Psyllid ID: psy16742

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620

MFCIAGHVHFKQHKFELTKEQKSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL

ccEEcccccccccHHHHHHHHHHHccccccccEEEccccccccccccccccHHHHHHHHHHHHcccccccccEEccccccHHHHHccccHHHHHHHHcccccHHHHHHccccccHHHHHHHHHccccHHHHHHcccccccccccccccEEEEEcHHHHHHHHHHHcccccEEEEcccccccccEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccHHHHHHccccEEEEEcccccccccccccccccHHHHccHHHcccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHcccccccccccccccEEccccccccccccHHHHHHHHEEEcccccEEcccccccEEEEEccccccccccccccHHHHHHHHHHccccEEEEEEccccccHHHHHHHcccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHccccEEEccccccHHcHHHHHHHHHHHHHHHHHHHHHccc

cEEEEEEEEccccHEHHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHcccEEEcccccccccccccccccEHHHHHHHHHHHHHHHccEEEEEcccccccccEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccEcccHHHHHHHHHHHHHHHHcccccHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccEEEccccHHHHHHHHHHHHcccccccEccccHHHHEEEEEccccccHHccHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHcccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccEEEccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccc

mfciaghvhfkqhkfELTKEQKSQLDRLvhlpiihtnkyectlppnhrfpmskfsktfNYLVRDKVIdkskqliepqQISESIAELVHTKEYVhkffngkttekeQKVTGFEwsaglasrvrtdpvpthVIAVYLpfflqrrpvFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMvgintqpvsgyQATLKEHLpgilaqfkpdlviydagvdphqhdelgklnltdhgecisssarisseagvdphqhdelgklnltdhgvkyilndrtdpvptHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVgintqpvsarsppervfqftgpicylqppqkELNKQILTLIkvpssmtvnsiepeclklvsisdttrdraqsphcrpgctsgmksSHRALIMEiglpcydgdgtafifdkdpavftfsmhcgrnypfrkqcsdldvaidvgtddagnrTVALTWVTFLSQRSEKMRNNGIFLFLLRlsdpeinrfsthhafpdhgagfcLMNDMALAARYLIRHGIVRKVLIVDLdvhqhtrsipvpsltvlsscvpglymrdYYVLDTAisagipvatvtgggycadIDQLAQRQTIIHRAATHVYKERGL

mfciaghvhfkqhkfeltKEQKSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFfngkttekeqkVTGFewsaglasrvrtdpvpTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPssmtvnsiepeCLKLVSISdttrdraqsphcrpgctsgmkSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVhqhtrsipvpsltvlssCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL

*FCIAGHVHFKQHKFELTKEQKSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT**************************GKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVS*****ERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSI*************************RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY*****

*FCIAGHVHF**********************IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG*

MFCIAGHVHFKQHKFELTKEQKSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSA***********QHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSIS**********************SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		620	2.2.26 [Sep-21-2011]
P28606		300	Uncharacterized protein S	yes	N/A	0.240	0.496	0.342	2e-18
Q8RX28		660	Histone deacetylase 5 OS=	yes	N/A	0.174	0.163	0.303	0.0003
Q8C2B3		938	Histone deacetylase 7 OS=	yes	N/A	0.072	0.047	0.488	0.0005
Q20296		955	Histone deacetylase 6 OS=	no	N/A	0.05	0.032	0.463	0.0007
P72702		304	Uncharacterized protein s	N/A	N/A	0.077	0.157	0.437	0.0009

>sp\|P28606\|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1628 PE=3 SV=2	Back alignment and function desciption

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 92/207 (44%), Gaps = 58/207 (28%)

Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
           I+ + L  + GDGTAFIF  DP VFTFSMHC  N+P +KQ SDLD+ +  G DD G    
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDG---- 207

Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
              ++  L+   E          LL    P++        F D G               
Sbjct: 208 ---YLQILAHHLED---------LLSQVKPDL-------VFYDAG--------------- 233

Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
                         +D H   R      L  L+    GLY R+  VL T ++AG PVA V
Sbjct: 234 --------------VDTHVGDR------LGKLAMTNTGLYRRERLVLSTCLAAGYPVACV 273

Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
            GGGY  +I  L  R +++HRAA  VY
Sbjct: 274 IGGGYAKNIHDLVYRHSLLHRAARDVY 300

Putative deacetylase.
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp\|Q8RX28\|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1	Back alignment and function description

>sp\|Q8C2B3\|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2	Back alignment and function description

>sp\|Q20296\|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2	Back alignment and function description

>sp\|P72702\|Y245_SYNY3 Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0245 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		620
410910398		333	PREDICTED: uncharacterized protein SYNPC	0.356	0.663	0.349	5e-33
432891572		341	PREDICTED: uncharacterized protein SYNPC	0.327	0.595	0.361	1e-31
99643283		322	class 4 HDAC protein [Platynereis dumeri	0.335	0.645	0.366	4e-31
348525428		345	PREDICTED: uncharacterized protein SYNPC	0.327	0.588	0.350	2e-29
405971212		361	hypothetical protein CGI_10022459 [Crass	0.337	0.578	0.368	2e-28
291233233		315	PREDICTED: predicted protein-like, parti	0.337	0.663	0.341	1e-25
443693723		308	hypothetical protein CAPTEDRAFT_228874 [	0.380	0.766	0.344	2e-23
390334589		344	PREDICTED: uncharacterized protein SYNPC	0.317	0.572	0.350	3e-23
326674312		283	PREDICTED: uncharacterized protein SYNPC	0.248	0.544	0.358	2e-22
428319276		305	Histone deacetylase [Oscillatoria nigro-	0.340	0.691	0.329	5e-22

>gi\|410910398\|ref\|XP_003968677.1\| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Takifugu rubripes]	Back alignment and taxonomy information

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 135/272 (49%), Gaps = 51/272 (18%)

Query: 11  KQHKFELTKEQKSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS 70
           KQHK       +S       LPIIH +KY C LP NHRFPM KF +  ++L +D+VI ++
Sbjct: 17  KQHKDAWEVRHES-----CGLPIIHHSKYVCDLPTNHRFPMGKFPRVLHFLFKDQVITEN 71

Query: 71  KQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV 130
            Q+  P+  S  +   VHT+EY++ F NG+  E+EQ+ TGF WS G+ +R R +   T +
Sbjct: 72  -QVWVPEIASSDLLSCVHTEEYLNNFMNGRINEQEQRRTGFPWSEGIVTRCRYETGGTLL 130

Query: 131 IAVYLPFFLQRR-------------PVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAA 177
            A      LQR              P F     +L DL   A Y++  L+R+ +  D+  
Sbjct: 131 AA---ELALQRGLACSTAGGTHHAFPGFGSGFCLLNDLAVAAKYVSASLKRKVLIVDLDV 187

Query: 178 VLADLIHFMVGINTQPVS-----------------------------GYQATLKEHLPGI 208
              D   F+     +  +                              Y +T+++HLP +
Sbjct: 188 HQGDGTAFIFKEEPRVFTFSVHCGKNFPLRKQQSDLDVSVDDGLEDKDYLSTVEDHLPWL 247

Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
           L  F+PDLV+YDAGVDPH+ DELGKL LTD G
Sbjct: 248 LDTFRPDLVLYDAGVDPHREDELGKLCLTDQG 279

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|432891572\|ref\|XP_004075590.1\| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Oryzias latipes]	Back alignment and taxonomy information

>gi\|99643283\|emb\|CAK22358.1\| class 4 HDAC protein [Platynereis dumerilii]	Back alignment and taxonomy information

>gi\|348525428\|ref\|XP_003450224.1\| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Oreochromis niloticus]	Back alignment and taxonomy information

>gi\|405971212\|gb\|EKC36062.1\| hypothetical protein CGI_10022459 [Crassostrea gigas]	Back alignment and taxonomy information

>gi\|291233233\|ref\|XP_002736558.1\| PREDICTED: predicted protein-like, partial [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|443693723\|gb\|ELT95017.1\| hypothetical protein CAPTEDRAFT_228874 [Capitella teleta]	Back alignment and taxonomy information

>gi\|390334589\|ref\|XP_001198918.2\| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Strongylocentrotus purpuratus]	Back alignment and taxonomy information

>gi\|326674312\|ref\|XP_001920667.3\| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Danio rerio]	Back alignment and taxonomy information

>gi\|428319276\|ref\|YP_007117158.1\| Histone deacetylase [Oscillatoria nigro-viridis PCC 7112] gi\|428242956\|gb\|AFZ08742.1\| Histone deacetylase [Oscillatoria nigro-viridis PCC 7112]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		620
UNIPROTKB\|Q48DS3		305	PSPPH_4352 "Histone deacetylas	0.143	0.291	0.355	6.5e-23
UNIPROTKB\|Q4K5L2		306	PFL_5403 "Histone deacetylase	0.143	0.290	0.322	6.8e-23
UNIPROTKB\|Q47YS1		300	CPS_3373 "Histone deacetylase	0.140	0.29	0.348	9.6e-09
TIGR_CMR\|CPS_3373		300	CPS_3373 "histone deacetylase	0.140	0.29	0.348	9.6e-09
UNIPROTKB\|Q8EFZ9		304	SO_1815 "Histone deacetylase s	0.382	0.779	0.241	7e-14
TIGR_CMR\|SO_1815		304	SO_1815 "histone deacetylase/A	0.382	0.779	0.241	7e-14
UNIPROTKB\|F1NYW6		357	HDAC11 "Uncharacterized protei	0.067	0.117	0.465	6e-08
UNIPROTKB\|Q96DB2		347	HDAC11 "Histone deacetylase 11	0.101	0.181	0.313	1e-07
UNIPROTKB\|Q9GKU5		347	HDAC11 "Histone deacetylase 11	0.101	0.181	0.313	1e-07
MGI\|MGI:2385252		347	Hdac11 "histone deacetylase 11	0.066	0.118	0.454	1.4e-07

UNIPROTKB\|Q48DS3 PSPPH_4352 "Histone deacetylase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]	Back alignment and assigned GO terms

 Score = 158 (60.7 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
 Identities = 32/90 (35%), Positives = 46/90 (51%)

Query:    31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
             LP+I+   Y    P +HRFPM KF    +YLV D  +    QL+ P+     I  L H  
Sbjct:     3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLV-DSGLTSDVQLMRPELCPADILALAHDP 61

Query:    91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
              Y+ ++ NG  + ++Q+  G  WS  LA R
Sbjct:    62 SYISRYLNGDLSREDQRRLGLPWSEALARR 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|Q4K5L2 PFL_5403 "Histone deacetylase family protein" [Pseudomonas protegens Pf-5 (taxid:220664)]	Back alignment and assigned GO terms

UNIPROTKB\|Q47YS1 CPS_3373 "Histone deacetylase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_3373 CPS_3373 "histone deacetylase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8EFZ9 SO_1815 "Histone deacetylase superfamily protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1815 SO_1815 "histone deacetylase/AcuC/AphA family protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYW6 HDAC11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96DB2 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9GKU5 HDAC11 "Histone deacetylase 11" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

MGI\|MGI:2385252 Hdac11 "histone deacetylase 11" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.98	LOW CONFIDENCE prediction!
3rd Layer	3.5.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		620
cd09993		275	cd09993, HDAC_classIV, Histone deacetylase class I	4e-28
cd09993		275	cd09993, HDAC_classIV, Histone deacetylase class I	4e-18
pfam00850		300	pfam00850, Hist_deacetyl, Histone deacetylase doma	2e-16
cd09993		275	cd09993, HDAC_classIV, Histone deacetylase class I	2e-15
cd09993		275	cd09993, HDAC_classIV, Histone deacetylase class I	5e-15
COG0123		340	COG0123, AcuC, Deacetylases, including yeast histo	5e-13
cd09992		291	cd09992, HDAC_classII, Histone deacetylases and hi	1e-12
cd09996		359	cd09996, HDAC_classII_1, Histone deacetylases and	2e-11
cd09994		313	cd09994, HDAC_AcuC_like, Class I histone deacetyla	6e-11
pfam00850		300	pfam00850, Hist_deacetyl, Histone deacetylase doma	2e-10
cd11599		288	cd11599, HDAC_classII_2, Histone deacetylases and	5e-09
COG0123		340	COG0123, AcuC, Deacetylases, including yeast histo	1e-08
cd11600		313	cd11600, HDAC_Clr3, Class II Histone deacetylase C	1e-08
cd09301		279	cd09301, HDAC, Histone deacetylase (HDAC) classes	1e-08
cd11681		377	cd11681, HDAC_classIIa, Histone deacetylases, clas	2e-08
cd10002		336	cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6,	3e-08
cd10003		350	cd10003, HDAC6-dom2, Histone deacetylase 6, domain	3e-08
pfam00850		300	pfam00850, Hist_deacetyl, Histone deacetylase doma	9e-08
cd10001		298	cd10001, HDAC_classII_APAH, Histone deacetylase cl	1e-07
cd11682		337	cd11682, HDAC6-dom1, Histone deacetylase 6, domain	3e-07
cd10008		378	cd10008, HDAC7, Histone deacetylase 7	1e-06
cd09992		291	cd09992, HDAC_classII, Histone deacetylases and hi	2e-06
COG0123		340	COG0123, AcuC, Deacetylases, including yeast histo	1e-05
cd09991		306	cd09991, HDAC_classI, Class I histone deacetylases	1e-05
pfam00850		300	pfam00850, Hist_deacetyl, Histone deacetylase doma	2e-05
cd10000		364	cd10000, HDAC8, Histone deacetylase 8 (HDAC8)	3e-05
cd10009		379	cd10009, HDAC9, Histone deacetylase 9	7e-05
cd09301		279	cd09301, HDAC, Histone deacetylase (HDAC) classes	1e-04
cd10001		298	cd10001, HDAC_classII_APAH, Histone deacetylase cl	2e-04
cd11683		337	cd11683, HDAC10, Histone deacetylase 10	6e-04
cd10006		409	cd10006, HDAC4, Histone deacetylase 4	7e-04
cd10004		375	cd10004, RPD3-like, reduced potassium dependency-3	8e-04
cd11680		294	cd11680, HDAC_Hos1, Class I histone deacetylases H	8e-04
cd10007		420	cd10007, HDAC5, Histone deacetylase 5	0.001
COG0123		340	COG0123, AcuC, Deacetylases, including yeast histo	0.002
cd09994		313	cd09994, HDAC_AcuC_like, Class I histone deacetyla	0.002
cd11599		288	cd11599, HDAC_classII_2, Histone deacetylases and	0.002

>gnl\|CDD\|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	Back alignment and domain information

 Score =  113 bits (286), Expect = 4e-28
 Identities = 57/175 (32%), Positives = 68/175 (38%), Gaps = 71/175 (40%)

Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ----------------- 547
           THHAFPD G GFC+ ND+A+AAR L+  G+VR+VLIVDLDVHQ                 
Sbjct: 101 THHAFPDRGEGFCVFNDIAIAARVLLAEGLVRRVLIVDLDVHQGNGTAAIFADDPSVFTF 160

Query: 548 --H------------TRSIPVPS-------LTVLSSCVPGL------------------- 567
             H               +P+P        L  L   +P L                   
Sbjct: 161 SMHGEKNYPFRKEPSDLDVPLPDGTGDDEYLAALEEALPRLLAEFRPDLVFYNAGVDVLA 220

Query: 568 --------------YMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIH 608
                           RD  VL  A + GIPVA V GGGY  DI +L  R     
Sbjct: 221 GDRLGRLSLSLEGLRERDRLVLRFARARGIPVAMVLGGGYSRDIARLVARHAQTL 275

Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients. Length = 275

>gnl\|CDD\|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	Back alignment and domain information

>gnl\|CDD\|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain	Back alignment and domain information

>gnl\|CDD\|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	Back alignment and domain information

>gnl\|CDD\|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	Back alignment and domain information

>gnl\|CDD\|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII	Back alignment and domain information

>gnl\|CDD\|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	Back alignment and domain information

>gnl\|CDD\|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes	Back alignment and domain information

>gnl\|CDD\|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain	Back alignment and domain information

>gnl\|CDD\|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	Back alignment and domain information

>gnl\|CDD\|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins	Back alignment and domain information

>gnl\|CDD\|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins	Back alignment and domain information

>gnl\|CDD\|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa	Back alignment and domain information

>gnl\|CDD\|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10	Back alignment and domain information

>gnl\|CDD\|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2	Back alignment and domain information

>gnl\|CDD\|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain	Back alignment and domain information

>gnl\|CDD\|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa	Back alignment and domain information

>gnl\|CDD\|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1	Back alignment and domain information

>gnl\|CDD\|212532 cd10008, HDAC7, Histone deacetylase 7	Back alignment and domain information

>gnl\|CDD\|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII	Back alignment and domain information

>gnl\|CDD\|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|212517 cd09991, HDAC_classI, Class I histone deacetylases	Back alignment and domain information

>gnl\|CDD\|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain	Back alignment and domain information

>gnl\|CDD\|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8)	Back alignment and domain information

>gnl\|CDD\|212533 cd10009, HDAC9, Histone deacetylase 9	Back alignment and domain information

>gnl\|CDD\|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins	Back alignment and domain information

>gnl\|CDD\|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa	Back alignment and domain information

>gnl\|CDD\|212546 cd11683, HDAC10, Histone deacetylase 10	Back alignment and domain information

>gnl\|CDD\|212530 cd10006, HDAC4, Histone deacetylase 4	Back alignment and domain information

>gnl\|CDD\|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like	Back alignment and domain information

>gnl\|CDD\|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins	Back alignment and domain information

>gnl\|CDD\|212531 cd10007, HDAC5, Histone deacetylase 5	Back alignment and domain information

>gnl\|CDD\|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes	Back alignment and domain information

>gnl\|CDD\|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		620
COG0123		340	AcuC Deacetylases, including yeast histone deacety	100.0
PTZ00063		436	histone deacetylase; Provisional	100.0
PTZ00346		429	histone deacetylase; Provisional	100.0
PF00850		311	Hist_deacetyl: Histone deacetylase domain; InterPr	100.0
KOG1343\|consensus		797		100.0
KOG1342\|consensus		425		100.0
KOG1344\|consensus		324		99.96
PF00850		311	Hist_deacetyl: Histone deacetylase domain; InterPr	99.95
KOG1343\|consensus		797		99.95
COG0123		340	AcuC Deacetylases, including yeast histone deacety	99.95
PTZ00346		429	histone deacetylase; Provisional	99.95
PTZ00063		436	histone deacetylase; Provisional	99.94
KOG1342\|consensus		425		99.86
KOG1344\|consensus		324		99.6

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Probab=100.00  E-value=1.8e-45  Score=389.70  Aligned_cols=281  Identities=22%  Similarity=0.251  Sum_probs=244.4

Q ss_pred             ccccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCChh-hh
Q psy16742         29 VHLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEK-EQ  106 (620)
Q Consensus        29 m~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~~-~~  106 (620)
                      |++.++||+.|.. .++++|||+|.|++++.++|++.++.. .+.+++|++++.++|++||+++||+.+.+...... ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~-~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~~~~   80 (340)
T COG0123           2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPD-SLELVEPRPATLEELLLVHSPDYVEFLESLSEEEGYGN   80 (340)
T ss_pred             CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccc-cccccCCCcCCHHHHHhhCCHHHHHHHHHhcccccccc
Confidence            5678999998887 899999999999999999999999776 78899999999999999999999999988654421 24


Q ss_pred             hhcCcccCHHhHHHHHhccCchhHHHhh-cCCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCCcce
Q psy16742        107 KVTGFEWSAGLASRVRTDPVPTHVIAVY-LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHF  185 (620)
Q Consensus       107 ~~~g~~~s~~s~e~A~lAaGgti~Aa~~-~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGngih~  185 (620)
                      .+.+++++++++++|++++||+++|++. ++|.                                               
T Consensus        81 ~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~-----------------------------------------------  113 (340)
T COG0123          81 LDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE-----------------------------------------------  113 (340)
T ss_pred             ccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-----------------------------------------------
Confidence            5567899999999999999999988531 1111                                               


Q ss_pred             ecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcccccccccc
Q psy16742        186 MVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGK  265 (620)
Q Consensus       186 ~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~  265 (620)
                                                                                            .         
T Consensus       114 ----------------------------------------------------------------------~---------  114 (340)
T COG0123         114 ----------------------------------------------------------------------D---------  114 (340)
T ss_pred             ----------------------------------------------------------------------c---------
Confidence                                                                                  0         


Q ss_pred             cccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccccCCCeEeec
Q psy16742        266 LNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQ  345 (620)
Q Consensus       266 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~C~~~  345 (620)
                                           .++                              |+++||+|||.+    +.++|||+| 
T Consensus       115 ---------------------~~~------------------------------~~~rppgHHA~~----~~a~GFC~f-  138 (340)
T COG0123         115 ---------------------NAF------------------------------ALVRPPGHHAGR----DRASGFCLF-  138 (340)
T ss_pred             ---------------------ceE------------------------------EECCCCcccccC----CCCceeeee-
Confidence                                 122                              889999999998    999999999 


Q ss_pred             CCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccChhHHHHH
Q psy16742        346 PPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFI  425 (620)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng~~~i  425 (620)
                                            ||+|      |||+.++               +. +..||+|||  +|+|||||||+|
T Consensus       139 ----------------------Nn~A------iaa~~l~---------------~~-~~~RVaIiD--~DvHHGnGTqei  172 (340)
T COG0123         139 ----------------------NNVA------IAAKYLL---------------KK-GVKRVAIID--FDVHHGNGTQEI  172 (340)
T ss_pred             ----------------------cHHH------HHHHHHH---------------Hc-CCCcEEEEE--ecCCCChhhHHH
Confidence                                  9999      9999994               23 689999999  999999999999


Q ss_pred             HhhCCCceeeccccC--CCCCCccc---------cCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhc
Q psy16742        426 FDKDPAVFTFSMHCG--RNYPFRKQ---------CSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLR  494 (620)
Q Consensus       426 f~~~p~v~t~S~H~~--~~yP~~~~---------~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~  494 (620)
                      |+++|+|+++|+|+.  .+||+++.         ..+.|+||++|+.++.|+.+ +....  ..+.+.|+          
T Consensus       173 fy~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a-~~~~v--~~~~~~f~----------  239 (340)
T COG0123         173 FYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEA-LEEIV--LPLLEEFK----------  239 (340)
T ss_pred             HccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHHHHHH-HHHHH--HHHHHhcC----------
Confidence            999999999999995  78999876         57799999999999999999 55433  44556666          


Q ss_pred             cCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCccccchhH
Q psy16742        495 LSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYV  574 (620)
Q Consensus       495 ~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v  574 (620)
                                     ||                          ++||++++|...+    |+++.|++|.++|..++..+
T Consensus       240 ---------------Pd--------------------------lvivsaG~D~h~~----Dpl~~~~Lt~~~~~~~~~~v  274 (340)
T COG0123         240 ---------------PD--------------------------LVIVSAGFDAHRG----DPLGRLNLTEEGYAKIGRAV  274 (340)
T ss_pred             ---------------CC--------------------------EEEEecCcccCCC----CccceeecCHHHHHHHHHHH
Confidence                           89                          9999988888888    99999999999999999999


Q ss_pred             HHHHHhcCCCeeecCCCCChhh
Q psy16742        575 LDTAISAGIPVATVTGGGYCAD  596 (620)
Q Consensus       575 ~~~~~~~niPl~~~~gGGY~~~  596 (620)
                      .+.+...++|++.++||||+.+
T Consensus       275 ~~~a~~~~~~~~~vleGGY~~~  296 (340)
T COG0123         275 RKLAEGYGGPVVAVLEGGYNLD  296 (340)
T ss_pred             HHHHHhcCCCeEEEecCCCChH
Confidence            9999988999999999999885

>PTZ00063 histone deacetylase; Provisional	Back alignment and domain information

>PTZ00346 histone deacetylase; Provisional	Back alignment and domain information

>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine	Back alignment and domain information

>KOG1343\|consensus	Back alignment and domain information

>KOG1342\|consensus	Back alignment and domain information

>KOG1344\|consensus	Back alignment and domain information

>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine	Back alignment and domain information

>KOG1343\|consensus	Back alignment and domain information

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PTZ00346 histone deacetylase; Provisional	Back alignment and domain information

>PTZ00063 histone deacetylase; Provisional	Back alignment and domain information

>KOG1342\|consensus	Back alignment and domain information

>KOG1344\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		620
1c3p_A		375	Protein (HDLP (histone deacetylase-like protein) )	5e-13
1c3p_A		375	Protein (HDLP (histone deacetylase-like protein) )	8e-06
3q9b_A		341	Acetylpolyamine amidohydrolase; HDAC, polyamines,	4e-12
3q9b_A		341	Acetylpolyamine amidohydrolase; HDAC, polyamines,	2e-05
1zz1_A		369	Histone deacetylase-like amidohydrolase; HET: SHH;	7e-12
1zz1_A		369	Histone deacetylase-like amidohydrolase; HET: SHH;	2e-05
2pqp_A		421	HD7A, histone deacetylase 7A; HDAC, structural gen	1e-11
3max_A		367	HD2, histone deacetylase 2; class 2, HDAC, foot po	2e-11
3max_A		367	HD2, histone deacetylase 2; class 2, HDAC, foot po	3e-05
3ew8_A		388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	6e-11
3ew8_A		388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	6e-05
3men_A		362	Acetylpolyamine aminohydrolase; histone deacetylas	8e-11
3men_A		362	Acetylpolyamine aminohydrolase; histone deacetylas	2e-05
4a69_A		376	Histone deacetylase 3,; transcription, hydrolase;	3e-10
4a69_A		376	Histone deacetylase 3,; transcription, hydrolase;	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375	Back alignment and structure

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
            HHAF     GFC +N+ A+   YL + G  +++L +DLD H
Sbjct: 130 MHHAFKSRANGFCYINNPAVGIEYLRKKG-FKRILYIDLDAH 170

PyMOL of 1c3p

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375	Back alignment and structure

>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341	Back alignment and structure

>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341	Back alignment and structure

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369	Back alignment and structure

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369	Back alignment and structure

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367	Back alignment and structure

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367	Back alignment and structure

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388	Back alignment and structure

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388	Back alignment and structure

>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362	Back alignment and structure

>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362	Back alignment and structure

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376	Back alignment and structure

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		620
2pqp_A		421	HD7A, histone deacetylase 7A; HDAC, structural gen	100.0
2vqm_A		413	HD4, histone deacetylase 4; inhibitor, repressor,	100.0
1c3p_A		375	Protein (HDLP (histone deacetylase-like protein) )	100.0
1zz1_A		369	Histone deacetylase-like amidohydrolase; HET: SHH;	100.0
3ew8_A		388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	100.0
4a69_A		376	Histone deacetylase 3,; transcription, hydrolase;	100.0
3max_A		367	HD2, histone deacetylase 2; class 2, HDAC, foot po	100.0
3q9b_A		341	Acetylpolyamine amidohydrolase; HDAC, polyamines,	100.0
3men_A		362	Acetylpolyamine aminohydrolase; histone deacetylas	100.0
1zz1_A		369	Histone deacetylase-like amidohydrolase; HET: SHH;	99.96
4a69_A		376	Histone deacetylase 3,; transcription, hydrolase;	99.95
1c3p_A		375	Protein (HDLP (histone deacetylase-like protein) )	99.95
3men_A		362	Acetylpolyamine aminohydrolase; histone deacetylas	99.95
3q9b_A		341	Acetylpolyamine amidohydrolase; HDAC, polyamines,	99.94
3ew8_A		388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	99.94
3max_A		367	HD2, histone deacetylase 2; class 2, HDAC, foot po	99.94
2pqp_A		421	HD7A, histone deacetylase 7A; HDAC, structural gen	99.93
2vqm_A		413	HD4, histone deacetylase 4; inhibitor, repressor,	99.93

>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*	Back alignment and structure

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*	Back alignment and structure

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*	Back alignment and structure

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*	Back alignment and structure

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}	Back alignment and structure

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}	Back alignment and structure

>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*	Back alignment and structure

>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}	Back alignment and structure

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*	Back alignment and structure

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}	Back alignment and structure

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*	Back alignment and structure

>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}	Back alignment and structure

>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*	Back alignment and structure

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*	Back alignment and structure

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}	Back alignment and structure

>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		620
d1c3pa_		372	c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta	4e-08
d1t64a_		364	c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human	5e-08
d3c10a1		386	c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7	5e-04

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 36/264 (13%), Positives = 79/264 (29%), Gaps = 30/264 (11%)

Query: 44  PPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTE 103
           P NH   + + S    +     +ID+ K+LI+ +  ++    L HT++Y++     +  +
Sbjct: 17  PKNHPLKIPRVSLLLRFKDAMNLIDE-KELIKSRPATKEELLLFHTEDYINTLMEAERCQ 75

Query: 104 KEQKVTGFE---------WSAGLASRVRT----------DPVPTHVIAVYLPFFLQRRPV 144
              K    +          S  + +              + +  +V              
Sbjct: 76  CVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKS 135

Query: 145 FFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMV-------GINTQPVSGY 197
             +    + +      YL     +R ++ D+ A   D +            ++      Y
Sbjct: 136 RANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 195

Query: 198 QATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---ISSEAG 254
               ++     + + K      +  +    +D      L    E +           + G
Sbjct: 196 AFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLG 255

Query: 255 VDPHQHDELGKLNLTDHGVKYILN 278
            DP   D L K NL++       N
Sbjct: 256 TDPLLEDYLSKFNLSNVAFLKAFN 279

PyMOL of d1c3pa_

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364	Back information, alignment and structure

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		620
d1c3pa_		372	HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	100.0
d3c10a1		386	Histone deacetylase 7, HDAC7 {Human (Homo sapiens)	100.0
d1t64a_		364	Histone deacetylase 8, HDAC8 {Human (Homo sapiens)	100.0
d1t64a_		364	Histone deacetylase 8, HDAC8 {Human (Homo sapiens)	99.94
d1c3pa_		372	HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	99.94
d3c10a1		386	Histone deacetylase 7, HDAC7 {Human (Homo sapiens)	99.93

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=4.1e-47  Score=404.04  Aligned_cols=227  Identities=19%  Similarity=0.217  Sum_probs=192.4

Q ss_pred             cccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCC----CChh
Q psy16742         30 HLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGK----TTEK  104 (620)
Q Consensus        30 ~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~----~~~~  104 (620)
                      ++.+|||++|.. .+|++|||+|+|++.+++.|+++|+++ ++++++|++||.|+|++|||++||+.|++..    .+..
T Consensus         2 k~~li~~~d~~~~~~g~~HPe~p~Rl~~i~~~L~~~gl~~-~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~   80 (372)
T d1c3pa_           2 KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLID-EKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG   80 (372)
T ss_dssp             CEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCC-GGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred             eEEEEeChhhcCCCCCCccCcCHHHHHHHHHHHHHcCCCC-CCcEEcCCCCCHHHHHHhCCHHHHHHHHHhcccccCccc
Confidence            478999999987 899999999999999999999999998 8999999999999999999999999997531    1111


Q ss_pred             h--hhhc---CcccCHHhHHHHHhccCchhHHHh-hcCCCc----CC--CCccccchh---hhhHHHHHHHHHHHhCCCC
Q psy16742        105 E--QKVT---GFEWSAGLASRVRTDPVPTHVIAV-YLPFFL----QR--RPVFFDIAA---VLADLICIAVYLTFFLQRR  169 (620)
Q Consensus       105 ~--~~~~---g~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg~----~G--HHA~~d~a~---ifNnvAiAa~~l~~~~~~R  169 (620)
                      .  ....   ..|+++++++++++++|+++.|+. +.+|..    +|  |||.+++++   +|||+||||+++++.+.+|
T Consensus        81 ~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~~~~R  160 (372)
T d1c3pa_          81 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR  160 (372)
T ss_dssp             HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred             ccccccCCCcCCCCCHHHHHHHHHhhhhHHHHhhhhccccceeeccccccccccccceeeeecchHHHHHHHHHHhccCc
Confidence            1  1112   347899999999999999999986 444443    34  999999987   9999999999999989999


Q ss_pred             eEEEEeeeeeCCC---------------cceec--------------------CC--cc-----CChHHHHHHHHHHHHh
Q psy16742        170 PVFFDIAAVLADL---------------IHFMV--------------------GI--NT-----QPVSGYQATLKEHLPG  207 (620)
Q Consensus       170 VlIVD~D~HhGng---------------ih~~~--------------------G~--n~-----~gD~~Yl~a~~~vl~p  207 (620)
                      |+|||||+|||||               +|+..                    |+  |+     ++|++|+.+|+++|.|
T Consensus       161 V~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~l~p  240 (372)
T d1c3pa_         161 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI  240 (372)
T ss_dssp             EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEeccccCCCceeEEEeecCCccccccccCCCCCCCCCCCCccccCCCccccceecccCCcccccHHHHHHHHHhHHH
Confidence            9999999999998               55431                    12  23     5899999999999999


Q ss_pred             HHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhcc-------ccccccCCCcc
Q psy16742        208 ILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSS-------ARISSEAGVDP  257 (620)
Q Consensus       208 il~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~-------~~~~~~agg~~  257 (620)
                      ++++|+||+||||||||+|++||||+|+||++||.+++.       ..+++++||++
T Consensus       241 ~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~~~~~~vleGGY~  297 (372)
T d1c3pa_         241 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYH  297 (372)
T ss_dssp             HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCC
T ss_pred             HHHhcCCcEEEEECCcccCCcCcccCCcCCHHHHHHHHHHHHHhCCCeEEEEcCCCc
Confidence            999999999999999999999999999999999998833       34445555554

PyMOL of d1c3pa_

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure