)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCE------------
T ss_pred eeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhccc--ccce------------
Confidence 355778888655432 133467889999999999999999888877776665543 3554
Q ss_pred eeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
++|+||+|+..+.. .+.+..+.+++++||++|.||+++++.|++.
T Consensus 116 ilv~NK~Dl~~~~~-------~~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 116 TVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp EEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred eeccchhhhhhhHH-------HHHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 49999999865432 2334567899999999999999999999873
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0054 Score=52.51 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
+|+|+|++|+|||||++-+.
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~ 50 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQ 50 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999888
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.0047 Score=50.19 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|++|||||||++++..
T Consensus 5 ivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999873
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=95.13 E-value=0.0057 Score=52.39 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~ 44 (373)
=+++|+|++|+|||||++-++ .-+.|+-+
T Consensus 29 e~vaivG~sGsGKSTLl~ll~-----gl~~p~~G 57 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLE-----RFYQPTAG 57 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHT-----TSSCCSBS
T ss_pred CEEEEECCCCCCHHHHHHHHH-----HhhCCCCC
Confidence 379999999999999999888 44445544
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0069 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+.+..-++++||+||||||+++..+..
T Consensus 39 ~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 39 QRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp TSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred hccCCCCeEEEecCCcccHHHHHHHHH
Confidence 344455799999999999999988873
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.10 E-value=0.0071 Score=48.97 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=75.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|+.|+..|...+......+|++++++|+++....+....+ ..+.. .++|++ +|.||+|+
T Consensus 61 ~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~----~~~p~i------------iv~NKiD~ 123 (179)
T d1wb1a4 61 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH----FNIPII------------VVITKSDN 123 (179)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCBC------------EEEECTTS
T ss_pred ccccccccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh----cCCcce------------eccccccc
Confidence 45778888888888888888899999999999997665543322 22222 346665 99999998
Q ss_pred ccchhhh---hhHHHHHhh---hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVK---CYFEEIREQ---RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~---~~~~~~~a~---~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
....... ......+.. ..+.++++|||++|.|++++++.|++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l 173 (179)
T d1wb1a4 124 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 173 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence 6654322 111222222 2346899999999999999999998754
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.07 E-value=0.0059 Score=52.65 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
+++|+|++|+|||||++-++
T Consensus 43 ~iaivG~sGsGKSTLl~ll~ 62 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLIT 62 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 79999999999999998887
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.05 E-value=0.0056 Score=50.26 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|++|||||||+++++.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999873
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.03 E-value=0.0057 Score=49.04 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|.|.+|+||||+++++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999999886
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0069 Score=52.16 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~ 44 (373)
+++|+|++|+|||||++-+. .-+.|+-+
T Consensus 42 ~vaivG~sGsGKSTLl~li~-----gl~~p~~G 69 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQ-----NLYQPTGG 69 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHT-----TSSCCSEE
T ss_pred EEEEECCCCCcHHHHHHHHh-----cccCCCcC
Confidence 79999999999999999888 44555544
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.89 E-value=0.0089 Score=47.51 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++-+-|.|+|.||+||||+...+.
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3455779999999999999998886
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.83 E-value=0.0071 Score=48.69 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.8
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|.|.+||||||+++.+.
T Consensus 4 ivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4567999999999999886
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.82 E-value=0.0087 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|+|-|+||+||||+..++.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998887
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.77 E-value=0.007 Score=48.14 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
+|+++|.+|+||||+...+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999887
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.71 E-value=0.008 Score=47.79 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|.|++|+||||+.+.+.
T Consensus 7 I~l~G~~GsGKSTia~~La 25 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALA 25 (176)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998887
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.0098 Score=50.44 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++|+|++|+|||||++.+.
T Consensus 28 i~~liGpsGsGKSTLl~~i~ 47 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIA 47 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 48999999999999999887
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.64 E-value=0.028 Score=46.30 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=73.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+.|++|+..|....-.....+|.+++|.|+.+...-......+..+... ++ +++|++.||+
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~----~i-----------~~iIV~vNK~ 150 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII----GV-----------KNLIIVQNKV 150 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----TC-----------CCEEEEEECG
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc----CC-----------ceeeeccccC
Confidence 34679999999999887778888999999999999874322222222222211 11 1345889999
Q ss_pred ccccchhhhh--hHHHHHhh---hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKC--YFEEIREQ---RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~--~~~~~~a~---~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+........ ...+.+.. ...+|++.+||++|.||+++++.+...
T Consensus 151 Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ 200 (205)
T d2qn6a3 151 DVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 200 (205)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence 9965543221 12222222 124799999999999999999998873
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.60 E-value=0.0087 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|.|.+|+||||+.+.+..
T Consensus 6 I~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56669999999999999873
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.60 E-value=0.0096 Score=52.10 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 64 ~vaivG~nGsGKSTLl~~i~ 83 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLIL 83 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 69999999999999999988
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.59 E-value=0.0093 Score=50.53 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++|+|++|+|||||++.+.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~ 52 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIG 52 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCcchhhHhcc
Confidence 48999999999999998776
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.011 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...-++++||+||||||+|+..+...
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccCCcEEECCCCCcHHHHHHHHHHH
Confidence 34457999999999999999988743
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.53 E-value=0.011 Score=50.40 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++|+|++|+|||||++.+.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~ 53 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIA 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 48999999999999999888
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.50 E-value=0.011 Score=47.16 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+++|.+|+||||+.+.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999887
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.013 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
=|+|+|.+|+||||+.+.+..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477799999999999999873
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.45 E-value=0.013 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++-|+|-|++|+|||||++++.
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35668999999999999999997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.41 E-value=0.052 Score=48.20 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceec
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED 45 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d 45 (373)
..|+|.|+.|+|||||++.++...-+....-+++|
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd 201 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 201 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence 35999999999999999999854333444444443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.40 E-value=0.012 Score=50.08 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++++|+.|+|||||++.+.
T Consensus 26 ~~~liGpnGaGKSTll~~i~ 45 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 36799999999999999988
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.35 E-value=0.01 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
..+++.|+||+||||+++.+.+.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998843
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.34 E-value=0.015 Score=49.61 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-|++.|+||+|||||+..+...
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.27 E-value=0.043 Score=43.44 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=74.6
Q ss_pred eeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccccc
Q psy16673 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306 (373)
Q Consensus 227 ~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~ 306 (373)
.+++.++..+.......+...+++++++|+++...+.....+...........++|++ +++||.|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~l------------i~~~K~D~~~ 128 (186)
T d1f6ba_ 61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL------------ILGNKIDRPE 128 (186)
T ss_dssp EEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE------------EEEECTTSTT
T ss_pred cccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceE------------EEEeccCccc
Confidence 4555566666667778889999999999999999998888766555554444456655 9999999854
Q ss_pred chhhhhhHHHHH----------------hhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 307 FQSVKCYFEEIR----------------EQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 307 ~r~v~~~~~~~~----------------a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.-.+.. ..+.+ ....+++|++|||++|+||+|+|+.|++.
T Consensus 129 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 129 AISEER-LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp CCCHHH-HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCCHHH-HHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 322111 01111 12334689999999999999999999874
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.029 Score=50.32 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=53.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|..-.....+-+|++++|+|+..+...+....|...... ++| .+++.||.|
T Consensus 97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~-----~~p------------~i~viNKiD 159 (341)
T d1n0ua2 97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIK------------PVVVINKVD 159 (341)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCE------------EEEEEECHH
T ss_pred EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc-----CCC------------eEEEEECcc
Confidence 467999999999998888888999999999999999998888766655543 344 449999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
.
T Consensus 160 r 160 (341)
T d1n0ua2 160 R 160 (341)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.014 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+++-|+|-|++|+|||||.+++.
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.18 E-value=0.051 Score=47.08 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=56.9
Q ss_pred ccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 219 AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 219 ~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
.+....+.++||+|...|..-.....+-+|++++|+|+.+...-+..+-|... ...++|.+ ++
T Consensus 67 ~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-----~~~~lP~i------------~f 129 (276)
T d2bv3a2 67 FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-----EKYKVPRI------------AF 129 (276)
T ss_dssp EETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-----HTTTCCEE------------EE
T ss_pred ccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-----HHcCCCEE------------EE
Confidence 33445578999999999998888888999999999999999888877666432 23356655 99
Q ss_pred ccccccccc
Q psy16673 299 YSTTCLESF 307 (373)
Q Consensus 299 gnK~Dl~~~ 307 (373)
.||.|....
T Consensus 130 INKmDr~~a 138 (276)
T d2bv3a2 130 ANKMDKTGA 138 (276)
T ss_dssp EECTTSTTC
T ss_pred Eeccccccc
Confidence 999997554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.10 E-value=0.012 Score=48.02 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-|+|+|+||+||||++.++..
T Consensus 10 iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999983
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=94.05 E-value=0.015 Score=49.45 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++++|+.|+|||||++.+.
T Consensus 31 ~~~liG~sGaGKSTll~~i~ 50 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIA 50 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 58999999999999999887
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.04 E-value=0.0089 Score=51.54 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
+++|+|++|+|||||++-+.
T Consensus 46 ~vaivG~sGsGKSTLl~ll~ 65 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIP 65 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 79999999999999998776
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.03 E-value=0.013 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+++.|+||+||||+++.+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 5899999999999999998843
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=93.91 E-value=0.057 Score=45.17 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=68.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+.|++|+..|..........+|++++|.|+.....-+....+. +... .++ +.+|++.||+
T Consensus 89 ~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~--~~~~---~gv-----------~~iiv~vNK~ 152 (222)
T d1zunb3 89 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY--IASL---LGI-----------KHIVVAINKM 152 (222)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH--HHHH---TTC-----------CEEEEEEECT
T ss_pred eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH--HHHH---cCC-----------CEEEEEEEcc
Confidence 34679999999999887777888999999999999876655444332 1111 122 3467999999
Q ss_pred ccccchh-hhhh---HHHHHhhhcC-----CeEEEeccCCCcCHH
Q psy16673 303 CLESFQS-VKCY---FEEIREQRQD-----FQLLECSAKDNYNIK 338 (373)
Q Consensus 303 Dl~~~r~-v~~~---~~~~~a~~~~-----~~~~E~SAktg~nv~ 338 (373)
|+.+... ...+ +-..+....+ ++|+.+||++|.||.
T Consensus 153 D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 153 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 9865332 1222 2233333333 579999999999984
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.89 E-value=0.013 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-|+|.|++|+|||||+.+++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 478999999999999999974
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.84 E-value=0.06 Score=46.41 Aligned_cols=66 Identities=21% Similarity=0.158 Sum_probs=53.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|...|..-.....+-+|++++|.|+.++...+....|...... ++|.+ ++.||.
T Consensus 67 ~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~-----~~p~~------------i~iNk~ 129 (267)
T d2dy1a2 67 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRM------------VVVTKL 129 (267)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEE------------EEEECG
T ss_pred cceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc-----ccccc------------cccccc
Confidence 4567999999999998888899999999999999999888877766544333 34544 999999
Q ss_pred ccc
Q psy16673 303 CLE 305 (373)
Q Consensus 303 Dl~ 305 (373)
|..
T Consensus 130 D~~ 132 (267)
T d2dy1a2 130 DKG 132 (267)
T ss_dssp GGC
T ss_pred ccc
Confidence 963
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.81 E-value=0.061 Score=42.86 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=72.6
Q ss_pred ceeeeccCCCCCc-------hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 225 VDILDTCGDLQFP-------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 225 ~~~~dtag~~~~~-------~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
+.++||+|..... ...-..+..++.+++++|+... .+.....+...+...... ..++++++
T Consensus 51 ~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~p~ii 118 (180)
T d1udxa2 51 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPA-----------LLRRPSLV 118 (180)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHH-----------HHHSCEEE
T ss_pred EEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccc-cccchhhhhhhhhccccc-----------cchhhhhh
Confidence 4577888853321 1223456788889999998654 234444444443332211 11234569
Q ss_pred eccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
|+||+|+..++.+. .........+.++|++||++|.||+++++.|.+.++..
T Consensus 119 v~NK~D~~~~~~~~--~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~~ 170 (180)
T d1udxa2 119 ALNKVDLLEEEAVK--ALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 170 (180)
T ss_dssp EEECCTTSCHHHHH--HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhHHHHH--HHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 99999997765543 22233345689999999999999999999999876543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=93.80 E-value=0.017 Score=49.26 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++++|+.|+|||||++.+.
T Consensus 34 i~~liGpnGaGKSTl~~~i~ 53 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47999999999999999998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=93.76 E-value=0.018 Score=49.07 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-+.|+|+.|+|||||++.+++
T Consensus 30 i~glvG~nGaGKSTLl~~l~G 50 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIIST 50 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999983
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.017 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++|+|++|+|||||++.+.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~ 52 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVN 52 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998887
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=93.71 E-value=0.013 Score=49.48 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|++|+|||||++.+.+
T Consensus 28 ~~~liGpsGaGKSTll~~l~G 48 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAG 48 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999983
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.02 Score=47.36 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|.|+||+||||+...+.
T Consensus 6 I~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999998887
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.56 E-value=0.019 Score=49.31 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++|+|+.|+|||||++.++
T Consensus 32 i~~liG~nGaGKSTLl~~i~ 51 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVIT 51 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37999999999999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.54 E-value=0.018 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.--|+++|+||||||.|++.+.+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 345899999999999999999843
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.0097 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..-|.++|.||+||||+.+.+.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999987
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.24 E-value=0.052 Score=43.94 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEe--ccC------------Cccch
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVA--GNK------------SDMTS 74 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~ 74 (373)
...+|+|+|.+|||||||+|++++.......... ...++.......... ..+... ... .....
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK--PGKTQTLNFYIINDE-LHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEETTT-EEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecc--cceeeeccccccccc-ceEEEEEeeccccccccccchhhhHHhh
Confidence 3458999999999999999999964321111111 111111111111000 001000 000 11122
Q ss_pred hhhcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccc
Q psy16673 75 HHRAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTC 151 (373)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~ 151 (373)
.......+|+++++.|.... ............++|+++|.||+|........
T Consensus 99 ~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~------------------------- 153 (195)
T d1svia_ 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWD------------------------- 153 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH-------------------------
T ss_pred hhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHH-------------------------
Confidence 33455677999999996422 23334444556789999999999964321100
Q ss_pred cccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHH
Q psy16673 152 GDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 192 (373)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i 192 (373)
+....+...+-...+.-++.++.......+.+..|+.++
T Consensus 154 --~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~ 192 (195)
T d1svia_ 154 --KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp --HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 111122222222345556667777777777777666544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.24 E-value=0.027 Score=48.01 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
...|++.|+||+|||+|++.+..
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhh
Confidence 44699999999999999999983
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.19 E-value=0.014 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|++|+|||||++.+.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~ 52 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIA 52 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999888
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.017 Score=48.85 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|+.|+|||||++.+.+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 489999999999999999884
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=93.01 E-value=0.027 Score=48.45 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 30 i~~iiG~sGsGKSTLl~~i~ 49 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCIN 49 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999887
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.96 E-value=0.031 Score=47.36 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.-.++|.|++|+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988743
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.94 E-value=0.025 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+++.|++|+|||+|++.+...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998844
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.94 E-value=0.037 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+++-|.|.|.+|+||||+++.|.
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999998876
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.026 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-.+++.|+||+||||++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999844
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.78 E-value=0.1 Score=42.23 Aligned_cols=108 Identities=9% Similarity=-0.002 Sum_probs=74.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+.||+|+..|..........+++++++.|+......+...+.+..+... ++| .+|++.||+|
T Consensus 79 ~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~----~~~-----------~iiv~inK~D 143 (195)
T d1kk1a3 79 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----GQK-----------NIIIAQNKIE 143 (195)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCC-----------CEEEEEECGG
T ss_pred eEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh----cCc-----------cceeeeeccc
Confidence 3568899999999888888888999999999999875444333322222221 112 2458899999
Q ss_pred cccchhhhhh--HHHHHhhhc---CCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCY--FEEIREQRQ---DFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~--~~~~~a~~~---~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+.+....... ..+.+.... .+||+++||++|.|+++|++.+.+
T Consensus 144 ~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~ 191 (195)
T d1kk1a3 144 LVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED 191 (195)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 8765432222 222222222 378999999999999999999887
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.63 E-value=0.031 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+.++-|+|-|..||||||+++.+.
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH
Confidence 4556789999999999999999887
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.62 E-value=0.022 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999998843
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.13 Score=43.28 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=66.3
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc-------hhhHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-------FQSVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S-------~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
....+.+.||+|+..|..........+|++++|.|+....- .+...+|. +.+ ..++|
T Consensus 82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~--~~~---~~gv~----------- 145 (239)
T d1f60a3 82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL--LAF---TLGVR----------- 145 (239)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH--HHH---HTTCC-----------
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH--HHH---HcCCC-----------
Confidence 34467899999999998888889999999999999987531 12222222 111 11222
Q ss_pred eeeeeccccccccchhhh-h---hHHHHHhhhc-----CCeEEEeccCCCcCHHH
Q psy16673 294 AFLLVYSTTCLESFQSVK-C---YFEEIREQRQ-----DFQLLECSAKDNYNIKE 339 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~-~---~~~~~~a~~~-----~~~~~E~SAktg~nv~e 339 (373)
.+|++.||.|+.+...-. . ++-..+.... .++|+.+||.+|.|+.+
T Consensus 146 ~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 146 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 356899999986533211 1 1112222222 36799999999999744
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.20 E-value=0.025 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=19.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...-++++||+||||||+|+..|.
T Consensus 41 ~~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCCCeEECCCCCCHHHHHHHHH
Confidence 334468999999999999987665
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.79 E-value=0.042 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+++.|++|+||||+++.++..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHH
Confidence 5899999999999999988733
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.044 Score=44.45 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=+.|.|+||+|||+|+.+|+.+
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999999844
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.76 E-value=0.043 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-|++.|+||+|||+|++.+..
T Consensus 44 giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHH
Confidence 599999999999999999984
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.64 E-value=0.035 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+++.|++|+||||++..++..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998854
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.38 E-value=0.049 Score=45.36 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+++.|++|+||||+++.++..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4899999999999999999843
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.31 E-value=0.05 Score=43.35 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.|+|+|.+|||||||+|++++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999983
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.061 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.|++.|+||+|||+|++.+..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHH
Confidence 4699999999999999999883
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.19 E-value=0.052 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+++.|++|+||||++..++..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 4899999999999999999854
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.07 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+.++-|.|.|++|+|||||.+.+.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 4567889999999999999998875
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.98 E-value=0.063 Score=44.39 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..+..+-|.+.|-||+|||||.+.+.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34556679999999999999999887
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.97 E-value=0.068 Score=42.96 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=|++.|++|+|||||+-.++..
T Consensus 16 gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHc
Confidence 4899999999999999999854
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.86 E-value=0.057 Score=45.25 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=++|.|+||+|||+|..+|+.+
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999843
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.073 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.+++.|+||+|||+|++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 3599999999999999999983
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.67 E-value=0.09 Score=41.41 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=57.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccC--CceecceecceeeeeeecceEEeeeeeEEe------------ccCCccchhhh
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYS--DRYRSTVEDLYSRDFHVGAVTIKEIPIVVA------------GNKSDMTSHHR 77 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~--~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 77 (373)
.|+|+|++|||||||+|+|++.... ..+..++.......+..... .+.+. .....+.....
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 76 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK-----TFKLVDTCGVFDNPQDIISQKMKEVTLN 76 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE-----EEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccccc-----ccccccccceeeeecccccccccccccc
Confidence 6999999999999999999854332 11112211212222222222 22221 01112223344
Q ss_pred cccccceeeeeeeccccc---hhhhhccccCCCcceEEEeccCcccc
Q psy16673 78 AVHLEDVSEWLYCELPKL---RYVIQSSSFGDEIPIVVAGNKSDMTS 121 (373)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~nk~d~~~ 121 (373)
.+..+|+++++.+..... ........+..++|+++|+||+|+..
T Consensus 77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~ 123 (171)
T d1mkya1 77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123 (171)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhh
Confidence 578999999999953322 22233344567889999999999653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.66 E-value=0.057 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=+.|.|+||+|||+|+.+|+.+
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999743
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.065 Score=46.44 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+..=|.|+|+.++|||+|+|++++..+
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344689999999999999999996543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.46 E-value=0.042 Score=48.77 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+++|+||+|||+|+.++.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 48999999999999999987
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.38 E-value=0.086 Score=45.49 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++...-|+|.|.+|+|||||+..+.+
T Consensus 41 ~~~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 41 DLDSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44445688999999999999998873
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.28 E-value=0.065 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+-+|+++|++|||||-|++++..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.14 E-value=0.083 Score=42.45 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=|+|.|++|+|||+|+..+...
T Consensus 17 gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999844
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.87 E-value=0.088 Score=42.82 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-|+|-|..|+||||++..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998776
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.80 E-value=0.13 Score=42.78 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=65.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchh-----hHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ-----SVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~-----~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
...+.+.||+|+..|...+......+|++++|+|+.+...-+ ....-+-.+.... ++ +.+|
T Consensus 80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~-----------~~iI 145 (224)
T d1jnya3 80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GL-----------DQLI 145 (224)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TC-----------TTCE
T ss_pred CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CC-----------CceE
Confidence 445789999999999999889999999999999999864221 1111010111111 11 2355
Q ss_pred eeccccccccc---h----hhhhhHHHHHhhh-----cCCeEEEeccCCCcCHHH
Q psy16673 297 LVYSTTCLESF---Q----SVKCYFEEIREQR-----QDFQLLECSAKDNYNIKE 339 (373)
Q Consensus 297 lvgnK~Dl~~~---r----~v~~~~~~~~a~~-----~~~~~~E~SAktg~nv~e 339 (373)
++.||.|+... . .+.. ....+... ..++|+.+||.+|.||.+
T Consensus 146 v~iNK~D~~~~~~~~~~~~~v~~-~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 146 VAVNKMDLTEPPYDEKRYKEIVD-QVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHH-HHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred EEEEcccCCCccccHHHHHHHHH-HHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 88999998532 1 1222 12222222 236899999999999854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.68 E-value=0.098 Score=41.71 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.=|+|.|++|+|||+|+-.++..
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 45899999999999999998854
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.68 E-value=0.084 Score=44.03 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-++|.|+||+|||+|+.+++.+
T Consensus 28 l~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999999844
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.50 E-value=0.087 Score=43.67 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhccc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
=++|.|++|+|||+|+.+++.+..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999985543
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.13 E-value=0.096 Score=47.15 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-+++.|+||+|||+|++.++
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999887
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.85 E-value=0.11 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
..-|++.|++|+|||+|++.++.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcchhHHHHHHH
Confidence 34599999999999999999983
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.42 E-value=0.13 Score=46.38 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.+.-.++++|++|||||-|+.++..
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHHh
Confidence 3455699999999999999999873
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=0.16 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.-.++++|++|||||.|+..+..
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCcchhHHHHHHHHh
Confidence 34689999999999999999873
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.08 E-value=0.13 Score=42.81 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
=++|.|+||+|||+|..+|+.+
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999843
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.81 E-value=0.13 Score=42.17 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|.|++|+|||+|+.+|+.
T Consensus 28 ~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999988863
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.80 E-value=0.19 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+.++=|.|-|.+|+|||||...+.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 4457789999999999999987664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.14 Score=41.89 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|-|..|+||||++.++.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8888999999999998886
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.72 E-value=0.11 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=15.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
=|+|.|.+|+||||+.++|.
T Consensus 6 IIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp EEEEESCC---CCTHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 39999999999999999885
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.49 E-value=0.2 Score=40.81 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+-|.|.|..|+||||+++.|.
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999998776
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=86.99 E-value=0.16 Score=43.30 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
++|.|+||+|||+|+..++.
T Consensus 38 ~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999998873
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.99 E-value=0.2 Score=41.03 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+-|.|.|..|+||||.++.|..
T Consensus 4 ~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 4588999999999999988763
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.039 Score=44.22 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
.+|+|+.|+|||||+..+.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3578999999999999885
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=0.11 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.|+|-|..||||||+++.+..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=0.17 Score=41.58 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=16.8
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|-|..|+||||++..+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999888775
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=86.68 E-value=0.18 Score=42.89 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=37.1
Q ss_pred eeeeeccccccchhH-hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
-+-+.|+++.-.... ........+|.++++.+. +..++..+......+...... ..++ ..++.|+.+...
T Consensus 117 D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~-~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 117 DYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKS-GGVRLGGIICNSRKVAN 188 (269)
T ss_dssp SEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTT-BBCEEEEEEEECCSSSC
T ss_pred CEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccc-cceeccceEEeeecCCC
Confidence 377888876432222 222223446777766655 456666666655556554422 2222 346667766543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.58 E-value=0.88 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+..-|++-|+-|+|||||++.++..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCccHHHHHHHHHhh
Confidence 3456889999999999999999855
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.52 E-value=0.17 Score=44.53 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
+++.|+||+|||.|+..+...
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 445799999999999999843
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=86.46 E-value=0.82 Score=35.82 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=61.8
Q ss_pred hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhh-hhhHHHHH
Q psy16673 240 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIR 318 (373)
Q Consensus 240 ~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v-~~~~~~~~ 318 (373)
.......+|.+++++|+..+...+. ..+...+... +.| +|+|+||+|+...+.. ..+..+.+
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~----~~~------------~i~v~nK~D~~~~~~~~~~~~~~~~ 147 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR----GRA------------SVVVFNKWDLVVHREKRYDEFTKLF 147 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT----TCE------------EEEEEECGGGSTTGGGCHHHHHHHH
T ss_pred HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc----CCc------------eeeeccchhhhcchhhhhhhHHHHH
Confidence 3445677899999999987655433 2233333322 234 5599999998544332 12222222
Q ss_pred h----hhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 319 E----QRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 319 a----~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
. ....+|++++||++|.||++|++.|.+.+...
T Consensus 148 ~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 148 REKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp HHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2 23357899999999999999999998866543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=0.2 Score=41.06 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-+++.|++|+|||+++..++..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHh
Confidence 3899999999999999988754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.98 E-value=0.14 Score=44.18 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.5
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
-+|+|+.|+||||++.++.
T Consensus 27 nvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEEECCTTTCSTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 3789999999999998773
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=85.73 E-value=0.2 Score=42.52 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
.+|.|++|+|||+|+.+++
T Consensus 32 ~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6799999999999999886
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.52 E-value=0.72 Score=38.64 Aligned_cols=108 Identities=15% Similarity=0.064 Sum_probs=57.6
Q ss_pred cccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc---h--h-hHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 220 VHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES---F--Q-SVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 220 ~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S---~--~-~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
.....+.+.||.|+..|....-.....+|++++|.|+....- + + ....-...+ . ..++|
T Consensus 99 ~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~---~~~i~----------- 163 (245)
T d1r5ba3 99 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-R---TQGIN----------- 163 (245)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-H---HTTCS-----------
T ss_pred cccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-H---HcCCC-----------
Confidence 334457789999999999888888899999999999987531 1 1 111111111 1 11222
Q ss_pred eeeeeccccccccc---hh----hhhhHHHHHhhhc------CCeEEEeccCCCcCHHHHHH
Q psy16673 294 AFLLVYSTTCLESF---QS----VKCYFEEIREQRQ------DFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~---r~----v~~~~~~~~a~~~------~~~~~E~SAktg~nv~elf~ 342 (373)
.++++.||.|+... .. +..+....+.... .++|+.+||++|.||.++++
T Consensus 164 ~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 164 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred eEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 35688999998532 11 1122222222222 36899999999999977654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=0.22 Score=41.58 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
+++.|++|+|||+++..++..
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999999988743
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=84.89 E-value=0.18 Score=41.13 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
--+++.|+++.|||.|++.++
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~ 74 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFI 74 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHH
Confidence 348999999999999999887
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=84.03 E-value=0.26 Score=43.53 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..++|+|=|.-||||||+++.+.
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHT
T ss_pred CceEEEEECCcCCCHHHHHHHHH
Confidence 35789999999999999999886
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.27 Score=40.72 Aligned_cols=20 Identities=45% Similarity=0.566 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-|+|=|.-||||||+++.+.
T Consensus 4 ~IviEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999998887
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.94 E-value=0.27 Score=42.46 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
|+.|+|++|+|||+|+..++.+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999888743
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.68 E-value=0.27 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|=|.-||||||+++.+..
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998874
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.53 E-value=0.28 Score=40.37 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
+.|.|++|+|||-|++.++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999843
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.33 E-value=0.34 Score=42.80 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|=|.-||||||+++.+..
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHS
T ss_pred eEEEEEECCccCCHHHHHHHHHH
Confidence 47999999999999999998873
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=83.30 E-value=2 Score=35.88 Aligned_cols=77 Identities=13% Similarity=-0.010 Sum_probs=43.1
Q ss_pred ccccceeeeccCCCCCch----h-----hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 221 HLEDVDILDTCGDLQFPA----M-----RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~----~-----~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
....+.++||+|...... . ........+++++|.+++...--+......+.+....+. ..
T Consensus 78 ~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~-----------~~ 146 (257)
T d1h65a_ 78 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK-----------GI 146 (257)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG-----------GG
T ss_pred ccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch-----------hh
Confidence 334578999999643211 1 112345667888888877643222223344455544432 11
Q ss_pred cceeeeeccccccccch
Q psy16673 292 AHAFLLVYSTTCLESFQ 308 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r 308 (373)
.+..|+|.||+|.....
T Consensus 147 ~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 147 WNKAIVALTHAQFSPPD 163 (257)
T ss_dssp GGGEEEEEECCSCCCGG
T ss_pred hhCEEEEEECcccCCcC
Confidence 23467999999985543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.72 E-value=0.33 Score=43.55 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.5
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
-+|+|+.|+|||+++.++.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3688999999999999874
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=81.55 E-value=0.39 Score=41.09 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=35.6
Q ss_pred eeeeeeccccccchhHhHHhh-hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLS-IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~-~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgnK~Dl~ 214 (373)
+-+.++|+++........... ...++.++++. ..+..++..+....+.+...... ...++ .++.|+.+..
T Consensus 119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~-~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVC-SGEMMAMYAANNISKGIVKYANS-GSVRLGGLICNSRNTD 190 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEE-CSSHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEEECCCCT
T ss_pred CCeEeeccCCccCHHHHHHHHHhhccceeeccc-chhHHHHHHHHHHHHHHHhhhhc-ccccccceeehhhcch
Confidence 337788987654322222211 12455555553 34455666666666656554322 33443 4677776543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.54 E-value=0.44 Score=39.02 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy16673 13 LVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~ 31 (373)
|+|-|.-|+||||+++.+.
T Consensus 6 I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 8999999999999998876
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=80.40 E-value=0.46 Score=39.31 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.|.|.|..|+||||.++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998873
|