Psyllid ID: psy16748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MNSDCTSCGKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGEEGGGWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHVQMTK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHcccccccHHHHHHcccccccccccccccccEEEEcccccccccccccEEEEEEEEEEEEEcEEEEEEEEcc
ccccccccccEEEEEcccccccccccccccccccccHHHcccHHHccccHHHHHHHHHHHHHHHHHHccccEEEEccEEEEccccccccHHHHHHHHHccccccccEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHcccEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
mnsdctscgkkieisnfpptlhahegclklphhfphaqrqerprmaylspvhkhTLKTLKILVRMASsgyrieadtfgelqvpndkyygaqtvrstinfpiggetermplpviTAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVIsgklyaehfplviwqtgsgtqtnmntneVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNpyldrrnkknvdenvlnlssagssdseegeegggwdfvqggqdartLATHTSHTVTVSAKLKIFDTHFTFHVQMTK
MNSDCTSCGKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRStinfpiggeteRMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLssagssdseegEEGGGWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHVQMTK
MNSDCTSCGKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLssagssdseegeegggWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHVQMTK
***********IEISNFPPTLHAHEGCLKLPHHF**********MAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDR*****************************WDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHV****
********GKKIEISNFPPTLHAHEGC*******************************************RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLG*****GERLLFLPIADFWQLLN**********************************WDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHVQMT*
********GKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSS************GGWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHVQMTK
****CTSCGKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGW**QNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGEEGGGWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHF********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSDCTSCGKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGEEGGGWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFTFHVQMTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
Q7SX99 509 Fumarate hydratase, mitoc yes N/A 0.494 0.282 0.690 7e-51
P14408 507 Fumarate hydratase, mitoc yes N/A 0.429 0.246 0.755 9e-50
P97807 507 Fumarate hydratase, mitoc yes N/A 0.429 0.246 0.740 6e-49
Q60HF9 510 Fumarate hydratase, mitoc N/A N/A 0.422 0.241 0.76 7e-49
P07954 510 Fumarate hydratase, mitoc yes N/A 0.422 0.241 0.76 8e-49
P10173 466 Fumarate hydratase, mitoc yes N/A 0.402 0.251 0.762 4e-48
O17214 501 Probable fumarate hydrata yes N/A 0.398 0.231 0.777 6e-46
P55250 494 Fumarate hydratase, mitoc N/A N/A 0.402 0.236 0.711 4e-42
O94552 520 Fumarate hydratase, mitoc yes N/A 0.402 0.225 0.677 6e-41
P08417 488 Fumarate hydratase, mitoc yes N/A 0.443 0.264 0.633 4e-40
>sp|Q7SX99|FUMH_DANRE Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1 Back     alignment and function desciption
 Score =  201 bits (510), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 120/152 (78%), Gaps = 8/152 (5%)

Query: 37  AQRQERPRMAYLSPVHKHTLKTLKILVRMASS-GYRIEADTFGELQVPNDKYYGAQTVRS 95
           AQR  + R    +P  +H        VRMASS  +RIE DTFGEL+VP+DKYYGAQTVRS
Sbjct: 21  AQRSIKARNVCPAPGLRHQT------VRMASSEAFRIERDTFGELKVPSDKYYGAQTVRS 74

Query: 96  TINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAE 155
           T+NF IGG TERMP+ VI A G LKKAAA+VNK++GLD K+ADAI KAADEV SGKL  +
Sbjct: 75  TMNFRIGGVTERMPIQVIRAFGILKKAAAEVNKDYGLDPKIADAIMKAADEVESGKL-DD 133

Query: 156 HFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
           HFPLV+WQTGSGTQTNMN NEVISNRAIE+LG
Sbjct: 134 HFPLVVWQTGSGTQTNMNVNEVISNRAIEMLG 165

Danio rerio (taxid: 7955)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1 Back     alignment and function description
>sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=3 Back     alignment and function description
>sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1 Back     alignment and function description
>sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3 Back     alignment and function description
>sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1 Back     alignment and function description
>sp|O17214|FUMH_CAEEL Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1 Back     alignment and function description
>sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1 Back     alignment and function description
>sp|O94552|FUMH_SCHPO Fumarate hydratase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fum1 PE=3 SV=3 Back     alignment and function description
>sp|P08417|FUMH_YEAST Fumarate hydratase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUM1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
242010453 506 fumarate hydratase, putative [Pediculus 0.529 0.304 0.680 2e-55
195047613 496 GH24716 [Drosophila grimshawi] gi|193893 0.429 0.252 0.808 4e-54
157118058 503 aspartate ammonia lyase [Aedes aegypti] 0.494 0.286 0.692 6e-54
198470180 496 GA22866 [Drosophila pseudoobscura pseudo 0.429 0.252 0.8 1e-53
332374940 496 unknown [Dendroctonus ponderosae] 0.436 0.256 0.779 2e-53
24640177 495 lethal (1) G0255, isoform A [Drosophila 0.429 0.252 0.792 2e-53
19528365 495 LD46083p [Drosophila melanogaster] 0.429 0.252 0.792 2e-53
195397269 496 GJ16987 [Drosophila virilis] gi|19414701 0.429 0.252 0.792 2e-53
195133009 496 GI21814 [Drosophila mojavensis] gi|19390 0.429 0.252 0.792 2e-53
91084043 497 PREDICTED: similar to AGAP001884-PA [Tri 0.412 0.241 0.825 3e-53
>gi|242010453|ref|XP_002425982.1| fumarate hydratase, putative [Pediculus humanus corporis] gi|212509973|gb|EEB13244.1| fumarate hydratase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 127/166 (76%), Gaps = 12/166 (7%)

Query: 30  LPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRM--------ASSGYRIEADTFGELQ 81
           +P   P +Q+  R    Y   V K  +  L     M         S+ YRIEADTFGEL+
Sbjct: 1   MPFLIPFSQQSRR----YAIDVLKKNIPQLSFNGSMNFSSSTVNMSNDYRIEADTFGELK 56

Query: 82  VPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAIS 141
           VP DKYYGAQTVRSTINFPIGGETERMP P+ITAMG LKKAAA VNK++GLD K++DAIS
Sbjct: 57  VPKDKYYGAQTVRSTINFPIGGETERMPYPLITAMGILKKAAAIVNKDYGLDPKISDAIS 116

Query: 142 KAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
           KAAD+VISGKLY +HFPLVIWQTGSGTQTNMNTNEVISNRAIE+LG
Sbjct: 117 KAADDVISGKLYHDHFPLVIWQTGSGTQTNMNTNEVISNRAIELLG 162

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195047613|ref|XP_001992377.1| GH24716 [Drosophila grimshawi] gi|193893218|gb|EDV92084.1| GH24716 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|157118058|ref|XP_001658987.1| aspartate ammonia lyase [Aedes aegypti] gi|108875839|gb|EAT40064.1| AAEL008167-PB [Aedes aegypti] Back     alignment and taxonomy information
>gi|198470180|ref|XP_002133384.1| GA22866 [Drosophila pseudoobscura pseudoobscura] gi|198145329|gb|EDY72012.1| GA22866 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|332374940|gb|AEE62611.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|24640177|ref|NP_572339.1| lethal (1) G0255, isoform A [Drosophila melanogaster] gi|195340303|ref|XP_002036753.1| GM12511 [Drosophila sechellia] gi|22831834|gb|AAF46186.3| lethal (1) G0255, isoform A [Drosophila melanogaster] gi|194130869|gb|EDW52912.1| GM12511 [Drosophila sechellia] gi|329112611|gb|AEB72009.1| FI05334p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|19528365|gb|AAL90297.1| LD46083p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195397269|ref|XP_002057251.1| GJ16987 [Drosophila virilis] gi|194147018|gb|EDW62737.1| GJ16987 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195133009|ref|XP_002010932.1| GI21814 [Drosophila mojavensis] gi|193907720|gb|EDW06587.1| GI21814 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|91084043|ref|XP_967085.1| PREDICTED: similar to AGAP001884-PA [Tribolium castaneum] gi|270006696|gb|EFA03144.1| hypothetical protein TcasGA2_TC013056 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
FB|FBgn0028336 495 l(1)G0255 "lethal (1) G0255" [ 0.429 0.252 0.792 2.2e-50
ZFIN|ZDB-GENE-010724-6 509 fh "fumarate hydratase" [Danio 0.494 0.282 0.697 3.3e-47
UNIPROTKB|Q148D3 510 FH "Fumarate hydratase" [Bos t 0.422 0.241 0.768 1.8e-46
UNIPROTKB|E2RGR9 508 FH "Uncharacterized protein" [ 0.422 0.242 0.76 1.8e-46
RGD|2614 507 Fh "fumarate hydratase" [Rattu 0.429 0.246 0.755 2.3e-46
UNIPROTKB|Q5M964 507 Fh "Protein Fh1" [Rattus norve 0.429 0.246 0.755 2.3e-46
UNIPROTKB|P07954 510 FH "Fumarate hydratase, mitoch 0.422 0.241 0.76 7.9e-46
MGI|MGI:95530 507 Fh1 "fumarate hydratase 1" [Mu 0.429 0.246 0.740 7.9e-46
UNIPROTKB|I3LPP1 466 FH "Fumarate hydratase, mitoch 0.419 0.261 0.758 1.3e-45
UNIPROTKB|P10173 466 FH "Fumarate hydratase, mitoch 0.415 0.259 0.737 5.6e-45
FB|FBgn0028336 l(1)G0255 "lethal (1) G0255" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 99/125 (79%), Positives = 115/125 (92%)

Query:    63 VRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKA 122
             +R+AS  +R+E+DTFGEL+VP DKYYGAQT+RS INFPIGG TERMP PV+ AMG LKKA
Sbjct:    27 LRLASQEFRVESDTFGELKVPADKYYGAQTMRSQINFPIGGATERMPKPVVQAMGILKKA 86

Query:   123 AAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA 182
             AA+VNKEFGLD+KV++AISKAAD+VISGKLY +HFPLVIWQTGSGTQ+NMN NEVISNRA
Sbjct:    87 AAEVNKEFGLDSKVSEAISKAADDVISGKLYDDHFPLVIWQTGSGTQSNMNVNEVISNRA 146

Query:   183 IEILG 187
             IE+LG
Sbjct:   147 IELLG 151
GO:0005739 "mitochondrion" evidence=ISS;IDA
GO:0004333 "fumarate hydratase activity" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0045239 "tricarboxylic acid cycle enzyme complex" evidence=IEA
GO:0006106 "fumarate metabolic process" evidence=IEA
ZFIN|ZDB-GENE-010724-6 fh "fumarate hydratase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q148D3 FH "Fumarate hydratase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGR9 FH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2614 Fh "fumarate hydratase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M964 Fh "Protein Fh1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P07954 FH "Fumarate hydratase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:95530 Fh1 "fumarate hydratase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPP1 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P10173 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P28894FUMC1_BRAJA4, ., 2, ., 1, ., 20.5840.41580.2558yesN/A
O66271FUMC_THET24, ., 2, ., 1, ., 20.64160.40540.2532yesN/A
Q9FI53FUM2_ARATH4, ., 2, ., 1, ., 20.62900.42260.2464yesN/A
P08417FUMH_YEAST4, ., 2, ., 1, ., 20.63350.44320.2643yesN/A
Q983U5FUMC_RHILO4, ., 2, ., 1, ., 20.57250.41230.2580yesN/A
P93033FUM1_ARATH4, ., 2, ., 1, ., 20.62690.42950.2540yesN/A
P97807FUMH_MOUSE4, ., 2, ., 1, ., 20.74010.42950.2465yesN/A
P95331FUMC_MYXXD4, ., 2, ., 1, ., 20.58870.41230.2575yesN/A
P07954FUMH_HUMAN4, ., 2, ., 1, ., 20.760.42260.2411yesN/A
P10173FUMH_PIG4, ., 2, ., 1, ., 20.76270.40200.2510yesN/A
Q7SX99FUMH_DANRE4, ., 2, ., 1, ., 20.69070.49480.2829yesN/A
O94552FUMH_SCHPO4, ., 2, ., 1, ., 20.67790.40200.225yesN/A
Q54VA2FUMH_DICDI4, ., 2, ., 1, ., 20.60150.42950.2577yesN/A
P14408FUMH_RAT4, ., 2, ., 1, ., 20.75590.42950.2465yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
PRK00485 464 PRK00485, fumC, fumarate hydratase; Reviewed 5e-69
cd01362 455 cd01362, Fumarase_classII, Class II fumarases 2e-68
cd01596 450 cd01596, Aspartase_like, aspartase (L-aspartate am 8e-67
COG0114 462 COG0114, FumC, Fumarase [Energy production and con 4e-63
PLN00134 458 PLN00134, PLN00134, fumarate hydratase; Provisiona 6e-56
TIGR00979 458 TIGR00979, fumC_II, fumarate hydratase, class II 3e-55
PRK12273 472 PRK12273, aspA, aspartate ammonia-lyase; Provision 1e-47
cd01357 450 cd01357, Aspartase, Aspartase 1e-44
COG1027 471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 2e-41
PRK12425 464 PRK12425, PRK12425, fumarate hydratase; Provisiona 8e-41
PRK13353 473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 2e-40
TIGR00839 468 TIGR00839, aspA, aspartate ammonia-lyase 1e-29
PRK14515 479 PRK14515, PRK14515, aspartate ammonia-lyase; Provi 3e-28
pfam00206 312 pfam00206, Lyase_1, Lyase 9e-24
cd01334 325 cd01334, Lyase_I, Lyase class I family; a group of 2e-15
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information 
 Score =  220 bits (564), Expect = 5e-69
 Identities = 77/124 (62%), Positives = 91/124 (73%), Gaps = 4/124 (3%)

Query: 67  SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQV 126
               RIE D+ GE++VP D  +GAQT RS  NFPIGGE  RMP  +I A+  LKKAAA+V
Sbjct: 1   MMETRIEKDSMGEVEVPADALWGAQTQRSLENFPIGGE--RMPRELIRALALLKKAAARV 58

Query: 127 NKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
           N E G LDA+ ADAI  AADEVI+GK   +HFPL +WQTGSGTQ+NMN NEVI+NRA E+
Sbjct: 59  NAELGLLDAEKADAIVAAADEVIAGKH-DDHFPLDVWQTGSGTQSNMNVNEVIANRASEL 117

Query: 186 LGKN 189
           LG  
Sbjct: 118 LGGE 121

Length = 464
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
COG0114 462 FumC Fumarase [Energy production and conversion] 100.0
KOG1317|consensus 487 100.0
COG1027 471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
PRK12425 464 fumarate hydratase; Provisional 100.0
PRK14515 479 aspartate ammonia-lyase; Provisional 100.0
PLN00134 458 fumarate hydratase; Provisional 100.0
PRK13353 473 aspartate ammonia-lyase; Provisional 100.0
TIGR00979 458 fumC_II fumarate hydratase, class II. Putative fum 100.0
PRK12273 472 aspA aspartate ammonia-lyase; Provisional 99.97
TIGR00839 468 aspA aspartate ammonia-lyase. Fumarate hydratase s 99.97
cd01357 450 Aspartase Aspartase. This subgroup contains Escher 99.96
PRK00485 464 fumC fumarate hydratase; Reviewed 99.96
cd01362 455 Fumarase_classII Class II fumarases. This subgroup 99.94
cd01596 450 Aspartase_like aspartase (L-aspartate ammonia-lyas 99.86
PRK00855 459 argininosuccinate lyase; Provisional 99.7
PF00206 312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 99.46
PRK09053 452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 99.4
TIGR02426 338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 99.27
TIGR00838 455 argH argininosuccinate lyase. This model describes 99.01
PLN02646 474 argininosuccinate lyase 98.99
cd01359 435 Argininosuccinate_lyase Argininosuccinate lyase (a 98.97
PRK05975 351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 98.96
cd01597 437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 98.78
cd01334 325 Lyase_I Lyase class I family; a group of proteins 98.59
PRK04833 455 argininosuccinate lyase; Provisional 98.25
PRK08540 449 adenylosuccinate lyase; Reviewed 97.62
PRK08470 442 adenylosuccinate lyase; Provisional 96.7
cd01360 387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 95.92
PRK06390 451 adenylosuccinate lyase; Provisional 95.26
cd01595 381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 95.09
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 95.09
TIGR00928 435 purB adenylosuccinate lyase. This family consists 95.05
PRK02186 887 argininosuccinate lyase; Provisional 92.07
PRK06705 502 argininosuccinate lyase; Provisional 91.18
PRK07492 435 adenylosuccinate lyase; Provisional 86.49
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2e-65  Score=492.88  Aligned_cols=166  Identities=51%  Similarity=0.702  Sum_probs=161.1

Q ss_pred             CcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHH
Q psy16748         69 GYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEV  147 (291)
Q Consensus        69 ~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEI  147 (291)
                      ++|+|+|+||+++||+|+|||+|||||++||+|||  ++||.++|+||+++|||||+||.++| ||++++++|++|||||
T Consensus         2 ~~R~E~Dt~G~i~Vpad~~wgAQTqRs~~nF~ig~--~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev   79 (462)
T COG0114           2 TYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGG--EKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEV   79 (462)
T ss_pred             CcccccccCccccccHHHHHHHHHHHHHhcCCccc--ccCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999997  78999999999999999999999999 9999999999999999


Q ss_pred             HcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhch
Q psy16748        148 ISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNP  216 (291)
Q Consensus       148 i~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~  216 (291)
                      ++|+| +|+|||+|||||||||+|||+||||||||+|++|++.|           |++|||||+|||+||||++.++.++
T Consensus        80 ~~Gk~-d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~  158 (462)
T COG0114          80 LAGKH-DDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNR  158 (462)
T ss_pred             HcCcc-cCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHH
Confidence            99999 99999999999999999999999999999999998777           9999999999999999999999999


Q ss_pred             hhhhcccccchhhHhhhhhccCCCchhhcc
Q psy16748        217 YLDRRNKKNVDENVLNLSSAGSSDSEEGEE  246 (291)
Q Consensus       217 ~~~r~~~~~~~~~~~~l~~~~~~~~e~~~~  246 (291)
                      +         .|+|.+|.++|..|+++++.
T Consensus       159 L---------iPaL~~L~~~L~~Ka~~~~~  179 (462)
T COG0114         159 L---------IPALKHLIKTLAAKAEEFAD  179 (462)
T ss_pred             h---------HHHHHHHHHHHHHHHHHHhh
Confidence            9         77999999999999999653

>KOG1317|consensus Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3e04_A 490 Crystal Structure Of Human Fumarate Hydratase Lengt 2e-49
1yfm_A 488 Recombinant Yeast Fumarase Length = 488 3e-41
1vdk_A 466 Crystal Structure Of Fumarase From Thermus Thermoph 5e-36
4hgv_A 495 Crystal Structure Of A Fumarate Hydratase Length = 8e-33
3gtd_A 482 2.4 Angstrom Crystal Structure Of Fumarate Hydratas 7e-29
3tv2_A 459 Structure Of A Class Ii Fumarate Hydratase From Bur 2e-28
1fup_A 472 Fumarase With Bound Pyromellitic Acid Length = 472 1e-27
1fuo_A 467 Fumarase C With Bound Citrate Length = 467 2e-27
1kq7_A 467 E315q Mutant Form Of Fumarase C From E.Coli Length 2e-27
1fur_A 467 Fumarase Mutant H188n With Bound Substrate L-Malate 2e-27
2fus_A 467 Mutations Of Fumarase That Distinguish Between The 2e-27
1j3u_A 468 Crystal Structure Of Aspartase From Bacillus Sp. Ym 1e-24
3r6y_A 401 Crystal Structure Of Chymotrypsin-Treated Aspartase 1e-24
1jsw_A 478 Native L-Aspartate Ammonia Lyase Length = 478 2e-19
3rd8_A 489 Crystal Structure Of Fumarate Hydratase Class Ii My 2e-18
3no9_A 475 Crystal Structure Of Apo Fumarate Hydratase From My 6e-18
4apb_A 474 Crystal Structure Of Mycobacterium Tuberculosis Fum 6e-18
4adl_A 495 Crystal Structures Of Rv1098c In Complex With Malat 6e-18
4apa_A 474 Crystal Structure Of Mycobacterium Tuberculosis Fum 6e-18
3rrp_A 471 Crystal Structure Of Fumarate Hydratase Fum From My 2e-17
3qbp_A 478 Crystal Structure Of Fumarase Fum From Mycobacteriu 2e-17
3ocf_A 478 Crystal Structure Of Fumarate Lyase:delta Crystalli 1e-16
3oce_A 474 Crystal Structure Of Fumarate Lyase:delta Crystalli 2e-16
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase Length = 490 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 2/124 (1%)
Query: 65  MAS-SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAA 123
           MAS + +RIE DTFGEL+VPNDKYYGAQTVRST+NF IGG TERMP PVI A G LK+AA
Sbjct: 24  MASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAA 83
Query: 124 AQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAI 183
           A+VN+++GLD K+A+AI KAADEV  GKL  +HFPLV+WQTGSGTQTNMN NEVISNRAI
Sbjct: 84  AEVNQDYGLDPKIANAIMKAADEVAEGKLN-DHFPLVVWQTGSGTQTNMNVNEVISNRAI 142
Query: 184 EILG 187
           E+LG
Sbjct: 143 EMLG 146
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 Back     alignment and structure
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 Back     alignment and structure
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 Back     alignment and structure
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From Rickettsia Prowazekii Length = 482 Back     alignment and structure
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 Back     alignment and structure
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 Back     alignment and structure
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 Back     alignment and structure
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 Back     alignment and structure
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 Back     alignment and structure
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 Back     alignment and structure
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1 Length = 468 Back     alignment and structure
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From Bacillus Sp. Ym55-1 Length = 401 Back     alignment and structure
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase Length = 478 Back     alignment and structure
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii Mycobacterium Smegmatis Length = 489 Back     alignment and structure
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From Mycobacterium Tuberculosis Length = 475 Back     alignment and structure
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase ( Rv1098c) S318c In Complex With Fumarate Length = 474 Back     alignment and structure
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate Length = 495 Back     alignment and structure
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (Rv1098c) S318a In Apo Form Length = 474 Back     alignment and structure
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 Back     alignment and structure
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium Marinum Length = 478 Back     alignment and structure
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis In Native Form Length = 478 Back     alignment and structure
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis Bound To Cobalt Length = 474 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3e04_A 490 Fumarase, fumarate hydratase; TCA cycle, structura 5e-79
1yfm_A 488 Fumarase, YFUM; lyase, krebs cycle, active site wa 2e-77
1vdk_A 466 Fumarase C, fumarate hydratase class II; TCA cycle 2e-75
3gtd_A 482 Fumarase C, fumarate hydratase class II; structura 1e-74
1fur_A 467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 7e-74
3ocf_A 478 Fumarate lyase:delta crystallin; fumarase, brucell 2e-73
3r6q_A 468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 8e-72
4adm_A 495 Fumarase C, fumarate hydratase class II; lyase, tr 3e-71
1jsw_A 478 L-aspartase, L-aspartate ammonia-lyase; amino acid 5e-70
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
 Score =  246 bits (631), Expect = 5e-79
 Identities = 91/125 (72%), Positives = 106/125 (84%), Gaps = 1/125 (0%)

Query: 64  RMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAA 123
             + + +RIE DTFGEL+VPNDKYYGAQTVRST+NF IGG TERMP PVI A G LK+AA
Sbjct: 24  MASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAA 83

Query: 124 AQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAI 183
           A+VN+++GLD K+A+AI KAADEV  GKL  +HFPLV+WQTGSGTQTNMN NEVISNRAI
Sbjct: 84  AEVNQDYGLDPKIANAIMKAADEVAEGKLN-DHFPLVVWQTGSGTQTNMNVNEVISNRAI 142

Query: 184 EILGK 188
           E+LG 
Sbjct: 143 EMLGG 147
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
4hgv_A 495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
3e04_A 490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
3gtd_A 482 Fumarase C, fumarate hydratase class II; structura 100.0
3ocf_A 478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
3r6q_A 468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
4adm_A 495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
1yfm_A 488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
1fur_A 467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1jsw_A 478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
1vdk_A 466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 99.81
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 99.77
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 99.69
1q5n_A 454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 99.58
1dof_A 403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 99.57
3c8t_A 451 Fumarate lyase; structural genomics, PSI-2, protei 99.53
1re5_A 450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 99.52
2ptr_A 462 Adenylosuccinate lyase; mutant-substrate complex; 99.5
2fel_A 359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 99.49
2pfm_A 444 Adenylosuccinate lyase; PURB, purine biosynthesis, 99.48
1c3c_A 429 Protein (adenylosuccinate lyase); purine biosynthe 99.45
3bhg_A 459 Adenylosuccinate lyase; structural G PSI-2, protei 96.41
4eei_A 438 Adenylosuccinate lyase; structural genomics, niaid 96.13
2qga_B 465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 94.35
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 91.27
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 82.84
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=3e-59  Score=453.29  Aligned_cols=167  Identities=46%  Similarity=0.636  Sum_probs=158.4

Q ss_pred             CCCcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHH
Q psy16748         67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAAD  145 (291)
Q Consensus        67 ~~~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~Acd  145 (291)
                      ++++|+|+|+||+++||+|+|||+|||||++||+|||  ++||++||+||++||||||+||.++| ||+++++||++||+
T Consensus        33 m~~~r~e~d~~g~~~vp~~~~~g~qt~ra~~nf~i~~--~~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~~  110 (495)
T 4hgv_A           33 MTSTRTETDTFGPIEVASDRYWGAQAQRSLGNFKIGW--EKQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQ  110 (495)
T ss_dssp             --CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCS--CBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCCeeeecCCCCccCCCccchHHHHHHHHHccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999997  79999999999999999999999999 99999999999999


Q ss_pred             HHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhh
Q psy16748        146 EVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLL  214 (291)
Q Consensus       146 EIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~  214 (291)
                      ||++|++ +||||||+||||||||+|||+||||||||+|++|+++|           |++|||||.|||+++|+.+.++.
T Consensus       111 ei~~g~~-~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~  189 (495)
T 4hgv_A          111 EVIDGKL-DEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVI  189 (495)
T ss_dssp             HHHTTSS-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCch-hhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHH
Confidence            9999999 99999999999999999999999999999999998876           89999999999999999999888


Q ss_pred             chhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748        215 NPYLDRRNKKNVDENVLNLSSAGSSDSEEGE  245 (291)
Q Consensus       215 ~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~  245 (291)
                      +.+         .+.|..|.++|..++++.+
T Consensus       190 ~~L---------~~~L~~L~~~L~~kA~~~~  211 (495)
T 4hgv_A          190 HDL---------LPALKHLHKALEEKVKAFD  211 (495)
T ss_dssp             HTH---------HHHHHHHHHHHHHHHHHHT
T ss_pred             HHH---------HHHHHHHHHHHHHHHHHhc
Confidence            887         5688999999999988865
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 291
d1yfma_ 459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 4e-48
d1vdka_ 460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 3e-44
d1jswa_ 459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 1e-43
d1fuoa_ 456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 4e-43
d1j3ua_ 462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 8e-42
d1q5na_ 444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 8e-12
d1re5a_ 448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 8e-09
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  164 bits (416), Expect = 4e-48
 Identities = 78/117 (66%), Positives = 92/117 (78%), Gaps = 2/117 (1%)

Query: 70  YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKE 129
           +R E D FGE+ VP DKY+GAQT RS  NF IGG  ERMPLP++ A G LKK+AA VN+ 
Sbjct: 2   FRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNES 61

Query: 130 FG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
            G LD K++ AI +AADEV SGKL  +HFPLV++QTGSGTQ+NMN NEVISNRAIEI
Sbjct: 62  LGGLDPKISKAIQQAADEVASGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEI 117
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1yfma_ 459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1jswa_ 459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1vdka_ 460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1j3ua_ 462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1fuoa_ 456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
d1re5a_ 448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 99.11
d1q5na_ 444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 98.91
d1dofa_ 402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 98.42
d1k62b_ 459 Argininosuccinate lyase/delta-crystallin {Human (H 98.32
d1tj7a_ 455 Argininosuccinate lyase/delta-crystallin {Escheric 98.18
d1c3ca_ 429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 98.16
d1tjva_ 449 Argininosuccinate lyase/delta-crystallin {Domestic 97.98
d1f1oa_ 408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 97.94
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-55  Score=418.36  Aligned_cols=167  Identities=54%  Similarity=0.764  Sum_probs=155.2

Q ss_pred             CcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHH
Q psy16748         69 GYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEV  147 (291)
Q Consensus        69 ~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEI  147 (291)
                      +||+|+|+||+++||.|+|||+||+||++||+|||..+++|++||+||++||||||+||.++| ||++.+++|++||+||
T Consensus         1 ~~r~e~d~~g~~~vp~~~~~G~~T~ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~lG~l~~~~a~aI~~a~~ei   80 (459)
T d1yfma_           1 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEV   80 (459)
T ss_dssp             CEEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCccCCcccchhHHHHHHHHCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999987679999999999999999999999999 9999999999999999


Q ss_pred             HcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC----------CCcccCCCcccccchhhHHHHhhchh
Q psy16748        148 ISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV----------LGWFSQNGERLLFLPIADFWQLLNPY  217 (291)
Q Consensus       148 i~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g----------N~~qSsNdtfpt~mhia~~~e~~~~~  217 (291)
                      ++|++ +++||+|+||+|+||++|||+||||||||+|++|+.+|          |++|||||.|||+++|+.+.++.+.+
T Consensus        81 ~~g~~-~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L  159 (459)
T d1yfma_          81 ASGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNEL  159 (459)
T ss_dssp             HHTSS-GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HcCCc-cccccchHHhhccccccccchhhhhHHHHHHHhhccccccccCcchhhhhccchHhhhhhHHHHHHHHHHHHHH
Confidence            99999 99999999999999999999999999999999987665          79999999999999999999998888


Q ss_pred             hhhcccccchhhHhhhhhccCCCchhhc
Q psy16748        218 LDRRNKKNVDENVLNLSSAGSSDSEEGE  245 (291)
Q Consensus       218 ~~r~~~~~~~~~~~~l~~~~~~~~e~~~  245 (291)
                               .+.|..|.++|.+++++.+
T Consensus       160 ---------~~~L~~L~~~L~~kA~e~~  178 (459)
T d1yfma_         160 ---------IPELTNLKNALEAKSKEFD  178 (459)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHHHHHHHHhcc
Confidence                     6789999999999998864
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure