Psyllid ID: psy16684

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MANSLAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI
ccccEEEEEEEcccccHHHHHHHHHcccccEEEccccccEEEEEccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHcccccEEEEccccccccccEEEEcccHHHHHHHHccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccc
ccccEEEEEEEEEEcccHHHHHHHHHccccEEEcccccccEEEEEccccccHHHcccccHccEEcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccEEEccHHHHHHHHHHHcccccEEEEEccccccccEEEEEccHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccEEEcccEEEEEEEEEEEccccEEEEEEccccEEEEEEEcccccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccEEEEccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHccccEEEcccccccccccccccccHccccccccccccccccHHHHHHHHHHHHcHHHccccc
MANSLAIRFktegqtnntVIEDVlrgrpgwmpvgsddtnwdifwCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCvkngnteeaelsnampmtfeiPSETALFLQEARRdshnmwivkpsggsqgrGILLFKKLSEFEEWrenkdwspkerkrsddpndieliPEVYVAQKyitnpyllegrkfDMRMYVLVTSFSPLTVWIARDGFARIAGIKYckdnfadncMHLTNTAIQLsgenlsqgrkWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLeanaapsmkatddhdyKLKYNLIQDALNVIDLEKKltgkeirvggfdkiwcggpiyqinkgmnapefckksnfynmylgcvndrDEQLEEMTKWMNILKKETVI
manslairfktegqtnntviedvlrgrPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGnteeaelsnampMTFEIPSETALFLQEARRDSHNMWivkpsggsqgrgiLLFKKLSEFEewrenkdwspkerkrsddpndielIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGkeirvggfdkiwCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI
MANSLAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI
***************NNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCV***********************************HNMWIVKP****QGRGILLFKKLSEFEEW*******************IELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNIL******
***SLAI*FKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWR*******************ELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTG****VGGFDKIWC********************************RD*******************
MANSLAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFE*****************DPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI
*ANSLAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENK****************ELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPI*******NAPE*CKKSNFYNMYLGCVNDRDEQLEEMTKWMNILK*****
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MANSLAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
Q3SZH6461 Probable tubulin polyglut yes N/A 0.962 0.895 0.412 7e-97
Q641W7461 Probable tubulin polyglut yes N/A 0.965 0.898 0.404 7e-97
A2APC3461 Probable tubulin polyglut yes N/A 0.960 0.893 0.409 5e-96
Q3SXZ7439 Probable tubulin polyglut yes N/A 0.911 0.890 0.412 5e-89
Q91V51423 Probable tubulin polyglut no N/A 0.736 0.747 0.360 8e-63
Q5PPI9423 Probable tubulin polyglut no N/A 0.736 0.747 0.360 1e-62
O95922423 Probable tubulin polyglut no N/A 0.736 0.747 0.357 4e-62
Q0VC71423 Probable tubulin polyglut no N/A 0.736 0.747 0.360 7e-62
Q23SI8433 Probable alpha-tubulin po N/A N/A 0.790 0.782 0.331 3e-56
Q9BWV7 592 Probable tubulin polyglut no N/A 0.720 0.521 0.3 3e-40
>sp|Q3SZH6|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9 PE=2 SV=1 Back     alignment and function desciption
 Score =  354 bits (909), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 182/441 (41%), Positives = 270/441 (61%), Gaps = 28/441 (6%)

Query: 6   AIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESS-MKNHQKI 64
           +IRFKT   T    + DVLR RPGW+ V  D+  WD +WCD++  +   + + M  H +I
Sbjct: 25  SIRFKT---TLMNTLMDVLRHRPGWVEV-KDEGEWDFYWCDVSWLRENFDHTYMGEHVRI 80

Query: 65  AHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARR 124
           +H+RN YE++RKNY+ +NLKR+R+Q  +     EA   +  P TFE+P E  LF++E R+
Sbjct: 81  SHFRNHYELTRKNYMVKNLKRFRKQLEREAGKLEAAKCDFFPKTFEMPCEYHLFVEEFRK 140

Query: 125 DSHNMWIVKPSGGSQGRGILLFKKLSEFEEW-----------------RENKDWSPKERK 167
           +    WI+KP   SQG+GI LF++L +  +W                 R   + S     
Sbjct: 141 NPGITWIMKPVARSQGKGIFLFRRLKDIMDWKKGTAGKKLTSLEAQPARNTVNPSGSHDT 200

Query: 168 RSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAG 227
           RS D    E+  E YVAQ+YI NPYL+ GRKFD+R+YVLV S+ PL  W+ RDGFAR + 
Sbjct: 201 RSSDDQKDEIPVENYVAQRYIENPYLIGGRKFDLRVYVLVMSYIPLRAWLYRDGFARFSN 260

Query: 228 IKYCKDNFADNCMHLTNTAIQLSGENL--SQGRKWDIQNLRLFLTAMHGREIVDELFQKI 285
            ++  ++  D  +HLTN A+Q +  +    +G KW +Q  R +L + HG E V+ LF  +
Sbjct: 261 TRFTLNSIDDQYVHLTNVAVQKTSPDYHPKKGCKWMLQRFRQYLASKHGPEAVETLFSDM 320

Query: 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKY 345
             + I +L+SV+ +++ +KHCFEL+G+DIL+  +L   LLE NA+PS+ A+   DY+LK 
Sbjct: 321 DNIFIRSLQSVQKVIISDKHCFELYGYDILIDQDLKPWLLEVNASPSLTASSQEDYELKT 380

Query: 346 NLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFY-NMYLG 404
            L++D L+++D+E +LTG+E RVGGFD +W  GP+ +   G   P+     NF  N +LG
Sbjct: 381 CLLEDTLHIVDMEARLTGREKRVGGFDLMWNDGPVSREEGG---PDLSGMGNFVTNTHLG 437

Query: 405 CVNDRDEQLEEMTKWMNILKK 425
           CVNDR EQL ++ + +   KK
Sbjct: 438 CVNDRKEQLRQLFRSLQGQKK 458
Probable tubulin polyglutamylase that forms polyglutamate side chains on tubulin. Probably acts when complexed with other proteins.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q641W7|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus GN=Ttll9 PE=2 SV=1 Back     alignment and function description
>sp|A2APC3|TTLL9_MOUSE Probable tubulin polyglutamylase TTLL9 OS=Mus musculus GN=Ttll9 PE=2 SV=2 Back     alignment and function description
>sp|Q3SXZ7|TTLL9_HUMAN Probable tubulin polyglutamylase TTLL9 OS=Homo sapiens GN=TTLL9 PE=2 SV=3 Back     alignment and function description
>sp|Q91V51|TTLL1_MOUSE Probable tubulin polyglutamylase TTLL1 OS=Mus musculus GN=Ttll1 PE=1 SV=1 Back     alignment and function description
>sp|Q5PPI9|TTLL1_RAT Probable tubulin polyglutamylase TTLL1 OS=Rattus norvegicus GN=Ttll1 PE=2 SV=1 Back     alignment and function description
>sp|O95922|TTLL1_HUMAN Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1 PE=2 SV=1 Back     alignment and function description
>sp|Q0VC71|TTLL1_BOVIN Probable tubulin polyglutamylase TTLL1 OS=Bos taurus GN=TTLL1 PE=2 SV=1 Back     alignment and function description
>sp|Q23SI8|TTLL1_TETTS Probable alpha-tubulin polyglutamylase Ttll1 OS=Tetrahymena thermophila (strain SB210) GN=Ttll1 PE=3 SV=1 Back     alignment and function description
>sp|Q9BWV7|TTLL2_HUMAN Probable tubulin polyglutamylase TTLL2 OS=Homo sapiens GN=TTLL2 PE=5 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
377520149435 probable tubulin polyglutamylase TTLL9 [ 0.925 0.912 0.450 9e-98
119596812451 tubulin tyrosine ligase-like family, mem 0.948 0.902 0.427 9e-98
92096486410 Wu:fb75c08 protein [Danio rerio] 0.927 0.970 0.449 1e-97
308321771435 probable tubulin polyglutamylase ttll9 [ 0.927 0.914 0.440 7e-97
345486399459 PREDICTED: probable tubulin polyglutamyl 0.927 0.867 0.419 1e-96
348581233464 PREDICTED: probable tubulin polyglutamyl 0.967 0.894 0.412 3e-96
383848019468 PREDICTED: probable tubulin polyglutamyl 0.895 0.820 0.439 3e-96
301765834461 PREDICTED: probable tubulin polyglutamyl 0.967 0.900 0.413 4e-96
397487465461 PREDICTED: LOW QUALITY PROTEIN: probable 0.967 0.900 0.410 1e-95
410899613431 PREDICTED: probable tubulin polyglutamyl 0.897 0.893 0.452 1e-95
>gi|377520149|ref|NP_001243693.1| probable tubulin polyglutamylase TTLL9 [Danio rerio] Back     alignment and taxonomy information
 Score =  363 bits (932), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 187/415 (45%), Positives = 267/415 (64%), Gaps = 18/415 (4%)

Query: 7   IRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESS-MKNHQKIA 65
           IR++  G TN   I+DVL  RPGW+ V  DD  WD  WCD+   +   + S M+ H +I 
Sbjct: 28  IRYRC-GLTN--TIQDVLNHRPGWVEV-KDDAEWDFNWCDVGWLRENFDHSYMEEHVRIC 83

Query: 66  HYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRD 125
           H+RN YE++RKN + +NLKRYR+   +     EA   +  P TFE+PSE  +F++E ++ 
Sbjct: 84  HFRNHYELTRKNLMVKNLKRYRKTLEREVGRLEAAKCDFFPRTFELPSEYHIFVEEFKKS 143

Query: 126 SHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQ 185
             N WI+KP   SQG+GI LF+KL +  +WR       K+  RS++  D E   E YVAQ
Sbjct: 144 PGNTWIMKPVARSQGKGIFLFRKLKDIIDWR-------KDGSRSEEQKD-EAQVESYVAQ 195

Query: 186 KYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNT 245
           +YI NPYL+ GRKFD+R+YVLVTS+ PL  W+ RDGFAR +  ++   +  D  +HLTN 
Sbjct: 196 RYIENPYLIAGRKFDLRVYVLVTSYIPLKAWLYRDGFARFSNTRFSLSSIDDQYVHLTNV 255

Query: 246 AIQLSGENL--SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGN 303
           A+Q +  +    +G KW +Q LR +LTA HG E V  LF++I  V I +L SV+  ++ +
Sbjct: 256 AVQKTAPDYDPEKGCKWQMQQLRWYLTAKHGFETVQTLFKEIDNVFIRSLLSVQKTIIND 315

Query: 304 KHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTG 363
           KHCFEL+G+DILL  +L   L+E NA+PS+ A+   DY LKY L++D L+++D+E +LTG
Sbjct: 316 KHCFELYGYDILLDQDLKPWLIEVNASPSLTASSQEDYDLKYRLLEDTLHIVDMEGRLTG 375

Query: 364 KEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTK 418
           KE R+GGFD +W  GP+Y  + G+ A          N +LGCVNDR++QL+++ K
Sbjct: 376 KEKRIGGFDLMWNDGPVY-TDVGLEA--LGSSCLVANTHLGCVNDREKQLQQLLK 427

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota
>gi|119596812|gb|EAW76406.1| tubulin tyrosine ligase-like family, member 9, isoform CRA_f [Homo sapiens] Back     alignment and taxonomy information
>gi|92096486|gb|AAI15267.1| Wu:fb75c08 protein [Danio rerio] Back     alignment and taxonomy information
>gi|308321771|gb|ADO28028.1| probable tubulin polyglutamylase ttll9 [Ictalurus furcatus] Back     alignment and taxonomy information
>gi|345486399|ref|XP_001606697.2| PREDICTED: probable tubulin polyglutamylase TTLL9-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|348581233|ref|XP_003476382.1| PREDICTED: probable tubulin polyglutamylase TTLL9-like [Cavia porcellus] Back     alignment and taxonomy information
>gi|383848019|ref|XP_003699650.1| PREDICTED: probable tubulin polyglutamylase TTLL9-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|301765834|ref|XP_002918351.1| PREDICTED: probable tubulin polyglutamylase TTLL9-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|397487465|ref|XP_003814820.1| PREDICTED: LOW QUALITY PROTEIN: probable tubulin polyglutamylase TTLL9 [Pan paniscus] Back     alignment and taxonomy information
>gi|410899613|ref|XP_003963291.1| PREDICTED: probable tubulin polyglutamylase TTLL9-like [Takifugu rubripes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
ZFIN|ZDB-GENE-030131-1582435 ttll9 "tubulin tyrosine ligase 0.923 0.910 0.456 1.1e-94
UNIPROTKB|G5E5C5441 TTLL9 "Probable tubulin polygl 0.641 0.623 0.428 3.8e-93
UNIPROTKB|Q3SZH6461 TTLL9 "Probable tubulin polygl 0.641 0.596 0.428 3.8e-93
UNIPROTKB|E2RLP6461 TTLL9 "Uncharacterized protein 0.641 0.596 0.424 3.8e-93
RGD|1359622461 Ttll9 "tubulin tyrosine ligase 0.638 0.594 0.416 1e-92
UNIPROTKB|Q641W7461 Ttll9 "Probable tubulin polygl 0.638 0.594 0.416 1e-92
MGI|MGI:1913589461 Ttll9 "tubulin tyrosine ligase 0.634 0.590 0.428 5.5e-92
UNIPROTKB|F1NZD0379 TTLL9 "Uncharacterized protein 0.860 0.973 0.433 8.9e-86
UNIPROTKB|H9KV73355 TTLL9 "Probable tubulin polygl 0.487 0.588 0.436 1.6e-73
WB|WBGene00044187417 ttll-9 [Caenorhabditis elegans 0.787 0.810 0.391 4.4e-68
ZFIN|ZDB-GENE-030131-1582 ttll9 "tubulin tyrosine ligase-like family, member 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 190/416 (45%), Positives = 270/416 (64%)

Query:     7 IRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESS-MKNHQKIA 65
             IR++  G TN   I+DVL  RPGW+ V  DD  WD  WCD+   +   + S M+ H +I 
Sbjct:    28 IRYRC-GLTNT--IQDVLNHRPGWVEV-KDDAEWDFNWCDVGWLRENFDHSYMEEHVRIC 83

Query:    66 HYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRD 125
             H+RN YE++RKN + +NLKRYR+   +     EA   +  P TFE+PSE  +F++E ++ 
Sbjct:    84 HFRNHYELTRKNLMVKNLKRYRKTLEREVGRLEAAKCDFFPRTFELPSEYHIFVEEFKKS 143

Query:   126 SHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQ 185
               N WI+KP   SQG+GI LF+KL +  +WR  KD S     RS++  D E   E YVAQ
Sbjct:   144 PGNTWIMKPVARSQGKGIFLFRKLKDIIDWR--KDGS-----RSEEQKD-EAQVESYVAQ 195

Query:   186 KYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNT 245
             +YI NPYL+ GRKFD+R+YVLVTS+ PL  W+ RDGFAR +  ++   +  D  +HLTN 
Sbjct:   196 RYIENPYLIAGRKFDLRVYVLVTSYIPLKAWLYRDGFARFSNTRFSLSSIDDQYVHLTNV 255

Query:   246 AIQLSGENLS--QGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGN 303
             A+Q +  +    +G KW +Q LR +LTA HG E V  LF++I  V I +L SV+  ++ +
Sbjct:   256 AVQKTAPDYDPEKGCKWQMQQLRWYLTAKHGFETVQTLFKEIDNVFIRSLLSVQKTIIND 315

Query:   304 KHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTG 363
             KHCFEL+G+DILL  +L   L+E NA+PS+ A+   DY LKY L++D L+++D+E +LTG
Sbjct:   316 KHCFELYGYDILLDQDLKPWLIEVNASPSLTASSQEDYDLKYRLLEDTLHIVDMEGRLTG 375

Query:   364 KEIRVGGFDKIWCGGPIYQINKGMNA-PEFCKKSNFYNMYLGCVNDRDEQLEEMTK 418
             KE R+GGFD +W  GP+Y  + G+ A    C  +N    +LGCVNDR++QL+++ K
Sbjct:   376 KEKRIGGFDLMWNDGPVYT-DVGLEALGSSCLVAN---THLGCVNDREKQLQQLLK 427
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA
UNIPROTKB|G5E5C5 TTLL9 "Probable tubulin polyglutamylase TTLL9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZH6 TTLL9 "Probable tubulin polyglutamylase TTLL9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLP6 TTLL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359622 Ttll9 "tubulin tyrosine ligase-like family, member 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q641W7 Ttll9 "Probable tubulin polyglutamylase TTLL9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913589 Ttll9 "tubulin tyrosine ligase-like family, member 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZD0 TTLL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9KV73 TTLL9 "Probable tubulin polyglutamylase TTLL9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00044187 ttll-9 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SZH6TTLL9_BOVIN6, ., -, ., -, ., -0.41260.96270.8958yesN/A
A2APC3TTLL9_MOUSE6, ., -, ., -, ., -0.40900.96030.8937yesN/A
Q3SXZ7TTLL9_HUMAN6, ., -, ., -, ., -0.41210.91140.8906yesN/A
Q641W7TTLL9_RAT6, ., -, ., -, ., -0.40490.96500.8980yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
pfam03133291 pfam03133, TTL, Tubulin-tyrosine ligase family 2e-75
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family Back     alignment and domain information 
 Score =  236 bits (605), Expect = 2e-75
 Identities = 104/308 (33%), Positives = 152/308 (49%), Gaps = 38/308 (12%)

Query: 56  SSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSET 115
                HQ + H+   YEI+RK+ L +N+KR                 + +P TF +P++ 
Sbjct: 3   LDEPYHQALNHFPGSYEITRKDLLWKNIKRQPCD--------FGRKFDFLPRTFILPTDL 54

Query: 116 ALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDI 175
           A F+     +  N WIVKPS  ++GRGI +   LS+  +  +++                
Sbjct: 55  AEFVDYFEDNERNTWIVKPSASARGRGIRITNDLSQILKQIQSRPL-------------- 100

Query: 176 ELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCK--D 233
                  V QKYI  P L++GRKFD+R+YVLVTS +PL V++ R+G  R A +KY     
Sbjct: 101 -------VVQKYIERPLLIDGRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYSPSVS 153

Query: 234 NFADNCMHLTNTAIQ------LSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAK 287
           +  D  MHLTN +IQ          N   G KW + N   +L      EI  E+   I K
Sbjct: 154 DLDDVEMHLTNYSIQKKSSSLNEDYNEPNGHKWSLFNFWKYLEEKDKEEIWLEIESIIIK 213

Query: 288 VVITALKSVECIMMGN-KHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYN 346
            ++ A      + +    +CFEL+GFD ++ +NL   LLE NA+PS+ +T   D +LK  
Sbjct: 214 TILAAEVEASRLNVQPLYNCFELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQ 273

Query: 347 LIQDALNV 354
           LI D LN 
Sbjct: 274 LIDDVLNS 281

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 100.0
KOG2156|consensus662 100.0
KOG2157|consensus497 100.0
KOG2158|consensus565 100.0
KOG2155|consensus631 100.0
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 99.96
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 99.39
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 99.23
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.22
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.22
PRK05246316 glutathione synthetase; Provisional 99.18
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 99.15
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.14
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.1
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.09
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.08
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.07
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.04
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.02
PRK14569296 D-alanyl-alanine synthetase A; Provisional 98.98
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 98.98
PLN02941328 inositol-tetrakisphosphate 1-kinase 98.98
PRK14570364 D-alanyl-alanine synthetase A; Provisional 98.92
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 98.88
PRK14572347 D-alanyl-alanine synthetase A; Provisional 98.85
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 98.84
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 98.78
PRK12458338 glutathione synthetase; Provisional 98.75
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 98.6
PLN02257434 phosphoribosylamine--glycine ligase 98.59
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 98.55
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 98.54
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 98.46
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 98.44
PRK07206416 hypothetical protein; Provisional 98.42
PRK06849389 hypothetical protein; Provisional 98.39
PRK14016 727 cyanophycin synthetase; Provisional 98.39
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 98.38
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 98.38
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 98.38
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 98.35
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 98.32
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 98.31
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 98.3
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 98.28
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 98.27
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 98.24
PRK02186 887 argininosuccinate lyase; Provisional 98.23
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 98.2
PRK06524493 biotin carboxylase-like protein; Validated 98.18
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 98.14
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 98.14
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 98.13
PLN02948 577 phosphoribosylaminoimidazole carboxylase 98.08
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 98.08
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 98.08
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 98.07
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 98.06
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 98.06
PRK08462445 biotin carboxylase; Validated 98.06
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 98.05
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.01
PRK05586447 biotin carboxylase; Validated 98.0
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 97.99
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 97.97
PRK07178472 pyruvate carboxylase subunit A; Validated 97.93
PRK08654499 pyruvate carboxylase subunit A; Validated 97.9
PRK12999 1146 pyruvate carboxylase; Reviewed 97.88
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 97.85
PLN02735 1102 carbamoyl-phosphate synthase 97.77
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 97.74
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 97.69
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 97.64
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 97.62
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 97.57
PLN02735 1102 carbamoyl-phosphate synthase 97.51
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 97.45
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 97.39
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 97.33
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 97.28
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 96.88
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 96.85
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 96.74
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 96.61
KOG0369|consensus 1176 96.51
COG2232389 Predicted ATP-dependent carboligase related to bio 96.48
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 96.42
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 96.32
KOG0238|consensus 670 95.63
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 95.09
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 94.83
KOG3895|consensus488 94.41
COG2308488 Uncharacterized conserved protein [Function unknow 94.35
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 94.23
KOG2158|consensus 565 90.98
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 88.01
PF04174 330 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; In 82.68
PHA02117397 glutathionylspermidine synthase domain-containing 82.23
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information 
Probab=100.00  E-value=1.2e-64  Score=498.82  Aligned_cols=271  Identities=39%  Similarity=0.704  Sum_probs=151.9

Q ss_pred             cCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCC
Q psy16684         58 MKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGG  137 (429)
Q Consensus        58 l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~  137 (429)
                      +.++|+||||||+.+||+|+.|+++++++.+....        .++|+|+||.||.++.+|...+.+.+.+.||+||+++
T Consensus         4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~--------~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~   75 (292)
T PF03133_consen    4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPK--------EFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNG   75 (292)
T ss_dssp             -CHHTT-TSS--EEEE-------------------------------------HHHHHHHHHHHHHTTS---EEEEES--
T ss_pred             CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCC--------cccCCcceEecHHHHHHHHHHHhcCCCCEEEEecccc
Confidence            45689999999999999999999999998876432        2789999999999999999999988888999999999


Q ss_pred             CCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEE
Q psy16684        138 SQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWI  217 (429)
Q Consensus       138 s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~  217 (429)
                      ++|+||+++++++++.++.                   .....+||||+||++|+|++|||||||+||||+|++|+++|+
T Consensus        76 ~rG~GI~l~~~~~~i~~~~-------------------~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~  136 (292)
T PF03133_consen   76 SRGRGIKLFNNLEQILRFS-------------------KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYL  136 (292)
T ss_dssp             -----EEEES-HHHHHCCH-------------------CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEE
T ss_pred             CCCCCceecCCHHHHHHHh-------------------hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeee
Confidence            9999999999999987531                   235678999999999999999999999999999999999999


Q ss_pred             EcceEEEEcCcCCC--CCCccCcccccccccccccC---CCc---CCCCccchHHHHHHHHHccccchHHHHHHHHHHHH
Q psy16684        218 ARDGFARIAGIKYC--KDNFADNCMHLTNTAIQLSG---ENL---SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVV  289 (429)
Q Consensus       218 y~~g~~R~a~~~y~--~~~~~~~~~HLTN~siqk~~---~~y---~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii  289 (429)
                      |++|++|+|+++|+  ..++.+.++||||+++||..   .++   ..+++|++..++.++..  +. ..+.+|++|..++
T Consensus       137 y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~i~~~i  213 (292)
T PF03133_consen  137 YKEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE--GI-DWEKIWEKICDII  213 (292)
T ss_dssp             ES--EEEE-SS------------------------------------EEEHHHHHHHCTTTS--SS--STTTCHHHHHHH
T ss_pred             ccCceEEeccceeeccccccccccccccccccccccccccccccccccccchhhhhhhhccc--CC-CcccchhhhhHHH
Confidence            99999999999999  78899999999999999983   222   57899999999999875  22 2455666677776


Q ss_pred             HHHHHHH-----HhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccCC
Q psy16684        290 ITALKSV-----ECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLE  358 (429)
Q Consensus       290 ~~~l~s~-----~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~~  358 (429)
                      .+++.++     ...+....+|||+||+|||||++++|||||||++|+++.+++.+..++.+|++|+|+++.++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v~~  287 (292)
T PF03133_consen  214 IKTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVVDP  287 (292)
T ss_dssp             HHHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS--
T ss_pred             HHHhhhhhhhhccccccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEeCC
Confidence            6666665     44556678999999999999999999999999999999999999999999999999986543

This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
>KOG2156|consensus Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>KOG2155|consensus Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>KOG0369|consensus Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information
>KOG0238|consensus Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>KOG3895|consensus Back     alignment and domain information
>COG2308 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function Back     alignment and domain information
>PHA02117 glutathionylspermidine synthase domain-containing protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3tig_A380 Tubulin Tyrosine Ligase Length = 380 1e-19
4i4t_F384 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-17
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380 Back     alignment and structure 
Iteration: 1

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 31/242 (12%)
Query: 100 ELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENK 159
           +L+NA P T E     + F ++   +  N+WI K S G++G GIL+    +E  ++ +N+
Sbjct: 121 DLANA-PRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ 179
Query: 160 DWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEG--RKFDMRMYVLVTSFSPLTVWI 217
                               +V+V QKY+ +P LLE   RKFD+R +VLV +     +++
Sbjct: 180 G-------------------QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYL 218
Query: 218 ARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGEN----LSQGRKWDIQNLRLFLTAMH 273
            R+G  R +   Y   NF D   HLTN  IQ           +G +   +    +L    
Sbjct: 219 YREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSL 278
Query: 274 GREIVDELFQKIAKVVITALKSVECIMMGNK---HCFELFGFDILLQDNLNVCLLEANAA 330
              + + +  +I +++   L  +E  +       H F+LFGFD ++  NL V L+E N A
Sbjct: 279 NINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGA 338
Query: 331 PS 332
           P+
Sbjct: 339 PA 340
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 2e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 Back     alignment and structure
 Score =  272 bits (697), Expect = 2e-88
 Identities = 86/396 (21%), Positives = 153/396 (38%), Gaps = 59/396 (14%)

Query: 13  GQTNNTV---IEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKL-ILESSMKNHQKIAHYR 68
              N+TV   +  +L     W  +  D+  +++   +        L       Q + +YR
Sbjct: 10  RDENSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYR 69

Query: 69  NFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSET------------- 115
              ++ RK  L + +K           T   E     P   + P+               
Sbjct: 70  GADKLCRKASLVKLIKTSPELTETC--TWFPESYVIYPTNEKTPAMRARNGLPDLANAPR 127

Query: 116 --------ALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERK 167
                   + F ++   +  N+WI K S G++G GIL+    +E  ++ +N+        
Sbjct: 128 TDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQG------- 180

Query: 168 RSDDPNDIELIPEVYVAQKYITNPYLLE--GRKFDMRMYVLVTSFSPLTVWIARDGFARI 225
                       +V+V QKY+ +P LLE   RKFD+R +VLV +     +++ R+G  R 
Sbjct: 181 ------------QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRT 226

Query: 226 AGIKYCKDNFADNCMHLTNTAIQLSGENLSQ----GRKWDIQNLRLFLTAMHGREIVDEL 281
           +   Y   NF D   HLTN  IQ            G +   +    +L       + + +
Sbjct: 227 SSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSI 286

Query: 282 FQKIAKVVITALKSVECIMMGNK---HCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338
             +I +++   L  +E  +       H F+LFGFD ++  NL V L+E N AP+      
Sbjct: 287 LCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQK-- 344

Query: 339 HDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKI 374
              +L   ++  A++ +    +   K      F K+
Sbjct: 345 LYAELCKGIVDLAISSVFPLNEENHKPTEDNVFIKL 380
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 100.0
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.21
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.17
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.14
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.14
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.09
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.08
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 99.08
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.06
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.05
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.05
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.04
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 99.03
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 98.99
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 98.97
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.94
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 98.93
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 98.91
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 98.88
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 98.85
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 98.84
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 98.79
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 98.78
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 98.75
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.74
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 98.71
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.64
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 98.62
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.58
3ouz_A446 Biotin carboxylase; structural genomics, center fo 98.58
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 98.57
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 98.56
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 98.56
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 98.54
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 98.51
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 98.5
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 98.5
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 98.5
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 98.5
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 98.49
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 98.48
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 98.48
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 98.45
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 98.41
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 98.4
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 98.4
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 98.4
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 98.37
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 98.34
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 98.29
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 98.27
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 98.22
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 98.21
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 98.21
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 98.13
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 98.11
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 98.08
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 98.08
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 98.07
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 98.07
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 97.86
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 97.86
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 97.64
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 97.61
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 97.6
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 97.6
3n6x_A474 Putative glutathionylspermidine synthase; domain o 97.52
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 97.52
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 97.37
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 96.69
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 92.9
2vob_A652 Trypanothione synthetase; ligase; 2.3A {Leishmania 86.6
1wr2_A238 Hypothetical protein PH1789; structural genomics, 85.26
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-70  Score=547.98  Aligned_cols=303  Identities=27%  Similarity=0.476  Sum_probs=231.3

Q ss_pred             hHHHHHHhcCCC-cEEecCCCCceEEEecccCcch-HHHHhhcCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCC
Q psy16684         18 TVIEDVLRGRPG-WMPVGSDDTNWDIFWCDLATTK-LILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGN   95 (429)
Q Consensus        18 ~li~~~l~~r~g-w~e~~~~~~~~d~~W~~~~~~~-~~~~~~l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~   95 (429)
                      ++|+++|.++ | |.|+.+++.+||++|++..... ..+.....++|+||||||+++||||+.|+++|++++ .+.    
T Consensus        18 ~~V~~vL~~~-g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~----   91 (380)
T 3tig_A           18 AEVAKILLAS-GQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT----   91 (380)
T ss_dssp             HHHHHHHHHT-TSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH----
T ss_pred             HHHHHHHHhc-CCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcc----
Confidence            6799999999 6 9999876788999999865321 111111367899999999999999999999999953 332    


Q ss_pred             CcccccCCcccceeec-ch-----------------------hHHHHHHHHhc----CCCceEEEcCCCCCCCCCEEEec
Q psy16684         96 TEEAELSNAMPMTFEI-PS-----------------------ETALFLQEARR----DSHNMWIVKPSGGSQGRGILLFK  147 (429)
Q Consensus        96 ~~~~~~~~f~P~T~~L-p~-----------------------e~~~f~~~~~~----~~~~~wI~KP~~~s~G~GI~l~~  147 (429)
                          ..++|+|+||.| |.                       |+.+|+++|++    +++++||+||+++++|+||++++
T Consensus        92 ----~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~  167 (380)
T 3tig_A           92 ----ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISS  167 (380)
T ss_dssp             ----TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCS
T ss_pred             ----cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeC
Confidence                358999999999 75                       45689999974    46789999999999999999999


Q ss_pred             CchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcccc--CCceeeeEEEEEEeeecCCeEEEEcceEEEE
Q psy16684        148 KLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLL--EGRKFDMRMYVLVTSFSPLTVWIARDGFARI  225 (429)
Q Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi--~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~  225 (429)
                      +++++.++.+.                   ....+|||+||++|+||  +|||||||+||||||  ||++|+|++|++||
T Consensus       168 ~~~~i~~~~~~-------------------~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rf  226 (380)
T 3tig_A          168 DATELLDFIDN-------------------QGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRT  226 (380)
T ss_dssp             CSHHHHHHHHH-------------------HTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEE
T ss_pred             CHHHHHHHHhc-------------------cCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEe
Confidence            99999888742                   23579999999999999  999999999999999  99999999999999


Q ss_pred             cCcCCCCCCccCccccccccccccc-CCCc---CCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16684        226 AGIKYCKDNFADNCMHLTNTAIQLS-GENL---SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMM  301 (429)
Q Consensus       226 a~~~y~~~~~~~~~~HLTN~siqk~-~~~y---~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~  301 (429)
                      |+++|+.++++|.++||||+++||+ +++|   +.|++|++++|++||.+.++.+..+.|+++|++++++++.++++.+.
T Consensus       227 a~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~  306 (380)
T 3tig_A          227 SSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAIS  306 (380)
T ss_dssp             CC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999996 5667   57899999999999987667666679999999999999999998876


Q ss_pred             CC---CcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccC
Q psy16684        302 GN---KHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDL  357 (429)
Q Consensus       302 ~~---~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~  357 (429)
                      ..   .+|||+||+|||||++++|||||||++|+++.      .+.++|++++++++..
T Consensus       307 ~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavd  359 (380)
T 3tig_A          307 TKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAIS  359 (380)
T ss_dssp             CTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTT
T ss_pred             hcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcc
Confidence            53   58999999999999999999999999999975      3778899999998653
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.21
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.15
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.12
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 98.99
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 98.9
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.87
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 98.74
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 98.66
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 98.57
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 98.53
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 98.49
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 98.44
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 98.14
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 97.97
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 97.82
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 97.61
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 97.5
d2io8a3297 Glutathionylspermidine synthase, synthetase domain 90.53
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=3.9e-11  Score=108.68  Aligned_cols=152  Identities=14%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             CCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEE
Q psy16684        125 DSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMY  204 (429)
Q Consensus       125 ~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvy  204 (429)
                      ..+...|+||..|+.|+||+++++.+++.......                ......++||+||+.       ++|+|+.
T Consensus        48 ~~~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~~~----------------~~~~~~~~vqe~I~~-------~~dirv~  104 (206)
T d1i7na2          48 LPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVV----------------ALTQTYATAEPFIDA-------KYDIRVQ  104 (206)
T ss_dssp             CCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHH----------------HHHTCCEEEEECCCE-------EEEEEEE
T ss_pred             hcCCceEEecCCCCCCCCeEEEeecchhhhHHHHH----------------hhccCeEEEEEeecc-------cceEEEE
Confidence            34558999999999999999999998877655421                113457899999973       4799998


Q ss_pred             EEEeeecCCeEEEEcceEEEEcC-cCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHH
Q psy16684        205 VLVTSFSPLTVWIARDGFARIAG-IKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQ  283 (429)
Q Consensus       205 vLvts~~Pl~~y~y~~g~~R~a~-~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~  283 (429)
                      |+-..   ..      +..+.+. ..|           .+|.+         .|.....             ..    .+
T Consensus       105 vig~~---~~------~~~~~~~~~~~-----------~~n~~---------~~~~~~~-------------~~----~~  138 (206)
T d1i7na2         105 KIGNN---YK------AYMRTSISGNW-----------KTNTG---------SAMLEQI-------------AM----SD  138 (206)
T ss_dssp             EETTE---EE------EEEEESSCTTT-----------SCSCC---------CSSEEEE-------------CC----CH
T ss_pred             EEecc---ee------EEEeecccccc-----------ccccc---------cCccccc-------------cC----Ch
Confidence            87332   11      1122222 111           12221         1111110             00    01


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCC--ChhhHHHHHHHHHHHHh
Q psy16684        284 KIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKAT--DDHDYKLKYNLIQDALN  353 (429)
Q Consensus       284 ~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~--~~~d~~lk~~li~d~l~  353 (429)
                      ++++.+..+.    ..+    .+..+.|+||++|.+|+||+||||.+|.....  ...|......++.+.++
T Consensus       139 ~~~~~~~~~~----~~~----~~~~~~gvD~~~~~dG~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~  202 (206)
T d1i7na2         139 RYKLWVDACS----EMF----GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMN  202 (206)
T ss_dssp             HHHHHHHHHT----TGG----GCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----hhc----cccceeeEEEEEcCCCCEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            2222222211    122    36788999999999999999999998854332  23344444555544443
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure