Psyllid ID: psy16725

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MRPILPIEEVDTEEEFTEEEEGECFFSVQNLSWNEGGDTNAMFQNLESPISENSAGKVYSSKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEKKEKE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEccccccccccEEcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccEEccccccEEEEcccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccccccccEEEEEEEEEcccccccccccEEccccccEEEcccccEEEEccccccEEEcccccccHHHHHHHHHHHHHHHHHHHcc
cccccccEEEcccHHccHHccccEEEEEEEccccccccHHHHHHccccccccccccEEccccccccccccHHHHHccccccEEEEccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccccHHHEEEEEEEEEEEcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcHEEEEcccEEEEEEcccEEEEEEEcccccccEEEEEEEEEEEEccccccccEEEcccEEEEEEEcccccccccccEEEccEEEEEEEEEccEEEEEcccccccEEcccccccHHHHHHHHHHHHHHHHHHccc
mrpilpieevdteeefteeeegecffsvqnlswneggdtnamfqnlespisensagkvysskptssnnytLRRLVSKtgscrvsklnssqhlplftaASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWiiaskptssnnytLRRLVSKtgscrvsklnssqhlplftaASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAyhhgdlktspvrdpfndtlpcvtgvdDFITSFLFSMETqystgygsripnthcpeAIFLVSIQSIFGVLINALTGGIIFaklakpkkrsqnllfsdkavicqrdgEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMtregemiprykyklnitvddggssylpseiqwghrfmpmfikRDCKYYVDYARFQNTVLVnmplcsayqYEKLTRDALDLVEKKEKE
mrpilpieevdteeefteeeegECFFSVQNLSWNEGGDTNAMFQNLESPISensagkvysskptssnnytLRRLVSKTGSCRVSKlnssqhlplftaASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIaskptssnnytlRRLVSKTGSCRVSKlnssqhlplftaASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLakpkkrsqnllfsdkavicqrdGEYRLIwrigdlrkshligaKLRAWFLCRRMtregemiprykyKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEKKEKE
MRPILPIeevdteeefteeeegeCFFSVQNLSWNEGGDTNAMFQNLESPISENSAGKVYSSKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEKKEKE
*************************FSVQ*L*************************************************CRV**L**SQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALD********
***************************************************************************SKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAY*******************
MRPILPIEEVD************CFFSVQNLSWNEGGDTNAMFQNLESPISE**************NNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEKKEKE
*RPILPIEEVDTEEEFTEEEEGECFFSVQNLSWNEGGDTNAMFQNLESPISENS**************YTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG************NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEK****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRPILPIEEVDTEEEFTEEEEGECFFSVQNLSWNEGGDTNAMFQNLESPISENSAGKVYSSKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDALDLVEKKEKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
P48548419 G protein-activated inwar yes N/A 0.617 0.639 0.336 6e-52
P35561 428 Inward rectifier potassiu yes N/A 0.566 0.574 0.424 8e-52
P48545419 G protein-activated inwar no N/A 0.617 0.639 0.336 8e-52
P48544419 G protein-activated inwar yes N/A 0.617 0.639 0.333 2e-51
P52189445 Inward rectifier potassiu no N/A 0.619 0.604 0.356 3e-51
P48542425 G protein-activated inwar no N/A 0.624 0.637 0.346 3e-51
Q9MYY9 427 Inward rectifier potassiu no N/A 0.566 0.576 0.417 3e-51
O19182 427 Inward rectifier potassiu yes N/A 0.566 0.576 0.417 3e-51
P52185 427 Inward rectifier potassiu no N/A 0.566 0.576 0.417 4e-51
O18839 427 Inward rectifier potassiu yes N/A 0.566 0.576 0.417 4e-51
>sp|P48548|IRK5_RAT G protein-activated inward rectifier potassium channel 4 OS=Rattus norvegicus GN=Kcnj5 PE=1 SV=2 Back     alignment and function desciption
 Score =  205 bits (521), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 169/333 (50%), Gaps = 65/333 (19%)

Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
           +R + KTG C V   N  +    +   SD FT+L++ +WR+   +FT+ + +TWL F   
Sbjct: 51  QRYMEKTGKCNVHHGNVQE---TYRYLSDLFTTLVDLKWRFNLLVFTMVYTITWLFFGFI 107

Query: 208 WWIIAYHHGDLKTSPVRDPFNDT--LPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHC 265
           WW+IAY  GDL      D   D   +PCV  +  F+++FLFS+ET+ + GYG R+    C
Sbjct: 108 WWLIAYVRGDL------DHVGDQEWIPCVENLSGFVSAFLFSIETETTIGYGFRVITEKC 161

Query: 266 PEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRI 325
           PE I L+ +Q+I G ++NA   G +F K+++PKKR++ L+FS+ AVI  RD +  L++R+
Sbjct: 162 PEGIILLLVQAILGSIVNAFMVGCMFVKISQPKKRAETLMFSNNAVISMRDEKLCLMFRV 221

Query: 326 GDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI---TVDD--------------- 367
           GDLR SH++ A +RA  +  R T+EGE IP  +  +N+   T DD               
Sbjct: 222 GDLRNSHIVEASIRAKLIKSRQTKEGEFIPLNQTDINVGFDTGDDRLFLVSPLIISHEIN 281

Query: 368 ------------------------------------GGSSYLPSEIQWGHRFMPMFIKRD 391
                                                 SSY+ +E+ WGHRF P+     
Sbjct: 282 EKSPFWEMSRAQLEQEEFEVVVILEGMVEATGMTCQARSSYMDTEVLWGHRFTPVLTLEK 341

Query: 392 CKYYVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
             Y VDY  F +T   N P C A +  ++ R+ 
Sbjct: 342 GFYEVDYNTFHDTYETNTPSCCAKELAEMKRNG 374
This potassium channel is controlled by G proteins. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by external barium.
Rattus norvegicus (taxid: 10116)
>sp|P35561|IRK2_MOUSE Inward rectifier potassium channel 2 OS=Mus musculus GN=Kcnj2 PE=1 SV=1 Back     alignment and function description
>sp|P48545|IRK5_MOUSE G protein-activated inward rectifier potassium channel 4 OS=Mus musculus GN=Kcnj5 PE=2 SV=3 Back     alignment and function description
>sp|P48544|IRK5_HUMAN G protein-activated inward rectifier potassium channel 4 OS=Homo sapiens GN=KCNJ5 PE=1 SV=2 Back     alignment and function description
>sp|P52189|IRK4_MOUSE Inward rectifier potassium channel 4 OS=Mus musculus GN=Kcnj4 PE=1 SV=1 Back     alignment and function description
>sp|P48542|IRK6_MOUSE G protein-activated inward rectifier potassium channel 2 OS=Mus musculus GN=Kcnj6 PE=1 SV=1 Back     alignment and function description
>sp|Q9MYY9|IRK2_CANFA Inward rectifier potassium channel 2 OS=Canis familiaris GN=KCNJ2 PE=2 SV=1 Back     alignment and function description
>sp|O19182|IRK2_BOVIN Inward rectifier potassium channel 2 OS=Bos taurus GN=KCNJ2 PE=2 SV=1 Back     alignment and function description
>sp|P52185|IRK2_CAVPO Inward rectifier potassium channel 2 OS=Cavia porcellus GN=KCNJ2 PE=2 SV=1 Back     alignment and function description
>sp|O18839|IRK2_PIG Inward rectifier potassium channel 2 OS=Sus scrofa GN=KCNJ2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
242005815 557 inwardly rectifying k+ channel, putative 0.642 0.500 0.448 3e-68
350398250 687 PREDICTED: hypothetical protein LOC10074 0.624 0.394 0.401 2e-64
340724662 687 PREDICTED: hypothetical protein LOC10064 0.624 0.394 0.401 3e-64
321477187 557 hypothetical protein DAPPUDRAFT_311738 [ 0.624 0.486 0.402 2e-63
357628210 831 inwardly rectifying k+ channel [Danaus p 0.629 0.328 0.405 5e-63
240952132480 Inward rectifier K+ channel, putative [I 0.635 0.575 0.386 1e-62
340724991 833 PREDICTED: hypothetical protein LOC10064 0.615 0.320 0.412 1e-62
350398254 833 PREDICTED: hypothetical protein LOC10075 0.615 0.320 0.412 2e-62
427781919488 Putative inwardly rectifying k+ channel 0.629 0.559 0.384 7e-62
157120161372 inwardly rectifying k+ channel, putative 0.633 0.739 0.393 7e-62
>gi|242005815|ref|XP_002423756.1| inwardly rectifying k+ channel, putative [Pediculus humanus corporis] gi|212506958|gb|EEB11018.1| inwardly rectifying k+ channel, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 138/308 (44%), Positives = 188/308 (61%), Gaps = 29/308 (9%)

Query: 134 IIASKPTSSNNYTL-RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTI 192
           I  + P S+N  +   R V K G C V K  SS          D FT+L++ +WRW   +
Sbjct: 236 ISVTSPCSTNPESFFDRSVLKNGECNVLK-KSSNSKRRIRYLQDIFTTLVDVKWRWTLFV 294

Query: 193 FTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRDPFNDT--LPCVTGVDDFITSFLFSMET 250
           F LSF+L+WL +AV +W+IAY HGD       D  +D    PCV  + DF + FLFS+ET
Sbjct: 295 FALSFILSWLFYAVIYWLIAYAHGDF------DHLDDENWKPCVDNLFDFTSCFLFSVET 348

Query: 251 QYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKA 310
           Q++ GYG R  +  CPEAIF++ IQSI GV+I+A   GI FAK+++PK+R Q LLFS KA
Sbjct: 349 QHTIGYGGRATSEECPEAIFVMCIQSITGVMISAFLAGIFFAKMSRPKQRRQTLLFSRKA 408

Query: 311 VICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVD---- 366
           VICQRD +  L++R+GD+RKSH+IG  +RA     R TREGE +P+Y+ +L ++VD    
Sbjct: 409 VICQRDSQLCLMFRVGDMRKSHIIGTNIRAHIFRTRTTREGEELPQYQCELQVSVDGSIL 468

Query: 367 -----------DGGSSYLPSEIQWGHRFMPMF---IKRDCKYYVDYARFQNTVLVNMPLC 412
                         +SYLP+EI+WGHRF  +    + R C Y +DY +F NT  V  PLC
Sbjct: 469 EGTVESTGQTTQARTSYLPNEIKWGHRFEALLSYNLDRQC-YEIDYKKFNNTSKVATPLC 527

Query: 413 SAYQYEKL 420
           SA   ++L
Sbjct: 528 SAKDLDEL 535

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350398250|ref|XP_003485135.1| PREDICTED: hypothetical protein LOC100749745 isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340724662|ref|XP_003400700.1| PREDICTED: hypothetical protein LOC100647117 isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|321477187|gb|EFX88146.1| hypothetical protein DAPPUDRAFT_311738 [Daphnia pulex] Back     alignment and taxonomy information
>gi|357628210|gb|EHJ77605.1| inwardly rectifying k+ channel [Danaus plexippus] Back     alignment and taxonomy information
>gi|240952132|ref|XP_002399317.1| Inward rectifier K+ channel, putative [Ixodes scapularis] gi|215490523|gb|EEC00166.1| Inward rectifier K+ channel, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|340724991|ref|XP_003400859.1| PREDICTED: hypothetical protein LOC100646926 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350398254|ref|XP_003485137.1| PREDICTED: hypothetical protein LOC100750019 [Bombus impatiens] Back     alignment and taxonomy information
>gi|427781919|gb|JAA56411.1| Putative inwardly rectifying k+ channel inwardly rectifying k+ channel [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|157120161|ref|XP_001653530.1| inwardly rectifying k+ channel, putative [Aedes aegypti] gi|108875032|gb|EAT39257.1| AAEL008928-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
FB|FBgn0039081453 Irk2 "Inwardly rectifying pota 0.509 0.487 0.457 2.9e-64
FB|FBgn0265042 555 Irk1 "Inwardly rectifying pota 0.518 0.405 0.437 6.1e-62
ZFIN|ZDB-GENE-091118-79421 si:ch211-23l10.2 "si:ch211-23l 0.490 0.505 0.440 2.3e-58
ZFIN|ZDB-GENE-100922-48 484 kcnj14 "potassium inwardly-rec 0.315 0.283 0.481 2.5e-58
ZFIN|ZDB-GENE-091204-290 440 si:ch211-8c17.5 "si:ch211-8c17 0.490 0.484 0.439 1.3e-57
UNIPROTKB|F1NHE9 429 KCNJ12 "Uncharacterized protei 0.495 0.501 0.436 8.8e-57
UNIPROTKB|A2VDS5 427 KCNJ12 "Potassium inwardly-rec 0.493 0.501 0.431 2.6e-55
UNIPROTKB|Q4TZY1 427 KCNJ12 "ATP-sensitive inward r 0.493 0.501 0.431 2.6e-55
UNIPROTKB|F1PLH7 428 KCNJ12 "Uncharacterized protei 0.493 0.5 0.431 2.6e-55
UNIPROTKB|F6KIF6 440 KCNJ12 "Uncharacterized protei 0.493 0.486 0.431 2.6e-55
FB|FBgn0039081 Irk2 "Inwardly rectifying potassium channel 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 545 (196.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 103/225 (45%), Positives = 148/225 (65%)

Query:   148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
             RR V K G C V + +  +    F    D +T++++ +WRW    F LSF+L+WL FA+ 
Sbjct:    97 RRAVFKNGDCNVVQKHLQRRRVRFL--QDMYTTMVDWQWRWTLLAFALSFILSWLFFALI 154

Query:   208 WWIIAYHHGDLKTS--PVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHC 265
             WW+I Y HGDL+    P     +   PCV+ +D F + FLFS+ETQ++ GYG R  +  C
Sbjct:   155 WWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQHTIGYGVRTTSPEC 214

Query:   266 PEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRI 325
             PEAIF++  QSI+GV+ +A   GI+FAK+ + K+R+Q LLFS  AVICQRDG   L++R+
Sbjct:   215 PEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRAQTLLFSKHAVICQRDGTLSLMFRV 274

Query:   326 GDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGGS 370
             GD+RKSH+IGA +RA  +  + T+EGE++ +Y  +L I  DD GS
Sbjct:   275 GDMRKSHIIGAGVRAQLIRTKSTKEGEVMTQYFTELEIGTDDSGS 319
GO:0015467 "G-protein activated inward rectifier potassium channel activity" evidence=ISS
GO:0005242 "inward rectifier potassium channel activity" evidence=IDA;NAS
GO:0006813 "potassium ion transport" evidence=IDA
GO:0042391 "regulation of membrane potential" evidence=IDA
GO:0016021 "integral to membrane" evidence=IDA
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI
GO:0035220 "wing disc development" evidence=IMP
FB|FBgn0265042 Irk1 "Inwardly rectifying potassium channel" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091118-79 si:ch211-23l10.2 "si:ch211-23l10.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100922-48 kcnj14 "potassium inwardly-rectifying channel, subfamily J, member 14" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-290 si:ch211-8c17.5 "si:ch211-8c17.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHE9 KCNJ12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDS5 KCNJ12 "Potassium inwardly-rectifying channel, subfamily J, member 12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q4TZY1 KCNJ12 "ATP-sensitive inward rectifier potassium channel 12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLH7 KCNJ12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6KIF6 KCNJ12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48548IRK5_RATNo assigned EC number0.33630.61750.6396yesN/A
Q5NVJ6IRK6_PONABNo assigned EC number0.34630.62440.6406yesN/A
P48544IRK5_HUMANNo assigned EC number0.33330.61750.6396yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 2e-91
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 1e-12
pfam0674997 pfam06749, DUF1218, Protein of unknown function (D 0.004
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information 
 Score =  279 bits (716), Expect = 2e-91
 Identities = 128/322 (39%), Positives = 171/322 (53%), Gaps = 60/322 (18%)

Query: 151 VSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWI 210
           VSK G C V   N       +    D FT+L++ +WR++  IF+L+F+L+WL F   WW+
Sbjct: 1   VSKDGRCNVYFKNVRGERGRYL--QDIFTTLVDLKWRYMLLIFSLAFLLSWLFFGTIWWL 58

Query: 211 IAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIF 270
           IA+ HGDL+ +P  +      PCV  V  F ++FLFS+ETQ + GYG R     CP AIF
Sbjct: 59  IAFAHGDLEPAPDANH----TPCVMNVHSFTSAFLFSIETQTTIGYGFRCITEECPLAIF 114

Query: 271 LVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRK 330
           L+ +QSI G +INA   G IFAK+A+PKKR++ L+FS  AVI  RDG+  L++R+GDLRK
Sbjct: 115 LLILQSILGCIINAFMIGCIFAKMARPKKRAETLIFSHHAVIALRDGKLCLMFRVGDLRK 174

Query: 331 SHLIGAKLRAWFLCRRMTREGEMI----------------------------------PR 356
           SHL+ A +RA  L  R+T EGE I                                  P 
Sbjct: 175 SHLVEAHVRAQLLKSRVTPEGEFIPLHQIDIKVGFDTGSDRIFLVSPLTICHVIDERSPL 234

Query: 357 YKYK--------------LNITVDDGG------SSYLPSEIQWGHRFMPMFIKRDCKYYV 396
           Y                 L  TV+  G      +SYLP EI WGHRF P+    + KY V
Sbjct: 235 YDLSAQDLKSADFEIVVILEGTVESTGMTCQARTSYLPEEILWGHRFEPVVSLENGKYKV 294

Query: 397 DYARFQNTVLVNMPLCSAYQYE 418
           DY++F  T  V  P CSA + +
Sbjct: 295 DYSQFHKTYEVPTPDCSARELD 316

Length = 336
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information
>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
KOG3827|consensus400 100.0
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 100.0
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 99.69
KOG3827|consensus400 99.54
KOG3713|consensus477 99.2
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.04
KOG1545|consensus507 98.92
PRK10537393 voltage-gated potassium channel; Provisional 98.61
KOG4390|consensus632 98.55
KOG1419|consensus 654 98.45
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.35
KOG0498|consensus 727 98.14
KOG1418|consensus 433 97.44
KOG1420|consensus 1103 97.17
KOG4404|consensus350 96.86
KOG4404|consensus350 96.77
KOG1418|consensus433 96.69
KOG3684|consensus489 96.69
KOG0501|consensus 971 96.58
KOG0500|consensus 536 96.41
PF00520200 Ion_trans: Ion transport protein calcium channel s 95.56
KOG3193|consensus 1087 95.46
KOG0499|consensus 815 94.9
PF07077180 DUF1345: Protein of unknown function (DUF1345); In 94.41
>KOG3827|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-99  Score=759.79  Aligned_cols=274  Identities=49%  Similarity=0.887  Sum_probs=256.8

Q ss_pred             ccccccccccccCCccceeecCCCCcccchhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q psy16725         66 SNNYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIASKPTSSNNY  145 (434)
Q Consensus        66 ~~~~~~~R~v~K~G~cnv~~~~~~~~~~~~ryl~D~fttlvd~~Wr~~l~~F~~~~~~sW~~F~~~~~~ia~~~~~~~~~  145 (434)
                      .++|+|+|+|+|||+|||+++|++++..  |||+||||||||+||||||++|++||++||||||++||+|||.||     
T Consensus        20 ~r~r~r~R~v~K~G~cNV~~~nv~~~~~--rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hG-----   92 (400)
T KOG3827|consen   20 RRVRKRRRFVKKDGHCNVQFKNVPRKRL--RYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHG-----   92 (400)
T ss_pred             hhhhhhhhhcccCCceeEEEcCchHHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----
Confidence            3346789999999999999999987543  699999999999999999999999999999999999999999886     


Q ss_pred             ccceEEeeCCCcceeecCCCCCcchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy16725        146 TLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPVRD  225 (434)
Q Consensus       146 ~~~Rlv~K~G~~nV~~~~v~~~~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~~~  225 (434)
                                                                                             ||...+   
T Consensus        93 -----------------------------------------------------------------------DL~~~~---   98 (400)
T KOG3827|consen   93 -----------------------------------------------------------------------DLEPDP---   98 (400)
T ss_pred             -----------------------------------------------------------------------CcccCC---
Confidence                                                                                   111110   


Q ss_pred             CCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccee
Q psy16725        226 PFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLL  305 (434)
Q Consensus       226 ~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~Ra~tI~  305 (434)
                      |..+++||+.++++|+.||+||+|||||||||.++++++||.|++++++|+++|++++|+++|++|||++||+|||+||+
T Consensus        99 ~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeTl~  178 (400)
T KOG3827|consen   99 PGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAETLI  178 (400)
T ss_pred             CCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhheee
Confidence            11578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC-----------------
Q psy16725        306 FSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG-----------------  368 (434)
Q Consensus       306 FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~-----------------  368 (434)
                      ||++||||.|||++||||||||+||||||+|+||++|++.++|+|||.+|++|.++++++|.|                 
T Consensus       179 FS~~AVI~~RDGkLCLmfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~ID  258 (400)
T KOG3827|consen  179 FSDHAVIALRDGKLCLMFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVID  258 (400)
T ss_pred             eccceEEEeeCCceEEEEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcC
Confidence            999999999999999999999999999999999999999999999999999999999987764                 


Q ss_pred             -------------------------------------ceeecCCCcccCCeecccEEec-CCeEEEeccCCCceeeecCC
Q psy16725        369 -------------------------------------GSSYLPSEIQWGHRFMPMFIKR-DCKYYVDYARFQNTVLVNMP  410 (434)
Q Consensus       369 -------------------------------------RtSY~~~EI~WghrF~~~i~~~-~g~~~VD~s~F~~t~~v~~P  410 (434)
                                                           ||||+|+||+|||||+|+++.+ +|+|.|||++||+|++|+||
T Consensus       259 e~SPLy~l~~~~l~~~~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWGhRF~pvv~~~~~g~Y~VDy~~F~~T~~V~tP  338 (400)
T KOG3827|consen  259 ETSPLYDLSRQDLAKADFEIVVILEGTVEATGMTTQARTSYLPSEILWGHRFVPVVTLEKNGKYEVDYSNFHKTYEVPTP  338 (400)
T ss_pred             CCCchhhhChhhhhhcceEEEEEEEeEEecccceeecccccchHHhhhccccceeeEeccCCcEEEEhHHcCceeeccCC
Confidence                                                 9999999999999999999997 79999999999999999999


Q ss_pred             CCChHhHHHH
Q psy16725        411 LCSAYQYEKL  420 (434)
Q Consensus       411 ~~sa~~l~~~  420 (434)
                      .|||++++|.
T Consensus       339 ~csa~~l~E~  348 (400)
T KOG3827|consen  339 LCSAKELDEL  348 (400)
T ss_pred             CcChhhhhhh
Confidence            9999999983

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
3sya_A340 Crystal Structure Of The G Protein-Gated Inward Rec 5e-52
3sph_A343 Inward Rectifier Potassium Channel Kir2.2 I223l Mut 1e-51
3sph_A343 Inward Rectifier Potassium Channel Kir2.2 I223l Mut 3e-06
3syc_A340 Crystal Structure Of The G Protein-Gated Inward Rec 2e-51
3jyc_A343 Crystal Structure Of The Eukaryotic Strong Inward-R 2e-51
3jyc_A343 Crystal Structure Of The Eukaryotic Strong Inward-R 4e-06
3syp_A340 Crystal Structure Of The G Protein-Gated Inward Rec 2e-51
3spg_A343 Inward Rectifier Potassium Channel Kir2.2 R186a Mut 4e-51
3spg_A343 Inward Rectifier Potassium Channel Kir2.2 R186a Mut 3e-06
2qks_A321 Crystal Structure Of A Kir3.1-Prokaryotic Kir Chann 3e-27
3auw_B182 Cytoplasmic Domain Of Inward Rectifier Potassium Ch 3e-16
2e4f_A208 Crystal Structure Of The Cytoplasmic Domain Of G-Pr 6e-16
3agw_A208 Crystal Structure Of The Cytoplasmic Domain Of G-Pr 6e-16
1u4f_A 270 Crystal Structure Of Cytoplasmic Domains Of Irk1 (K 4e-14
1u4f_A270 Crystal Structure Of Cytoplasmic Domains Of Irk1 (K 2e-07
2gix_A208 Cytoplasmic Domain Structure Of Kir2.1 Containing A 1e-13
2xky_I 309 Single Particle Analysis Of Kir2.1nc_4 In Negative 2e-13
2xky_I309 Single Particle Analysis Of Kir2.1nc_4 In Negative 2e-07
1u4e_A212 Crystal Structure Of Cytoplasmic Domains Of Girk1 C 1e-11
3k6n_A207 Crystal Structure Of The S225e Mutant Kir3.1 Cytopl 4e-11
2wln_A301 Potassium Channel From Magnetospirillum Magnetotact 5e-11
1xl4_A301 Intermediate Gating Structure 1 Of The Inwardly Rec 5e-11
2wli_A301 Potassium Channel From Magnetospirillum Magnetotact 5e-11
3zrs_A301 X-Ray Crystal Structure Of A Kirbac Potassium Chann 8e-11
2x6b_A301 Potassium Channel From Magnetospirillum Magnetotact 8e-11
2x6a_A301 Potassium Channel From Magnetospirillum Magnetotact 8e-11
1n9p_A207 Crystal Structure Of The Cytoplasmic Domain Of G-pr 4e-10
2wll_A333 Potassium Channel From Burkholderia Pseudomallei Le 7e-09
1p7b_A333 Crystal Structure Of An Inward Rectifier Potassium 3e-08
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) In Complex With Sodium And Pip2 Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  201 bits (512), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 168/332 (50%), Gaps = 61/332 (18%)
Query: 147 LRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAV 206
           ++R V K G C V   N  +     T   D FT+L++ +WR+   IF + + +TWL F +
Sbjct: 6   IQRYVRKDGKCNVHHGNVRETYRYLT---DIFTTLVDLKWRFNLLIFVMVYTVTWLFFGM 62
Query: 207 GWWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCP 266
            WW+IAY  GD+    + DP     PCVT ++ F+++FLFS+ET+ + GYG R+    CP
Sbjct: 63  IWWLIAYIRGDM--DHIEDP--SWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCP 118
Query: 267 EAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIG 326
           E I L+ IQS+ G ++NA   G +F K+++PKKR++ L+FS  AVI  RDG+  L++R+G
Sbjct: 119 EGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVG 178
Query: 327 DLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNI---TVDD---------------- 367
           DLR SH++ A +RA  +  + T EGE IP  +  +N+   T DD                
Sbjct: 179 DLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQ 238
Query: 368 -----------------------------------GGSSYLPSEIQWGHRFMPMFIKRDC 392
                                                SSY+ SEI WG+RF P+    D 
Sbjct: 239 QSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDG 298
Query: 393 KYYVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
            Y VDY  F  T   + P  SA +  +L   A
Sbjct: 299 FYEVDYNSFHETYETSTPSLSAKELAELANRA 330
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) D228n Mutant Length = 340 Back     alignment and structure
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom Resolution Length = 343 Back     alignment and structure
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom Resolution Length = 343 Back     alignment and structure
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) R201a Mutant Length = 340 Back     alignment and structure
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel Chimera Length = 321 Back     alignment and structure
>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel Kir3.2 In Complex With Cadmium Length = 182 Back     alignment and structure
>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 Length = 208 Back     alignment and structure
>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 In The Absence Of Na+ Length = 208 Back     alignment and structure
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1) Channel Length = 270 Back     alignment and structure
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1) Channel Length = 270 Back     alignment and structure
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's Mutation R218q And Rescue Mutation T309k Length = 208 Back     alignment and structure
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain Length = 309 Back     alignment and structure
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain Length = 309 Back     alignment and structure
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel Length = 212 Back     alignment and structure
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic Pore Domain Length = 207 Back     alignment and structure
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying K+ Channel Kirbac3.1 Length = 301 Back     alignment and structure
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel Highlights A Mechanism Of Channel Opening At The Bundle-Crossing Gate Length = 301 Back     alignment and structure
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein Activated Inward Rectifier Potassium Channel 1 Length = 207 Back     alignment and structure
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei Length = 333 Back     alignment and structure
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel Length = 333 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
3sya_A340 G protein-activated inward rectifier potassium CH; 2e-65
3sya_A340 G protein-activated inward rectifier potassium CH; 5e-11
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 1e-62
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 1e-10
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 1e-10
1p7b_A333 Integral membrane channel and cytosolic domains; t 4e-54
1p7b_A333 Integral membrane channel and cytosolic domains; t 2e-07
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 1e-53
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 7e-11
1xl4_A301 Inward rectifier potassium channel; integral membr 8e-44
1xl4_A301 Inward rectifier potassium channel; integral membr 2e-11
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 1e-34
2xky_I309 Inward rectifier potassium channel 2; ION channel, 3e-29
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 5e-27
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 2e-25
1u4f_A 270 Inward rectifier potassium channel 2; cytoplasmic 1e-23
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 1e-11
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
 Score =  211 bits (539), Expect = 2e-65
 Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 61/331 (18%)

Query: 148 RRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVG 207
           +R V K G C V   N  +        +D FT+L++ +WR+   IF + + +TWL F + 
Sbjct: 7   QRYVRKDGKCNVHHGNVRETYRYL---TDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMI 63

Query: 208 WWIIAYHHGDLKTSPVRDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPE 267
           WW+IAY  GD+             PCVT ++ F+++FLFS+ET+ + GYG R+    CPE
Sbjct: 64  WWLIAYIRGDM----DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPE 119

Query: 268 AIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGD 327
            I L+ IQS+ G ++NA   G +F K+++PKKR++ L+FS  AVI  RDG+  L++R+GD
Sbjct: 120 GIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRVGD 179

Query: 328 LRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDGG-----------------S 370
           LR SH++ A +RA  +  + T EGE IP  +  +N+    G                   
Sbjct: 180 LRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQ 239

Query: 371 SYLPSEIQWG--------------------------HRFMPMFIKRDCKY---------- 394
           S      +                              ++   I    ++          
Sbjct: 240 SPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDGF 299

Query: 395 -YVDYARFQNTVLVNMPLCSAYQYEKLTRDA 424
             VDY  F  T   + P  SA +  +L   A
Sbjct: 300 YEVDYNSFHETYETSTPSLSAKELAELANRA 330
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Length = 208 Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Length = 309 Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Length = 208 Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Length = 207 Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Length = 270 Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Length = 270 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
3sya_A340 G protein-activated inward rectifier potassium CH; 100.0
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 100.0
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 100.0
1xl4_A301 Inward rectifier potassium channel; integral membr 100.0
1p7b_A333 Integral membrane channel and cytosolic domains; t 100.0
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 100.0
2xky_I309 Inward rectifier potassium channel 2; ION channel, 100.0
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 100.0
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 100.0
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 100.0
3sya_A340 G protein-activated inward rectifier potassium CH; 99.77
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 99.77
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.42
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.36
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.33
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.28
1xl4_A301 Inward rectifier potassium channel; integral membr 99.23
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.2
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.17
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.14
2q67_A114 Potassium channel protein; inverted teepee, helix 99.04
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.03
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.03
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.98
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 98.96
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 98.92
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.8
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.8
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.7
1lnq_A336 MTHK channels, potassium channel related protein; 98.42
3um7_A309 Potassium channel subfamily K member 4; potassium 98.35
3um7_A309 Potassium channel subfamily K member 4; potassium 98.29
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.28
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.24
3rvy_A285 ION transport protein; tetrameric ION channel, vol 97.77
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 91.55
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 90.62
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 88.76
2xky_I309 Inward rectifier potassium channel 2; ION channel, 83.23
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-79  Score=616.31  Aligned_cols=274  Identities=40%  Similarity=0.756  Sum_probs=254.7

Q ss_pred             ccccceEEeeCCCcceeecCCCCCcchhccHHHHHHHHhHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy16725        144 NYTLRRLVSKTGSCRVSKLNSSQHLPLFTAASDTFTSLIECRWRWVWTIFTLSFVLTWLLFAVGWWIIAYHHGDLKTSPV  223 (434)
Q Consensus       144 ~~~~~Rlv~K~G~~nV~~~~v~~~~~~~~yl~Dlf~tlv~l~W~~~llif~~~yll~~llFA~lY~~i~~~~Gdl~~~~~  223 (434)
                      |++++|+|+|||+|||++.|++.+.+   |++|+||++++++|++++++++++|+++|++||++||++++.+||+...+ 
T Consensus         3 ~~~~~R~v~k~G~~nv~~~~~~~~~~---~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~-   78 (340)
T 3sya_A            3 KRKIQRYVRKDGKCNVHHGNVRETYR---YLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIE-   78 (340)
T ss_dssp             ---CCCSBCTTSCBCCCCCCCCCTHH---HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSS-
T ss_pred             CcccceEEecCCcEEEEEcCcccchH---HHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-
Confidence            56677999999999999998876666   99999999999999999999999999999999999999999899986321 


Q ss_pred             CCCCCCCCCcccCcccchheeeeeeEeeeecCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccc
Q psy16725        224 RDPFNDTLPCVTGVDDFITSFLFSMETQYSTGYGSRIPNTHCPEAIFLVSIQSIFGVLINALTGGIIFAKLAKPKKRSQN  303 (434)
Q Consensus       224 ~~~~~~~~pCi~~~~~f~~AF~FSveT~TTIGYGdi~Pt~~Cp~a~~l~~vq~lvGvll~A~~~GlIfaK~SRP~~Ra~t  303 (434)
                         ..+++||+.++.+|.+|||||++|+|||||||++|+++||.|++++++|+++|++++|+++|++|+|++||++|++|
T Consensus        79 ---~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra~t  155 (340)
T 3sya_A           79 ---DPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAET  155 (340)
T ss_dssp             ---CSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGG
T ss_pred             ---cccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCce
Confidence               24789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeeeecCC---------------
Q psy16725        304 LLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNITVDDG---------------  368 (434)
Q Consensus       304 I~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~~d~~---------------  368 (434)
                      |+||++|||+++||++|||||+||+|+++|+||+||+++++.++|+|||.+|++|.+++++.|.+               
T Consensus       156 i~FS~~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~  235 (340)
T 3sya_A          156 LVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHE  235 (340)
T ss_dssp             EEECSCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEE
T ss_pred             EEecceEEEeccCCeEEEEEEEecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999988876532211               


Q ss_pred             ---------------------------------------ceeecCCCcccCCeecccEEecCCeEEEeccCCCceeeecC
Q psy16725        369 ---------------------------------------GSSYLPSEIQWGHRFMPMFIKRDCKYYVDYARFQNTVLVNM  409 (434)
Q Consensus       369 ---------------------------------------RtSY~~~EI~WghrF~~~i~~~~g~~~VD~s~F~~t~~v~~  409 (434)
                                                             ||||+++||+|||||+||++.++|+|.|||++||+++|++|
T Consensus       236 Ide~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~~~~g~~~vD~s~F~~~~~v~~  315 (340)
T 3sya_A          236 INQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLEDGFYEVDYNSFHETYETST  315 (340)
T ss_dssp             CCTTSTTTTCCTTTGGGCCCEEEEEEEEEESSSCCEEEEEEEEEGGGEEETEEECCCEEEETTEEEECGGGSSCEEECCC
T ss_pred             CCCCCCccccChhHHhhCCeEEEEEEEEEeccccceEEEEEEEcHHHEecCCEeceeEEcCCCeEEEEhHHcCcceEcCC
Confidence                                                   99999999999999999999888999999999999999999


Q ss_pred             CCCChHhHHHHhhhH
Q psy16725        410 PLCSAYQYEKLTRDA  424 (434)
Q Consensus       410 P~~sa~~l~~~~~~~  424 (434)
                      |.|||+|++|.+++.
T Consensus       316 p~csa~~~~~~~~~~  330 (340)
T 3sya_A          316 PSLSAKELAELANRA  330 (340)
T ss_dssp             CCSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhc
Confidence            999999999988643
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1n9pa_202 b.1.18.16 (A:) G protein-gated inward rectifier Gi 3e-25
d1p7ba1158 b.1.18.16 (A:152-309) Inward rectifier potassium c 2e-23
d1xl4a1161 b.1.18.16 (A:139-299) Inward rectifier potassium c 4e-17
d1xl4a1161 b.1.18.16 (A:139-299) Inward rectifier potassium c 1e-08
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 4e-14
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 0.003
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 1e-13
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 0.002
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 202 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =   99 bits (249), Expect = 3e-25
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 56/188 (29%)

Query: 289 IIFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMT 348
           +    L    +R++ L+FS+ AVI  RDG+  L++R+G+LR SH++ A++R   L  R T
Sbjct: 13  VQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQT 70

Query: 349 REGEMIPRYKYKLNITVDDGGS-SYLPSEIQWGHRF---MPMF----------------- 387
            EGE +P  + +L++    G    +L S +   H      P +                 
Sbjct: 71  PEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVI 130

Query: 388 ----------------------IKRDCKY-----------YVDYARFQNTVLVNMPLCSA 414
                                 +    ++            VDY++F  T  V  P  S 
Sbjct: 131 LEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEVPTPPYSV 190

Query: 415 YQYEKLTR 422
            + E++  
Sbjct: 191 KEQEEMLL 198
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 158 Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 161 Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 161 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1n9pa_202 G protein-gated inward rectifier Girk1 {Mouse (Mus 100.0
d1xl4a1161 Inward rectifier potassium channel kirbac3.1 {Magn 99.96
d1p7ba1158 Inward rectifier potassium channel Kirbac1.1 {Burk 99.96
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.86
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.86
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.36
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.44
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.82
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 97.74
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 97.5
d1n9pa_202 G protein-gated inward rectifier Girk1 {Mouse (Mus 93.18
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-38  Score=294.79  Aligned_cols=130  Identities=35%  Similarity=0.667  Sum_probs=113.5

Q ss_pred             HHHHhhCccccccceeeecceEEeeeCCeEEEEEEEeecccceEeeeEEEEEEEEeEEcCCCceeeeeeeeeeee-----
Q psy16725        290 IFAKLAKPKKRSQNLLFSDKAVICQRDGEYRLIWRIGDLRKSHLIGAKLRAWFLCRRMTREGEMIPRYKYKLNIT-----  364 (434)
Q Consensus       290 IfaK~SRP~~Ra~tI~FSk~AVI~~rdG~~~LmfRv~n~R~s~Liea~Vr~~li~~~~t~eGe~lpl~~~~l~~~-----  364 (434)
                      .|++++  ++||+||+||++|||+++||++||||||||+|+++|+||+||++|++.+.|.|||.+++++.++++.     
T Consensus        14 ~~~r~~--~kRa~tI~FS~~AVI~~~dG~~~LmfRvan~R~~~liea~vr~~L~~~~~t~EGe~~~~~~~~l~l~~~~~~   91 (202)
T d1n9pa_          14 QHGNLG--SERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGA   91 (202)
T ss_dssp             EC-------CCSCCSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTTTTT
T ss_pred             EEeecC--CCCcceEEEcccEEEEEECCEEEEEEEEecCcCCeEEeEEEEEEEEEeeecCCCceEEEEEEEeeccccCCC
Confidence            467776  6677799999999999999999999999999999999999999999999999999988777655321     


Q ss_pred             ------------------------------------------ecCC-------ceeecCCCcccCCeecccEEecCCeEE
Q psy16725        365 ------------------------------------------VDDG-------GSSYLPSEIQWGHRFMPMFIKRDCKYY  395 (434)
Q Consensus       365 ------------------------------------------~d~~-------RtSY~~~EI~WghrF~~~i~~~~g~~~  395 (434)
                                                                .|++       |+||+++||+|||||+||++.++|+|.
T Consensus        92 ~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~ElvV~l~G~de~t~~~v~aR~sY~~~eI~wg~rF~div~~~~g~~~  171 (202)
T d1n9pa_          92 DQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFK  171 (202)
T ss_dssp             TEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEESSSCEE
T ss_pred             CccEEcccEEEEEECCCCCCCcccchhhhhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEeeCCEEeeeEEecCCEEE
Confidence                                                      1111       999999999999999999999889999


Q ss_pred             EeccCCCceeeecCCCCChHhHHHHh
Q psy16725        396 VDYARFQNTVLVNMPLCSAYQYEKLT  421 (434)
Q Consensus       396 VD~s~F~~t~~v~~P~~sa~~l~~~~  421 (434)
                      |||++||+|+|+++|.|||+|++|..
T Consensus       172 VD~s~F~~t~pv~~P~~sa~~~~~~~  197 (202)
T d1n9pa_         172 VDYSQFHATFEVPTPPYSVKEQEEML  197 (202)
T ss_dssp             ECGGGSSCEEECCCCCSCHHHHHHHH
T ss_pred             EEHHHCCcceECCCCCcCHHHHHHHh
Confidence            99999999999999999999999985
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure