Psyllid ID: psy16729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAGNASLPSNGTAFTAR
Secondary Structure (PSIPRED)
cccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEcccHccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHcHHHHHHHHEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcEEEEcccccccccccEEEcc
Coil and Loop (DISEMBL)
manghlpdsqvmplennmqtpnhFVGLCGVLNQGMGGVTMIYILLGFLGYlkygeltednitynlpqheiapqIANIAIGIAVFCTFGLQFFVCLEIVWNgvkdnfvkkpkfYEYIVRTVIVTAAVGLAvavptigpfLGLIGAFCFSLLGLIFPVLIEFVtywdvgfgpgnwRVWKNILVLIFGVLALVFgtqtsigdimraymppdsdlpvaIINGtlglagnaslpsngtaftar
Flexible Loop (DISEMBL)
manghlpdSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLglagnaslpsngtaftar
Low Complexity Region (SEG)
MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAGNASLPSNGTAFTAR
Disordered region (IsUnstruct)
*********************NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAG**************
Disordered Region (DISOPRED)
**NGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRA***********************SLPSNGTAF***
Disordered Region (DISEMBL)
MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAGNASLPSNGTAFTAR
Disordered Region (DISPRO)
****HLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAGNASLPSN*T*FT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAGNASLPSNGTAFTAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.861	0.392	0.308	8e-22
Q8K4D3	475	Proton-coupled amino acid	yes	N/A	0.789	0.395	0.343	4e-20
Q6YBV0	504	Proton-coupled amino acid	yes	N/A	0.781	0.369	0.322	8e-20
Q924A5	475	Proton-coupled amino acid	yes	N/A	0.789	0.395	0.338	1e-19
Q8CH36	500	Proton-coupled amino acid	no	N/A	0.878	0.418	0.307	4e-19
Q7Z2H8	476	Proton-coupled amino acid	no	N/A	0.789	0.394	0.333	1e-18
Q495M3	483	Proton-coupled amino acid	no	N/A	0.785	0.387	0.293	8e-18
Q495N2	470	Proton-coupled amino acid	no	N/A	0.773	0.391	0.324	3e-17
Q811P0	477	Proton-coupled amino acid	no	N/A	0.768	0.383	0.321	6e-17
Q4V8B1	477	Proton-coupled amino acid	no	N/A	0.802	0.400	0.313	1e-16

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 9/214 (4%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+    F      LN GM  VT +YI L  LGY  +G+  + +IT NLPQ   
Sbjct: 310 VLPLENRMRDKKDF---SKALNIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSW 366

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFY-EYIVRTVIVTAAVGLA 129
             Q+  I     ++ T+ +Q++V  EI+   V     K  K   E+ +R  +V     +A
Sbjct: 367 LYQLVKILYSFGIYVTYAIQYYVPAEIILPAVTSRVQKTRKLLCEFTMRFFLVCLTCAVA 426

Query: 130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
           V +P +   +  +GA   S L LI P L+E +TY      P  W + K++ + + G +  
Sbjct: 427 VLIPRLDLVISFVGAVSSSTLALILPPLVEIITYHKENLSP--WVIMKDVGIAVIGFVGF 484

Query: 190 VFGTQTSIGDIMR--AYMPPD-SDLPVAIINGTL 220
           + GT  +I +++   +Y+PP+ S     ++N T+
Sbjct: 485 IAGTYVTIEEMIYPISYVPPNVSHSDFGVLNNTV 518

Xenopus laevis (taxid: 8355)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 16/204 (7%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+    F     +L  GM  +T++YI LG LGYL++G   + +IT NLP   +
Sbjct: 274 VLPLENKMKDSQKFPL---ILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWL 330

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIV----RTVIVTAAV 126
             Q   +   I +F T+ LQF+V  EI+   +     + P+ +E +V    RT +V    
Sbjct: 331 Y-QSVKLLYSIGIFFTYALQFYVAAEIIIPAIVS---RVPEHFELMVDLCVRTAMVCVTC 386

Query: 127 GLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGV 186
            LA+ +P +   + L+G+   S L LI P L+E VTY+  G  P    V K+ L+ I G 
Sbjct: 387 VLAILIPRLDLVISLVGSVSSSALALIIPPLLEVVTYYGEGISP--LTVTKDALISILGF 444

Query: 187 LALVFGTQTSIGDIMRAYMPPDSD 210
           +  V GT  S+ ++++   P  SD
Sbjct: 445 VGFVVGTYESLCELIQ---PSHSD 465

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 6/192 (3%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+    F      LN GMG VT +Y+ L  LGY+ + +  + +IT NLPQ   
Sbjct: 290 VLPLENQMKESKRFPQ---ALNIGMGIVTTLYVTLATLGYMCFHDEIKGSITLNLPQDVW 346

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKK-PKFYEYIVRTVIVTAAVGLA 129
             Q   I     +F T+ +QF+V  EI+  G+   F  K  +  E+ +R+ +V+     A
Sbjct: 347 LYQSVKILYSFGIFVTYSIQFYVPAEIIIPGITSKFHTKWKQICEFGIRSFLVSITCAGA 406

Query: 130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
           + +P +   +  +GA   S L LI P L+E +T+    +    W V KNI +   GV+  
Sbjct: 407 ILIPRLDIVISFVGAVSSSTLALILPPLVEILTFSKEHYNI--WMVLKNISIAFTGVVGF 464

Query: 190 VFGTQTSIGDIM 201
           + GT  ++ +I+
Sbjct: 465 LLGTYITVEEII 476

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 16/204 (7%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+    F     +L  GM  +T++YI LG LGYL++G   + +IT NLP   +
Sbjct: 274 VLPLENKMKDSQKFPL---ILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPNCWL 330

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIV----RTVIVTAAV 126
             Q   +   I +F T+ LQF+V  EI+   +     + P+ +E +V    RT +V    
Sbjct: 331 Y-QSVKLLYSIGIFFTYALQFYVAAEIIIPAIVS---RVPERFELVVDLSARTAMVCVTC 386

Query: 127 GLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGV 186
            LAV +P +   + L+G+   S L LI P L+E  TY+  G  P    + K+ L+ I G 
Sbjct: 387 VLAVLIPRLDLVISLVGSVSSSALALIIPPLLEVTTYYGEGISP--LTITKDALISILGF 444

Query: 187 LALVFGTQTSIGDIMRAYMPPDSD 210
           +  V GT  S+ ++++   P  SD
Sbjct: 445 VGFVVGTYESLWELIQ---PSHSD 465

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+    F      LN GM  VT++YI L  LGY+ + +  + +IT NLPQ   
Sbjct: 287 VLPLENQMRESKRFPQ---ALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLPQDMW 343

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKK-PKFYEYIVRTVIVTAAVGLA 129
             Q   I     +F T+ +QF+V  EI+  GV      K  +  E+ +R+++V+     A
Sbjct: 344 LYQSVKILYSFGIFVTYSIQFYVPAEIIIPGVTARLHAKWKRICEFGIRSLLVSITRAGA 403

Query: 130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
           + +P +   +  +GA   S L LI P L+E +T+    +    W + KNI +   GV+  
Sbjct: 404 ILIPRLDIVISFVGAVSSSTLALILPPLVEILTFSKDHYNI--WMILKNISIAFTGVVGF 461

Query: 190 VFGTQTSIGDIM---RAYMPPDSDLPVAIINGTLGLAG 224
           + GT  ++ +I+    A +   S  P   +N T   +G
Sbjct: 462 LLGTYVTVEEIIYPTTAVVAGTSQSPFLNVNSTCITSG 499

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 13/201 (6%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+ P  F     +L  GM  VT++YI LG LGYL++G   + +IT NLP   +
Sbjct: 275 VLPLENKMKDPRKFPL---ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWL 331

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIV----RTVIVTAAV 126
             Q   +   I +F T+ LQF+V  EI+   +     + P+  E +V    RTV+V    
Sbjct: 332 Y-QSVKLLYSIGIFFTYALQFYVPAEII---IPFFVSRAPEHCELVVDLFVRTVLVCLTC 387

Query: 127 GLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGV 186
            LA+ +P +   + L+G+   S L LI P L+E  T++  G  P    ++K+ L+ I G 
Sbjct: 388 ILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSP--LTIFKDALISILGF 445

Query: 187 LALVFGTQTSIGDIMRAYMPP 207
           +  V GT  ++ ++++    P
Sbjct: 446 VGFVVGTYEALYELIQPSNAP 466

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 7/194 (3%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PLEN M+   HF     +L+ GM  VT +YI +  LGYL++G+  + +I+ NLP   +
Sbjct: 282 VLPLENKMKNARHFPA---ILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLNLPNCWL 338

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKF-YEYIVRTVIVTAAVGLA 129
              +  + I   + CT+ LQF+V  EI+          +     +  +R V+V     LA
Sbjct: 339 YQSVKLLYIA-GILCTYALQFYVPAEIIIPFAISRVSTRWALPLDLSIRLVMVCLTCLLA 397

Query: 130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
           + +P +   + L+G+   + L LI P L+E  T++  G  P    ++K+ L+ I G +  
Sbjct: 398 ILIPRLDLVISLVGSVSGTALALIIPPLLEVTTFYSEGMSP--LTIFKDALISILGFVGF 455

Query: 190 VFGTQTSIGDIMRA 203
           V GT  ++ +++++
Sbjct: 456 VVGTYQALDELLKS 469

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 7/191 (3%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PL+N M+ P  F     VL  GM  V ++YILLG LGY+K+G  T+ +IT NLP   +
Sbjct: 270 VLPLKNQMKHPQQF---SFVLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNLPNCWL 326

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKK-PKFYEYIVRTVIVTAAVGLA 129
             Q   +   I +F T+ LQF V  EI+         +    F +  VR+ +V      A
Sbjct: 327 Y-QSVKLMYSIGIFFTYALQFHVPAEIIIPFAISQVSESWALFVDLSVRSALVCLTCVSA 385

Query: 130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
           + +P +   + L+G+   S L LI P L+E V ++          + K+I++ I G+L  
Sbjct: 386 ILIPRLDLVISLVGSVSSSALALIIPALLEIVIFYSEDMSCVT--IAKDIMISIVGLLGC 443

Query: 190 VFGTQTSIGDI 200
           +FGT  ++ ++
Sbjct: 444 IFGTYQALYEL 454

Homo sapiens (taxid: 9606)

>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PL++ M++P  F     VL  GM  V  +YI LG LGY+K+G  T+ +IT NLP   +
Sbjct: 277 VLPLKSQMKSPQQFPA---VLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLPICWL 333

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEI----VWNGVKDNFVKKPKFYEYIVRTVIVTAAV 126
             Q   +   + +F T+ LQF V  EI    V + V +N+     F +  VRT +V    
Sbjct: 334 Y-QSVKLMYSVGIFFTYALQFHVPAEIIVPYVVSRVSENWA---LFVDLTVRTALVCLTC 389

Query: 127 GLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGV 186
             AV +P +   + L+G+   S L +I P L+E  T++          + K+I++ I G+
Sbjct: 390 FSAVLIPRLDLVISLVGSVSSSALAIIIPPLLEIATFYSENISCAT--IVKDIMISILGL 447

Query: 187 LALVFGTQTSIGDIMR 202
           L  V GT  ++ ++ +
Sbjct: 448 LGCVLGTYQALYEMTQ 463

Mus musculus (taxid: 10090)

>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           V+PL++ M++P  F     VL  GM  V  +YI LG LGY+K+G  T+ +IT NLP   +
Sbjct: 277 VLPLKSQMKSPQQFPA---VLYLGMSFVIFLYICLGTLGYMKFGADTQASITLNLPNCWL 333

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKK-PKFYEYIVRTVIVTAAVGLA 129
             Q   +   + +F T+ LQF V  EI+   V     +    F +  VR  +V      A
Sbjct: 334 Y-QSVKLMYSVGIFFTYALQFHVPAEIIVPYVVSRASENWALFIDLTVRAALVCLTCFSA 392

Query: 130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
           V +P +   + L+G+   S L LI P L+E  T++          + K+I++ I G+L  
Sbjct: 393 VLIPRLDLVISLVGSVSSSALALIIPPLLEIATFYSENISCTT--IAKDIMISILGLLGC 450

Query: 190 VFGTQTSIGDIMRAYMPP 207
           V GT  ++ ++ +    P
Sbjct: 451 VLGTYQALYEMTQQSRFP 468

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
322799786	472	hypothetical protein SINV_05703 [Solenop	0.815	0.411	0.675	3e-74
158285312	456	AGAP007633-PE [Anopheles gambiae str. PE	0.815	0.425	0.664	7e-73
158285304	464	AGAP007633-PA [Anopheles gambiae str. PE	0.815	0.418	0.664	8e-73
383864394	469	PREDICTED: proton-coupled amino acid tra	0.815	0.413	0.690	1e-72
195127029	470	GI12085 [Drosophila mojavensis] gi|19391	0.815	0.412	0.649	2e-71
195440576	450	GK10461 [Drosophila willistoni] gi|19416	0.823	0.435	0.647	5e-71
195015323	470	GH15148 [Drosophila grimshawi] gi|193897	0.836	0.423	0.623	9e-71
66500029	468	PREDICTED: proton-coupled amino acid tra	0.815	0.414	0.654	2e-70
380019408	468	PREDICTED: proton-coupled amino acid tra	0.815	0.414	0.649	4e-70
195377022	471	GJ13356 [Drosophila virilis] gi|19415444	0.815	0.411	0.623	2e-69

>gi|322799786|gb|EFZ20983.1| hypothetical protein SINV_05703 [Solenopsis invicta]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 161/194 (82%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP HFVG+CGVLN+GM GVT++YI LGFLGY KY + T+D+IT NLP  EI
Sbjct: 278 VMPLENNMKTPQHFVGICGVLNKGMSGVTLVYIFLGFLGYAKYQDTTQDSITLNLPTEEI 337

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
           A Q+  I I +AVFCTFGLQF+VCL+IVWNGVK  F K+P    YIVRT++VT AV LAV
Sbjct: 338 AAQVVKILIALAVFCTFGLQFYVCLDIVWNGVKHRFKKRPVLANYIVRTLLVTGAVLLAV 397

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           AVPTIGPF+GLIGAFCFS+LGL+ PV IE VTYWDVGFGPGNW   KN+++ + G++ALV
Sbjct: 398 AVPTIGPFIGLIGAFCFSILGLLIPVFIETVTYWDVGFGPGNWVALKNVIICVIGLMALV 457

Query: 191 FGTQTSIGDIMRAY 204
           FG++++I DI++ Y
Sbjct: 458 FGSRSAIMDIVKLY 471

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285312|ref|XP_001687876.1| AGAP007633-PE [Anopheles gambiae str. PEST] gi|157019931|gb|EDO64525.1| AGAP007633-PE [Anopheles gambiae str. PEST]

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 162/194 (83%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLEN M+TP +F+GLCGVLNQGM GVT+IYILLGFLGY+KYG+  + +IT NLP  EI
Sbjct: 262 VMPLENQMKTPQNFIGLCGVLNQGMAGVTLIYILLGFLGYVKYGDEAQGSITLNLPIEEI 321

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q   I I +AV+CTFGLQF+VCL+I W  +KD F K+PK  EY++RT++VTAAV LAV
Sbjct: 322 PAQAVKILIALAVYCTFGLQFYVCLDIGWVAIKDRFTKRPKLVEYVMRTILVTAAVLLAV 381

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           AVPTIGPF+GLIGAFCFS+LGL+ P++IE VTYW+ GFGPGNW VWKN++V +FG++ALV
Sbjct: 382 AVPTIGPFIGLIGAFCFSILGLLIPIVIEMVTYWEEGFGPGNWIVWKNVVVFVFGIIALV 441

Query: 191 FGTQTSIGDIMRAY 204
           FG+++SI DI+  Y
Sbjct: 442 FGSKSSIQDILALY 455

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285304|ref|XP_308237.4| AGAP007633-PA [Anopheles gambiae str. PEST] gi|158285306|ref|XP_001687873.1| AGAP007633-PC [Anopheles gambiae str. PEST] gi|158285308|ref|XP_001687874.1| AGAP007633-PB [Anopheles gambiae str. PEST] gi|158285310|ref|XP_001687875.1| AGAP007633-PD [Anopheles gambiae str. PEST] gi|157019927|gb|EAA04057.4| AGAP007633-PA [Anopheles gambiae str. PEST] gi|157019928|gb|EDO64522.1| AGAP007633-PC [Anopheles gambiae str. PEST] gi|157019929|gb|EDO64523.1| AGAP007633-PB [Anopheles gambiae str. PEST] gi|157019930|gb|EDO64524.1| AGAP007633-PD [Anopheles gambiae str. PEST]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 162/194 (83%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLEN M+TP +F+GLCGVLNQGM GVT+IYILLGFLGY+KYG+  + +IT NLP  EI
Sbjct: 270 VMPLENQMKTPQNFIGLCGVLNQGMAGVTLIYILLGFLGYVKYGDEAQGSITLNLPIEEI 329

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q   I I +AV+CTFGLQF+VCL+I W  +KD F K+PK  EY++RT++VTAAV LAV
Sbjct: 330 PAQAVKILIALAVYCTFGLQFYVCLDIGWVAIKDRFTKRPKLVEYVMRTILVTAAVLLAV 389

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           AVPTIGPF+GLIGAFCFS+LGL+ P++IE VTYW+ GFGPGNW VWKN++V +FG++ALV
Sbjct: 390 AVPTIGPFIGLIGAFCFSILGLLIPIVIEMVTYWEEGFGPGNWIVWKNVVVFVFGIIALV 449

Query: 191 FGTQTSIGDIMRAY 204
           FG+++SI DI+  Y
Sbjct: 450 FGSKSSIQDILALY 463

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864394|ref|XP_003707664.1| PREDICTED: proton-coupled amino acid transporter 4-like [Megachile rotundata]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/194 (69%), Positives = 156/194 (80%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP HFVG+CGVLN+GM GVT+IYILLGFLGYLKYG  TED IT NLP  EI
Sbjct: 275 VMPLENNMKTPQHFVGICGVLNKGMSGVTLIYILLGFLGYLKYGIRTEDTITLNLPMEEI 334

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q+  I I +AV+CTFGLQF+VCL+I WNG+KD F KKP    YI+RTVIVT AV LAV
Sbjct: 335 PAQVVQILIALAVYCTFGLQFYVCLDIAWNGIKDRFQKKPLLANYILRTVIVTGAVLLAV 394

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
            VPTIGPF+GLIGAFCFS+LGL+ PV IE VTYWDVGFG GNW   KNI++ I G +ALV
Sbjct: 395 IVPTIGPFIGLIGAFCFSILGLLIPVFIETVTYWDVGFGAGNWVALKNIIICIIGFMALV 454

Query: 191 FGTQTSIGDIMRAY 204
           FG+++S+  I+  Y
Sbjct: 455 FGSRSSLIQIVALY 468

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127029|ref|XP_002007971.1| GI12085 [Drosophila mojavensis] gi|193919580|gb|EDW18447.1| GI12085 [Drosophila mojavensis]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 161/194 (82%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP +F+G+CGVL+QGM GVT+IY+LLGFLGYL+YG  T ++IT NLP  E 
Sbjct: 270 VMPLENNMKTPKNFLGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESITLNLPIEEW 329

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q   + I +AV+CTFGLQFFVCLEIVW+G+K+   K+P F  Y++RTV+VTAAV LAV
Sbjct: 330 PAQAVKVLIALAVYCTFGLQFFVCLEIVWDGIKERCTKRPIFVNYVLRTVLVTAAVVLAV 389

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           +VPTI PF+GLIGAFCFS+LGLIFPV+IE V +WD GFGPGNW +WKNI++++ GV AL+
Sbjct: 390 SVPTIAPFMGLIGAFCFSILGLIFPVIIELVVHWDSGFGPGNWILWKNIVIMLCGVAALI 449

Query: 191 FGTQTSIGDIMRAY 204
           FG+ ++I DIM+ Y
Sbjct: 450 FGSLSAIQDIMKVY 463

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195440576|ref|XP_002068116.1| GK10461 [Drosophila willistoni] gi|194164201|gb|EDW79102.1| GK10461 [Drosophila willistoni]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 159/196 (81%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP +F+GLCGVL+QGM GVT++Y+LLGFLGYL YG+ TE +IT NLP HE 
Sbjct: 252 VMPLENNMKTPQNFLGLCGVLSQGMSGVTLVYMLLGFLGYLHYGDATEQSITLNLPVHEW 311

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q   + IG+AV+CTFGLQF+VCLEIVW+G+K+   K+P F  Y++RTV+VTAAV LAV
Sbjct: 312 PAQAVKVLIGLAVYCTFGLQFYVCLEIVWDGIKEKCTKRPVFVNYVLRTVLVTAAVVLAV 371

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           +VPTI PF+GLIGAFCFS+LGLIFPVLIE V +WD GFG  NW VWKNI+++I G  AL+
Sbjct: 372 SVPTIAPFMGLIGAFCFSILGLIFPVLIEIVVHWDTGFGAYNWIVWKNIIIVICGFAALI 431

Query: 191 FGTQTSIGDIMRAYMP 206
           FG++ +I  I+  Y P
Sbjct: 432 FGSEDAIRQIIAEYKP 447

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195015323|ref|XP_001984180.1| GH15148 [Drosophila grimshawi] gi|193897662|gb|EDV96528.1| GH15148 [Drosophila grimshawi]

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 124/199 (62%), Positives = 161/199 (80%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP +F+G+CGVL++GM GVTMIY+LLGFLGY++YG LTE++IT NLP  E 
Sbjct: 270 VMPLENNMKTPQNFLGICGVLSKGMSGVTMIYMLLGFLGYMRYGTLTEESITLNLPIEEW 329

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q   I I +AV+CTFGLQF+VCLEIVW+G+KD   K+P    Y++RTV+VTAAV LA+
Sbjct: 330 PAQAVKILIALAVYCTFGLQFYVCLEIVWDGIKDKCTKRPILVNYVLRTVLVTAAVVLAI 389

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           +VPTI PF+GLIGAFCFS+LGLIFPV+IE + +WD GFGPGNW VWKN+++++ G  AL 
Sbjct: 390 SVPTIAPFMGLIGAFCFSILGLIFPVIIELIVHWDSGFGPGNWIVWKNVVIVLCGFGALF 449

Query: 191 FGTQTSIGDIMRAYMPPDS 209
           FG+ +++ DIM+ Y  P  
Sbjct: 450 FGSVSAVRDIMKVYSGPSE 468

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500029|ref|XP_396451.2| PREDICTED: proton-coupled amino acid transporter 4 [Apis mellifera]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 156/194 (80%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP HFVG+CGVLN+GM GVT+IYILLGFLGY+KY + T D+IT NLP  EI
Sbjct: 274 VMPLENNMKTPQHFVGICGVLNKGMSGVTLIYILLGFLGYVKYQDETLDSITLNLPTEEI 333

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q+  I I +AV+CTFGLQF+VCL+I WNG+KD F KKP    YI+RTV+VT AV LAV
Sbjct: 334 PAQVVKILIALAVYCTFGLQFYVCLDIAWNGIKDRFQKKPMLANYILRTVMVTGAVLLAV 393

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
            VPTI PF+GLIGAFCFS+LGL+ PV +E VTYWDVGFGPGNW   KN+++ I G++ALV
Sbjct: 394 IVPTIEPFIGLIGAFCFSILGLLIPVFVETVTYWDVGFGPGNWVALKNVIICIIGIMALV 453

Query: 191 FGTQTSIGDIMRAY 204
           FG+++++  I   Y
Sbjct: 454 FGSRSALIQIANLY 467

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019408|ref|XP_003693599.1| PREDICTED: proton-coupled amino acid transporter 4-like [Apis florea]

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 155/194 (79%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP HFVG+CGVLN+GM GVT+IYILLGFLGY KY + T D+IT NLP  EI
Sbjct: 274 VMPLENNMKTPQHFVGICGVLNKGMSGVTLIYILLGFLGYAKYQDETLDSITLNLPTEEI 333

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q+  I I +AV+CTFGLQF+VCL+I WNG+KD F KKP    YI+RTV+VT AV LAV
Sbjct: 334 PAQVVKILIALAVYCTFGLQFYVCLDIAWNGIKDRFQKKPMLANYILRTVMVTGAVLLAV 393

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
            VPTI PF+GLIGAFCFS+LGL+ PV +E VTYWDVGFGPGNW   KN+++ I G++AL+
Sbjct: 394 IVPTIEPFIGLIGAFCFSILGLLIPVFVETVTYWDVGFGPGNWVALKNVIICIIGIMALI 453

Query: 191 FGTQTSIGDIMRAY 204
           FG+++++  I   Y
Sbjct: 454 FGSRSALIQIANLY 467

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377022|ref|XP_002047291.1| GJ13356 [Drosophila virilis] gi|194154449|gb|EDW69633.1| GJ13356 [Drosophila virilis]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 159/194 (81%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           VMPLENNM+TP +F+G+CGVL+QGM GVT+IY+LLGFLGY++YG  T ++IT NLP  E 
Sbjct: 271 VMPLENNMKTPKNFLGICGVLSQGMSGVTLIYMLLGFLGYMRYGNATGESITLNLPIEEW 330

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
             Q   + I +AV+CTFGLQF+VCLEIVW+G+K+   K+P F  Y++RTV+VTAAV LA+
Sbjct: 331 PAQAVKVLIALAVYCTFGLQFYVCLEIVWDGIKEKCTKRPTFVNYVLRTVLVTAAVVLAI 390

Query: 131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
           +VPTI PF+GLIGAFCFS+LGLIFPV+IE V +WD GFG G W +WKNI++++ G+ ALV
Sbjct: 391 SVPTIAPFMGLIGAFCFSILGLIFPVIIELVVHWDSGFGAGKWILWKNIIIILCGIGALV 450

Query: 191 FGTQTSIGDIMRAY 204
           FG+ ++I DIM+ Y
Sbjct: 451 FGSHSAIKDIMKVY 464

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.815	0.388	0.634	5.6e-68
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.802	0.378	0.435	4.2e-40
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.815	0.430	0.428	5.3e-40
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.831	0.417	0.386	1.7e-36
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.810	0.415	0.391	2.4e-35
FB|FBgn0030817	477	CG4991 [Drosophila melanogaste	0.815	0.406	0.365	1.3e-29
FB|FBgn0052079	457	CG32079 [Drosophila melanogast	0.802	0.417	0.321	7.1e-29
FB|FBgn0030816	468	CG16700 [Drosophila melanogast	0.810	0.412	0.336	5.7e-27
FB|FBgn0052081	471	CG32081 [Drosophila melanogast	0.802	0.405	0.343	7.8e-27
UNIPROTKB|G3X6P9	503	SLC36A4 "Uncharacterized prote	0.886	0.419	0.328	1.2e-22

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 123/194 (63%), Positives = 157/194 (80%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             VMPLENNM+TP  F+G+CGVL+QGM GVT+IY+LLGFLGYL+YG  T ++IT NLP  E 
Sbjct:   299 VMPLENNMKTPQSFLGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESITLNLPIEEW 358

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAV 130
               Q   + I +AV+CTFGLQFFVCLEI+W+G+K+   K+P    Y++RTV+VTAAV LAV
Sbjct:   359 PAQTVKVLISLAVYCTFGLQFFVCLEIIWDGIKEKCKKRPTLVNYVLRTVLVTAAVVLAV 418

Query:   131 AVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALV 190
             AVPTIGPF+GLIGAFCFS+LGLIFPV+IE + +W+ GFG  NW +WKN ++ + G+ ALV
Sbjct:   419 AVPTIGPFMGLIGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALV 478

Query:   191 FGTQTSIGDIMRAY 204
             FGTQ +I DI++AY
Sbjct:   479 FGTQAAIKDIVKAY 492

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 84/193 (43%), Positives = 122/193 (63%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             V+PLENNM+TP  F G  GVLN GM  V  +Y  +GF GYLKYGE  E +IT NLPQ + 
Sbjct:   307 VLPLENNMRTPEDFGGTTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDT 366

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNF--VKKPKFYEYIVRTVIVTAAVGL 128
               Q+  I++ +A+F ++ LQF+V + IV   V+ +F   +       ++R V+VT    L
Sbjct:   367 LSQLVRISMAVAIFLSYTLQFYVPVNIVEPFVRSHFDTTRAKDLSATVLRVVLVTFTFLL 426

Query:   129 AVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLA 188
             A  +P +G  + L+GA   S L LI P +IE +T+++VG+G  NW +WK++L+LIFG+  
Sbjct:   427 ATCIPNLGSIISLVGAVSSSALALIAPPIIEVITFYNVGYGRFNWMLWKDVLILIFGLCG 486

Query:   189 LVFGTQTSIGDIM 201
              VFGT  S+  I+
Sbjct:   487 FVFGTWASLAQIL 499

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 84/196 (42%), Positives = 119/196 (60%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             ++ +E NM TP  FVG CG+LN GM  V  +Y+LLGF GY KYG  +E +IT N+PQ EI
Sbjct:   255 ILAIEENMATPKSFVGPCGILNSGMSIVLGLYVLLGFFGYWKYGNESEGSITLNIPQSEI 314

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPK--FYEYIVRTVIVTAAVGL 128
               Q+  +   I  + ++ LQ +V   I+W+       K+ +  FYE I R +IV    G 
Sbjct:   315 PAQVVKVFFAITTWISYALQGYVTAHILWDKYLAKRFKETRQTFYELIFRAIIVLLTFGC 374

Query:   129 AVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLA 188
             AVA+P +  FL L+G+FC S+LGLIFPVL++    +  G+GP   ++  N+L+L FG+  
Sbjct:   375 AVAIPDLSVFLSLVGSFCLSILGLIFPVLLQICVQYTEGYGPFRIKLIINLLLLCFGIFG 434

Query:   189 LVFGTQTSIGDIMRAY 204
              V GT  SI DI+  Y
Sbjct:   435 GVVGTYVSILDIIAVY 450

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 77/199 (38%), Positives = 118/199 (59%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             VMP+EN+M+ P HF+G  GVLN  M  V  +Y ++GF GY+++G+    +IT NLP+   
Sbjct:   276 VMPVENSMRKPQHFLGCPGVLNIAMVTVVSLYAIIGFFGYVRFGDQVRGSITLNLPEGAW 335

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFV-KKPKFYEYIVRTVIVTAAVGLA 129
                 A + + +A+  TFGLQF+V  EI+W  +   F  +K    + ++R+ I+  + G+A
Sbjct:   336 LGDTAKLLMAVAILFTFGLQFYVPNEILWRKISHKFSPEKHNITQILLRSGIILLSGGVA 395

Query:   130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
              A+P + PF+ L+GA  FSLLG+  P  +E V  W    G   W++ KNI + +F +LAL
Sbjct:   396 AAIPNLEPFISLVGAVFFSLLGIFVPSFVETVYLWPDRLGVCKWKLVKNIFLGVFSILAL 455

Query:   190 VFGTQTSIGDIMRAYMPPD 208
             V G   SI +I+  Y   D
Sbjct:   456 VAGAVASINEIIEMYSDDD 474

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 78/199 (39%), Positives = 112/199 (56%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             ++PLEN M+TP  F G CGVLN  M  +  +Y+ +G  GYL YG     +IT N+P+HE+
Sbjct:   266 ILPLENEMKTPQKFGGSCGVLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNMPEHEV 325

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFV---KKPKFYEYIVRTVIVTAAVG 127
                     +  A++ T GL  +V ++I WN      +   +   F+EY VRT +V     
Sbjct:   326 LSMCVKGMLAFAIYITHGLACYVAIDITWNDYVAKRLGAQRNALFWEYAVRTGLVLITFL 385

Query:   128 LAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYW--DVGFGPGNWRVWKNILVLIFG 185
             LAVA+P +  F+ L GA C S LGL FP LI+  T+W    GF    W V  N +++I G
Sbjct:   386 LAVAIPNLELFISLFGALCLSALGLAFPALIQICTHWYNTKGFAKV-WLVLSNFVLIIVG 444

Query:   186 VLALVFGTQTSIGDIMRAY 204
             +L LV GT TS+ +I+  +
Sbjct:   445 ILGLVIGTYTSLKEIVLTF 463

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0030817 CG4991 [Drosophila melanogaster (taxid:7227)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 72/197 (36%), Positives = 111/197 (56%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             ++PL N+M+ P  F    GVLN  M   T ++I  GF+ Y+++GE    +IT NL   E+
Sbjct:   280 ILPLRNSMRRPEKFSTRFGVLNSTMFFTTALFIFTGFVSYVRWGEEVAGSITLNLVVEEV 339

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVK--DNFVKK-PKFYEYIVRTVIVTAAVG 127
               Q+  +   + VF  + +QFFV ++I+W  +K  +N  +K P   +  +R  +V    G
Sbjct:   340 FSQVVKVIAALGVFLGYPIQFFVMIKILWPPLKRSNNCTQKYPITSQVCLRFFMVMMTFG 399

Query:   128 LAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVL 187
             +A+ VP +  F+ LIGA C + L  + PVLI+FVT   V    G W   KNIL+L   VL
Sbjct:   400 VALVVPKLNLFISLIGALCSTCLAFVIPVLIDFVTRAQVPKALGVWSYIKNILILTVAVL 459

Query:   188 ALVFGTQTSIGDIMRAY 204
              +V GT  SI +I++ +
Sbjct:   460 GIVTGTYQSIVEIVKEF 476

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0052079 CG32079 [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/199 (32%), Positives = 115/199 (57%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             ++ L  +M+ P   +G CGVLNQGM  V   Y + GF GY +YGE T ++I  N+PQ++I
Sbjct:   257 ILSLGRSMRKPESLMGTCGVLNQGMIVVISFYAVFGFFGYWRYGENTSNSILQNMPQNDI 316

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNG-----VKDNFVKKPKFYEYIVRTVIVTAA 125
              P++A     +A+F ++ LQ +V ++I+W       ++D +++     E ++R  +V A+
Sbjct:   317 LPKLATGIFALAIFFSYALQGYVTVDIIWRNYLEPELEDRYLRT---VECLLRIALVIAS 373

Query:   126 VGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFG 185
             V +A+  P  G  L L+G+FC + LGLI P +++    ++  +GPG   + +++L +  G
Sbjct:   374 VLVAIQYPDFGLLLSLVGSFCLAQLGLILPGIVDICLRYEEDYGPGKIFLIRSMLFICMG 433

Query:   186 VLALVFGTQTSIGDIMRAY 204
             +   V GT  ++  +   Y
Sbjct:   434 LAGGVAGTVVTLQTLYARY 452

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0030816 CG16700 [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 66/196 (33%), Positives = 109/196 (55%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             VMPL+N M+ P+ F    GVLN GM  V+++++  G +GY+K+GE    ++T NL    +
Sbjct:   268 VMPLKNAMRKPHQFERPLGVLNVGMFLVSVMFMFAGSVGYMKWGEQVGGSLTLNLGDTIL 327

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKD--NFVKKPKFYEYIVRTVIVTAAVGL 128
             A Q   + +   V   + LQFFV ++I+W   K       +    E   RT +V   + +
Sbjct:   328 A-QAVKLMVSAGVLLGYPLQFFVAIQIMWPNAKQMCGIEGRSLLGELGFRTFMVLVTLAI 386

Query:   129 AVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLA 188
             A  VP +G F+ LIGA C + L L+FP +IE ++  ++  GPG W   KN+++L+  +L 
Sbjct:   387 AEMVPALGLFISLIGALCSTALALVFPPVIELISRSELNKGPGIWICVKNLVILVLALLG 446

Query:   189 LVFGTQTSIGDIMRAY 204
                G+  S+  I++ +
Sbjct:   447 FFTGSYESLKQIVKHF 462

GO:0015495 "gamma-aminobutyric acid:hydrogen symporter activity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0052081 CG32081 [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 7.8e-27, P = 7.8e-27
 Identities = 67/195 (34%), Positives = 107/195 (54%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             ++ +E  M  P H++G  G+L++ +  V + Y+  G +GY +YG+ T  +I+ N+P  E+
Sbjct:   232 MLAVEATMAKPRHYLGWFGILDRAILLVIISYVTFGLMGYWRYGDETAGSISLNIPTDEV 291

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGV--KDNFVKKPKFYEYIVRTVIVTAAVGL 128
               Q+A   I  A+F T+ L  FV ++I+ N    K+  +      E I+R   V      
Sbjct:   292 LSQVAKGFIAAAIFLTYPLAGFVIIDIIMNHFWNKNGDLPNAALKESILRACTVVLICIT 351

Query:   129 AVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYW--DVGFGPGNWRVWKNILVLIFGV 186
             A+  P +GP L L+GA   SLL L+FP LIE   Y+  +  +G   W + K+I  +I G+
Sbjct:   352 AIIAPNLGPLLSLVGALTISLLNLVFPALIEICLYYPPEYNYGKLKWVLVKDIFYVIVGI 411

Query:   187 LALVFGTQTSIGDIM 201
             L LV GT  SI D++
Sbjct:   412 LILVQGTVFSIKDMI 426

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|G3X6P9 SLC36A4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 75/228 (32%), Positives = 114/228 (50%)

Query:    11 VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
             V+PLEN M+    F      LN GMG VT +Y+ L  LGY+ + +  + +IT NLPQ   
Sbjct:   289 VLPLENQMKESKRFPQ---ALNIGMGIVTALYVSLATLGYMCFHDDIKGSITLNLPQDVW 345

Query:    71 APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPK-FYEYIVRTVIVTAAVGLA 129
               Q   I     +F T+ +QF+V  EI+   +   F  K K  YE+ +R+ +VT     A
Sbjct:   346 LYQSVKILYSFGIFVTYSIQFYVPAEIIIPVITSRFHAKWKQIYEFAIRSFLVTITCAGA 405

Query:   130 VAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLAL 189
             + +P +   +  +GA   S L LI P L+E +T+    +    W V KN+ ++  GV+  
Sbjct:   406 ILIPRLDIVIAFVGAVSSSTLALILPPLVEILTFSKEHYSI--WMVLKNVSIVFTGVVGF 463

Query:   190 VFGTQTSIGDIMRAYMPPDSDLPVAIINGTLGLAGNASLPSNGTAFTA 237
             + GT  ++ +I+  Y  P    P AI +   G     SL  N T FT+
Sbjct:   464 LLGTYVTVEEII--Y--PT---PRAITSTPHG----PSLNLNSTCFTS 500

GO:0015827 "tryptophan transport" evidence=IEA

GO:0015824 "proline transport" evidence=IEA

GO:0015808 "L-alanine transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	238
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	5e-29
PTZ00206	467	PTZ00206, PTZ00206, amino acid transporter; Provis	4e-07
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	5e-04

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  111 bits (281), Expect = 5e-29
 Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 7/194 (3%)

Query: 11  VMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEI 70
           ++P++N M++P+ F  +  VL   +  VT++YIL+G +GYL +G   + NI  NLP+ + 
Sbjct: 212 LLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDW 271

Query: 71  APQIANIAIGIAVFCTFGLQFFVCLEIVWNGVK---DNFVKKPKFYE--YIVRTVIVTAA 125
              IAN+ + + +  ++ LQ F   +IV N +     +    PK      ++R+ +V   
Sbjct: 272 LIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVIT 331

Query: 126 VGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVW--KNILVLI 183
             +A++VP +G FL L+GA   + L  I P L                      +++ ++
Sbjct: 332 YLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIV 391

Query: 184 FGVLALVFGTQTSI 197
            G+L + +G    I
Sbjct: 392 IGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 10/195 (5%)

Query: 9   SQVMPLENNMQTPNHFVG-LCGVLNQGMGGVTMIYILLGFLGYLKYG-ELTEDNITYNLP 66
            Q+   E  M   N  VG         MG    +Y+L  F GY+ +G  +T   +    P
Sbjct: 271 FQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP 330

Query: 67  QHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAV 126
            +E A  +  + + + +F ++ L    C   +++ +  +  +K  F+++ +  V ++  +
Sbjct: 331 VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA-RKVAFWKHCIAVVTLSVVM 389

Query: 127 GL-AVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGF---GPGNWRVWKNILVL 182
            L  + +P I   LG  G+    LLG I P L     Y   GF     G +      +VL
Sbjct: 390 LLCGLFIPKINTVLGFAGSISGGLLGFILPAL--LFMY-SGGFTWQKVGPFYYISTYVVL 446

Query: 183 IFGVLALVFGTQTSI 197
           I GV+A+VFGT  +I
Sbjct: 447 ITGVIAIVFGTGATI 461

Length = 467

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 23/177 (12%)

Query: 34  GMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQ-----IANIAIGIAV----- 83
           G     ++YIL+GF  +  +G L   NI     Q+          I +  + IA+     
Sbjct: 234 GSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFAL 293

Query: 84  ------FCTFGLQFFVCLE--IVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTI 135
                 F    L  F  L      +  K    K             +    G A+A+   
Sbjct: 294 FAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYA 353

Query: 136 GPFLGLIGAFCFSLLGLIFPV-LIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVF 191
           G  +  IGA     L  I P  LI  +    V    GN+ +   +LVL+FG+L ++ 
Sbjct: 354 GGLIATIGAPIIPALLFIKPRKLIYKLPALKV--YGGNFLL--LLLVLLFGILVILS 406

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG1304|consensus	449		100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1303|consensus	437		99.97
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.97
KOG1305|consensus	411		99.94
KOG4303|consensus	524		99.94
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.36
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.68
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.47
PRK15132	403	tyrosine transporter TyrP; Provisional	98.02
PRK10483	414	tryptophan permease; Provisional	97.88
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.67
PRK09664	415	tryptophan permease TnaB; Provisional	97.66
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.6
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.57
PRK10655	438	potE putrescine transporter; Provisional	97.32
TIGR00909	429	2A0306 amino acid transporter.	97.26
PRK10644	445	arginine:agmatin antiporter; Provisional	97.2
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.15
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.12
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	96.8
PRK10249	458	phenylalanine transporter; Provisional	96.76
PRK11387	471	S-methylmethionine transporter; Provisional	96.74
PRK10197	446	gamma-aminobutyrate transporter; Provisional	96.72
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	96.69
PRK10746	461	putative transport protein YifK; Provisional	96.65
PRK11021	410	putative transporter; Provisional	96.65
TIGR00913	478	2A0310 amino acid permease (yeast).	96.64
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.64
TIGR00907	482	2A0304 amino acid permease (GABA permease).	96.61
PRK15049	499	L-asparagine permease; Provisional	96.59
PRK11357	445	frlA putative fructoselysine transporter; Provisio	96.51
KOG1287|consensus	479		96.44
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	96.43
PRK10836	489	lysine transporter; Provisional	96.41
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	96.41
TIGR00911	501	2A0308 L-type amino acid transporter.	96.32
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	96.27
PRK15238	496	inner membrane transporter YjeM; Provisional	96.2
PRK10238	456	aromatic amino acid transporter; Provisional	96.19
PRK10580	457	proY putative proline-specific permease; Provision	96.1
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.01
TIGR00906	557	2A0303 cationic amino acid transport permease.	96.0
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	95.97
TIGR00930	953	2a30 K-Cl cotransporter.	94.25
TIGR00912	359	2A0309 spore germination protein (amino acid perme	93.41
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	87.59
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	86.52
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	86.14
KOG1286|consensus	554		84.49

>KOG1304|consensus

Probab=100.00  E-value=1.3e-40  Score=296.92  Aligned_cols=198  Identities=44%  Similarity=0.792  Sum_probs=188.1

Q ss_pred             CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGI   81 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i   81 (238)
                      .|||||++++.|++++||+|++|...++|++.++.+++++|..+|++||+.|||++++.|+.|+|+ +++.+.+|+++++
T Consensus       251 ifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai  329 (449)
T KOG1304|consen  251 IFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAI  329 (449)
T ss_pred             HHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHH
Confidence            489999999999999999999999777799999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHH
Q psy16729         82 AVFCTFGLQFFVCLEIVWNGVKDNFV-KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEF  160 (238)
Q Consensus        82 ~ll~s~pl~~~p~~~~l~~~~~~~~~-~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl  160 (238)
                      .++++||+|++|+.+++|+.+.++.. ++.+|..+.+|..++.++.++|..+||++++++++||++++.+.+++|+++++
T Consensus       330 ~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel  409 (449)
T KOG1304|consen  330 AIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL  409 (449)
T ss_pred             HHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence            99999999999999999999888776 44678889999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q psy16729        161 VTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDI  200 (238)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~i  200 (238)
                      +.++++.++..+|+.+.+.+++++|+++++.|||.+++++
T Consensus       410 ~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  410 ITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999886567789999999999999999999999999864

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=259.62  Aligned_cols=197  Identities=21%  Similarity=0.327  Sum_probs=169.7

Q ss_pred             CcccccceeeccchhhcCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCC-CCCCcHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN--HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNL-PQHEIAPQIANIA   78 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~--~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~-~~~~~~~~i~~i~   78 (238)
                      .|||+||..++++|+|||||+  |+.+   ++..++.+++++|..+|++||+.|||+++++++.|+ |.+++...+++++
T Consensus       266 ~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~  342 (467)
T PTZ00206        266 IFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVG  342 (467)
T ss_pred             HhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHH
Confidence            589999999999999999865  5554   778999999999999999999999999999999999 5667888999999


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHH
Q psy16729         79 IGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLI  158 (238)
Q Consensus        79 ~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~  158 (238)
                      +.+.++++||++++|+|+.+++.+.++.++.+.|++...+..+++.++++|+.+|+++.+++++||++++.++|++|++|
T Consensus       343 ~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf  422 (467)
T PTZ00206        343 VLVKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALL  422 (467)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999988754433445567777777888888999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q psy16729        159 EFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIM  201 (238)
Q Consensus       159 yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii  201 (238)
                      |++....+..+..+|+.+.+++++++|+++.+.|||+++++.+
T Consensus       423 ~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        423 FMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9984211100123455688999999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=8.2e-33  Score=253.69  Aligned_cols=200  Identities=20%  Similarity=0.182  Sum_probs=172.1

Q ss_pred             CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh--hhhhCCCCCCcHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED--NITYNLPQHEIAPQIANIAI   79 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~--~il~n~~~~~~~~~i~~i~~   79 (238)
                      .|+|+||+++||+++|||||++|++   ++..+...++++|..+|+.||+.|||++++  +.+.|+|++ .+.+++++++
T Consensus       243 ~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-~~~~~~~~~~  318 (473)
T PLN03074        243 LYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-GWRDAAVILM  318 (473)
T ss_pred             HHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-hHHHHHHHHH
Confidence            5899999999999999999999998   567899999999999999999999999864  456678863 4679999999


Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHH
Q psy16729         80 GIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIE  159 (238)
Q Consensus        80 ~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~y  159 (238)
                      .++++.+||+++.|..+..|+.+..+ +++..+.|.++|+++++.++++|+.+|+|+++++++||++++.++|++|+++|
T Consensus       319 ~i~~~~sy~l~~~p~~~~~e~~~~~~-~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~  397 (473)
T PLN03074        319 LIHQFITFGFACTPLYFVWEKAIGVH-DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAH  397 (473)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988887775433 23445788999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCC------------CCCcchHHHHhHHHHHH-HHHHHHHhHHHHHHHHHHHcCC
Q psy16729        160 FVTYWDVG------------FGPGNWRVWKNILVLIF-GVLALVFGTQTSIGDIMRAYMP  206 (238)
Q Consensus       160 l~~~~~~~------------~~~~~~~~~~~~~ii~~-Gi~~~v~gt~~si~~ii~~~~~  206 (238)
                      ++.++++.            .++.+|..++|++++++ |+++++.|+|++++++++++++
T Consensus       398 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~  457 (473)
T PLN03074        398 MLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT  457 (473)
T ss_pred             HHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence            99766531            11123356899999985 6666799999999999999987

>KOG1303|consensus

Probab=99.97  E-value=2e-31  Score=240.73  Aligned_cols=196  Identities=23%  Similarity=0.383  Sum_probs=174.4

Q ss_pred             CCcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHH
Q psy16729          1 MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIG   80 (238)
Q Consensus         1 ~~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~   80 (238)
                      ++|+|+||+++||||++||+|++|++   ++.+++.+++.+|..++++||++|||+++++++.|++++.++...+++++.
T Consensus       237 iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~  313 (437)
T KOG1303|consen  237 IAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIV  313 (437)
T ss_pred             eeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHH
Confidence            47999999999999999999999998   578999999999999999999999999999999999755789999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhhccCC---CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHH
Q psy16729         81 IAVFCTFGLQFFVCLEIVWNGVKDNFV---KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVL  157 (238)
Q Consensus        81 i~ll~s~pl~~~p~~~~l~~~~~~~~~---~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l  157 (238)
                      +|++.+|+++..|..+.+|+....+.+   ++..+.|.+.|+.+++.++++|+.+|+|+++++++||+...++++++|++
T Consensus       314 ~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~  393 (437)
T KOG1303|consen  314 LHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCL  393 (437)
T ss_pred             HHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875554   23446899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCcchHHHHhHHH-HHHHHHHHHHhHHHHHHHHHH
Q psy16729        158 IEFVTYWDVGFGPGNWRVWKNILV-LIFGVLALVFGTQTSIGDIMR  202 (238)
Q Consensus       158 ~yl~~~~~~~~~~~~~~~~~~~~i-i~~Gi~~~v~gt~~si~~ii~  202 (238)
                      +|++.++.+++.. +|  ..++.+ +++|++.++.+...+++++++
T Consensus       394 ~yl~~~k~~~~s~-~~--~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  394 MYLLIKKPKRFSP-KW--LLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHHhhhhhhhhH-HH--HHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999876654222 33  455555 788999999999898888775

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.97  E-value=4.3e-32  Score=244.41  Aligned_cols=197  Identities=27%  Similarity=0.502  Sum_probs=175.2

Q ss_pred             CCcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHH
Q psy16729          1 MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIG   80 (238)
Q Consensus         1 ~~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~   80 (238)
                      ++|+|.||+.+|++++|||+|+++++..++...++.+++++|..+|..||++|||+++++++.|+|++++...++++++.
T Consensus       201 ~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~  280 (409)
T PF01490_consen  201 IIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLV  280 (409)
T ss_pred             hhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccch
Confidence            47899999999999999999999773334789999999999999999999999999999999999987789999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhhhcc---------CCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHH
Q psy16729         81 IAVFCTFGLQFFVCLEIVWNGVKDN---------FVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLG  151 (238)
Q Consensus        81 i~ll~s~pl~~~p~~~~l~~~~~~~---------~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~  151 (238)
                      ++++.+||++.+|.++.+++.+.++         .++.++++|..+|+.+++.+.++|+.+|+++++++++|+++++.++
T Consensus       281 i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~  360 (409)
T PF01490_consen  281 ISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFIS  360 (409)
T ss_pred             hhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHH
Confidence            9999999999999999999998753         1134457889999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHhccCCCCCcchH--HHHhHHHHHHHHHHHHHhHHHHH
Q psy16729        152 LIFPVLIEFVTYWDVGFGPGNWR--VWKNILVLIFGVLALVFGTQTSI  197 (238)
Q Consensus       152 fi~P~l~yl~~~~~~~~~~~~~~--~~~~~~ii~~Gi~~~v~gt~~si  197 (238)
                      |++|+++|++.+++++.+.+++.  ...+++++++|++.++.|+++++
T Consensus       361 fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  361 FILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             HHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            99999999999877643232322  36688999999999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305|consensus

Probab=99.94  E-value=1.9e-26  Score=207.24  Aligned_cols=197  Identities=22%  Similarity=0.309  Sum_probs=175.0

Q ss_pred             CCcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcH------HHH
Q psy16729          1 MANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIA------PQI   74 (238)
Q Consensus         1 ~~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~------~~i   74 (238)
                      ++|||.||..+.++++|||||++.+.. .+.+.+...+.++|..+|.+||+.|||++.+|++.++|+.+..      ...
T Consensus       203 ~~faf~Ch~n~~~i~~El~~~s~~~i~-~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~  281 (411)
T KOG1305|consen  203 FVFAFTCHSNVFPIYNELKDRSVKKIQ-RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLC  281 (411)
T ss_pred             hheeeeccccceeeeeeeeCchHHHHH-HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHH
Confidence            579999999999999999999863332 3789999999999999999999999999999999999864433      478


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCC---CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHH
Q psy16729         75 ANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFV---KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLG  151 (238)
Q Consensus        75 ~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~---~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~  151 (238)
                      ++..+.++.+..+|++.+|+|..+++.+.+..+   +.++.+|.+++.+++..+.+.|+++|+++++++++||++++.++
T Consensus       282 vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~  361 (411)
T KOG1305|consen  282 VRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSIS  361 (411)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhH
Confidence            999999999999999999999999888887665   34556889999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16729        152 LIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRA  203 (238)
Q Consensus       152 fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~  203 (238)
                      |++|+++|++..++     +.+++...+...++|+..+++|+...+.++..+
T Consensus       362 FI~P~~~yl~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  362 FILPALYYLKASKK-----KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHHHHHhhheeecc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998765     245667889999999999999999999988864

>KOG4303|consensus

Probab=99.94  E-value=1e-27  Score=205.25  Aligned_cols=201  Identities=24%  Similarity=0.399  Sum_probs=179.5

Q ss_pred             CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGI   81 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~~i   81 (238)
                      .|++..|--.|+++.+|++|++|+.   ++.++.+...++-..+|.+||++|||.|+..|++|+|. +....+++++.++
T Consensus       312 VFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~  387 (524)
T KOG4303|consen  312 VFSYTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVV  387 (524)
T ss_pred             EEeeeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHH
Confidence            4677788888999999999999998   68999999999999999999999999999999999996 5678899999999


Q ss_pred             HHHHhhhhhhHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHH
Q psy16729         82 AVFCTFGLQFFVCLEIVWNGVKDNFVK-----------KPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLL  150 (238)
Q Consensus        82 ~ll~s~pl~~~p~~~~l~~~~~~~~~~-----------~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l  150 (238)
                      ..++|||+-++..++.+|+.++...|+           .-+-....+|+++++++.++|+++|+|..+++++|++.+..+
T Consensus       388 KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmL  467 (524)
T KOG4303|consen  388 KALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTML  467 (524)
T ss_pred             HHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccH
Confidence            999999999999999999998765431           111234678999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCC
Q psy16729        151 GLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTSIGDIMRAYMPPDS  209 (238)
Q Consensus       151 ~fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~  209 (238)
                      +|+.|++||+++.+++   ....++..+..++++|..+.+.|.|.+.+++++.+..+.+
T Consensus       468 sFiwP~lFHl~ik~~~---L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~  523 (524)
T KOG4303|consen  468 SFIWPALFHLYIKEKT---LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS  523 (524)
T ss_pred             HHHHHHHHHHHHHHHh---hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence            9999999999998875   3345678899999999999999999999999999977644

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.36  E-value=1.3e-11  Score=112.17  Aligned_cols=188  Identities=20%  Similarity=0.150  Sum_probs=134.0

Q ss_pred             CcccccceeeccchhhcCCCCC--CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCCCCCCcHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNH--FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAI   79 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~--~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~i~~i~~   79 (238)
                      .++|++|+.++++++||+++++  .+|   +......+..++|..++..+|..+|+.+.++++++.++++. ........
T Consensus       203 vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~-~l~~~~~~  278 (415)
T COG0814         203 VFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNIS-LLSALAGV  278 (415)
T ss_pred             HhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHH-HHHHHHHh
Confidence            5899999999999999998875  666   68899999999999999999999999999999999986433 33333334


Q ss_pred             HHHHHHhhhhhhHHHHHHHHh--------------hhhc-c-CC-CcchhHH--HHHHHHHHHHHHHHHHhcCChhHHHh
Q psy16729         80 GIAVFCTFGLQFFVCLEIVWN--------------GVKD-N-FV-KKPKFYE--YIVRTVIVTAAVGLAVAVPTIGPFLG  140 (238)
Q Consensus        80 ~i~ll~s~pl~~~p~~~~l~~--------------~~~~-~-~~-~~~~~~~--~~~r~~i~~~~~~lAi~iP~~~~v~~  140 (238)
                      ..+...+++.+.++.+.....              ...+ + .+ ++..+.+  .......++.....+...|..+.+++
T Consensus       279 ~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~  358 (415)
T COG0814         279 INSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIA  358 (415)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            444446666666666543222              2221 1 11 1122333  34445555567777889999999999


Q ss_pred             HhhhHHhhHHHHHHhHHHHHHHhccCCCCCcchHHHHhHHHHHHHHHHHHHhHHHH
Q psy16729        141 LIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRVWKNILVLIFGVLALVFGTQTS  196 (238)
Q Consensus       141 lvGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~~~~~~~ii~~Gi~~~v~gt~~s  196 (238)
                      .+|+.....+.++.|...+.+....+.+   +.++...++++++|+..+..-.+..
T Consensus       359 ~iga~i~~~ll~~~p~~~~~~~~~~~~~---~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         359 TIGAPIIPALLFIKPRKLIYKLPALKVY---GGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeec---CCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988766543321   1111467888888988877665544

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.68  E-value=2.2e-07  Score=83.35  Aligned_cols=156  Identities=12%  Similarity=0.039  Sum_probs=109.8

Q ss_pred             ccccceeeccchhhcCCC-CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh-------------CCCCCC
Q psy16729          4 GHLPDSQVMPLENNMQTP-NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITY-------------NLPQHE   69 (238)
Q Consensus         4 af~g~~~~~~i~~~mk~p-~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~-------------n~~~~~   69 (238)
                      +|+.|..++++.++++|| |+.+|   ....+..+++++|..+........+.+.-.+...             +.-.+.
T Consensus       190 ~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~  266 (381)
T TIGR00837       190 SFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSS  266 (381)
T ss_pred             HHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccch
Confidence            465667799999999755 45555   5779999999999988766665554322111111             111122


Q ss_pred             cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChh-HHHhHhhhHHhh
Q psy16729         70 IAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIG-PFLGLIGAFCFS  148 (238)
Q Consensus        70 ~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~-~v~~lvGa~~~~  148 (238)
                      +...+..++-.+.+..++.-.....+|.+.+.+.++.+++   +|.....+..+...++|.+.|+.. ..++..| +...
T Consensus       267 ~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~---~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~  342 (381)
T TIGR00837       267 AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKK---GRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAAT  342 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC---CCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHH
Confidence            3456677777788888888888888888776665433222   234455666677888899999977 8999999 7788


Q ss_pred             HHHHHHhHHHHHHHhccC
Q psy16729        149 LLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       149 ~l~fi~P~l~yl~~~~~~  166 (238)
                      .+.+++|++++++.++++
T Consensus       343 ~~~~~~p~l~~~~~r~~~  360 (381)
T TIGR00837       343 IWAVIIPALLAWKARKKF  360 (381)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            899999999999987653

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.47  E-value=3.7e-06  Score=76.09  Aligned_cols=179  Identities=17%  Similarity=0.155  Sum_probs=117.2

Q ss_pred             CcccccceeeccchhhcC-CCCCCccccchhhHHHHHHHHHHHHH--HHHH---------HHHhcCCchh--hhhhCCCC
Q psy16729          2 ANGHLPDSQVMPLENNMQ-TPNHFVGLCGVLNQGMGGVTMIYILL--GFLG---------YLKYGELTED--NITYNLPQ   67 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk-~p~~~~~~~~v~~~a~~~~~~~Y~~~--g~~g---------Y~~fG~~~~~--~il~n~~~   67 (238)
                      .++|.-|.++|++.+.++ |++|.++   .......+..++|...  .+.|         -..-|+++.+  ..+.+..+
T Consensus       194 ~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (394)
T PF03222_consen  194 VFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSG  270 (394)
T ss_pred             HHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcC
Confidence            367888999999999998 4556665   4667777777788764  3333         1122222221  23334443


Q ss_pred             CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729         68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC  146 (238)
Q Consensus        68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~  146 (238)
                      +.+....+.++-.+++.+||-=...-.+|.+.+.++.+.   ....|............++|...|+ |...+++.| ..
T Consensus       271 s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~---~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~  346 (394)
T PF03222_consen  271 SPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN---NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IG  346 (394)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HH
Confidence            445566678888888888887777777888877765421   1223333444455667888998886 778999999 88


Q ss_pred             hhHHHHHHhHHHHHHHhccCCCCCcchH----HHHhHHHHHHHHHHH
Q psy16729        147 FSLLGLIFPVLIEFVTYWDVGFGPGNWR----VWKNILVLIFGVLAL  189 (238)
Q Consensus       147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~~----~~~~~~ii~~Gi~~~  189 (238)
                      ...+..++|.++.+|.+++++..  +|+    +....+++++|++..
T Consensus       347 ~~il~~ilP~~m~~~~r~~~~~~--~~~~~gg~~~l~~~~~~~i~ii  391 (394)
T PF03222_consen  347 IAILLGILPALMVWKARKRKPKQ--PYRVPGGNFTLLLVIIFGILII  391 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCC--CeEEeCcHHHHHHHHHHHHHHH
Confidence            88999999999999988765422  232    344455555555443

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.02  E-value=9.8e-05  Score=67.02  Aligned_cols=183  Identities=12%  Similarity=0.042  Sum_probs=119.3

Q ss_pred             CcccccceeeccchhhcCCC-CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc----------hhhhhhCC---CC
Q psy16729          2 ANGHLPDSQVMPLENNMQTP-NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT----------EDNITYNL---PQ   67 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p-~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~----------~~~il~n~---~~   67 (238)
                      .++|.=|+.+|++.+.+++. ++.+|   +......+..++|+..=......-+.+.          .++++..+   .+
T Consensus       191 ~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  267 (403)
T PRK15132        191 FTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVA  267 (403)
T ss_pred             HHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHcc
Confidence            46888899999999998754 45555   5677888888888775444443333221          01222222   22


Q ss_pred             CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729         68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC  146 (238)
Q Consensus        68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~  146 (238)
                      +.+...++.+.-.+++..||-=......|.+.+.++++.+   ...|........+..+++|+..|+ |....++.|.. 
T Consensus       268 ~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~---~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-  343 (403)
T PRK15132        268 SPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT---VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-  343 (403)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc---ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-
Confidence            3455566777777788888776666777888777654322   123555566777888999999997 67788888865 


Q ss_pred             hhHHHHHHhHHHHHHHhccCCCCCcch--HHHHhHHHHHHHHHHHHH
Q psy16729        147 FSLLGLIFPVLIEFVTYWDVGFGPGNW--RVWKNILVLIFGVLALVF  191 (238)
Q Consensus       147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~--~~~~~~~ii~~Gi~~~v~  191 (238)
                      ...+.+++|.++-+|.++++..+..|-  .+...++.+++|++..+.
T Consensus       344 ~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~  390 (403)
T PRK15132        344 LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI  390 (403)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence            678999999999999876541111110  245566666677665543

>PRK10483 tryptophan permease; Provisional

Probab=97.88  E-value=0.00028  Score=64.12  Aligned_cols=157  Identities=12%  Similarity=0.053  Sum_probs=105.8

Q ss_pred             CcccccceeeccchhhcCC-CCCCccccchhhHHHHHHHHHHHHH--HHHHHH---------HhcCCchh--hhhhCCCC
Q psy16729          2 ANGHLPDSQVMPLENNMQT-PNHFVGLCGVLNQGMGGVTMIYILL--GFLGYL---------KYGELTED--NITYNLPQ   67 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~-p~~~~~~~~v~~~a~~~~~~~Y~~~--g~~gY~---------~fG~~~~~--~il~n~~~   67 (238)
                      .++|.=|+.+|++.+.+++ +++.++   +......+..++|+.-  .+.|-.         .-|+++..  +.+.+..+
T Consensus       202 ~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~  278 (414)
T PRK10483        202 LASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLN  278 (414)
T ss_pred             HhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcC
Confidence            4678889999999999885 455555   6778888888888873  333311         12333211  11112222


Q ss_pred             CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729         68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC  146 (238)
Q Consensus        68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~  146 (238)
                      +.....+..++-.+++..||-=...-..|.+.+.++.+.+   ...|.....+..+-..++|...|+ |-.-+++.|.. 
T Consensus       279 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~---~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-  354 (414)
T PRK10483        279 SRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS---AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-  354 (414)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-
Confidence            2344566777777788888876666777888777654332   123333444566778899999998 77899999977 


Q ss_pred             hhHHHHHHhHHHHHHHhcc
Q psy16729        147 FSLLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       147 ~~~l~fi~P~l~yl~~~~~  165 (238)
                      ...+.-++|+++-++.+|+
T Consensus       355 ~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        355 ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            5677789999999999865

>TIGR00814 stp serine transporter

Probab=97.67  E-value=0.00018  Score=65.17  Aligned_cols=177  Identities=12%  Similarity=0.080  Sum_probs=112.9

Q ss_pred             Ccccccceeeccchhh----cCCC----CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh-------hhhh---
Q psy16729          2 ANGHLPDSQVMPLENN----MQTP----NHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED-------NITY---   63 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~----mk~p----~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~-------~il~---   63 (238)
                      .++|.+|+.+++...+    .++|    +|.++   +...+..+..++|+..-+..-...+.+.-.       +++.   
T Consensus       196 ~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k---~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~  272 (397)
T TIGR00814       196 VFSFNHSPIISSFAISYREEYGDKEFAERKCLR---IMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLA  272 (397)
T ss_pred             HHHHHccccchHHHHHHHHHcCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHH
Confidence            4789999999999733    3323    23333   577888888888887766666666543211       1111   


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----CcchhHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy16729         64 NLPQHEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPF  138 (238)
Q Consensus        64 n~~~~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v  138 (238)
                      |-.+......+..+.-.+++..||-=...-.+|.+...+.+. .+    ..++........++.+.++.+|..-|++-++
T Consensus       273 ~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~  352 (397)
T TIGR00814       273 NHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSF  352 (397)
T ss_pred             hhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            111223444556666667788888877778888888776321 11    1233445677778888999999999999999


Q ss_pred             HhHhhhHHhhHHHHHHhHHHHHHHhccCCCCCcchHH-HHhHHHHHHHH
Q psy16729        139 LGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRV-WKNILVLIFGV  186 (238)
Q Consensus       139 ~~lvGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~~-~~~~~ii~~Gi  186 (238)
                      +.-+|+-....+.|++|...-.|.-.-     +++|. ..++++++.|+
T Consensus       353 i~~~~gp~~a~i~~~~p~~~~~~v~~l-----~~~~~~~~~~fv~~~g~  396 (397)
T TIGR00814       353 IEALGGPIIAMILFLMPMYAIYKVPAL-----KKYRGRISNVFVTVIGL  396 (397)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHccHHH-----HHhCCCcchheeEeeec
Confidence            996666555678889999876665321     22332 34666666554

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=97.66  E-value=0.00087  Score=60.97  Aligned_cols=178  Identities=12%  Similarity=0.089  Sum_probs=112.0

Q ss_pred             cccccceeeccchhhcCCC-CCCccccchhhHHHHHHHHHHHH--HHHHH---------HHHhcCCchhhhh---hCCCC
Q psy16729          3 NGHLPDSQVMPLENNMQTP-NHFVGLCGVLNQGMGGVTMIYIL--LGFLG---------YLKYGELTEDNIT---YNLPQ   67 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p-~~~~~~~~v~~~a~~~~~~~Y~~--~g~~g---------Y~~fG~~~~~~il---~n~~~   67 (238)
                      ++|.=|+.+|++.+.+++. ++.++   .......+..++|..  .++.|         -...|+++..-+.   .+ .+
T Consensus       204 ~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~  279 (415)
T PRK09664        204 ASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQ  279 (415)
T ss_pred             HhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-cc
Confidence            4676699999999998754 45555   345666666667754  33333         1223333333111   22 22


Q ss_pred             CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCC-hhHHHhHhhhHH
Q psy16729         68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPT-IGPFLGLIGAFC  146 (238)
Q Consensus        68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~-~~~v~~lvGa~~  146 (238)
                      +.+......+.-.+++..||-=......|.+.+.++.+..+   ..|.....+..+-..++|...|+ |-.-++..|.. 
T Consensus       280 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~~---~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-  355 (415)
T PRK09664        280 HGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSH---GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-  355 (415)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-
Confidence            34556677777778888888766667778887776443221   23333444566778899999998 88899999997 


Q ss_pred             hhHHHHHHhHHHHHHHhccCCCCCcchH----HHHhHHHHHHHHHHHH
Q psy16729        147 FSLLGLIFPVLIEFVTYWDVGFGPGNWR----VWKNILVLIFGVLALV  190 (238)
Q Consensus       147 ~~~l~fi~P~l~yl~~~~~~~~~~~~~~----~~~~~~ii~~Gi~~~v  190 (238)
                      ...+.-++|+++-++.+++..  ...++    +..-.+.+++|++..+
T Consensus       356 ~~il~~ilP~lM~~~~Rk~~~--~~~y~v~GG~~~l~~~~~~g~~ii~  401 (415)
T PRK09664        356 ATIWAVIIPAVLAIKARKKFP--NQMFTVWGGNLIPAIVILFGITVIL  401 (415)
T ss_pred             HHHHHHHHHHHHHHHHhcccC--CCCceeeCCHHHHHHHHHHHHHHHH
Confidence            567888999999999986521  11122    3445555556655543

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.60  E-value=0.0042  Score=57.48  Aligned_cols=49  Identities=8%  Similarity=-0.028  Sum_probs=37.2

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG   54 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG   54 (238)
                      ++|.|-......-+|+|||+ +.++   ....+..++.++|......-....+
T Consensus       205 ~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       205 LFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence            57788888888889999997 5776   5778889999999876655443333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.57  E-value=0.0014  Score=59.99  Aligned_cols=183  Identities=13%  Similarity=0.079  Sum_probs=116.3

Q ss_pred             CcccccceeeccchhhcCC-----------CCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCch-----h--hhh-
Q psy16729          2 ANGHLPDSQVMPLENNMQT-----------PNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTE-----D--NIT-   62 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~-----------p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~-----~--~il-   62 (238)
                      .++|.=|+.+|++...+|+           ++|.++   ++..+..+..++|+..-+.+-..-+++.-     .  +++ 
T Consensus       219 v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r---ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls  295 (443)
T PRK13629        219 VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ---IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLS  295 (443)
T ss_pred             HHHHhccccchHHHHHHHHHhccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHH
Confidence            4678778999998888422           223333   67788888888888766655555543220     1  111 


Q ss_pred             ---hCCCCC--------CcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhc---cCC---CcchhHHHHHHHHHHHHH
Q psy16729         63 ---YNLPQH--------EIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKD---NFV---KKPKFYEYIVRTVIVTAA  125 (238)
Q Consensus        63 ---~n~~~~--------~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~---~~~---~~~~~~~~~~r~~i~~~~  125 (238)
                         +.+++.        ........+.-.+++..||-=...-.+|.+...+.+   +.+   ...+..+....+.+.+.+
T Consensus       296 ~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (443)
T PRK13629        296 YLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGST  375 (443)
T ss_pred             HHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHH
Confidence               112221        123445556666677778776666778888777732   111   122344667778888899


Q ss_pred             HHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHHHHhccCCCCCcchH-HHHhHHHHHHHHHHHHHh
Q psy16729        126 VGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWR-VWKNILVLIFGVLALVFG  192 (238)
Q Consensus       126 ~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~-~~~~~~ii~~Gi~~~v~g  192 (238)
                      +.+|+.-|++-+++.-+|+-....+.|++|...-.|.-.-     +++| +..++++++.|++....-
T Consensus       376 w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l-----~~yr~~~~n~fv~~~Gl~~i~~~  438 (443)
T PRK13629        376 WVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL-----AKYRGRLDNVFVTVIGLLTILNI  438 (443)
T ss_pred             HHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH-----HHhCCCchhHHHHHHHHHHHHHH
Confidence            9999999999999996666666778889999876665321     2233 234788888887765443

>PRK10655 potE putrescine transporter; Provisional

Probab=97.32  E-value=0.023  Score=51.93  Aligned_cols=46  Identities=15%  Similarity=0.112  Sum_probs=37.3

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      .|+|.|-......-+|+|||+ +.++   .+..+..++.++|........
T Consensus       199 ~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        199 LWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            367888888899999999997 6777   577999999999988765443

>TIGR00909 2A0306 amino acid transporter

Probab=97.26  E-value=0.013  Score=53.36  Aligned_cols=155  Identities=10%  Similarity=0.057  Sum_probs=79.7

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC-c-h-----hhhhhCCCCCCcHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL-T-E-----DNITYNLPQHEIAPQI   74 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~-~-~-----~~il~n~~~~~~~~~i   74 (238)
                      |+|.|........+|+|||+ +.+|   ....+..++.++|.............+ . +     ..+..+.. .++...+
T Consensus       206 ~af~G~e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  281 (429)
T TIGR00909       206 FAFIGFEAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLI  281 (429)
T ss_pred             HHHhhHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHH
Confidence            57778888889999999996 5566   467899999999998865544221110 0 0     01111111 1233344


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC--------CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhH
Q psy16729         75 ANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV--------KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAF  145 (238)
Q Consensus        75 ~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~--------~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~  145 (238)
                      ..+...+..+.+.--.+....+.+...-+++ .|        +.+...+.++-..  +++.++ ....+++.+.++.+  
T Consensus       282 ~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~~-~~~~~~~~l~~~~~--  356 (429)
T TIGR00909       282 LTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAALL-ASLVPLEGLAELTS--  356 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHHH-HHHcCHHHHHHHHH--
Confidence            5555555555555444433434444333222 22        1111122111111  111111 23355777766543  


Q ss_pred             HhhHHHHHHhHHHHHHHhccC
Q psy16729        146 CFSLLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       146 ~~~~l~fi~P~l~yl~~~~~~  166 (238)
                      ....+.|++.++-.+++++++
T Consensus       357 ~~~~~~y~~~~~a~~~lr~~~  377 (429)
T TIGR00909       357 IGTLIAFAAVNVAVIILRRRR  377 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            223577777777776666544

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.20  E-value=0.031  Score=51.31  Aligned_cols=45  Identities=9%  Similarity=-0.020  Sum_probs=36.9

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      |+|.|-......-+|+|||+ +.++   ....+..++.++|..+...-.
T Consensus       202 ~af~G~e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~~~  247 (445)
T PRK10644        202 WSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTAIM  247 (445)
T ss_pred             HHHHhHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence            67778888889999999996 5776   577899999999998876633

>TIGR00908 2A0305 ethanolamine permease

Probab=97.15  E-value=0.015  Score=53.18  Aligned_cols=42  Identities=10%  Similarity=-0.084  Sum_probs=32.3

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF   47 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~   47 (238)
                      |+|.|.......-+|+|||+ +.++   ....+..++.++|...-.
T Consensus       202 ~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       202 WFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence            57778888888999999996 5676   466788878888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.12  E-value=0.03  Score=51.73  Aligned_cols=158  Identities=12%  Similarity=0.081  Sum_probs=80.4

Q ss_pred             cccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc----h----hhhhhCCCCCCcHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT----E----DNITYNLPQHEIAPQI   74 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~----~----~~il~n~~~~~~~~~i   74 (238)
                      |+|.|-.....+.+|.|||++.++   ....+...+.++|..+.+..+...+++.    +    ..+.++.-. ++...+
T Consensus       206 ~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g-~~~~~~  281 (468)
T TIGR03810       206 WVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVG-TWGAVL  281 (468)
T ss_pred             HHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcc-hHHHHH
Confidence            556666666677788998888887   4678999999999998776554333211    0    111112211 223344


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHhhhhc-cCC-------CcchhHHHH-HHHHHHHHHHHHHH-hcCChhHHHhHhhh
Q psy16729         75 ANIAIGIAVFCTFGLQFFVCLEIVWNGVKD-NFV-------KKPKFYEYI-VRTVIVTAAVGLAV-AVPTIGPFLGLIGA  144 (238)
Q Consensus        75 ~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~-~~~-------~~~~~~~~~-~r~~i~~~~~~lAi-~iP~~~~v~~lvGa  144 (238)
                      ..+...++.+.+.--.+...-+.+...-++ ..|       ++....+.+ +..++..+..++.. .-+.++.+.++.+.
T Consensus       282 i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~  361 (468)
T TIGR03810       282 INIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS  361 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            555555555555444333333444333222 122       111122222 22222111111111 11235555554432


Q ss_pred             HHhhHHHHHHhHHHHHHHhccC
Q psy16729        145 FCFSLLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       145 ~~~~~l~fi~P~l~yl~~~~~~  166 (238)
                        ...+.|.++++.++++++++
T Consensus       362 --~~li~y~~~~~~~~~l~~~~  381 (468)
T TIGR03810       362 --AILVPYLWSAAYQVKLSWRG  381 (468)
T ss_pred             --HHHHHHHHHHHHHHHHHHhc
Confidence              35688999999998887554

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=96.80  E-value=0.04  Score=49.96  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=89.7

Q ss_pred             CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh---hh---h----hCCCCCCcH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED---NI---T----YNLPQHEIA   71 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~---~i---l----~n~~~~~~~   71 (238)
                      .|+|.|-.......+|+|| |+.++   ....+..++.++|......-....+++..+   +.   .    +... .++.
T Consensus       198 ~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  272 (426)
T PF13520_consen  198 FFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWL  272 (426)
T ss_dssp             GGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTH
T ss_pred             Hhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-cccc
Confidence            4788899999999999998 67777   577999999999999877666555543211   11   1    1111 2355


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----CcchhH-HHHHHHHHHHHHHHHHH---hcC--ChhHHHh
Q psy16729         72 PQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----KKPKFY-EYIVRTVIVTAAVGLAV---AVP--TIGPFLG  140 (238)
Q Consensus        72 ~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~~~~~~-~~~~r~~i~~~~~~lAi---~iP--~~~~v~~  140 (238)
                      ..+..+...+..+.+....+....+.+...-+++ .|    +.++.+ -...-....+++.++..   ..|  +++.+.+
T Consensus       273 ~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~  352 (426)
T PF13520_consen  273 AIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVS  352 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHH
T ss_pred             ccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            5666666666666666666655556665555433 22    111111 01111122222222222   234  3445555


Q ss_pred             HhhhHHhhHHHHHHhHHHHHHHhccC
Q psy16729        141 LIGAFCFSLLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       141 lvGa~~~~~l~fi~P~l~yl~~~~~~  166 (238)
                      +. ++ ...+.++++.+.+++.++++
T Consensus       353 ~~-~~-~~~~~~~~~~~~~~~~~~~~  376 (426)
T PF13520_consen  353 LS-SV-GYLISYILVILAVLFLRRKR  376 (426)
T ss_dssp             HH-HH-HTHHHHHHHHHHHHHTHHHS
T ss_pred             HH-HH-HHHHHHHHHHHHHHHHhhhc
Confidence            33 33 34577888888888776654

...

>PRK10249 phenylalanine transporter; Provisional

Probab=96.76  E-value=0.055  Score=49.93  Aligned_cols=45  Identities=11%  Similarity=-0.034  Sum_probs=34.4

Q ss_pred             CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLG   49 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~g   49 (238)
                      .|+|.|-......-+|+|||+| .++   ....+...+.++|......-
T Consensus       219 ~~af~G~e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        219 MFSFGGLELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             HHHHcCHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3678888888899999999974 666   46678888888887754443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=96.74  E-value=0.052  Score=50.21  Aligned_cols=46  Identities=2%  Similarity=-0.015  Sum_probs=36.0

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      .|+|.|-......-+|+|||+ +.++   ....+..++.++|.......-
T Consensus       216 ~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~~  262 (471)
T PRK11387        216 NFAFSGTELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVLA  262 (471)
T ss_pred             HHHHcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            367888888899999999997 4666   466888888888988765443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=96.72  E-value=0.074  Score=48.92  Aligned_cols=158  Identities=12%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCc-h-------hhhhhCCCCCCcHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELT-E-------DNITYNLPQHEIAP   72 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~-~-------~~il~n~~~~~~~~   72 (238)
                      .|+|.|-.......+|+|||+| .++   ....+...+.++|......--.....+. +       ....+.... ....
T Consensus       191 ~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~  266 (446)
T PRK10197        191 MFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAK  266 (446)
T ss_pred             HHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHH
Confidence            3678888888899999999974 666   4567888888888886554322221111 0       012222321 2233


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHHHHHHH-HHHHHHHHHHHhcC--ChhHHHhH
Q psy16729         73 QIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYEYIVRT-VIVTAAVGLAVAVP--TIGPFLGL  141 (238)
Q Consensus        73 ~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~~~~r~-~i~~~~~~lAi~iP--~~~~v~~l  141 (238)
                      .+.++...+..+.+.--.+....+.+...-+++ .|       ++....+.++-. ++..+..+.....|  .++.++++
T Consensus       267 ~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~  346 (446)
T PRK10197        267 LIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDS  346 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            445555555555555444444445554443322 22       111122222222 22222222222223  36667776


Q ss_pred             hhhHHhhHHHHHHhHHHHHHHhcc
Q psy16729        142 IGAFCFSLLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       142 vGa~~~~~l~fi~P~l~yl~~~~~  165 (238)
                      .+...  .+.++++++-+++++++
T Consensus       347 ~~~~~--li~y~~~~~a~i~lr~~  368 (446)
T PRK10197        347 SGAIA--LLVYLVIAVSQLRMRKI  368 (446)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHH
Confidence            65554  48888898888887653

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=96.69  E-value=0.073  Score=49.84  Aligned_cols=41  Identities=10%  Similarity=0.045  Sum_probs=31.4

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLG   46 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g   46 (238)
                      |+|.|--.....-+|+|||+ ++++   .+..+..++.++|....
T Consensus       205 faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       205 GAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence            46777778888999999997 5777   46677777788886543

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10746 putative transport protein YifK; Provisional

Probab=96.65  E-value=0.076  Score=49.09  Aligned_cols=161  Identities=8%  Similarity=0.047  Sum_probs=83.8

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC-ch---h---hhhhCCCCCCcHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL-TE---D---NITYNLPQHEIAPQ   73 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~-~~---~---~il~n~~~~~~~~~   73 (238)
                      .|+|.|...+...-+|+|||+ +.++   ....+...+.++|.......-.....+ ..   +   ....+... .....
T Consensus       210 ~faf~G~e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~  285 (461)
T PRK10746        210 VASYQGVELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAG  285 (461)
T ss_pred             HHHhcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHH
Confidence            367888888889999999996 6666   456667777777877543332222211 10   0   01111111 12234


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHH-HHHHHHHHHHHHHHHHhcCChhHHHhHhhh
Q psy16729         74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYE-YIVRTVIVTAAVGLAVAVPTIGPFLGLIGA  144 (238)
Q Consensus        74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~-~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa  144 (238)
                      +.++...+..+.+.--.++...+.+...-+++ .|       ++....+ .++......+...+....|+-+.+++.+-+
T Consensus       286 i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~  365 (461)
T PRK10746        286 IINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYS  365 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44555555555554444444445554443322 22       1111122 222222222333344456766666665544


Q ss_pred             HHh--hHHHHHHhHHHHHHHhccC
Q psy16729        145 FCF--SLLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       145 ~~~--~~l~fi~P~l~yl~~~~~~  166 (238)
                      +++  ..+.++++++.|++.++++
T Consensus       366 ~~~~~~~i~w~~i~~~~i~~r~~~  389 (461)
T PRK10746        366 ASVLPGMVPWFVILISQLRFRRAH  389 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333  4688899999999887654

>PRK11021 putative transporter; Provisional

Probab=96.65  E-value=0.23  Score=44.94  Aligned_cols=156  Identities=12%  Similarity=0.092  Sum_probs=80.4

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHH--HHHhcCCchh-----hhhhCC-CCCCcHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLG--YLKYGELTED-----NITYNL-PQHEIAPQ   73 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~g--Y~~fG~~~~~-----~il~n~-~~~~~~~~   73 (238)
                      |+|.|.......-+|+|||+ +.++   ....+..++.++|......-  ...++|...+     .+.+.. .+  +...
T Consensus       188 ~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~  262 (410)
T PRK11021        188 WCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGG--YALW  262 (410)
T ss_pred             HHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCc--hhHH
Confidence            67888889999999999996 6777   57799999999999976542  2222332111     111111 11  1122


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhc-cCC-------CcchhHHH-HHHHHHHHHHHHHH-HhcCChhHHHhHhh
Q psy16729         74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKD-NFV-------KKPKFYEY-IVRTVIVTAAVGLA-VAVPTIGPFLGLIG  143 (238)
Q Consensus        74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~-~~~-------~~~~~~~~-~~r~~i~~~~~~lA-i~iP~~~~v~~lvG  143 (238)
                      +..+...+..+.+.-..+....+.+...-++ ..|       +++...+. ++...+.....++. ..-.+++++.++..
T Consensus       263 ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~  342 (410)
T PRK11021        263 VICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN  342 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            2333333333333332222223333333222 122       11112222 22222222222222 23457888777654


Q ss_pred             hHHhhHHHHHHhHHHHHHHhcc
Q psy16729        144 AFCFSLLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       144 a~~~~~l~fi~P~l~yl~~~~~  165 (238)
                        ....+.|.++++-.+++.++
T Consensus       343 --~~~li~y~~~~~a~~~l~~~  362 (410)
T PRK11021        343 --GIFVLIYLLCMLAACKLLKG  362 (410)
T ss_pred             --HHHHHHHHHHHHHHHHHhcc
Confidence              33568888888888887654

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=96.64  E-value=0.11  Score=48.15  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF   47 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~   47 (238)
                      .|+|.|-......-+|+|||+ +.++   ....+..++.++|.....
T Consensus       207 ~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       207 AFSFGGTELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HhhhccHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence            367888888889999999997 5666   567888889999998654

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.64  E-value=0.14  Score=46.78  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=40.3

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGE   55 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~   55 (238)
                      ++|.|-....+.-+|+|||+ +.++   ....+...+.++|......-....++
T Consensus       212 ~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         212 FAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            67888888889999999995 5576   46788889999999988777766664

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=96.61  E-value=0.19  Score=46.56  Aligned_cols=49  Identities=4%  Similarity=-0.001  Sum_probs=32.8

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG   54 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG   54 (238)
                      |+|.|.......-+|+|||+ +.++   ....+..++.+++....+.-+...+
T Consensus       228 fsf~G~e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       228 WSMTGYDGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             HHhcCcchhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            67889889999999999997 5666   4556666665554443333333333

>PRK15049 L-asparagine permease; Provisional

Probab=96.59  E-value=0.066  Score=50.05  Aligned_cols=158  Identities=12%  Similarity=0.058  Sum_probs=80.8

Q ss_pred             CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCC-ch---h---hhhhCCCCCCcHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL-TE---D---NITYNLPQHEIAPQ   73 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~-~~---~---~il~n~~~~~~~~~   73 (238)
                      .|+|.|-..+...-+|+|||+| .++   ....++..+.++|...........+.+ ..   +   .+...... .+...
T Consensus       230 ~faf~G~e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~-~~~~~  305 (499)
T PRK15049        230 VFAFASIEMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV-PYIGS  305 (499)
T ss_pred             HHHHhhHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCc-hhHHH
Confidence            3678888888899999999975 666   466777777777877655443333211 11   1   11111111 12334


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHHH-HHHHHHHHHHHHHHHhcCC--hhHHHhHh
Q psy16729         74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYEY-IVRTVIVTAAVGLAVAVPT--IGPFLGLI  142 (238)
Q Consensus        74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~~-~~r~~i~~~~~~lAi~iP~--~~~v~~lv  142 (238)
                      +..+...+..+.+.--.++..-+.+...-+++ .|       ++....+. ++..++..+..++....|.  ++.++++.
T Consensus       306 ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~  385 (499)
T PRK15049        306 IMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFA  385 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            44455555555444333344444444443322 22       11112222 2222222222222223332  44555554


Q ss_pred             hhHHhhHHHHHHhHHHHHHHhcc
Q psy16729        143 GAFCFSLLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       143 Ga~~~~~l~fi~P~l~yl~~~~~  165 (238)
                      +  .+..+.|++|++.+++.+++
T Consensus       386 ~--~~~li~y~~~~~~~l~~R~~  406 (499)
T PRK15049        386 S--LGIIASWAFIIVCQMRLRKA  406 (499)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHh
Confidence            3  34578999999999888653

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=96.51  E-value=0.059  Score=49.40  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFL   48 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~   48 (238)
                      |+|.|-......-+|+|||+ +.++   ....+..++.++|......
T Consensus       206 ~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        206 WSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHH
Confidence            67888888899999999997 4566   5778999999999887654

>KOG1287|consensus

Probab=96.44  E-value=0.04  Score=50.84  Aligned_cols=158  Identities=9%  Similarity=0.083  Sum_probs=96.1

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhCC------CC--CCcHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNL------PQ--HEIAPQ   73 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n~------~~--~~~~~~   73 (238)
                      |+|.|=..+=.+-+|+|||+ ..++   ....++.+++++|..+=+..+   +--..++++.+-      .+  -+.+..
T Consensus       215 fa~~GWd~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~---~vls~~e~l~S~aVav~Fa~~~~G~~~~  288 (479)
T KOG1287|consen  215 FAFSGWDYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYF---TVLSPDEILSSDAVAVTFADRILGVFAW  288 (479)
T ss_pred             hcccCchhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhhee---EecCHHHhcccchHHHHHHHHhccchHH
Confidence            56777777778889999996 6666   478999999999999754433   222233332211      00  011224


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhc-cCC----CcchhH-HHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHh
Q psy16729         74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKD-NFV----KKPKFY-EYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCF  147 (238)
Q Consensus        74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~-~~~----~~~~~~-~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~  147 (238)
                      +..+...++.+.+.--.++..-+.+....++ ..|    ..+.++ -=...+.+.....++..++.|++.+++.++=.-.
T Consensus       289 ~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~  368 (479)
T KOG1287|consen  289 AIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYW  368 (479)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4555555555555544455444444444333 233    011111 1122334444555566677899999999988888


Q ss_pred             hHHHHHHhHHHHHHHhccC
Q psy16729        148 SLLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       148 ~~l~fi~P~l~yl~~~~~~  166 (238)
                      ....+.+=+++|+|.++++
T Consensus       369 l~~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  369 LFRGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHHHHHHHHHhhCCC
Confidence            8888889999999987765

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=96.43  E-value=0.25  Score=45.78  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=34.8

Q ss_pred             cccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      |+|.|-......-+|+||+++.++   ....+..++.++|........
T Consensus       210 ~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       210 WVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence            566777777778899999667777   467899999999988766533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10836 lysine transporter; Provisional

Probab=96.41  E-value=0.18  Score=46.96  Aligned_cols=47  Identities=9%  Similarity=0.059  Sum_probs=36.9

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLK   52 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~   52 (238)
                      |+|.|-......-+|+|||+ +.++   ....+...+.++|......-...
T Consensus       216 faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~~~  263 (489)
T PRK10836        216 FSFQGTELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILIISLI  263 (489)
T ss_pred             HHHccHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHhee
Confidence            77888888889999999997 4566   46788899999999876554333

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=96.41  E-value=0.11  Score=48.12  Aligned_cols=45  Identities=11%  Similarity=0.067  Sum_probs=32.6

Q ss_pred             CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLG   49 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~g   49 (238)
                      .|+|.|-......-+|+|||+| .++   ....+...+.+.|......-
T Consensus       221 ~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~  266 (469)
T PRK11049        221 VFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVI  266 (469)
T ss_pred             HHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3678888888999999999974 666   34556666677777655444

>TIGR00911 2A0308 L-type amino acid transporter

Probab=96.32  E-value=0.075  Score=49.55  Aligned_cols=45  Identities=16%  Similarity=0.079  Sum_probs=36.3

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      |+|.|-.......+|+|||+ +.++   ....+..++.++|......-.
T Consensus       246 ~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       246 WAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888999999996 5666   577899999999999865443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=96.27  E-value=0.39  Score=43.91  Aligned_cols=45  Identities=13%  Similarity=0.028  Sum_probs=37.3

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      |+|.|.......-+|+|||+ +.++   ....+..++.++|........
T Consensus       198 faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        198 WAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             HHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888999999995 6887   577899999999999876544

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.20  E-value=0.21  Score=46.55  Aligned_cols=44  Identities=18%  Similarity=0.039  Sum_probs=35.0

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLG   49 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~g   49 (238)
                      |+|.|.......-+|+|||+ +.+|   ....+...+.++|.......
T Consensus       222 ~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~~  266 (496)
T PRK15238        222 FAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFLW  266 (496)
T ss_pred             HHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHHH
Confidence            67888888889999999997 5776   56788888889998864433

>PRK10238 aromatic amino acid transporter; Provisional

Probab=96.19  E-value=0.25  Score=45.56  Aligned_cols=158  Identities=12%  Similarity=0.087  Sum_probs=74.4

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHH--HHHhcCCc--hh---hhhhCCCCCCcHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLG--YLKYGELT--ED---NITYNLPQHEIAPQ   73 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~g--Y~~fG~~~--~~---~il~n~~~~~~~~~   73 (238)
                      .|+|.|.......-+|+|||+ +.++   ....+.....+.|...-...  .....|-.  .+   .+..+... .....
T Consensus       210 ~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~  285 (456)
T PRK10238        210 MFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVAN  285 (456)
T ss_pred             HHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHH
Confidence            367888888889999999997 4666   35555666666665532221  11111110  00   11122211 12233


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC-------CcchhHHHHH-HHHHHHHHHHHHHhcCC--hhHHHhHh
Q psy16729         74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV-------KKPKFYEYIV-RTVIVTAAVGLAVAVPT--IGPFLGLI  142 (238)
Q Consensus        74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~-------~~~~~~~~~~-r~~i~~~~~~lAi~iP~--~~~v~~lv  142 (238)
                      +.+....+..+.+.--.+....+.+...-+++ .|       ++....+.++ ..++..+..++....|+  ++.+.++.
T Consensus       286 i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~  365 (456)
T PRK10238        286 ALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV  365 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            34444444444443333344444444433221 22       1111222222 22222122222112232  44555553


Q ss_pred             hhHHhhHHHHHHhHHHHHHHhcc
Q psy16729        143 GAFCFSLLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       143 Ga~~~~~l~fi~P~l~yl~~~~~  165 (238)
                      +  .+..+.|.+|++.+++.+++
T Consensus       366 ~--~~~~i~y~~~~~~~l~~r~~  386 (456)
T PRK10238        366 V--SALVINWAMISLAHMKFRRA  386 (456)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHH
Confidence            3  34568999999999988764

>PRK10580 proY putative proline-specific permease; Provisional

Probab=96.10  E-value=0.25  Score=45.52  Aligned_cols=43  Identities=9%  Similarity=-0.001  Sum_probs=31.3

Q ss_pred             cccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFL   48 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~   48 (238)
                      |+|.|-......-+|+|||+| .++   ....+...+.++|......
T Consensus       210 fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        210 FAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            677888888889999999985 566   3446666667777766443

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.01  E-value=0.8  Score=42.41  Aligned_cols=50  Identities=8%  Similarity=-0.093  Sum_probs=35.4

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYG   54 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG   54 (238)
                      .|+|.|-.....+-+|+|||+ +.+|   .+..+..+..++|...-+......+
T Consensus       223 ~~~f~G~e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       223 AYVMVGFGSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHhcCcchHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            367888888999999999997 5666   4667777776666555544444444

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=96.00  E-value=0.14  Score=48.49  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=81.2

Q ss_pred             cccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhcCC---chh---hhhhCCCCCCcHHHHH
Q psy16729          3 NGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYGEL---TED---NITYNLPQHEIAPQIA   75 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~---~~~---~il~n~~~~~~~~~i~   75 (238)
                      |+|.|--.+.+.-+|.|||+| .++   ....+..+++++|..+...--..-..+   ..+   ....... .++...+.
T Consensus       242 faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii  317 (557)
T TIGR00906       242 FAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIV  317 (557)
T ss_pred             HHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHH
Confidence            677888888899999999975 776   578999999999998875533222211   011   1112211 12333444


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC--------CcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHH
Q psy16729         76 NIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV--------KKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFC  146 (238)
Q Consensus        76 ~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~--------~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~  146 (238)
                      .+...+.++.+.-..+...-+.+...-+++ .|        +.+...+..+-.  .+++.+++. +.+++.+.++..  .
T Consensus       318 ~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~--~iv~~il~~-~~~~~~l~~l~s--i  392 (557)
T TIGR00906       318 AVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVS--GAIAALMAF-LFDLKALVDLLS--I  392 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHH--HHHHHHHHH-HcCHHHHHHHHH--H
Confidence            444444444444444444444444443322 22        111112221111  122233333 335677766652  2


Q ss_pred             hhHHHHHHhHHHHHHHhcc
Q psy16729        147 FSLLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       147 ~~~l~fi~P~l~yl~~~~~  165 (238)
                      +..+.|+++++..+.++++
T Consensus       393 g~ll~y~lv~~~~l~lR~~  411 (557)
T TIGR00906       393 GTLLAYSLVAACVLILRYQ  411 (557)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            3468889988877776643

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=95.97  E-value=0.23  Score=45.63  Aligned_cols=46  Identities=11%  Similarity=0.050  Sum_probs=33.8

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGY   50 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY   50 (238)
                      .|+|.|......+-+|+|||+ +.++   ....+.....++|........
T Consensus       211 ~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       211 MFSFMGTEIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHhccHHHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence            367888888899999999997 5666   355667777788887644333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00930 2a30 K-Cl cotransporter

Probab=94.25  E-value=0.89  Score=46.00  Aligned_cols=41  Identities=7%  Similarity=-0.027  Sum_probs=31.8

Q ss_pred             ccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHH
Q psy16729          4 GHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGF   47 (238)
Q Consensus         4 af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~   47 (238)
                      ||.|.-....+-.|+|||+ ..++   ....++.+++++|+.+.+
T Consensus       292 A~tGi~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~  333 (953)
T TIGR00930       292 SVTGILAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVV  333 (953)
T ss_pred             HHHHHHHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHH
Confidence            4455555566889999997 5666   467999999999999875

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=93.41  E-value=1.1  Score=39.61  Aligned_cols=153  Identities=10%  Similarity=0.082  Sum_probs=83.4

Q ss_pred             CcccccceeeccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchhhh-------hhCCCCCCc---H
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNI-------TYNLPQHEI---A   71 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~~i-------l~n~~~~~~---~   71 (238)
                      .++|.|...+.-...++|||++.+|   ....+..++.++|...-...-..+|.+..++.       .+..+-.+.   .
T Consensus       189 ~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~  265 (359)
T TIGR00912       189 TFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERF  265 (359)
T ss_pred             hhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHH
Confidence            4677787777888889999988877   56789999999999988888888885433221       111111111   1


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhh---HHhh
Q psy16729         72 PQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGA---FCFS  148 (238)
Q Consensus        72 ~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa---~~~~  148 (238)
                      -.+.-.......+...-+.++.....+.+.++.+.     .+....-.+.  ....++ ..|+-.+.......   ..+.
T Consensus       266 e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~  337 (359)
T TIGR00912       266 ELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK-----YSILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAI  337 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----cchhHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHH
Confidence            11122223344555555666666666665544322     1112221221  222222 45653222323222   2334


Q ss_pred             HHHHHHhHHHHHHHhcc
Q psy16729        149 LLGLIFPVLIEFVTYWD  165 (238)
Q Consensus       149 ~l~fi~P~l~yl~~~~~  165 (238)
                      .+.+++|.++.+....|
T Consensus       338 ~~~~~~P~ll~~i~~ik  354 (359)
T TIGR00912       338 VFFLLLPLILFIIVKIK  354 (359)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56678899887665433

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=87.59  E-value=23  Score=32.54  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHHHHhccC--CCCCcchHHHHhHHHHHHHHHH
Q psy16729        111 KFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDV--GFGPGNWRVWKNILVLIFGVLA  188 (238)
Q Consensus       111 ~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl~~~~~~--~~~~~~~~~~~~~~ii~~Gi~~  188 (238)
                      +.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..+++.++...++.  ++..++|.....|...++=+..
T Consensus       324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L  403 (416)
T COG1914         324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVAL  403 (416)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHHH
Confidence            44667777666666565555444999999999999988887777777776655441  3334566666666555544333


Q ss_pred             H
Q psy16729        189 L  189 (238)
Q Consensus       189 ~  189 (238)
                      .
T Consensus       404 ~  404 (416)
T COG1914         404 N  404 (416)
T ss_pred             H
Confidence            3

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=86.52  E-value=5.5  Score=36.03  Aligned_cols=25  Identities=16%  Similarity=0.497  Sum_probs=17.4

Q ss_pred             ChhHHHhHhhhHHhhHHHHHHhHHHHHHH
Q psy16729        134 TIGPFLGLIGAFCFSLLGLIFPVLIEFVT  162 (238)
Q Consensus       134 ~~~~v~~lvGa~~~~~l~fi~P~l~yl~~  162 (238)
                      .++.++++    +...+.+++|..+-+.+
T Consensus       323 Gl~~Ii~~----~~PvL~~~YP~~i~lil  347 (378)
T TIGR00796       323 GLTQIISI----SIPVLMIIYPLAIVLIL  347 (378)
T ss_pred             CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            67777774    56677888888766544

transmembrane helical spanners.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=86.14  E-value=0.64  Score=42.98  Aligned_cols=51  Identities=10%  Similarity=0.061  Sum_probs=39.8

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGE   55 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~   55 (238)
                      .++|.|.......-+|.|||+ ..++   ....+.....++|.......=...|.
T Consensus       210 ~~af~G~e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  210 FFAFVGFESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             hcccccccccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccCc
Confidence            468889999999999999997 5666   46788888889998877655555553

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1286|consensus

Probab=84.49  E-value=6.1  Score=37.63  Aligned_cols=158  Identities=12%  Similarity=0.084  Sum_probs=87.3

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHH-hcCC--chhhh-----h---hCCCCCC
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLK-YGEL--TEDNI-----T---YNLPQHE   69 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~-fG~~--~~~~i-----l---~n~~~~~   69 (238)
                      +|+|.|.-.+-..-+|-|||+ ..++   ....++..++++|....+.-=+. =-++  ..++.     .   .+.+.-.
T Consensus       242 ~fsf~G~e~va~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k  318 (554)
T KOG1286|consen  242 FFSFIGFELVATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAK  318 (554)
T ss_pred             HHHHhhHHHHHHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCcc
Confidence            477888888888899999996 5665   57899999999999877532211 1111  11111     0   0111111


Q ss_pred             cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccC-C----CcchhHH-HHHHHHHHHHHHHHHHhcCC-----hhHH
Q psy16729         70 IAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNF-V----KKPKFYE-YIVRTVIVTAAVGLAVAVPT-----IGPF  138 (238)
Q Consensus        70 ~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~-~----~~~~~~~-~~~r~~i~~~~~~lAi~iP~-----~~~v  138 (238)
                      .+..+.+....+.++.+---.+++.-+.+..+.++.. |    +-+++.+ +.-..+..++..++++....     ++.+
T Consensus       319 ~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L  398 (554)
T KOG1286|consen  319 YLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWL  398 (554)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            2223666666666666655566677666666654332 2    1111122 22222333333333433332     5888


Q ss_pred             HhHhhhHHhhHHHHHHhHHHHHHHhc
Q psy16729        139 LGLIGAFCFSLLGLIFPVLIEFVTYW  164 (238)
Q Consensus       139 ~~lvGa~~~~~l~fi~P~l~yl~~~~  164 (238)
                      +++.|--  ..+++.+=++.|++.++
T Consensus       399 ~~~~si~--tl~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  399 VNLSSIG--TLFAWTLVALSHLRFRY  422 (554)
T ss_pred             HHHHhHH--HHHHHHHHHHHHeeeee
Confidence            8888644  45666666677766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.64
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	97.41
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.17

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.64  E-value=0.0011  Score=60.03  Aligned_cols=83  Identities=8%  Similarity=0.014  Sum_probs=55.5

Q ss_pred             cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh----------hhhhCCC-CCCc
Q psy16729          3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED----------NITYNLP-QHEI   70 (238)
Q Consensus         3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~----------~il~n~~-~~~~   70 (238)
                      |+|.|.......-+|+|||+ +.++   ....+..++.++|....+.-....+++...          .+..+.. ...+
T Consensus       212 ~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  288 (511)
T 4djk_A          212 LSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEW  288 (511)
T ss_dssp             HHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTT
T ss_pred             HHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchH
Confidence            67889999999999999997 4666   577899999999999888777666643211          1112222 0234


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy16729         71 APQIANIAIGIAVFCTFG   88 (238)
Q Consensus        71 ~~~i~~i~~~i~ll~s~p   88 (238)
                      ...+..+...+..+.+.-
T Consensus       289 ~~~~~~~~~~~~~~~~~~  306 (511)
T 4djk_A          289 TVRVISALLLLGVLAEIA  306 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555666666665555533

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=97.41  E-value=0.0012  Score=58.53  Aligned_cols=157  Identities=8%  Similarity=0.001  Sum_probs=85.4

Q ss_pred             CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh-------hhhhCCCCCCcHHH
Q psy16729          2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED-------NITYNLPQHEIAPQ   73 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~-------~il~n~~~~~~~~~   73 (238)
                      .|+|.|........+|+|||+ +.++   ....+..++.++|...........+.+...       ++.+... .++...
T Consensus       201 ~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~  276 (445)
T 3l1l_A          201 LWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGA  276 (445)
T ss_dssp             HHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHH
T ss_pred             HHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHH
Confidence            368899999999999999995 5666   467899999999999988777766643211       0111111 123334


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----C---cchhHHHHHHHHHHHHHHHHHH--hc----CChhHHH
Q psy16729         74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----K---KPKFYEYIVRTVIVTAAVGLAV--AV----PTIGPFL  139 (238)
Q Consensus        74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~---~~~~~~~~~r~~i~~~~~~lAi--~i----P~~~~v~  139 (238)
                      +..+...+..+.+.--.+....+.+...-+++ .|    +   +....+.++-...+  +.++.+  ..    ..++.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~l~  354 (445)
T 3l1l_A          277 IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGIL--MTIFQLSSISPNATKEFGLVS  354 (445)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHH--HHHHHHSTTSHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHH--HHHHHHHHHcccHHHHHHHHH
Confidence            44444444444443333333334443333221 12    1   11112222111111  222222  12    2355565


Q ss_pred             hHhhhHHhhHHHHHHhHHHHHHHhccC
Q psy16729        140 GLIGAFCFSLLGLIFPVLIEFVTYWDV  166 (238)
Q Consensus       140 ~lvGa~~~~~l~fi~P~l~yl~~~~~~  166 (238)
                      ++.+  ....+.|.++++.++++++++
T Consensus       355 ~~~~--~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          355 SVSV--IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            5554  335688999999999887665

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.17  E-value=0.002  Score=57.15  Aligned_cols=50  Identities=6%  Similarity=0.028  Sum_probs=40.8

Q ss_pred             CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729          2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYG   54 (238)
Q Consensus         2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG   54 (238)
                      .|+|.|........+|+|||+| .++   ....+..++.++|...........+
T Consensus       198 ~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          198 FLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             GGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999974 676   4678999999999988776555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00