Psyllid ID: psy16753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MNPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVEEEN
Secondary Structure (PSIPRED)
ccccEEHHHHHHHHHHccccccccccEEEEEEccEEccccccccEEEEEEccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccHHHHHHHccccccEEEEEEEccccccHHHHcccEEEEEHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHcccEEEccccccHHHHEHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNPRYFLLFSGIHLLGQRVvhelsdvdgqiLLNGLEVEKNLMVkvsgfvpqhdltvdtlTVHEHMTLMARLKMDRNLHHVERARTVDALLKELgllkcknsVLNVLSGGERKRVALAVQVSQDCSrvvkitdsqprgkwpiSALFITTassveeen
Flexible Loop (DISEMBL)
MNPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVqvsqdcsrvvkitdsqprgkwpisalfittassveeen
Low Complexity Region (SEG)
MNPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVEEEN
Disordered region (IsUnstruct)
****YFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITT********
Disordered Region (DISOPRED)
MNPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVEE**
Disordered Region (DISEMBL)
MNPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVEEEN
Disordered Region (DISPRO)
*NPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVEE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPRYFLLFSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVEEEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
P12428	675	Protein brown OS=Drosophi	yes	N/A	0.634	0.146	0.363	9e-15
Q11180	598	ABC transporter ATP-bindi	yes	N/A	0.615	0.160	0.388	2e-13
P45843	666	Protein scarlet OS=Drosop	no	N/A	0.602	0.141	0.415	2e-13
P10090	687	Protein white OS=Drosophi	no	N/A	0.621	0.141	0.378	1e-12
Q54T02	1159	ABC transporter G family	yes	N/A	0.653	0.088	0.342	2e-12
Q05360	677	Protein white OS=Lucilia	N/A	N/A	0.596	0.137	0.353	4e-12
Q24739	668	Protein brown OS=Drosophi	N/A	N/A	0.634	0.148	0.323	8e-12
Q84TH5	662	ABC transporter G family	yes	N/A	0.596	0.140	0.393	1e-11
Q17320	679	Protein white OS=Ceratiti	N/A	N/A	0.596	0.136	0.353	3e-11
Q55DW4	793	ABC transporter G family	no	N/A	0.596	0.117	0.32	3e-10

>sp|P12428|BROWN_DROME Protein brown OS=Drosophila melanogaster GN=bw PE=2 SV=1

 Score = 79.3 bits (194), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 62/99 (62%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           ++ G ++LNG+ +E++ M ++S F+PQ ++ V T T +EH+  M+  KM R     E+ +
Sbjct: 86  NLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQ 145

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
            V  LL  +GL    ++ +  LSGGERKR++LA ++  D
Sbjct: 146 RVADLLLAVGLRDAAHTRIQQLSGGERKRLSLAEELITD 184

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Brown and white dimerize for the transport of guanine.
Drosophila melanogaster (taxid: 7227)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 7/103 (6%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERA 83
           DV G IL++G    K  + ++S FV QHD+ V T+T  EH+  MARL+M D+     ER 
Sbjct: 49  DVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQ 108

Query: 84  RTVDALLKELGLLKCKNSVLNV------LSGGERKRVALAVQV 120
             V+ +L ++GL KC ++V+ +      LS GE+KR++ A ++
Sbjct: 109 LRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEI 151

Caenorhabditis elegans (taxid: 6239)

>sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 26  VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           V G IL+NG  +    M ++SG+V Q DL + +LTV EH+  MA L++DR +   ER   
Sbjct: 131 VQGDILINGRRIGP-FMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLI 189

Query: 86  VDALLKELGLLKCKNSVL------NVLSGGERKRVALAVQV 120
           +  LL+  GLL    + +       VLSGGERKR+A AV++
Sbjct: 190 IKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVEL 230

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 27  DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
            G  LLNG  V+   M     +V Q DL + +LT  EH+   A ++M R+L + +R   V
Sbjct: 156 SGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARV 215

Query: 87  DALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQD 123
           D +++EL L KC+++++ V      LSGGERKR+A A +   D
Sbjct: 216 DQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTD 258

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q54T02|ABCGO_DICDI ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 67/108 (62%), Gaps = 6/108 (5%)

Query: 23  LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82
           + ++DG++L+NG  V KN   ++SG+V Q D+ + TLT  EH+   A LK+  N+    +
Sbjct: 516 VGNIDGKVLINGAPVGKNFK-RISGYVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIK 574

Query: 83  ARTVDALLKELGLLKCKNSVLNV-----LSGGERKRVALAVQVSQDCS 125
            + V ++L+ELGL +  ++ +       +SGGER+R+++A ++  D S
Sbjct: 575 QQRVASVLEELGLTRVADNPIGTSEKRGISGGERRRLSIATELIVDPS 622

Dictyostelium discoideum (taxid: 44689)

>sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 31  LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 90
           +LNG  V+   M     +V Q DL + +LT  EH+   A ++M R +   ++ + VD ++
Sbjct: 149 MLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQATVRMPRTMTQKQKLQRVDQVI 208

Query: 91  KELGLLKCKNSVLNV------LSGGERKRVALAVQVSQD 123
           ++L L+KC+N+++ V      LSGGERKR+A A +   D
Sbjct: 209 QDLSLIKCQNTIIGVPGRVKGLSGGERKRLAFASEALTD 247

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Lucilia cuprina (taxid: 7375)

>sp|Q24739|BROWN_DROVI Protein brown OS=Drosophila virilis GN=bw PE=2 SV=1

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 60/99 (60%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           ++ G ++LNG+ +E++ M ++S F+ + ++ V T T ++ +  M+  KM R     E+ +
Sbjct: 83  NLTGDVVLNGMAMERDQMTRISSFLREFEINVKTFTAYDDLYFMSHFKMHRRTTKSEKRQ 142

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
            V  LL  +GL    ++ +  LSGGERKR++LA ++  D
Sbjct: 143 AVSDLLLAVGLRDAAHTRIQQLSGGERKRLSLAEELITD 181

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Brown and white dimerize for the transport of guanine.

Drosophila virilis (taxid: 7244)

>sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 6/99 (6%)

Query: 24  SDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
           S++ G+IL+N  ++ K  + K +GFV Q DL    LTV E +  +A L++ R+L    + 
Sbjct: 121 SNLTGKILINDGKITKQTL-KRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKL 179

Query: 84  RTVDALLKELGLLKCKNSV-----LNVLSGGERKRVALA 117
           R  ++++ ELGL KC+N+V     +  +SGGERKRV++A
Sbjct: 180 RAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIA 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q17320|WHITE_CERCA Protein white OS=Ceratitis capitata GN=W PE=2 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 31  LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 90
           +LNG  V+   M     +V Q DL + +LT  EH+   A ++M R++   ++ + VD ++
Sbjct: 151 MLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVI 210

Query: 91  KELGLLKCKNSVLNV------LSGGERKRVALAVQVSQD 123
           ++L L KC+N+++ V      LSGGERKR+A A +   D
Sbjct: 211 QDLSLGKCQNTLIGVPGRVKGLSGGERKRLAFASEALTD 249

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Ceratitis capitata (taxid: 7213)

>sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 7/100 (7%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
           G + LNG + + N+  K+ G+V Q D  + +LTV E +   A+LKM R++   E+ + V 
Sbjct: 179 GTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQ 238

Query: 88  ALLKELGLLKCKNSVLNV-------LSGGERKRVALAVQV 120
            ++ E+GL +C ++++         +SGGER+RV +++++
Sbjct: 239 DIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIEL 278

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
383866342	643	PREDICTED: protein scarlet-like [Megachi	0.596	0.144	0.569	2e-21
357621664	644	putative scarlet [Danaus plexippus]	0.641	0.155	0.51	2e-20
380024007	629	PREDICTED: protein scarlet-like [Apis fl	0.596	0.147	0.516	2e-20
350405171	629	PREDICTED: protein scarlet-like [Bombus	0.615	0.152	0.510	5e-20
340726282	629	PREDICTED: protein scarlet-like [Bombus	0.615	0.152	0.510	9e-20
328719323	552	PREDICTED: protein scarlet-like [Acyrtho	0.698	0.197	0.412	4e-19
328696629	621	PREDICTED: protein scarlet-like [Acyrtho	0.698	0.175	0.456	5e-19
328719312	533	PREDICTED: protein scarlet-like [Acyrtho	0.634	0.185	0.444	7e-19
321460546	558	ABC protein, subfamily ABCG [Daphnia pul	0.608	0.170	0.450	3e-17
328712876	620	PREDICTED: protein scarlet-like [Acyrtho	0.698	0.175	0.456	7e-17

>gi|383866342|ref|XP_003708629.1| PREDICTED: protein scarlet-like [Megachile rotundata]

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/93 (56%), Positives = 67/93 (72%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
           G+ILLNG  ++   M+++SGFVPQ DL +++LTV EHM  MA +KMDR L    R + + 
Sbjct: 105 GEILLNGKPIDTGQMIRISGFVPQTDLAIESLTVLEHMEFMACMKMDRRLRANVRRQRIM 164

Query: 88  ALLKELGLLKCKNSVLNVLSGGERKRVALAVQV 120
            LL ELGL KC NS L+ LSGGERKRV LAVQ+
Sbjct: 165 VLLGELGLGKCGNSKLSSLSGGERKRVTLAVQL 197

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621664|gb|EHJ73425.1| putative scarlet [Danaus plexippus]

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/100 (51%), Positives = 67/100 (67%)

Query: 24  SDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
           S + G ++LNG     +L+ ++SGF+PQ DL++D LTV EHM  MARL MD+      R+
Sbjct: 103 SAMSGYLMLNGRLAGADLIARISGFLPQEDLSIDDLTVSEHMEFMARLMMDKRSTKSIRS 162

Query: 84  RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
           R V+ LL ELG+  C  + L  LSGGERKRVALAVQ+  D
Sbjct: 163 RRVEQLLGELGVANCTRTKLKALSGGERKRVALAVQLLND 202

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024007|ref|XP_003695800.1| PREDICTED: protein scarlet-like [Apis florea]

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/93 (51%), Positives = 66/93 (70%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
           G +LLNG  ++   M+++SGFVPQ DL +++LT+ EHM  MA +KMDR L    R + + 
Sbjct: 93  GDVLLNGKPIDTEQMIRISGFVPQTDLAIESLTIQEHMEFMACMKMDRRLRANFRRQRIT 152

Query: 88  ALLKELGLLKCKNSVLNVLSGGERKRVALAVQV 120
            LL+ELGL KC  + L+ LSGGERKRV LAV++
Sbjct: 153 ILLRELGLAKCTFTKLSALSGGERKRVTLAVEL 185

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405171|ref|XP_003487348.1| PREDICTED: protein scarlet-like [Bombus impatiens]

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/96 (51%), Positives = 67/96 (69%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           +  G +LLNG  ++ + M+++SGFVPQ DL +++LT+ EHM  MA +KMDR L    R +
Sbjct: 90  EATGDVLLNGKPIDTDQMIRISGFVPQMDLAIESLTILEHMEFMACMKMDRRLRANVRRQ 149

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV 120
            +  LL ELGL KC  + L+ LSGGERKRV LAVQ+
Sbjct: 150 RIMVLLGELGLGKCITTKLSALSGGERKRVTLAVQL 185

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726282|ref|XP_003401489.1| PREDICTED: protein scarlet-like [Bombus terrestris]

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/96 (51%), Positives = 67/96 (69%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           +  G +LLNG  ++ + M+++SGFVPQ DL +++LT+ EHM  MA +KMDR L    R +
Sbjct: 90  EATGDVLLNGKPIDTDQMIRISGFVPQMDLAIESLTILEHMEFMACMKMDRRLGANVRRQ 149

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV 120
            +  LL ELGL KC  + L+ LSGGERKRV LAVQ+
Sbjct: 150 RIMVLLGELGLGKCITTKLSALSGGERKRVTLAVQL 185

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719323|ref|XP_001952363.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 74/114 (64%), Gaps = 5/114 (4%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           + +G++LLNG  + + +M+K+SGFVPQHD++ D LT  EH++LMA LK+ R    +E   
Sbjct: 106 NFEGELLLNGQPISEEVMIKISGFVPQHDISFDQLTALEHLSLMANLKVSRKTTKIELKE 165

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD-----CSRVVKITDS 133
            +D ++  LG+ K  ++ ++ LSGGERK++ALAVQ+  D     C  +    DS
Sbjct: 166 HIDKIITTLGMSKFLDTRISFLSGGERKKIALAVQLLNDPPILFCDEITTGLDS 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696629|ref|XP_001944001.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 5/114 (4%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           + +G++LLNG  V + +M+K+SGFVPQHD+T + LT  EH+ LMA LKMDR         
Sbjct: 105 NFEGELLLNGRPVSEEVMIKISGFVPQHDITFEQLTTLEHLYLMANLKMDRRTTKTALKA 164

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD-----CSRVVKITDS 133
            VD  +  LG+ +  ++ L++LSGGERK+VALAVQ+  D     C  V    DS
Sbjct: 165 RVDYTVITLGMREFLDTALSMLSGGERKKVALAVQLLNDPPILFCDEVTTGLDS 218

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719312|ref|XP_001950672.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/99 (44%), Positives = 69/99 (69%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           + +G++LLNG  + + +M+K+SGFVPQHD+  D LT  EH++LMA LK+ R    +E   
Sbjct: 106 NFEGELLLNGQPISEEVMIKISGFVPQHDINFDQLTALEHLSLMANLKVSRKTTKIELKE 165

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
            +D ++  LG+ K  ++ ++ LSGGERK++ALAVQ+  D
Sbjct: 166 HIDKIITTLGMSKFLDTRISFLSGGERKKIALAVQLLND 204

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460546|gb|EFX71587.1| ABC protein, subfamily ABCG [Daphnia pulex]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 7/102 (6%)

Query: 26  VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           ++G+  LNG EV  +++ ++SGFV Q DL + TLTV EH+   A L+MD++L + ER   
Sbjct: 49  INGERYLNGAEVNTDILARISGFVQQDDLFIPTLTVKEHLQFQALLRMDKHLSYEERMNR 108

Query: 86  VDALLKELGLLKCKNSV-------LNVLSGGERKRVALAVQV 120
           VD ++ ELGL++C N+V       L  +SGGERKR+A A +V
Sbjct: 109 VDNVILELGLIQCVNTVIGLPERDLKSISGGERKRLAFASEV 150

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712876|ref|XP_001942858.2| PREDICTED: protein scarlet-like [Acyrthosiphon pisum]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 5/114 (4%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           + +G++LLNG  V +++M+K+SGFV Q D++   LTV E + LMA+LKMDR         
Sbjct: 104 NFNGELLLNGRSVSEDVMIKISGFVAQEDISFVQLTVLEQLKLMAKLKMDRTTSDKVIKD 163

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD-----CSRVVKITDS 133
            +D L   LGL K  NS L  LSGGERK+VALAVQ+  D     C  +    DS
Sbjct: 164 RIDYLAAHLGLNKIINSRLCFLSGGERKKVALAVQLINDPPILFCDEITTGLDS 217

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0000241	675	bw "brown" [Drosophila melanog	0.634	0.146	0.363	1.8e-13
UNIPROTKB|E3LWM9	654	Cre-wht-1 "CRE-WHT-1 protein"	0.737	0.175	0.354	7.6e-13
WB|WBGene00015479	598	wht-1 [Caenorhabditis elegans	0.737	0.192	0.354	1.1e-12
UNIPROTKB|Q11180	598	wht-1 "ABC transporter ATP-bin	0.737	0.192	0.354	1.1e-12
FB|FBgn0003515	666	st "scarlet" [Drosophila melan	0.602	0.141	0.415	3.5e-12
DICTYBASE|DDB_G0282103	1159	abcG24 "ABC transporter G fami	0.653	0.088	0.342	9.5e-12
TAIR|locus:2016089	662	ABCG25 "ATP-binding casette G2	0.596	0.140	0.404	1.2e-11
FB|FBgn0003996	687	w "white" [Drosophila melanoga	0.615	0.139	0.382	1.2e-11
WB|WBGene00021535	684	wht-7 [Caenorhabditis elegans	0.692	0.157	0.333	1.6e-11
UNIPROTKB|A8XZE0	627	wht-1 "Protein CBR-WHT-1" [Cae	0.839	0.208	0.347	2.3e-11

FB|FBgn0000241 bw "brown" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 36/99 (36%), Positives = 62/99 (62%)

Query:    25 DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
             ++ G ++LNG+ +E++ M ++S F+PQ ++ V T T +EH+  M+  KM R     E+ +
Sbjct:    86 NLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQ 145

Query:    85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
              V  LL  +GL    ++ +  LSGGERKR++LA ++  D
Sbjct:   146 RVADLLLAVGLRDAAHTRIQQLSGGERKRLSLAEELITD 184

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0006728 "pteridine biosynthetic process" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)]

 Score = 180 (68.4 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 44/124 (35%), Positives = 73/124 (58%)

Query:    12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
             +++L  R +  L DV G IL++G    K  + ++S FV QHD+ V T+T  EH+  MARL
Sbjct:    93 MNVLTSRNLTNL-DVQGSILIDGKRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 151

Query:    72 KMDRNLHHVERART-VDALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQDC 124
             +M    +  E   T V+ +L ++GL KC ++V+ +      LS GE+KR+A A ++   C
Sbjct:   152 RMGSEYYSEEERETRVNQVLTQMGLQKCADTVIGIPNQLKGLSCGEKKRLAFASEILT-C 210

Query:   125 SRVV 128
              +++
Sbjct:   211 PKIL 214

GO:0016246 "RNA interference" evidence=ISS

WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 44/124 (35%), Positives = 74/124 (59%)

Query:    12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
             +++L  R +  L DV G IL++G    K  + ++S FV QHD+ V T+T  EH+  MARL
Sbjct:    37 MNVLTSRNLTNL-DVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 95

Query:    72 KM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQDC 124
             +M D+     ER   V+ +L ++GL KC ++V+ +      LS GE+KR++ A ++   C
Sbjct:    96 RMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILT-C 154

Query:   125 SRVV 128
              +++
Sbjct:   155 PKIL 158

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q11180 wht-1 "ABC transporter ATP-binding protein/permease wht-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 44/124 (35%), Positives = 74/124 (59%)

Query:    12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
             +++L  R +  L DV G IL++G    K  + ++S FV QHD+ V T+T  EH+  MARL
Sbjct:    37 MNVLTSRNLTNL-DVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 95

Query:    72 KM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQDC 124
             +M D+     ER   V+ +L ++GL KC ++V+ +      LS GE+KR++ A ++   C
Sbjct:    96 RMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILT-C 154

Query:   125 SRVV 128
              +++
Sbjct:   155 PKIL 158

GO:0016246 "RNA interference" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0003515 st "scarlet" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 42/101 (41%), Positives = 60/101 (59%)

Query:    26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
             V G IL+NG  +    M ++SG+V Q DL + +LTV EH+  MA L++DR +   ER   
Sbjct:   131 VQGDILINGRRIGP-FMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLI 189

Query:    86 VDALLKELGLLKCKNSVLN------VLSGGERKRVALAVQV 120
             +  LL+  GLL    + +       VLSGGERKR+A AV++
Sbjct:   190 IKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVEL 230

GO:0006727 "ommochrome biosynthetic process" evidence=NAS;IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0282103 abcG24 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 173 (66.0 bits), Expect = 9.5e-12, P = 9.5e-12
 Identities = 37/108 (34%), Positives = 67/108 (62%)

Query:    23 LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82
             + ++DG++L+NG  V KN   ++SG+V Q D+ + TLT  EH+   A LK+  N+    +
Sbjct:   516 VGNIDGKVLINGAPVGKNFK-RISGYVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIK 574

Query:    83 ARTVDALLKELGLLKCKNSVLNV-----LSGGERKRVALAVQVSQDCS 125
              + V ++L+ELGL +  ++ +       +SGGER+R+++A ++  D S
Sbjct:   575 QQRVASVLEELGLTRVADNPIGTSEKRGISGGERRRLSIATELIVDPS 622

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 40/99 (40%), Positives = 64/99 (64%)

Query:    24 SDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
             S++ G+IL+N  ++ K  + K +GFV Q DL    LTV E +  +A L++ R+L    + 
Sbjct:   121 SNLTGKILINDGKITKQTL-KRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKL 179

Query:    84 RTVDALLKELGLLKCKNSVL-NV----LSGGERKRVALA 117
             R  ++++ ELGL KC+N+V+ N     +SGGERKRV++A
Sbjct:   180 RAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIA 218

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 39/102 (38%), Positives = 59/102 (57%)

Query:    28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
             G  LLNG  V+   M     +V Q DL + +LT  EH+   A ++M R+L + +R   VD
Sbjct:   157 GMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVD 216

Query:    88 ALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQD 123
              +++EL L KC+++++ V      LSGGERKR+A A +   D
Sbjct:   217 QVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTD 258

GO:0006856 "eye pigment precursor transport" evidence=NAS;TAS

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0042441 "eye pigment metabolic process" evidence=TAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0070731 "cGMP transport" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0042401 "cellular biogenic amine biosynthetic process" evidence=IMP

WB|WBGene00021535 wht-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 168 (64.2 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 38/114 (33%), Positives = 67/114 (58%)

Query:    12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
             +++L +R +  L    G + +NG+  E++ M +V  +V Q D  + +LTV EH+  MA+L
Sbjct:   109 LNVLTKRNLSNLK-ATGSVKVNGIRAERSYMRQVCAYVQQDDCFIGSLTVEEHLKFMAKL 167

Query:    72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-----LSGGERKRVALAVQV 120
             KM       E+ R V ++++ LGL K  +S++       +SGGE+KR+A A ++
Sbjct:   168 KMGSEYDLNEQERRVKSVMRSLGLEKIADSIIGTRTRKGISGGEKKRLAFASEI 221

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A8XZE0 wht-1 "Protein CBR-WHT-1" [Caenorhabditis briggsae (taxid:6238)]

 Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 50/144 (34%), Positives = 77/144 (53%)

Query:    12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
             +++L  R +  L DV G IL++G    +  + ++S FV QHD+ V T+T  EH+  MARL
Sbjct:    93 LNVLTSRSLTNL-DVQGSILIDGKRANRWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 151

Query:    72 KMDRNLH-HVERARTVDALLKELGLLKCKNSVL---NVLSGG--ERKR----VALAVQVS 121
             +M    +   ER   VD +L ++GL KC ++V+   N L     ER+R    V  A++  
Sbjct:   152 RMGSEYYSEEERESRVDQVLTQMGLQKCADTVIGIPNQLKDSHVERRRDYRHVVQALRNL 211

Query:   122 QDCSRVVKITDSQPRGKWPISALF 145
              D    V IT  QP  +  + +LF
Sbjct:   212 ADYGMTVIITIHQPSSQ--VYSLF 233

GO:0016246 "RNA interference" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-27
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	5e-20
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-15
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-14
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	1e-12
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-11
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	8e-09
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-08
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-08
pfam00005	119	pfam00005, ABC_tran, ABC transporter	4e-08
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	6e-08
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	9e-08
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	9e-08
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-07
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-06
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	7e-06
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-05
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	4e-05
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-05
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	5e-05
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	6e-05
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-05
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	6e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-04
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-04
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-04
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	6e-04
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	6e-04
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	6e-04
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	8e-04
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	8e-04
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	0.001
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	0.001
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	0.001
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	0.002
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.004
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	0.004
COG1123	539	COG1123, COG1123, ATPase components of various ABC	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  106 bits (267), Expect = 2e-27
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 24  SDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
               G +LLNG+ ++   M  +S +V Q DL + TLTV EH+   A L+M R +   E+ 
Sbjct: 79  VKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR 138

Query: 84  RTVDALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQD 123
             VD +L+ LGL KC N+ + V      LSGGERKR+A A ++  D
Sbjct: 139 ERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 82.3 bits (204), Expect = 5e-20
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 20  VHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
           V       GQIL NG   + +   K   +V Q D+ +  LTV E +T  A L++ R    
Sbjct: 57  VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD 116

Query: 80  VER-ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
             R  R  D LL++L L +   +++  +SGGER+RV++AVQ+  D
Sbjct: 117 AIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 28  GQILLNGLEVEKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           G   +NG  +  +         G+ PQ D   D LTV EH+   ARLK    L   E   
Sbjct: 57  GTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKE 112

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
            V+ LL+ LGL    N     LSGG +++++LA+
Sbjct: 113 EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAI 146

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 6/95 (6%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
           G IL N  +  K ++ K +GFV Q D+    LTV E +   + L++ ++L   E+    +
Sbjct: 125 GTILANNRKPTKQIL-KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAE 183

Query: 88  ALLKELGLLKCKNSVLNV-----LSGGERKRVALA 117
           +++ ELGL KC+N+++       +SGGERKRV++A
Sbjct: 184 SVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218

Length = 659

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 28  GQILLNGLEVEKNLMV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           G+IL+ G +V K      +  G+VPQ       LTV E++   ARL         ER   
Sbjct: 60  GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER--- 116

Query: 86  VDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
           ++ LL+  GL    N  +  LSGG ++R+++A+
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIAL 149

Length = 293

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 35/106 (33%)

Query: 14  LLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 73
           L G+R    +S   G++L+NG  ++K    K+ G+VPQ D+   TLTV E +   A+L+ 
Sbjct: 55  LAGRRTGLGVS---GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR- 110

Query: 74  DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ 119
                                           LSGGERKRV++A++
Sbjct: 111 -------------------------------GLSGGERKRVSIALE 125

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 28  GQILLNGLEVEKNLMV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           G I ++G +V K      +  G++PQ        TV E +  +A LK    +   E    
Sbjct: 54  GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKAR 110

Query: 86  VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           VD +L+ + L       +  LSGG R+RV +A
Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVER 82
           G+I + G  V K       G+VPQ   +VD    +TV +   +    +    R L+  ++
Sbjct: 59  GEIKIFGKPVRKRRKRLRIGYVPQK-SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117

Query: 83  ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            + VD  L+ +G+   ++  +  LSGG+++RV LA
Sbjct: 118 EK-VDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151

Length = 254

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)

Query: 28  GQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVER 82
           G+ILL+  ++ K  M K +    G++PQ       LTV ++  +MA L++ +++L   ER
Sbjct: 59  GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN--IMAVLEIREKDLKKAER 116

Query: 83  ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
              +DALL+E  +   ++S    LSGGER+RV +A
Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151

Length = 243

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 22  ELSDVDGQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 77
            L    G ILL+G +       K+     G V Q       LTV E   L   L+     
Sbjct: 10  LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE--NLFFGLRDK--- 64

Query: 78  HHVERARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALA 117
              E     +  L+ +GL    +   +  LSGG+++RVA+A
Sbjct: 65  ---EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIA 102

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 50.4 bits (120), Expect = 6e-08
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 23   LSDVDGQILLNGLEVEKNL-MVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
            L    G +L+ G ++E NL  V+ S G  PQH++    LTV EH+   A+LK        
Sbjct: 980  LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWE 1036

Query: 81   ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
            E    ++A+L++ GL   +N     LSGG ++++++A+    D   VV
Sbjct: 1037 EAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query: 28  GQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
           G+ILL+G ++ K  M K +    G++PQ       LTV E+  ++A L++ R L   ER 
Sbjct: 55  GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEEN--ILAVLEI-RGLSKKERE 111

Query: 84  RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
             ++ LL+E  +   + S  + LSGGER+RV +A
Sbjct: 112 EKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 18/109 (16%)

Query: 27  DGQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH--- 79
            G++LL+G ++     K L  K+  +VPQ       LTV+E + L+ R       H    
Sbjct: 56  SGEVLLDGKDIASLSPKELAKKL-AYVPQSPSAPFGLTVYE-LVLLGRYP-----HLGLF 108

Query: 80  ----VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDC 124
                E    V+  L+ LGL    +  ++ LSGGER+RV +A  ++Q+ 
Sbjct: 109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157

Length = 258

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVER 82
           G I + G  +EK    K  G+VPQ   ++D    ++V +   M L     + R L   ++
Sbjct: 54  GSIRVFGKPLEK--ERKRIGYVPQR-RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK 110

Query: 83  ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           A+ VD  L+ +GL +  +  +  LSGG+++RV LA
Sbjct: 111 AK-VDEALERVGLSELADRQIGELSGGQQQRVLLA 144

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 27  DGQILLNGLEVEKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLH 78
            G++L++G ++ K  + ++    G V Q+          +       ++ +      NL 
Sbjct: 55  SGEVLVDGKDLTKLSLKELRRKVGLVFQNP---------DDQFFGPTVEEEVAFGLENLG 105

Query: 79  --HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
               E    V+  L+ +GL   ++     LSGG+++RVA+A
Sbjct: 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA 146

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 27  DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
            G  L+NG  ++ +   +  G+V Q DL + T TV E +   A L+  +++   E+   V
Sbjct: 820 GGDRLVNGRPLDSSFQ-RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYV 878

Query: 87  DALLKELGLLKCKNSVLNV----LSGGERKRVALAVQ 119
           + ++K L +    ++V+ V    L+  +RKR+ + V+
Sbjct: 879 EEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 12  IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
           + L+GQ + H++ +          E    L  K  GFV Q  + + TL   E++ L A L
Sbjct: 67  VSLVGQPL-HQMDE----------EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALL 115

Query: 72  KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           + + +      A+   ALL++LGL K  + +   LSGGE++RVALA
Sbjct: 116 RGESSRQSRNGAK---ALLEQLGLGKRLDHLPAQLSGGEQQRVALA 158

Length = 228

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 27  DGQILLNGLEV-EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERAR 84
            G IL  G +  +  +  +  GFV QH      +TV +++    R+K         E   
Sbjct: 56  SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            V  LLK + L    +     LSGG+R+RVALA
Sbjct: 116 KVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 13/99 (13%)

Query: 28  GQILLNGLEVEK---NLMVKVS----GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHH 79
           G++L+NG ++ K     + K+     GFV Q  +L +  LTV E++ L   +        
Sbjct: 60  GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGKSAGRR 118

Query: 80  VERARTVDALLKELGLLKCKNSVL-NVLSGGERKRVALA 117
              A   + LL+ LGL         + LSGG+++RVA+A
Sbjct: 119 KRAA---EELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154

Length = 226

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 18  RVVHELSDVDGQILLNGL---EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD 74
                   V+G I  +G+   E++K+    V  +  + D+    LTV E +   AR K  
Sbjct: 110 NTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YNAETDVHFPHLTVGETLDFAARCKTP 168

Query: 75  RN----LHHVERARTV-DALLKELGLLKCKNSV-----LNVLSGGERKRVALA 117
           +N    +   E A+ + D  +   GL   +N+      +  +SGGERKRV++A
Sbjct: 169 QNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 28  GQILLNGLEVEK-NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
           G+I LNG +  + +   +  GFV QH      LTV +++     L++ ++     +AR V
Sbjct: 55  GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAF--GLEIRKHPKAKIKAR-V 111

Query: 87  DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           + LL+ + L    +   N LSGG+R+RVALA
Sbjct: 112 EELLELVQLEGLGDRYPNQLSGGQRQRVALA 142

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 44  KVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 102
           +  G V Q DL+VD  LT  E++ + ARL     +   ER   +D LL  +GLL+  + +
Sbjct: 73  RRIGIVFQ-DLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128

Query: 103 LNVLSGGERKRVALA 117
           +   SGG R+R+ +A
Sbjct: 129 VKTYSGGMRRRLEIA 143

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 47  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
           G++PQ       L+V+++  LMA L++  +L   +R    + L++E  +   ++S+   L
Sbjct: 81  GYLPQEASIFRRLSVYDN--LMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSL 138

Query: 107 SGGERKRVALA 117
           SGGER+RV +A
Sbjct: 139 SGGERRRVEIA 149

Length = 241

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 24/100 (24%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 26   VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
            ++G I ++G   ++    ++SG+  Q+D+    +TV E +   A L++ + +   E+   
Sbjct: 935  IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF 994

Query: 86   VDALLKELGLLKCKNSVLNV-----LSGGERKRVALAVQV 120
            VD +++ + L   K++++ +     LS  +RKR+ +AV++
Sbjct: 995  VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL 1034

Length = 1470

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 47  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
           GFV Q    +  LT  E++ L   L         ERA     LL+ +GL    N   + L
Sbjct: 85  GFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE---ELLERVGLGDRLNHYPSEL 141

Query: 107 SGGERKRVALA 117
           SGG+++RVA+A
Sbjct: 142 SGGQQQRVAIA 152

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 28  GQILLNGLEV-EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
           G++L++G  V          G+V Q D  +  LTV +++ L   L   + +   E     
Sbjct: 59  GEVLVDGEPVTGPGPDR---GYVFQQDALLPWLTVLDNVALGLEL---QGVPKAEARERA 112

Query: 87  DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           + LL+ +GL   +N+  + LSGG R+RVALA
Sbjct: 113 EELLELVGLSGFENAYPHQLSGGMRQRVALA 143

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 30   ILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89
            IL N  +V +N+     G+ PQ D   D LT  EH+ L ARL   R +   E  +  +  
Sbjct: 2003 ILTNISDVHQNM-----GYCPQFDAIDDLLTGREHLYLYARL---RGVPAEEIEKVANWS 2054

Query: 90   LKELGLLKCKNSVLNVLSGGERKRVALAV 118
            ++ LGL    + +    SGG +++++ A+
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAI 2083

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 22/133 (16%)

Query: 22  ELSDVDGQILLNGLEVEK---NLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNL 77
           ELS   G++ LNG  +       + +    +PQH  L+    TV E +  M R      L
Sbjct: 51  ELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP-FTVEE-VVAMGR--APHGL 106

Query: 78  HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV-VKITDSQPR 136
              E    V A L ++ L          LSGGE++RV LA        RV  ++ +    
Sbjct: 107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA--------RVLAQLWEPDGP 158

Query: 137 GKW-----PISAL 144
            +W     P SAL
Sbjct: 159 PRWLLLDEPTSAL 171

Length = 258

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 28  GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
           G++LL+G  V         G+V Q D  +  LTV +++ L   L+        E      
Sbjct: 58  GEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK---AEARERAK 112

Query: 88  ALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            LL+ +GL   ++   + LSGG R+RVA+A
Sbjct: 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIA 142

Length = 248

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 36/126 (28%)

Query: 25  DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM----------------TLM 68
            V G+I  NG  + + +  K S ++ Q+D+ V  +TV E +                + +
Sbjct: 220 KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSEL 279

Query: 69  ARLKMDRNLH---------------HVERARTVDALLKELGLLKCKNSV-----LNVLSG 108
           AR + D  +                 V+ +   D  LK LGL  CK+++     +  +SG
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG 339

Query: 109 GERKRV 114
           G++KRV
Sbjct: 340 GQKKRV 345

Length = 1470

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 14/106 (13%)

Query: 23  LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD----TLTVHEHMTLMARLKMDRNLH 78
           + +  G ILLNG  ++     K  G+V Q    VD    T +V E + L  +     N  
Sbjct: 50  IKESSGSILLNGKPIKAKERRKSIGYVMQD---VDYQLFTDSVREELLLGLKELDAGN-- 104

Query: 79  HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDC 124
             E+A TV   LK+L L   K      LSGG+++R+A+A  +    
Sbjct: 105 --EQAETV---LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 13/98 (13%)

Query: 28  GQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHH 79
           G I+++GL++         L  KV G V Q       LTV E++TL  +    M +    
Sbjct: 55  GTIIIDGLKLTDDKKNINELRQKV-GMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-EA 112

Query: 80  VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            ERA     LL+++GL    ++    LSGG+++RVA+A
Sbjct: 113 EERAL---ELLEKVGLADKADAYPAQLSGGQQQRVAIA 147

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 14  LLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 73
           +L  R       + G+IL+NG  ++KN   + +G+V Q D+    LTV E +   A L  
Sbjct: 52  VLAGRK--TAGVITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALL-- 106

Query: 74  DRNLHHVERART 85
            R L   +R R 
Sbjct: 107 -RGLSVEQRKRL 117

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 20/113 (17%)

Query: 23  LSDVDGQILLNGLEV----EKNLMVKVSGFVPQHDLTVDTLTVHE--------HMTLMAR 70
           L+   G + L    +     + L  +++  +PQH LT + +TV E         ++L  R
Sbjct: 52  LTPQSGTVFLGDKPISMLSSRQLARRLA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGR 110

Query: 71  LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
           L    +   V +A      +++  +    +  L  LSGG+R+R  LA+ ++QD
Sbjct: 111 LS-AEDNARVNQA------MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156

Length = 255

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 22/101 (21%)

Query: 27  DGQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHH 79
            G+IL++G +V      ++ +       V Q+      +TV+E++    +L  + +    
Sbjct: 57  SGEILIDGRDVTDLPPEKRGI-----AMVFQNYALYPHMTVYENIAFGLKLRGVPKA--- 108

Query: 80  VERARTVDALLKELGL---LKCKNSVLNVLSGGERKRVALA 117
            E  + V  + K LGL   L  K      LSGG+R+RVALA
Sbjct: 109 -EIDKRVKEVAKLLGLEHLLNRK---PLQLSGGQRQRVALA 145

Length = 338

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 15/109 (13%)

Query: 28  GQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-------KMD 74
           G ILL G ++      +   + +  G + QH   ++ LTV E++ L  RL        + 
Sbjct: 57  GSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLL 115

Query: 75  RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
                 ++ R + AL + +GL        + LSGG+++RVA+A  ++Q 
Sbjct: 116 GRFSEEDKERALSAL-ERVGLADKAYQRADQLSGGQQQRVAIARALAQQ 163

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 47  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
           GFV Q    +  LT  E++ L   L+ + +      A+   ALL+ +GL K        L
Sbjct: 91  GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGLGKRLTHYPAQL 147

Query: 107 SGGERKRVALA 117
           SGGE++RVALA
Sbjct: 148 SGGEQQRVALA 158

Length = 228

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 28  GQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81
           G+IL+NG ++ +        + +  G V Q    +   TV+E++ L  R+         E
Sbjct: 57  GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV---IGKPPRE 113

Query: 82  RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
             R V  +L  +GL     ++ + LSGGE++RVA+A
Sbjct: 114 IRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149

Length = 223

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 27  DGQILLNGLEVEKNLMVKVS-------GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
            GQ+ LNG E       K S       G++ Q+   ++  TV E++ L  + K    L  
Sbjct: 52  SGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSK 108

Query: 80  VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            E+       L+++GL       +  LSGGE++RVALA
Sbjct: 109 KEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA 146

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 16/97 (16%)

Query: 28  GQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHV 80
           G+IL++G +V       +N+     G V Q       LTV E++   +    + +     
Sbjct: 55  GEILIDGRDVTGVPPERRNI-----GMVFQDYALFPHLTVAENIAFGLKLRGVPKA---- 105

Query: 81  ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           E    V  LL+ +GL    N   + LSGG+++RVALA
Sbjct: 106 EIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 26/130 (20%)

Query: 28  GQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH---- 79
           G+ILL+   +E    K    KV+ ++PQ       L   E MT+   + + R   H    
Sbjct: 66  GEILLDAQPLESWSSKAFARKVA-YLPQQ------LPAAEGMTVRELVAIGRYPWHGALG 118

Query: 80  ---VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPR 136
                    V+  +  +GL    + +++ LSGGER+R  +A+ V+QD SR + + +    
Sbjct: 119 RFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD-SRCLLLDE---- 173

Query: 137 GKWPISALFI 146
              P SAL I
Sbjct: 174 ---PTSALDI 180

Length = 265

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 75  RNLHHVERARTVDAL---LKELGLLKCKNSVLNVLSGGERKRVALA 117
            +L   E AR +  +   L+ LGL    +   N LSGGER+RV LA
Sbjct: 64  ASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 26  VDGQILLNGLEV-------EKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKMDRN 76
             G+++L+G ++        + L  K    + Q  +T     +T+ + +    RL     
Sbjct: 66  TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--K 123

Query: 77  LHHVERARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQVSQD 123
               E  +    LL+++GL   + ++   + LSGG R+RV +A+ ++  
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172

Length = 539

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.98
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.98
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.96
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.96
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.96
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.95
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.95
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.95
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.95
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.95
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.95
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.95
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.95
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.95
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.95
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.94
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.94
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.94
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.94
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.94
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.94
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.94
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.94
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.94
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.94
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.94
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.94
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.94
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.94
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.94
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.94
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.94
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.94
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.94
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.93
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.93
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.93
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.93
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.93
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.93
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.93
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.93
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.93
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.93
PRK10908	222	cell division protein FtsE; Provisional	99.93
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.93
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.93
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.93
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.93
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.93
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.93
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.93
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.93
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.93
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.93
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.93
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.93
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.93
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.93
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.93
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.93
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.93
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.93
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.93
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.92
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.92
COG4181	228	Predicted ABC-type transport system involved in ly	99.92
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.92
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.92
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.92
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.92
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.92
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.92
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.92
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.92
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.92
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.92
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.92
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.92
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.92
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.92
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.92
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.92
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.92
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.92
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.92
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.91
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.91
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.91
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.91
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.91
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.91
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.91
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.91
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.91
KOG0061|consensus	613		99.91
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.91
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.91
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.91
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.91
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.91
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.91
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.91
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.91
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.91
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.91
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.91
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.91
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.91
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.91
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.91
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.91
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.91
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.91
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.91
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.9
PLN03211	659	ABC transporter G-25; Provisional	99.9
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.9
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.9
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.9
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.9
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.9
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.9
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.9
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.9
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.9
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.9
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.9
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.9
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.9
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.9
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.89
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.89
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.89
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.89
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.89
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.89
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.89
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.89
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.89
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.89
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.89
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.89
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.89
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.89
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.89
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.89
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.89
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.89
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.89
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.89
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.89
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.88
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.88
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.88
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.88
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.88
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.88
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.88
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.88
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.88
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.88
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.88
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.88
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.88
KOG0059|consensus	885		99.88
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.87
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.87
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.87
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.87
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.87
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.87
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.87
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.87
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.86
KOG0058|consensus	716		99.86
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.86
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.86
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.86
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.86
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.86
KOG0055|consensus	1228		99.86
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.86
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.86
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.86
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.86
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.86
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.86
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.86
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.86
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.86
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.86
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.85
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.85
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.85
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.85
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.85
COG4172	534	ABC-type uncharacterized transport system, duplica	99.85
PRK13409	590	putative ATPase RIL; Provisional	99.85
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.85
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.85
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
cd03246	173	ABCC_Protease_Secretion This family represents the	99.85
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.85
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.84
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.84
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.84
COG4172	534	ABC-type uncharacterized transport system, duplica	99.84
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.84
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.84
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.84
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.84
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.84
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.84
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.84
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.83
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.83
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.83
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.83
COG4988	559	CydD ABC-type transport system involved in cytochr	99.83
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.83
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.83
KOG0055|consensus	1228		99.83
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.82
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.82
COG4559	259	ABC-type hemin transport system, ATPase component	99.82
KOG0057|consensus	591		99.82
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.82
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.82
PLN03232	1495	ABC transporter C family member; Provisional	99.81
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.81
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.81
PLN03130	1622	ABC transporter C family member; Provisional	99.81
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.81
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.81
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.81
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.8
PRK11147	635	ABC transporter ATPase component; Reviewed	99.8
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.8
KOG0065|consensus	1391		99.8
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.8
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.8
COG4987	573	CydC ABC-type transport system involved in cytochr	99.8
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.79
PRK13409	590	putative ATPase RIL; Provisional	99.79
PTZ00243	1560	ABC transporter; Provisional	99.79
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.78
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.78
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.77
PLN03073	718	ABC transporter F family; Provisional	99.77
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.75
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.75
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.75
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.75
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.74
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.74
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.73
PLN03232	1495	ABC transporter C family member; Provisional	99.73
PLN03130	1622	ABC transporter C family member; Provisional	99.73
PRK11147	635	ABC transporter ATPase component; Reviewed	99.73
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.71
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.71
PTZ00243	1560	ABC transporter; Provisional	99.7
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.7
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.69
COG0488	530	Uup ATPase components of ABC transporters with dup	99.69
KOG0054|consensus	1381		99.66
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.65
KOG0056|consensus	790		99.65
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.65
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.64
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.64
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.61
KOG0054|consensus	1381		99.59
KOG0065|consensus	1391		99.57
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.55
COG0488	530	Uup ATPase components of ABC transporters with dup	99.55
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.54
PLN03073	718	ABC transporter F family; Provisional	99.54
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.53
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.52
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.52
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.46
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.42
COG4178	604	ABC-type uncharacterized transport system, permeas	99.38
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.36
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.36
KOG0927|consensus	614		99.27
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.25
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.23
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.22
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.2
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.18
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.16
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.14
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.13
KOG0060|consensus	659		99.11
KOG0927|consensus	614		99.1
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.09
KOG0062|consensus	582		99.07
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.02
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.01
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.89
KOG0066|consensus	807		98.82
KOG0062|consensus	582		98.81
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.79
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.75
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.69
KOG0063|consensus	592		98.64
KOG0064|consensus	728		98.64
PHA02562	562	46 endonuclease subunit; Provisional	98.59
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.58
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.51
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.51
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.48
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.42
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.41
PRK10869	553	recombination and repair protein; Provisional	98.37
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.36
PRK01156	895	chromosome segregation protein; Provisional	98.36
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.36
KOG0066|consensus	807		98.35
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.32
PRK03918	880	chromosome segregation protein; Provisional	98.27
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.26
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.23
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.09
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.07
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.0
PRK00064	361	recF recombination protein F; Reviewed	97.99
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	97.97
TIGR00611	365	recf recF protein. All proteins in this family for	97.96
KOG2355|consensus	291		97.88
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.85
PRK14079	349	recF recombination protein F; Provisional	97.85
KOG0063|consensus	592		97.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.82
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	97.68
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.66
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.57
PRK02224	880	chromosome segregation protein; Provisional	97.49
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	97.48
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.4
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	97.14
PRK00409	782	recombination and DNA strand exchange inhibitor pr	97.14
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.89
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.84
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.63
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.1
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.71
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.53
COG4637	373	Predicted ATPase [General function prediction only	94.44
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	93.9
KOG0933|consensus	1174		92.16
PRK13695	174	putative NTPase; Provisional	91.73
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	91.57
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	91.06
cd01128	249	rho_factor Transcription termination factor rho is	90.37
PF13175	415	AAA_15: AAA ATPase domain	89.44
PF13166	712	AAA_13: AAA domain	88.42
KOG0018|consensus	1141		87.39
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	86.27
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	82.31
KOG0964|consensus	1200		82.24

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=2.1e-32  Score=202.51  Aligned_cols=126  Identities=25%  Similarity=0.264  Sum_probs=110.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|+++||.|+..+    ++|+|+++|.++..    ...|+.+|+|||+..+||++|+.||+..+-. .. .+.++.++.+
T Consensus        42 STlLRclN~LE~~----~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~-~v-~~~~k~eA~~  115 (240)
T COG1126          42 STLLRCLNGLEEP----DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-KV-KKLSKAEARE  115 (240)
T ss_pred             HHHHHHHHCCcCC----CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH-HH-cCCCHHHHHH
Confidence            4789999999985    89999999987742    2467889999999999999999999987642 22 2456778888


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++.++++++||.+..|.++.+|||||||||+|||||+.+|++++  +||||++|||-.
T Consensus       116 ~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL--FDEPTSALDPEl  171 (240)
T COG1126         116 KALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML--FDEPTSALDPEL  171 (240)
T ss_pred             HHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe--ecCCcccCCHHH
Confidence            99999999999999999999999999999999999999999998  999999999863

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=1.5e-32  Score=207.36  Aligned_cols=132  Identities=26%  Similarity=0.313  Sum_probs=112.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++|+|+|+..    |++|+|.++|.++...  ...+|||||+..++|..|+.+|+.++.....   ....+..++++++
T Consensus        44 TLLriiAGL~~----p~~G~V~~~g~~v~~p--~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~  114 (248)
T COG1116          44 TLLRLIAGLEK----PTSGEVLLDGRPVTGP--GPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKEL  114 (248)
T ss_pred             HHHHHHhCCCC----CCCceEEECCcccCCC--CCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHH
Confidence            56666666666    5999999999998432  4568999999999999999999998876542   2344556689999


Q ss_pred             HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch------------------hhheeecccc
Q psy16753         90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI------------------SALFITTASS  151 (156)
Q Consensus        90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~------------------~~~~~~~~~~  151 (156)
                      ++.+||....++++++|||||||||+|||||+.+|++++  |||||..+|+.                  +.++||  |+
T Consensus       115 L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL--lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT--Hd  190 (248)
T COG1116         115 LELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL--LDEPFGALDALTREELQDELLRLWEETRKTVLLVT--HD  190 (248)
T ss_pred             HHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE--EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe--CC
Confidence            999999999999999999999999999999999999998  99999999975                  566777  88


Q ss_pred             ccc
Q psy16753        152 VEE  154 (156)
Q Consensus       152 ~~~  154 (156)
                      |+|
T Consensus       191 i~E  193 (248)
T COG1116         191 VDE  193 (248)
T ss_pred             HHH
Confidence            876

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=4.9e-32  Score=204.84  Aligned_cols=124  Identities=23%  Similarity=0.336  Sum_probs=108.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |+||+|.+++.    |++|+|+++|+++...   ..|+.+||+-|+..+||++|+.||+...-.+.   ++++...++++
T Consensus        42 TtLkMINrLie----pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~  114 (309)
T COG1125          42 TTLKMINRLIE----PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRA  114 (309)
T ss_pred             HHHHHHhcccC----CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHH
Confidence            56677777766    5999999999998753   56889999999999999999999998765543   35666777899


Q ss_pred             HHHHHHcCCCc--cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLK--CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~--~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++++.++|++  +.++++++|||||||||++||||+.+|++++  +||||.++||++
T Consensus       115 ~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL--MDEPFgALDpI~  170 (309)
T COG1125         115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL--MDEPFGALDPIT  170 (309)
T ss_pred             HHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe--ecCCccccChhh
Confidence            99999999975  7899999999999999999999999999998  999999999984

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.9e-31  Score=210.91  Aligned_cols=137  Identities=23%  Similarity=0.232  Sum_probs=120.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|+||+|+|++.|    ++|+|+|+|.+++.. +..+.+|+|||+..+||++||++|+.|+...+   .....+..++++
T Consensus        43 STlLr~IAGLe~~----~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~  115 (338)
T COG3839          43 STLLRMIAGLEEP----TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVK  115 (338)
T ss_pred             HHHHHHHhCCCCC----CCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHH
Confidence            3678888888884    999999999999874 55678999999999999999999999987664   234567788999


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch-----------------hhheeeccc
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI-----------------SALFITTAS  150 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~-----------------~~~~~~~~~  150 (156)
                      ++.+.+++++.+++++.+|||||||||+||||++.+|++++  +|||.+.+|+.                 .+..|.||+
T Consensus       116 eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L--~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD  193 (338)
T COG3839         116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL--LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD  193 (338)
T ss_pred             HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE--ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence            99999999999999999999999999999999999999888  99999999954                 355667788


Q ss_pred             cccc
Q psy16753        151 SVEE  154 (156)
Q Consensus       151 ~~~~  154 (156)
                      |+|+
T Consensus       194 q~EA  197 (338)
T COG3839         194 QVEA  197 (338)
T ss_pred             HHHH
Confidence            8875

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.2e-30  Score=195.77  Aligned_cols=126  Identities=29%  Similarity=0.296  Sum_probs=108.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      +++|+|.|++.    |++|+|+++|.++...      ..++++|++||+..+|..+||+||+.|..+-+.  .++.+..+
T Consensus        49 tlLr~I~Gll~----P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~lp~~~i~  122 (263)
T COG1127          49 TLLRLILGLLR----PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR  122 (263)
T ss_pred             HHHHHHhccCC----CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cCCHHHHH
Confidence            56677777777    5899999999998532      356779999999999999999999998765542  45677777


Q ss_pred             HHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+..-++.+||... .++++.+|||||++|++||||++.+|++++  +||||+|+||+++
T Consensus       123 ~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~--~DEPtsGLDPI~a  181 (263)
T COG1127         123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF--LDEPTSGLDPISA  181 (263)
T ss_pred             HHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE--ecCCCCCCCcchH
Confidence            888889999999877 899999999999999999999999999888  9999999999954

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=8.9e-31  Score=208.03  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=110.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|+|++|+|+..|    ++|+|.++|++++.. ..++.+|+|||+..+||++||.+|+.|+....  +........+++.
T Consensus        45 TTlLR~IAGfe~p----~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~  118 (352)
T COG3842          45 TTLLRMIAGFEQP----SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVE  118 (352)
T ss_pred             HHHHHHHhCCCCC----CCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHH
Confidence            4789999999995    899999999999864 45778999999999999999999999997633  2223445678999


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|++++  ||||.+++|.-
T Consensus       119 e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL--LDEPlSaLD~k  170 (352)
T COG3842         119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL--LDEPLSALDAK  170 (352)
T ss_pred             HHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh--hcCcccchhHH
Confidence            99999999999999999999999999999999999999998  99999999943

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.7e-30  Score=200.69  Aligned_cols=126  Identities=23%  Similarity=0.252  Sum_probs=109.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCE---ecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGL---EVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~---~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .+++++|+|+..|    ++|.|.++|+   |.++. ...+.+||+||+..+|+++||.+|+.|+...+. ...+....+.
T Consensus        42 sTlLRiIAGLe~p----~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~~~~~r~  116 (345)
T COG1118          42 STLLRIIAGLETP----DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPSEAEIRA  116 (345)
T ss_pred             HHHHHHHhCcCCC----CCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCChhhHHH
Confidence            4788999999885    8999999999   66653 335779999999999999999999999876551 2234556778


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++.++++.+.|+...++++.+|||||||||++||||+..|++++  ||||++++|..
T Consensus       117 rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL--LDEPf~ALDa~  171 (345)
T COG1118         117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL--LDEPFGALDAK  171 (345)
T ss_pred             HHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe--ecCCchhhhHH
Confidence            89999999999999999999999999999999999999999998  99999999954

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.6e-30  Score=198.07  Aligned_cols=127  Identities=20%  Similarity=0.274  Sum_probs=112.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .||++|+.++..    |++|+|.++|.++...      ..|+.+|++||++.++...||.+|+.|.....   +.++.+.
T Consensus        46 STLiR~iN~Le~----PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei  118 (339)
T COG1135          46 STLLRLINLLER----PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEI  118 (339)
T ss_pred             HHHHHHHhccCC----CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHH
Confidence            367788888877    5999999999988642      35788999999999999999999999988765   3456777


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+||.+..+.++.+|||||||||+|||||+.+|++++  .||||+.|||-+|-
T Consensus       119 ~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL--~DEaTSALDP~TT~  178 (339)
T COG1135         119 KQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILL--CDEATSALDPETTQ  178 (339)
T ss_pred             HHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEE--ecCccccCChHHHH
Confidence            8899999999999999999999999999999999999999999998  99999999998653

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.96  E-value=1.1e-29  Score=184.78  Aligned_cols=126  Identities=25%  Similarity=0.276  Sum_probs=110.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      |++|+|++...    |++|+|+++|.++++.      ..|+++|+|||+..+.+..|+.||+.+..+..   +..+...+
T Consensus        43 TllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~  115 (223)
T COG2884          43 TLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIR  115 (223)
T ss_pred             HHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHH
Confidence            56677777666    5999999999998643      35788999999999999999999999887654   34567788


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.++++.+||.+..+..+.+|||||||||+||||++.+|+++|  .||||..+||..+.
T Consensus       116 ~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl--ADEPTGNLDp~~s~  174 (223)
T COG2884         116 RRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL--ADEPTGNLDPDLSW  174 (223)
T ss_pred             HHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe--ecCCCCCCChHHHH
Confidence            899999999999999999999999999999999999999999887  99999999998443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=2.5e-29  Score=189.06  Aligned_cols=126  Identities=29%  Similarity=0.293  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|+|++|.|+..    |++|+|+++|.+++..       .+++.+||+||+..+.+++|+.||+.+...+..   .....
T Consensus        45 STLLniig~ld~----pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~  117 (226)
T COG1136          45 STLLNLLGGLDK----PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGR  117 (226)
T ss_pred             HHHHHHHhcccC----CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhH
Confidence            367777777777    5999999999988632       235679999999999999999999988765432   22224


Q ss_pred             HHHHHHHHHHHcCCCcccc-CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~-~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+|+.+..+ +++.+|||||||||+|||||+.+|++++  .||||..+|+.++
T Consensus       118 ~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iil--ADEPTgnLD~~t~  178 (226)
T COG1136         118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIIL--ADEPTGNLDSKTA  178 (226)
T ss_pred             HHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEE--eeCccccCChHHH
Confidence            5667889999999987666 8899999999999999999999999988  9999999996643

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=1.7e-29  Score=198.17  Aligned_cols=125  Identities=28%  Similarity=0.392  Sum_probs=109.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++|+|+|++.|    ++|+|.++|.+...  ...++.+||+||++.+++.+|++|++.|.+.++..   ......+++
T Consensus        45 TTllk~l~gl~~p----~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~  117 (293)
T COG1131          45 TTLLKILAGLLKP----TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERI  117 (293)
T ss_pred             HHHHHHHhCCcCC----CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHH
Confidence            4789999999995    89999999999865  35577899999999999999999999998877632   223456789


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++++.++|.+..++++++||+|||||++||+||+++|+++|  |||||+||||.+
T Consensus       118 ~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli--LDEPt~GLDp~~  171 (293)
T COG1131         118 EELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI--LDEPTSGLDPES  171 (293)
T ss_pred             HHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE--ECCCCcCCCHHH
Confidence            999999999986788999999999999999999999999888  999999999873

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=1e-30  Score=191.52  Aligned_cols=130  Identities=28%  Similarity=0.394  Sum_probs=109.2

Q ss_pred             HHHHHhhhhhcCCCCcceEEEECCEecCcccc----cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         11 GIHLLGQRVVHELSDVDGQILLNGLEVEKNLM----VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~----~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .+.+++|++.|    ++|+|.++|.+++..++    +..+||+||++..|..+||.+|+......+.. .......+.++
T Consensus        46 ~Fymi~Glv~~----d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l  120 (243)
T COG1137          46 TFYMIVGLVRP----DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEEL  120 (243)
T ss_pred             EEEEEEEEEec----CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHH
Confidence            44567888885    89999999999987532    34479999999999999999999887766521 11223444568


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheee
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFIT  147 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~  147 (156)
                      +++++.|++.+..+++...||||||+|+.|||||+.+|++++  |||||+|+||.+..+|.
T Consensus       121 ~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL--LDEPFAGVDPiaV~dIq  179 (243)
T COG1137         121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL--LDEPFAGVDPIAVIDIQ  179 (243)
T ss_pred             HHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE--ecCCccCCCchhHHHHH
Confidence            899999999999999999999999999999999999999998  99999999999887764

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.8e-29  Score=195.77  Aligned_cols=127  Identities=25%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      ||+++|...+..+++|++|+|.++|.++.+.       ..++.+++|||+..++|+.||.+|..|+...+   +....+.
T Consensus        65 SGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er  141 (386)
T COG4175          65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAER  141 (386)
T ss_pred             CCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHH
Confidence            4444444444444446999999999998642       23566899999999999999999999987664   4566677


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+.++.+||..+.++++.+|||||||||+|||||+.+|++++  +||||+.|||.
T Consensus       142 ~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlL--MDEaFSALDPL  198 (386)
T COG4175         142 EERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILL--MDEAFSALDPL  198 (386)
T ss_pred             HHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEE--ecCchhhcChH
Confidence            8899999999999999999999999999999999999999999998  99999999986

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.8e-29  Score=187.22  Aligned_cols=131  Identities=25%  Similarity=0.230  Sum_probs=111.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-----cCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~   77 (156)
                      .|++|+|.|++.    |++|+|.++|.++...      .+++.+||+||++.+.+.++|.+|+..+..-+..     .++
T Consensus        44 STLLR~lngl~d----~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfgl  119 (258)
T COG3638          44 STLLRSLNGLVD----PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL  119 (258)
T ss_pred             HHHHHHHhcccC----CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCC
Confidence            478899999777    5999999999887642      4578899999999999999999999876432211     234


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ..++.+..+-++++++|+.+...++..+|||||||||+|||||+++|++++  .|||+++|||.++..
T Consensus       120 fsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL--ADEPvasLDp~~a~~  185 (258)
T COG3638         120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL--ADEPVASLDPESAKK  185 (258)
T ss_pred             CCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe--cCCcccccChhhHHH
Confidence            556677788899999999999999999999999999999999999999998  999999999986643

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2e-28  Score=186.74  Aligned_cols=132  Identities=22%  Similarity=0.205  Sum_probs=105.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcc-cCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMD-RNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.|    .+|+|.+.|.+......+..+|||||...+  -..+||+|.+..+...+.. .....+.+++.
T Consensus        44 STLlK~iLGll~p----~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~  119 (254)
T COG1121          44 STLLKAILGLLKP----SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK  119 (254)
T ss_pred             HHHHHHHhCCCcC----CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHH
Confidence            4788888888885    899999999988755445789999996522  2346999988765222211 11223455788


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ++++++++|+.+..++++.+|||||+|||-|||||+.+|++++  |||||.|+|+.++..+
T Consensus       120 v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll--LDEP~~gvD~~~~~~i  178 (254)
T COG1121         120 VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL--LDEPFTGVDVAGQKEI  178 (254)
T ss_pred             HHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE--ecCCcccCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998  9999999999866543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.3e-28  Score=180.73  Aligned_cols=127  Identities=20%  Similarity=0.285  Sum_probs=113.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|++++.|    ++|+|+++|.+..+.  ..++.+|.++.+..+|..+|++||+.|+++++   ++.....+.++
T Consensus        42 TT~LRmiatlL~P----~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari  114 (245)
T COG4555          42 TTLLRMIATLLIP----DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARI  114 (245)
T ss_pred             hhHHHHHHHhccC----CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHH
Confidence            3789999999995    899999999997543  56889999998888999999999999988775   34566677899


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+.+++.++.|++++++|.||||||+|||||+++|+++|  +|||++|+|.++.+
T Consensus       115 ~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v--lDEP~sGLDi~~~r  170 (245)
T COG4555         115 AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV--LDEPTSGLDIRTRR  170 (245)
T ss_pred             HHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE--EcCCCCCccHHHHH
Confidence            999999999999999999999999999999999999999998  99999999977554

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=5.8e-28  Score=194.02  Aligned_cols=125  Identities=18%  Similarity=0.156  Sum_probs=106.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|+++|.++... ..++.+||+||++.+|+++|+.+|+.++...+   ........+++.
T Consensus        44 STLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~  116 (356)
T PRK11650         44 STLLRMVAGLER----ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVA  116 (356)
T ss_pred             HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHH
Confidence            367888888877    4899999999998643 33467999999999999999999998875432   223444556789


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|+|+.+
T Consensus       117 ~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL--LDEP~s~LD~~~  169 (356)
T PRK11650        117 EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL--FDEPLSNLDAKL  169 (356)
T ss_pred             HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence            99999999999999999999999999999999999999998  999999999663

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.95  E-value=1.3e-27  Score=192.24  Aligned_cols=125  Identities=24%  Similarity=0.302  Sum_probs=106.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc---c----cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL---M----VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~---~----~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++....   .    ++.++|+||++.+|+.+|+.+|+.+.....   ++....
T Consensus        33 STLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~---~~~~~~  105 (363)
T TIGR01186        33 STTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQE  105 (363)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            367788888877    58999999999986421   2    567999999999999999999998875432   233445


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+++.++++.++|....++++.+|||||||||+|||||+.+|+++|  +||||+|+||.+
T Consensus       106 ~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLL--lDEP~saLD~~~  164 (363)
T TIGR01186       106 RKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILL--MDEAFSALDPLI  164 (363)
T ss_pred             HHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence            56688999999999988999999999999999999999999999998  999999999874

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-27  Score=191.22  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|.++|.++... ..++.+||+||+..+|+++|+.+|+.|....+   ........+++.
T Consensus        46 STLLr~IaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~  118 (351)
T PRK11432         46 TTVLRLVAGLEK----PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVK  118 (351)
T ss_pred             HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHH
Confidence            367888888877    4899999999998643 33567999999999999999999999876432   223444567889


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  ||||++|+|+.+
T Consensus       119 ~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL--LDEP~s~LD~~~  171 (351)
T PRK11432        119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL--FDEPLSNLDANL  171 (351)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHH
Confidence            99999999999999999999999999999999999999998  999999999763

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.7e-27  Score=190.40  Aligned_cols=127  Identities=23%  Similarity=0.260  Sum_probs=106.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++...      ..++.+||+||+..+++..|+.+|+.+.....   +......
T Consensus        45 STLlr~I~gl~~----p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~  117 (343)
T TIGR02314        45 STLIRCVNLLER----PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEI  117 (343)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHH
Confidence            367888888877    5899999999998642      13567999999999999999999998765432   2234455


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|  +||||+|+||.++.
T Consensus       118 ~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL--lDEPts~LD~~t~~  177 (343)
T TIGR02314       118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL--CDEATSALDPATTQ  177 (343)
T ss_pred             HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence            6678899999999999999999999999999999999999999998  99999999988554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.95  E-value=1.7e-27  Score=187.93  Aligned_cols=127  Identities=25%  Similarity=0.259  Sum_probs=106.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.|    ++|+|+++|.++...  ..++.+||+||++.+++.+|+.||+.+....+   +.......+++
T Consensus        47 STLl~~l~Gl~~p----~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~  119 (306)
T PRK13537         47 TTTLRMLLGLTHP----DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALV  119 (306)
T ss_pred             HHHHHHHhcCCCC----CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            3788888888874    899999999997542  34677999999999999999999998765443   22333445678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+..++++++||+|||||++||+||+++|++++  |||||+|+||.++.
T Consensus       120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll--LDEPt~gLD~~~~~  175 (306)
T PRK13537        120 PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV--LDEPTTGLDPQARH  175 (306)
T ss_pred             HHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCCcCCCHHHHH
Confidence            899999999988999999999999999999999999999988  99999999987543

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.9e-27  Score=190.90  Aligned_cols=124  Identities=21%  Similarity=0.224  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|.++|+++... ..++.+||+||+..+|+.+|+.+|+.|+...+   ........+++.
T Consensus        44 STLLr~iaGl~~----p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~  116 (353)
T TIGR03265        44 TTLLRIIAGLER----QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVA  116 (353)
T ss_pred             HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            378888888877    4899999999998642 33567999999999999999999999875432   223444566889


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.++|.+..++++.+|||||||||+|||||+.+|+++|  ||||++|+|+.
T Consensus       117 ~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL--LDEP~s~LD~~  168 (353)
T TIGR03265       117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL--LDEPLSALDAR  168 (353)
T ss_pred             HHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHH
Confidence            99999999999999999999999999999999999999998  99999999966

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.95  E-value=2.7e-27  Score=190.43  Aligned_cols=124  Identities=17%  Similarity=0.182  Sum_probs=106.1

Q ss_pred             HHHHHHHhhhhhcCCCCcc--eEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVD--GQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~--G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..|    ++  |+|.++|.++... ..++.+||+||+..+|+.+|+.+|+.|+...+   ........++
T Consensus        45 STLLr~iaGl~~p----~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~  117 (362)
T TIGR03258        45 TTLLRAIAGFVKA----AGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAER  117 (362)
T ss_pred             HHHHHHHhCCCCC----CCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence            3788888888874    78  9999999998643 23567999999999999999999998876432   2234455567


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +.++++.++|.+..++++.+|||||||||+|||||+.+|+++|  ||||++|+|+.
T Consensus       118 v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL--LDEP~s~LD~~  171 (362)
T TIGR03258       118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL--LDEPLSALDAN  171 (362)
T ss_pred             HHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHH
Confidence            8999999999999999999999999999999999999999998  99999999976

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.1e-27  Score=175.75  Aligned_cols=131  Identities=21%  Similarity=0.248  Sum_probs=105.6

Q ss_pred             HHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      |++||+-....... -..+|+|.++|+++...     ..|+.+|+|||.+..|| .|++||+.++.+.+...  + +...
T Consensus        48 T~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~--~-~~ld  123 (253)
T COG1117          48 TLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK--D-KELD  123 (253)
T ss_pred             HHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc--h-HHHH
Confidence            45566555544310 02569999999998643     45888999999999999 89999999998776322  2 5667


Q ss_pred             HHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         84 RTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        84 ~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      +.++..++...|.    +.+++....||||||||++|||||+.+|+++|  +||||++|||+++.-|
T Consensus       124 eiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlL--mDEPtSALDPIsT~kI  188 (253)
T COG1117         124 EIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL--MDEPTSALDPISTLKI  188 (253)
T ss_pred             HHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEE--ecCcccccCchhHHHH
Confidence            7899999999884    45677788999999999999999999999998  9999999999988654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.95  E-value=3.5e-27  Score=185.76  Aligned_cols=126  Identities=23%  Similarity=0.328  Sum_probs=105.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++...  ..++.+||+||++.+++.+|+.|++.+....+   +.......+++
T Consensus        33 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~  105 (302)
T TIGR01188        33 TTTIRMLTTLLR----PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKDEAEERA  105 (302)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            378888888887    4899999999987532  33567999999999999999999998765443   22233445678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+||.++
T Consensus       106 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~gLD~~~~  160 (302)
T TIGR01188       106 EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF--LDEPTTGLDPRTR  160 (302)
T ss_pred             HHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence            899999999988899999999999999999999999999988  9999999998743

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.3e-27  Score=190.16  Aligned_cols=126  Identities=20%  Similarity=0.219  Sum_probs=107.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|+++|+++... ..++.+||+||++.+|+++|+.||+.++...+   ........+++.
T Consensus        59 STLLr~IaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~  131 (377)
T PRK11607         59 STLLRMLAGFEQ----PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVN  131 (377)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            367888888887    4899999999988643 34567999999999999999999998875432   123444566789


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  ||||++|+|+.+.
T Consensus       132 ~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL--LDEP~s~LD~~~r  185 (377)
T PRK11607        132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL--LDEPMGALDKKLR  185 (377)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            99999999999999999999999999999999999999998  9999999997743

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.95  E-value=3.9e-27  Score=177.02  Aligned_cols=126  Identities=21%  Similarity=0.260  Sum_probs=103.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|++|++.+++..|+.+|+.+....+   .......
T Consensus        43 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~  115 (216)
T TIGR00960        43 STFLKLILGIEK----PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDA  115 (216)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHH
Confidence            378888888876    4899999999987431      13567999999998888899999998764432   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       116 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  174 (216)
T TIGR00960       116 NERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLL--ADEPTGNLDPELS  174 (216)
T ss_pred             HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCcCCHHHH
Confidence            5678899999999988899999999999999999999999999988  9999999998744

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.94  E-value=6.1e-27  Score=189.11  Aligned_cols=124  Identities=20%  Similarity=0.184  Sum_probs=105.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|.++|.++... ..++.+||+||+..+|+.+|+.+|+.|+...+   ........+++.
T Consensus        54 STLLr~IaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~  126 (375)
T PRK09452         54 TTVLRLIAGFET----PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVM  126 (375)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHH
Confidence            367888888877    4899999999998643 23567999999999999999999998875432   223334456788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  ||||++|+|+.
T Consensus       127 ~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL--LDEP~s~LD~~  178 (375)
T PRK09452        127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL--LDESLSALDYK  178 (375)
T ss_pred             HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCcCCHH
Confidence            99999999999999999999999999999999999999888  99999999966

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.94  E-value=1.2e-27  Score=183.04  Aligned_cols=132  Identities=23%  Similarity=0.254  Sum_probs=109.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~   84 (156)
                      .|++|+|+|+..|    .+|+|+++|+++...   ..++.+||+||.+...+.+||.|.+.++...+..+ ......+.+
T Consensus        42 STLLk~l~g~l~p----~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~  117 (258)
T COG1120          42 STLLKCLAGLLKP----KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE  117 (258)
T ss_pred             HHHHHHHhccCCC----CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHH
Confidence            4788899998885    899999999998653   45788999999998888999999887664322211 223445666


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      .+.++++.+++.+..++.+.+||||||||+.|||||+++|++++  |||||+.||..-|+.+
T Consensus       118 ~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL--LDEPTs~LDi~~Q~ev  177 (258)
T COG1120         118 IVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL--LDEPTSHLDIAHQIEV  177 (258)
T ss_pred             HHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE--eCCCccccCHHHHHHH
Confidence            89999999999999999999999999999999999999999998  9999999997755543

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.94  E-value=7.7e-27  Score=175.53  Aligned_cols=126  Identities=25%  Similarity=0.288  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|.++|.++....       .++.++|++|++.+++.+|+.+++.+....+   ......
T Consensus        44 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~  116 (218)
T cd03255          44 STLLNILGGLDR----PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKE  116 (218)
T ss_pred             HHHHHHHhCCcC----CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHH
Confidence            367888888876    48999999999875321       2456999999998888899999998765332   122223


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       117 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--LDEP~~~LD~~~~  176 (218)
T cd03255         117 RRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIIL--ADEPTGNLDSETG  176 (218)
T ss_pred             HHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEE--EcCCcccCCHHHH
Confidence            44578899999999888899999999999999999999999999888  9999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=1.1e-26  Score=176.71  Aligned_cols=127  Identities=26%  Similarity=0.309  Sum_probs=103.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|+||++.+++.+|+.+|+.+......  .......
T Consensus        40 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~  113 (235)
T cd03261          40 STLLRLIVGLLR----PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEI  113 (235)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHH
Confidence            367888888876    4899999999987532      235679999999988899999999987643211  1223344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll--lDEPt~~LD~~~~  172 (235)
T cd03261         114 REIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL--YDEPTAGLDPIAS  172 (235)
T ss_pred             HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence            5678889999999888899999999999999999999999999888  9999999997744

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.94  E-value=1.1e-26  Score=174.29  Aligned_cols=126  Identities=25%  Similarity=0.256  Sum_probs=103.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|.++|.++... ..++.++|+||++.+++..|+.+++.+.....   ........+++.
T Consensus        40 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~  112 (213)
T cd03259          40 TTLLRLIAGLER----PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVR  112 (213)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHH
Confidence            367888888876    4899999999987542 23456899999998888899999997754322   122333445688


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       113 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll--lDEPt~~LD~~~~  166 (213)
T cd03259         113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL--LDEPLSALDAKLR  166 (213)
T ss_pred             HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            99999999988899999999999999999999999999888  9999999997743

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.94  E-value=1.2e-26  Score=185.42  Aligned_cols=126  Identities=23%  Similarity=0.250  Sum_probs=105.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++...  ..++.+||+||++.+++.+|+.+++.+....+   ........+++
T Consensus        81 STLl~~L~Gl~~----p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~  153 (340)
T PRK13536         81 STIARMILGMTS----PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVI  153 (340)
T ss_pred             HHHHHHHHcCCC----CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            378888888887    4899999999987532  34567999999999999999999998755433   12233445567


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+||+++|+++|  |||||+||||.++
T Consensus       154 ~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi--LDEPt~gLD~~~r  208 (340)
T PRK13536        154 PSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI--LDEPTTGLDPHAR  208 (340)
T ss_pred             HHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence            889999999988999999999999999999999999999988  9999999998744

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.94  E-value=9.7e-27  Score=186.75  Aligned_cols=129  Identities=19%  Similarity=0.206  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|+++|+++... ..++.++|+||+..+|+.+|+.+|+.+....... .........+++
T Consensus        42 STLLr~IaGl~~----p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  117 (353)
T PRK10851         42 TTLLRIIAGLEH----QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV  117 (353)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence            367888888877    4899999999998643 2346799999999999999999999887543110 112334456688


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+|||||||||+|||||+.+|+++|  +||||+|+|+.++
T Consensus       118 ~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL--LDEP~s~LD~~~r  172 (353)
T PRK10851        118 TQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL--LDEPFGALDAQVR  172 (353)
T ss_pred             HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            999999999999999999999999999999999999999988  9999999997643

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.4e-27  Score=179.50  Aligned_cols=126  Identities=22%  Similarity=0.227  Sum_probs=106.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecC----cccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVE----KNLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~----~~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      |+++++.|++.    |++|+|.++|.++.    ....++.+|||||++. .+...||.+.+.|+....   +.+.....+
T Consensus        45 TL~~~l~GLl~----p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~  117 (235)
T COG1122          45 TLLKLLNGLLK----PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEE  117 (235)
T ss_pred             HHHHHHcCcCc----CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHH
Confidence            56666666666    58999999999876    2356788999999974 456779999999876543   345556788


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++.++++.+++.+..++.+.+|||||||||+||.+|+.+|+++|  |||||+|+||..+.
T Consensus       118 rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili--LDEPta~LD~~~~~  175 (235)
T COG1122         118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL--LDEPTAGLDPKGRR  175 (235)
T ss_pred             HHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE--EcCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999998  99999999987543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.9e-26  Score=175.27  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=103.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------c-cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------M-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++....      . ++.++|+||++.+++.+|+.+|+.+.....   ......
T Consensus        49 STLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~  121 (233)
T PRK11629         49 STLLHLLGGLDT----PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAE  121 (233)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHH
Confidence            378888888876    58999999999875321      1 256999999998888899999998754322   122334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       122 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll--LDEPt~~LD~~~~~  182 (233)
T PRK11629        122 INSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL--ADEPTGNLDARNAD  182 (233)
T ss_pred             HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHHH
Confidence            45678899999999888899999999999999999999999999988  99999999987543

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.3e-26  Score=187.02  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=104.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|+++|.++... ..++.++|+||+..+|+.+|+.+|+.+....+   ........+++.
T Consensus        43 STLL~~iaGl~~----p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~  115 (369)
T PRK11000         43 STLLRMIAGLED----ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVN  115 (369)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHH
Confidence            367888888877    4899999999988542 23456999999999999999999998765432   123334456788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|+|+.+
T Consensus       116 ~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL--LDEPts~LD~~~  168 (369)
T PRK11000        116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL--LDEPLSNLDAAL  168 (369)
T ss_pred             HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence            99999999988999999999999999999999999999998  999999999764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.94  E-value=2.1e-26  Score=173.61  Aligned_cols=124  Identities=25%  Similarity=0.299  Sum_probs=103.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+..    |++|+|.++|.++..  .++.++|++|++.+++..|+.+|+.+....+   ........+.+.+
T Consensus        44 STLl~~l~Gl~~----~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~  114 (220)
T cd03293          44 STLLRIIAGLER----PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEE  114 (220)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            367888888876    489999999998753  3567999999998888899999998764332   1222334457889


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       115 ~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll--LDEPt~~LD~~~~  167 (220)
T cd03293         115 LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL--LDEPFSALDALTR  167 (220)
T ss_pred             HHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--ECCCCCCCCHHHH
Confidence            9999999888899999999999999999999999999888  9999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=7.3e-27  Score=171.05  Aligned_cols=122  Identities=22%  Similarity=0.282  Sum_probs=108.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++++|+..|    ..|.|.++|..++...  ...|.|||+..++|.+++.+|+.|+.+++   +..+....+++.+
T Consensus        45 TTLLnl~AGf~~P----~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q  115 (259)
T COG4525          45 TTLLNLIAGFVTP----SRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQ  115 (259)
T ss_pred             HHHHHHHhcCcCc----ccceEEECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence            3678888888885    8999999999998653  23589999999999999999999998775   4566677788899


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+..+||++..++++.+||||||||+.|||||+.+|+.++  ||||+..+|.-
T Consensus       116 ~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll--LDEPfgAlDa~  166 (259)
T COG4525         116 MLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL--LDEPFGALDAL  166 (259)
T ss_pred             HHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe--ecCchhhHHHH
Confidence            9999999998999999999999999999999999999888  99999999965

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.94  E-value=2e-26  Score=181.43  Aligned_cols=126  Identities=20%  Similarity=0.295  Sum_probs=105.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++...  ..++.+||+||++.+++.+|+.|++.+....+   +.......+++
T Consensus        42 TTLl~~l~Gl~~----~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~  114 (301)
T TIGR03522        42 STTMKIITGYLP----PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRV  114 (301)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            368888888877    5899999999987542  34567999999999999999999998765443   22333445678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+||+++|+++|  |||||+|+||.++
T Consensus       115 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli--LDEPt~gLD~~~~  169 (301)
T TIGR03522       115 EEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI--LDEPTTGLDPNQL  169 (301)
T ss_pred             HHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            899999999998999999999999999999999999999988  9999999998744

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.94  E-value=3.3e-27  Score=171.05  Aligned_cols=124  Identities=23%  Similarity=0.288  Sum_probs=106.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|.|+|...|    .+|+|+++|++.+.. +..+-++++||++.+|..+||.+|+.++.....  .++ ...+++++
T Consensus        39 STLLnLIAGF~~P----~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~  111 (231)
T COG3840          39 STLLNLIAGFETP----ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVE  111 (231)
T ss_pred             HHHHHHHHhccCC----CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHH
Confidence            4789999999995    899999999998753 445668999999999999999999987643221  122 34567899


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .++..+|+..+.++.+.+|||||||||+|||||..+-++++  |||||+.+||.
T Consensus       112 ~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL--LDEPFsALdP~  163 (231)
T COG3840         112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL--LDEPFSALDPA  163 (231)
T ss_pred             HHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE--ecCchhhcCHH
Confidence            99999999999999999999999999999999999999888  99999999986

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.94  E-value=2e-26  Score=173.25  Aligned_cols=126  Identities=22%  Similarity=0.283  Sum_probs=103.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|+++|.++...  ..++.++|+||++.+++..|+.+|+.+....+   .........++
T Consensus        45 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~  117 (218)
T cd03266          45 TTTLRMLAGLLE----PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARL  117 (218)
T ss_pred             HHHHHHHhCCcC----CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            367888888876    4899999999987532  33567999999998888899999998754332   12233445678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~  172 (218)
T cd03266         118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL--LDEPTTGLDVMAT  172 (218)
T ss_pred             HHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCcCCCHHHH
Confidence            899999999988899999999999999999999999999888  9999999998743

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.94  E-value=2.7e-26  Score=172.93  Aligned_cols=126  Identities=25%  Similarity=0.337  Sum_probs=103.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++...  ..++.++|+||++.+++.+|+.+++.+....+   ........+++
T Consensus        40 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~  112 (220)
T cd03265          40 TTTIKMLTTLLK----PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERI  112 (220)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            377888888876    5899999999887532  23456899999998888999999998764332   12233345578


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       113 ~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll--lDEPt~~LD~~~~  167 (220)
T cd03265         113 DELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF--LDEPTIGLDPQTR  167 (220)
T ss_pred             HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCccCCCHHHH
Confidence            899999999988899999999999999999999999999888  9999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.94  E-value=3.2e-26  Score=182.02  Aligned_cols=125  Identities=21%  Similarity=0.188  Sum_probs=104.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|.++|.++... ..++.++|+||+..+|+.+|+.+|+.+....+   ........+++.
T Consensus        10 STLl~~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~   82 (325)
T TIGR01187        10 TTLLRLLAGFEQ----PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAEIKPRVL   82 (325)
T ss_pred             HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHHHHHHHH
Confidence            368888888887    4899999999988542 23567999999999999999999998875432   122333456788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++++.+++.+..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.+
T Consensus        83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lll--LDEP~s~LD~~~  135 (325)
T TIGR01187        83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILL--LDEPLSALDKKL  135 (325)
T ss_pred             HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCccCCHHH
Confidence            99999999988999999999999999999999999999888  999999999763

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.4e-26  Score=183.09  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=104.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++...      ..++.+||+||++.+++..|+.+|+.+.....   .......
T Consensus        45 STLlk~L~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~  117 (343)
T PRK11153         45 STLIRCINLLER----PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEI  117 (343)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHH
Confidence            367888888876    5899999999987532      12467999999999888999999998765432   2233344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl--LDEPts~LD~~~~  176 (343)
T PRK11153        118 KARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL--CDEATSALDPATT  176 (343)
T ss_pred             HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            5678899999999988899999999999999999999999999888  9999999997743

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.6e-26  Score=185.80  Aligned_cols=126  Identities=24%  Similarity=0.290  Sum_probs=104.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++....       .++.++|+||++.+++.+|+.||+.+....+   .+....
T Consensus        68 STLLr~I~Gl~~----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~  140 (400)
T PRK10070         68 STMVRLLNRLIE----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEE  140 (400)
T ss_pred             HHHHHHHHcCCC----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHH
Confidence            367788888776    58999999999985321       1346999999999999999999998765432   223334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       141 ~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL--LDEPts~LD~~~r  200 (400)
T PRK10070        141 RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL--MDEAFSALDPLIR  200 (400)
T ss_pred             HHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHH
Confidence            45678899999999988999999999999999999999999999988  9999999998743

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.94  E-value=3.3e-26  Score=180.29  Aligned_cols=126  Identities=24%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|+++|.++...  ..++.+||+||++.+++.+|+.+++.+....+   ........+++
T Consensus        44 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~  116 (303)
T TIGR01288        44 STIARMLLGMIS----PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVI  116 (303)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            367888888876    4899999999987432  23567999999998888999999997654332   12233344567


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       117 ~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~gLD~~~~  171 (303)
T TIGR01288       117 PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI--LDEPTTGLDPHAR  171 (303)
T ss_pred             HHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence            789999999988899999999999999999999999999988  9999999998754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.94  E-value=3.6e-26  Score=171.44  Aligned_cols=127  Identities=25%  Similarity=0.280  Sum_probs=103.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++...      ..++.++|++|++.+++..|+.+|+.+....+   .......
T Consensus        42 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~  114 (214)
T TIGR02673        42 TTLLKLLYGALT----PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREI  114 (214)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHH
Confidence            367888888876    5899999999987532      23467899999998888899999998764332   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++.+.+||||||||++||+||+.+|+++|  |||||+|+|+.++.
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--LDEPt~~LD~~~~~  174 (214)
T TIGR02673       115 QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL--ADEPTGNLDPDLSE  174 (214)
T ss_pred             HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCcccCCHHHHH
Confidence            5678899999999888899999999999999999999999999988  99999999987543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.94  E-value=4.3e-26  Score=170.94  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+....+   ........+++.
T Consensus        40 STLl~~l~G~~~----~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~  112 (213)
T cd03301          40 TTTLRMIAGLEE----PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVR  112 (213)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            378888888876    4899999999987532 22456999999998888899999997764332   122334456788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       113 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll--lDEPt~~LD~~~~~  167 (213)
T cd03301         113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL--MDEPLSNLDAKLRV  167 (213)
T ss_pred             HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence            89999999888899999999999999999999999999888  99999999987543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.94  E-value=3.2e-26  Score=171.60  Aligned_cols=126  Identities=22%  Similarity=0.261  Sum_probs=103.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|++|++.+++..|+.+|+.+....+   .......
T Consensus        41 STLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~  113 (214)
T cd03292          41 STLLKLIYKEEL----PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREI  113 (214)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHH
Confidence            367888888876    5899999999987532      23467999999999999999999998764332   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  172 (214)
T cd03292         114 RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI--ADEPTGNLDPDTT  172 (214)
T ss_pred             HHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE--EeCCCCcCCHHHH
Confidence            4578899999999888899999999999999999999999999888  9999999998744

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.94  E-value=4.7e-26  Score=171.59  Aligned_cols=126  Identities=27%  Similarity=0.296  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------cc-ceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------MV-KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~~-~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|+..    |++|+|+++|.++....      .+ +.++|++|++.+++..|+.+|+.+....+   ......
T Consensus        45 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~  117 (221)
T TIGR02211        45 STLLHLLGGLDN----PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKE  117 (221)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHH
Confidence            378888888877    48999999999875321      12 56899999998888899999998754322   122223


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.+..++.+.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~  177 (221)
T TIGR02211       118 AKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVL--ADEPTGNLDNNNA  177 (221)
T ss_pred             HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCCCcCCHHHH
Confidence            34567899999999888899999999999999999999999999888  9999999997744

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.94  E-value=3.2e-26  Score=171.38  Aligned_cols=125  Identities=22%  Similarity=0.357  Sum_probs=103.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+..    |++|+|.++|.++.. ..++.++|++|++.+++..|+.+|+.+....+   ........+.+.+
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~  111 (210)
T cd03269          40 TTTIRMILGIIL----PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDE  111 (210)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHH
Confidence            367888888876    589999999998754 33567999999998888899999997754332   1222334567889


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       112 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll--lDEP~~~LD~~~~  164 (210)
T cd03269         112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI--LDEPFSGLDPVNV  164 (210)
T ss_pred             HHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence            9999999888899999999999999999999999999888  9999999997744

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.94  E-value=3.2e-26  Score=171.51  Aligned_cols=126  Identities=26%  Similarity=0.339  Sum_probs=103.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++...  ..++.++|++|++.+++.+|+.+|+.+....+   ........+.+
T Consensus        39 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~  111 (211)
T cd03264          39 TTLMRILATLTP----PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARV  111 (211)
T ss_pred             HHHHHHHhCCCC----CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHH
Confidence            367888888876    4899999999887532  23567899999998888899999998754332   12222344578


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       112 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  166 (211)
T cd03264         112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI--VDEPTAGLDPEER  166 (211)
T ss_pred             HHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            899999999888899999999999999999999999999988  9999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.94  E-value=6.4e-26  Score=170.76  Aligned_cols=126  Identities=30%  Similarity=0.454  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|+++|.++...  ..++.++|++|++.+++..|+.+|+.+....+   ........+++
T Consensus        42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~  114 (220)
T cd03263          42 TTTLKMLTGELR----PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEV  114 (220)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            367888888876    4899999999987532  23566999999998888899999998764432   12233344568


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       115 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~~LD~~~~  169 (220)
T cd03263         115 ELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL--LDEPTSGLDPASR  169 (220)
T ss_pred             HHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCCCCCCHHHH
Confidence            899999999888899999999999999999999999999988  9999999998744

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.93  E-value=1.1e-25  Score=174.74  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=102.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++...   .    .++.++|+||++.+++..|+.+|+.+.....   ......
T Consensus        64 STLl~~L~Gl~~----p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~  136 (269)
T cd03294          64 STLLRCINRLIE----PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAE  136 (269)
T ss_pred             HHHHHHHhcCCC----CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHH
Confidence            378888888877    4899999999987532   1    1356899999998888899999998764332   122333


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       137 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill--LDEPt~~LD~~~~  196 (269)
T cd03294         137 REERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL--MDEAFSALDPLIR  196 (269)
T ss_pred             HHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence            44568889999999988899999999999999999999999999988  9999999998743

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.93  E-value=1.1e-25  Score=170.66  Aligned_cols=126  Identities=27%  Similarity=0.390  Sum_probs=102.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...   . .++.++|+||++.+++.+|+.+|+.+....+   ........+
T Consensus        40 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~  112 (232)
T cd03218          40 TTTFYMIVGLVK----PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREE  112 (232)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHH
Confidence            378888888877    4899999999987532   1 2346899999998899999999998754322   112223445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       113 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~  169 (232)
T cd03218         113 KLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL--LDEPFAGVDPIAV  169 (232)
T ss_pred             HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence            67899999999988899999999999999999999999999988  9999999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.93  E-value=1e-25  Score=166.30  Aligned_cols=127  Identities=22%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...     ..++.++|++|++. .+...|+.+|+.+....+   .......
T Consensus        32 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~---~~~~~~~  104 (190)
T TIGR01166        32 STLLLHLNGLLR----PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNL---GLSEAEV  104 (190)
T ss_pred             HHHHHHHhCCCC----CCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHc---CCCHHHH
Confidence            367888888876    4899999999987421     23456899999973 233579999998754322   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  164 (190)
T TIGR01166       105 ERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL--LDEPTAGLDPAGRE  164 (190)
T ss_pred             HHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence            4567899999999988899999999999999999999999999888  99999999987543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.93  E-value=1.1e-25  Score=171.06  Aligned_cols=128  Identities=20%  Similarity=0.229  Sum_probs=102.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccC-------Cc
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-------LH   78 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~   78 (156)
                      |++++|+|++.    |++|+|+++|.++....    .+..++|+||++.+++.+|+.+++.+.........       ..
T Consensus        41 TLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  116 (236)
T cd03219          41 TLFNLISGFLR----PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE  116 (236)
T ss_pred             HHHHHHcCCCC----CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccccccccc
Confidence            67788888776    58999999999875421    23458999999999999999999987643321100       01


Q ss_pred             HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .....+.+.++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  179 (236)
T cd03219         117 EREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLL--LDEPAAGLNPEET  179 (236)
T ss_pred             HHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            22344578899999999988899999999999999999999999999888  9999999997744

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.93  E-value=8.4e-26  Score=169.26  Aligned_cols=127  Identities=23%  Similarity=0.265  Sum_probs=103.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.    |++|+|+++|.++..     ...++.++|++|++.+++..|+.+|+.+.....  .........
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~  113 (213)
T cd03262          40 STLLRCINLLEE----PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAE  113 (213)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHH
Confidence            367888888876    489999999998742     123567999999998888899999997753211  112233445


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.+++.+..++++.+||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       114 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~~LD~~~~  171 (213)
T cd03262         114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML--FDEPTSALDPELV  171 (213)
T ss_pred             HHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence            678899999999888899999999999999999999999999888  9999999998754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.93  E-value=4.6e-26  Score=170.01  Aligned_cols=122  Identities=24%  Similarity=0.261  Sum_probs=98.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|+++|.++.....++.++|++|++. .+...|+.||+.+.....   .    ...+++.
T Consensus        40 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~  108 (205)
T cd03226          40 TTLAKILAGLIK----ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAE  108 (205)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHH
Confidence            367888888877    489999999998754344567999999964 334679999997654221   1    1124678


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  162 (205)
T cd03226         109 TVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI--FDEPTSGLDYKNM  162 (205)
T ss_pred             HHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCccCCHHHH
Confidence            89999999988899999999999999999999999999888  9999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.93  E-value=1.1e-25  Score=170.97  Aligned_cols=126  Identities=21%  Similarity=0.252  Sum_probs=103.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|+||++.+++.+|+.+|+.+....+   .......
T Consensus        45 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~  117 (233)
T cd03258          45 STLIRCINGLER----PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEI  117 (233)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHH
Confidence            367888888877    4899999999987532      12466899999999888899999997754332   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+.++++.+++.+..++++.+||+|||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--LDEP~~~LD~~~~  176 (233)
T cd03258         118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL--CDEATSALDPETT  176 (233)
T ss_pred             HHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCCCcCCHHHH
Confidence            4568899999999988899999999999999999999999999888  9999999997744

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=8.8e-27  Score=178.39  Aligned_cols=118  Identities=21%  Similarity=0.174  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++|+|+|++.|    ++|.|.++|.-+..       ...++++|||||+..+||++||+.|+.|+...         .
T Consensus        38 Tslin~IaGL~rP----deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~---------~  104 (352)
T COG4148          38 TSLINMIAGLTRP----DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK---------S  104 (352)
T ss_pred             hhHHHHHhccCCc----cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc---------c
Confidence            3789999999996    89999999986532       13468899999999999999999999987421         1


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +...+..++..+|+++.+++++.+|||||||||+|+|||.+.|++++  +|||.+++|-.
T Consensus       105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLL--mDEPLaSLD~~  162 (352)
T COG4148         105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLL--MDEPLASLDLP  162 (352)
T ss_pred             chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeee--ecCchhhcccc
Confidence            33467788999999999999999999999999999999999999888  99999999843

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.93  E-value=1.1e-25  Score=168.56  Aligned_cols=126  Identities=24%  Similarity=0.262  Sum_probs=101.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|++|++. .++..|+.+|+.+.....   .........
T Consensus        41 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~  113 (211)
T cd03225          41 STLLRLLNGLLG----PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEE  113 (211)
T ss_pred             HHHHHHHhcCCC----CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHH
Confidence            378888888877    4899999999987532   23567899999974 356789999997654322   122233445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       114 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  170 (211)
T cd03225         114 RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL--LDEPTAGLDPAGR  170 (211)
T ss_pred             HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            68889999999888899999999999999999999999999888  9999999998743

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.93  E-value=1.3e-25  Score=167.39  Aligned_cols=126  Identities=25%  Similarity=0.296  Sum_probs=102.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|.++|.++...       ..++.++|++|++.+++..|+.+|+.+.....   ......
T Consensus        38 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~  110 (206)
T TIGR03608        38 STLLNIIGLLEK----FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKE  110 (206)
T ss_pred             HHHHHHHhcCCC----CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHH
Confidence            378888888876    4899999999985321       13457999999998888899999998754322   122334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       111 ~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll--lDEPt~~LD~~~~  170 (206)
T TIGR03608       111 KREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL--ADEPTGSLDPKNR  170 (206)
T ss_pred             HHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcCCCCHHHH
Confidence            45678899999999888899999999999999999999999999988  9999999997643

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.93  E-value=1.3e-25  Score=171.24  Aligned_cols=129  Identities=24%  Similarity=0.224  Sum_probs=102.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccC-CcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+....+.... .......+++
T Consensus        42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  117 (239)
T cd03296          42 TTLLRLIAGLER----PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV  117 (239)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHH
Confidence            368888888876    4899999999987532 224568999999988888999999987543221100 0222334567


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+||+.+|+++|  |||||+|+|+.+.
T Consensus       118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEP~~~LD~~~~  172 (239)
T cd03296         118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL--LDEPFGALDAKVR  172 (239)
T ss_pred             HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            889999999888899999999999999999999999999888  9999999997743

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.93  E-value=1.5e-25  Score=169.16  Aligned_cols=125  Identities=20%  Similarity=0.232  Sum_probs=102.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|++|++.+++..|+.+|+.+....+   .......
T Consensus        42 STLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~  114 (222)
T PRK10908         42 STLLKLICGIER----PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDI  114 (222)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHH
Confidence            367888888876    5899999999987531      13567899999998888899999997754332   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .+++.++++.+++.+..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~  172 (222)
T PRK10908        115 RRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL--ADEPTGNLDDAL  172 (222)
T ss_pred             HHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCcCCHHH
Confidence            4567889999999888899999999999999999999999999888  999999999864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.93  E-value=2e-25  Score=168.94  Aligned_cols=127  Identities=26%  Similarity=0.248  Sum_probs=103.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------c-cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------M-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|.++|.++....      . ++.++|++|++.+++..|+.+|+.+....+   ......
T Consensus        50 STLl~~i~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~  122 (228)
T PRK10584         50 STLLAILAGLDD----GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQ  122 (228)
T ss_pred             HHHHHHHHcCCC----CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHH
Confidence            378888888876    48999999999875321      1 246999999998888899999997654322   122334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       123 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~  183 (228)
T PRK10584        123 SRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLF--ADEPTGNLDRQTGD  183 (228)
T ss_pred             HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHHH
Confidence            45678899999999888899999999999999999999999999888  99999999977543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.6e-25  Score=179.82  Aligned_cols=123  Identities=20%  Similarity=0.219  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|.++|.++...       ..++.++|+||++.+|+.+|+.+|+.++....     ....
T Consensus        37 STLl~~iaGl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~  107 (354)
T TIGR02142        37 TTLIRLIAGLTR----PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSE  107 (354)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhH
Confidence            367888888877    4899999999987421       23567999999999999999999998764321     1223


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.+
T Consensus       108 ~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll--LDEPts~LD~~~  166 (354)
T TIGR02142       108 RRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL--MDEPLAALDDPR  166 (354)
T ss_pred             HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCCcCCCHHH
Confidence            34568899999999988999999999999999999999999999888  999999999774

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.93  E-value=2e-25  Score=170.46  Aligned_cols=126  Identities=21%  Similarity=0.333  Sum_probs=103.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..    |++|+|.++|.++...   ..+..++|+||++.+++..|+.+|+.+.....   ........+.
T Consensus        41 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~  113 (242)
T cd03295          41 TTTMKMINRLIE----PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRER  113 (242)
T ss_pred             HHHHHHHhcCCC----CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence            377888888876    5899999999987532   23456899999998888899999998754332   1223344557


Q ss_pred             HHHHHHHcCCCc--cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~--~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+  ..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       114 ~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  171 (242)
T cd03295         114 ADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL--MDEPFGALDPITR  171 (242)
T ss_pred             HHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence            889999999986  7799999999999999999999999999888  9999999997743

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.93  E-value=2.7e-25  Score=169.16  Aligned_cols=126  Identities=26%  Similarity=0.332  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++...  ...+.++|++|++.+++..|+.+|+.+....+   ........+.+
T Consensus        41 STLl~~l~G~~~----p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~  113 (236)
T TIGR03864        41 STLFSLLTRLYV----AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERI  113 (236)
T ss_pred             HHHHHHHhCCcC----CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHH
Confidence            367888888876    5899999999987532  22346899999988888899999997654332   12233344567


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++.+.+|||||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       114 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEP~~~LD~~~~  168 (236)
T TIGR03864       114 AALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLL--LDEPTVGLDPASR  168 (236)
T ss_pred             HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCccCCCHHHH
Confidence            889999999988899999999999999999999999999998  9999999998754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.93  E-value=8.3e-26  Score=168.89  Aligned_cols=122  Identities=20%  Similarity=0.301  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+....+   ..    ..+++.
T Consensus        40 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~  108 (208)
T cd03268          40 TTTMKIILGLIK----PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRID  108 (208)
T ss_pred             HHHHHHHhCCcC----CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHH
Confidence            378888888877    4899999999887532 23456899999998888999999997764322   11    234677


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  162 (208)
T cd03268         109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI--LDEPTNGLDPDGI  162 (208)
T ss_pred             HHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCcccCCHHHH
Confidence            88999999888899999999999999999999999999888  9999999998754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.5e-25  Score=171.49  Aligned_cols=124  Identities=22%  Similarity=0.270  Sum_probs=101.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|+++|.++...  ...++|++|++.+++..|+.+|+.+....+   ........+++.+
T Consensus        41 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~  111 (255)
T PRK11248         41 TTLLNLIAGFVP----YQHGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQ  111 (255)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHH
Confidence            367888888876    4899999999987532  345899999998888899999997654322   1223334457889


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..++++.+||||||||+.||+||+.+|+++|  +||||+|+|+.++
T Consensus       112 ~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll--LDEPt~~LD~~~~  164 (255)
T PRK11248        112 MLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL--LDEPFGALDAFTR  164 (255)
T ss_pred             HHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            9999999888899999999999999999999999999888  9999999998754

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.93  E-value=2.8e-25  Score=168.13  Aligned_cols=131  Identities=31%  Similarity=0.441  Sum_probs=101.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA-   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~-   88 (156)
                      |++++|+|++.+ ..|++|+|+++|.++.....++.++|+||++.+++.+|+.+|+.+................+.+.+ 
T Consensus        48 TLlk~l~G~~~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~  126 (226)
T cd03234          48 TLLDAISGRVEG-GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV  126 (226)
T ss_pred             HHHHHHhCccCC-CCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH
Confidence            678888888761 014899999999987644456779999999998999999999987643321111111122234455 


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++.+++.+..++.+.+||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       127 ~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ill--lDEP~~gLD~~~~  179 (226)
T cd03234         127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI--LDEPTSGLDSFTA  179 (226)
T ss_pred             HHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEE--EeCCCcCCCHHHH
Confidence            8999999888889999999999999999999999999988  9999999997743

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.93  E-value=2.1e-25  Score=180.27  Aligned_cols=126  Identities=22%  Similarity=0.229  Sum_probs=103.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCE----ecCcc---c----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGL----EVEKN---L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~----~i~~~---~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~   77 (156)
                      .|++++|+|++.    |++|+|+++|.    ++...   .    .++.++|+||++.+++..|+.+|+.++....   +.
T Consensus        64 STLlr~L~Gl~~----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~  136 (382)
T TIGR03415        64 SSLLRAVNGLNP----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GM  136 (382)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CC
Confidence            367888888877    58999999996    34321   1    1256999999999999999999998875432   22


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .......++.++++.+++.+..++++.+||||||||++|||||+.+|+++|  +||||+|+||.++
T Consensus       137 ~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL--lDEPts~LD~~~r  200 (382)
T TIGR03415       137 PEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL--MDEPFSALDPLIR  200 (382)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHH
Confidence            334455678899999999999999999999999999999999999999998  9999999998743

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.93  E-value=2.5e-25  Score=167.09  Aligned_cols=124  Identities=26%  Similarity=0.227  Sum_probs=101.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|.++|.++...       ..++.++|++|++.+++..|+.+|+.+.....     ....
T Consensus        37 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~  107 (214)
T cd03297          37 STLLRCIAGLEK----PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNRE  107 (214)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHH
Confidence            367888888876    5899999999986421       23457899999998888899999997654221     1223


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       108 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  167 (214)
T cd03297         108 DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL--LDEPFSALDRALR  167 (214)
T ss_pred             HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            34568899999999888899999999999999999999999999988  9999999997743

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.3e-25  Score=174.32  Aligned_cols=126  Identities=22%  Similarity=0.255  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++...     ..++.+||+||++. .+...|+.+++.+.....   +......
T Consensus        47 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~  119 (287)
T PRK13637         47 STLIQHLNGLLK----PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEI  119 (287)
T ss_pred             HHHHHHHhcCCC----CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHH
Confidence            367788888776    5899999999988531     33567999999863 334579999998754322   2344455


Q ss_pred             HHHHHHHHHHcCCC--ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~--~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.  +..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       120 ~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~lll--lDEPt~gLD~~~~  180 (287)
T PRK13637        120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI--LDEPTAGLDPKGR  180 (287)
T ss_pred             HHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCccCCCHHHH
Confidence            56788999999997  56899999999999999999999999999988  9999999998753

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.93  E-value=1.5e-25  Score=170.80  Aligned_cols=129  Identities=23%  Similarity=0.252  Sum_probs=101.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhh-----cccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-----MDRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~-----~~~~~   77 (156)
                      .|++++|+|++.    |++|+|+++|.++...      ..++.++|+||++.+++..|+.+|+.+.....     .....
T Consensus        41 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  116 (241)
T cd03256          41 STLLRCLNGLVE----PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGL  116 (241)
T ss_pred             HHHHHHHhCCcC----CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhccc
Confidence            367888888876    4899999999987532      23456899999998888899999997643210     00011


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ......+++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       117 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  180 (241)
T cd03256         117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL--ADEPVASLDPASS  180 (241)
T ss_pred             CcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence            112334567889999999888899999999999999999999999999888  9999999998744

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.93  E-value=2.7e-25  Score=166.86  Aligned_cols=127  Identities=19%  Similarity=0.188  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|+++|.++... ..++.++|++|++.+++.+|+.+|+.+......   ........++.
T Consensus        38 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~  110 (213)
T TIGR01277        38 STLLNLIAGFIE----PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVV  110 (213)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHH
Confidence            367888888877    4899999999987532 335669999999998888999999876432111   11222345678


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++.+++.+..++.+.+||+||+||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~~LD~~~~~  165 (213)
T TIGR01277       111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL--LDEPFSALDPLLRE  165 (213)
T ss_pred             HHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence            89999999888899999999999999999999999999888  99999999977443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.93  E-value=3.5e-25  Score=171.76  Aligned_cols=128  Identities=22%  Similarity=0.254  Sum_probs=102.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++...      ..++.++|+||++.+++..|+.+|+.+......  .......
T Consensus        47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~  120 (269)
T PRK11831         47 TTLLRLIGGQIA----PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLL  120 (269)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHH
Confidence            367888888876    4899999999987532      124568999999988888999999976532211  1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       121 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~~  180 (269)
T PRK11831        121 HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM--FDEPFVGQDPITMG  180 (269)
T ss_pred             HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence            4567889999999988899999999999999999999999999888  99999999987543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.6e-25  Score=174.56  Aligned_cols=127  Identities=23%  Similarity=0.256  Sum_probs=103.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...   ..++.++|+||++. .++..|+.+|+.+.....   +.......+
T Consensus        47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~  119 (279)
T PRK13650         47 STTVRLIDGLLE----AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKE  119 (279)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHH
Confidence            367788888876    5899999999988532   23567999999974 567789999998764322   233445556


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++.++++.+++.+..++.+.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       120 ~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl--LDEPt~~LD~~~~~  177 (279)
T PRK13650        120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII--LDEATSMLDPEGRL  177 (279)
T ss_pred             HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence            78899999999988899999999999999999999999999988  99999999987443

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.93  E-value=1.9e-25  Score=167.25  Aligned_cols=126  Identities=23%  Similarity=0.281  Sum_probs=102.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|+..    |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+......  . ......+++.
T Consensus        38 STLl~~l~gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~-~~~~~~~~~~  110 (211)
T cd03298          38 STLLNLIAGFET----PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--K-LTAEDRQAIE  110 (211)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--C-ccHHHHHHHH
Confidence            367888888876    4899999999987542 234669999999998888999999876432110  1 1123345688


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       111 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll--lDEP~~~LD~~~~  164 (211)
T cd03298         111 VALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL--LDEPFAALDPALR  164 (211)
T ss_pred             HHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            99999999988899999999999999999999999999988  9999999997744

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.93  E-value=3.9e-25  Score=167.90  Aligned_cols=127  Identities=21%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.++.....  ..+|++|++.+++..|+.+|+.+...... .........+++.+
T Consensus        25 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~   97 (230)
T TIGR01184        25 STLLNLISGLAQ----PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVL-PDLSKSERRAIVEE   97 (230)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcc-cCCCHHHHHHHHHH
Confidence            367888888876    489999999998764321  24899999988888999999977532111 11223344456889


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus        98 ~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~gLD~~~~~  151 (230)
T TIGR01184        98 HIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL--LDEPFGALDALTRG  151 (230)
T ss_pred             HHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCCcCCCHHHHH
Confidence            9999999988899999999999999999999999999988  99999999987543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.93  E-value=3.3e-25  Score=176.58  Aligned_cols=128  Identities=17%  Similarity=0.128  Sum_probs=102.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      +++++|+|++.    |++|+|+|+|.++...      ..++.++|+||++  .+++.+|+.+++.+....+. .......
T Consensus        62 TLlk~i~Gl~~----p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~  136 (331)
T PRK15079         62 TFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQE  136 (331)
T ss_pred             HHHHHHHCCCC----CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHH
Confidence            67777888776    5899999999998532      1345799999997  57788999999987543321 1133445


Q ss_pred             HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++. ...++++++|||||+||++||+||+.+|+++|  +||||+|||+.++.
T Consensus       137 ~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli--lDEPts~LD~~~~~  198 (331)
T PRK15079        137 VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII--CDEPVSALDVSIQA  198 (331)
T ss_pred             HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence            566788999999995 46799999999999999999999999999888  99999999987553

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=3.3e-25  Score=169.05  Aligned_cols=127  Identities=21%  Similarity=0.255  Sum_probs=102.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.    |++|+|+++|.++...     ..++.++|++|++.+++..|+.+|+.+.....  .........
T Consensus        41 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~  114 (240)
T PRK09493         41 STLLRCINKLEE----ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAE  114 (240)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHH
Confidence            367888888876    5899999999987531     23567899999998888899999997653211  112233344


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       115 ~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~~LD~~~~  172 (240)
T PRK09493        115 KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML--FDEPTSALDPELR  172 (240)
T ss_pred             HHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            567899999999888899999999999999999999999999888  9999999997743

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.93  E-value=3.8e-25  Score=169.53  Aligned_cols=127  Identities=20%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~   77 (156)
                      .|++++|+|++.    |++|+|.++|.++...           ..++.++|+||++.+++..|+.+|+.+.....  ...
T Consensus        43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~  116 (250)
T PRK11264         43 TTLLRCINLLEQ----PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--KGE  116 (250)
T ss_pred             HHHHHHHhcCCC----CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh--cCC
Confidence            367888888876    4899999999987421           23456899999998888899999997643211  112


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ......+++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       117 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lll--LDEPt~~LD~~~~  180 (250)
T PRK11264        117 PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVIL--FDEPTSALDPELV  180 (250)
T ss_pred             CHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            233345568889999999888899999999999999999999999999888  9999999997744

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=1.3e-25  Score=169.18  Aligned_cols=127  Identities=18%  Similarity=0.325  Sum_probs=114.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |.+++|+|++.|    ++|+|.|+|.+++. ..+.+|||+|++..+|+.+|+.|.+.|.+.++   +++..+..+.+...
T Consensus        43 TtfRmILglle~----~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~w  114 (300)
T COG4152          43 TTFRMILGLLEP----TEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAW  114 (300)
T ss_pred             chHHHHhccCCc----cCceEEEcCcchhh-hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHH
Confidence            678999999885    89999999999874 34677999999999999999999999988875   56677888899999


Q ss_pred             HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ++++++.....+++.+||.|++||+.+..|++++|+++|  |||||+|+||+.+.-+
T Consensus       115 Ler~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI--LDEPFSGLDPVN~elL  169 (300)
T COG4152         115 LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI--LDEPFSGLDPVNVELL  169 (300)
T ss_pred             HHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE--ecCCccCCChhhHHHH
Confidence            999999999999999999999999999999999999887  9999999999966543

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.9e-25  Score=170.47  Aligned_cols=129  Identities=22%  Similarity=0.224  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-----ccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-----DRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~   77 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|+||++.+++.+|+.+|+.+......     ....
T Consensus        42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  117 (243)
T TIGR02315        42 STLLRCINRLVE----PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR  117 (243)
T ss_pred             HHHHHHHhCCcC----CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhcc
Confidence            367888888876    4899999999987531      135669999999988888999999875421100     0001


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       118 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  181 (243)
T TIGR02315       118 FSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL--ADEPIASLDPKTS  181 (243)
T ss_pred             ccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            122334568889999999888899999999999999999999999999888  9999999997744

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.93  E-value=2.5e-25  Score=181.03  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=105.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-ccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~   84 (156)
                      .|++|+|+|++.    |++|+|+++|.++..   ...++.+||++|+..+++.+|+.+++.++...+. ..........+
T Consensus        43 STLLk~LaGll~----p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~  118 (402)
T PRK09536         43 TTLLRAINGTLT----PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRA  118 (402)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHH
Confidence            378888888877    489999999998754   2345679999999988889999999876532110 01111234456


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++.++++.+++.+..++++.+||||||||++|||||+++|+++|  |||||+|||+.++.
T Consensus       119 ~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL--LDEPtsgLD~~~~~  176 (402)
T PRK09536        119 AVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL--LDEPTASLDINHQV  176 (402)
T ss_pred             HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence            78999999999988999999999999999999999999999988  99999999987544

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.4e-25  Score=177.82  Aligned_cols=119  Identities=19%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++..       ...++.++|+||+..+|+.+|+.+|+.+....         .
T Consensus        38 STLl~~iaGl~~----p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~  104 (352)
T PRK11144         38 TSLINAISGLTR----PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------S  104 (352)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------h
Confidence            367888888877    489999999998742       12356799999999999999999999765321         1


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.+
T Consensus       105 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL--LDEPts~LD~~~  163 (352)
T PRK11144        105 MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL--MDEPLASLDLPR  163 (352)
T ss_pred             hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHH
Confidence            23567899999999988999999999999999999999999999888  999999999763

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.93  E-value=3.9e-25  Score=167.30  Aligned_cols=130  Identities=20%  Similarity=0.203  Sum_probs=100.4

Q ss_pred             HHHHHHHhhhhhc-CCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVH-ELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~-~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+ ..+|++|+|.++|.++...     ..++.++|+||++.++ ..|+.+|+.+....+.  .......
T Consensus        40 STLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~  116 (227)
T cd03260          40 STLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEEL  116 (227)
T ss_pred             HHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHH
Confidence            4788999999820 0025899999999987431     2356799999998887 7899999987543321  1111223


Q ss_pred             HHHHHHHHHHcCCCccccCc--cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSV--LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~--~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+..+++  +.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       117 ~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  177 (227)
T cd03260         117 DERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL--LDEPTSALDPIST  177 (227)
T ss_pred             HHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            45788999999998776666  59999999999999999999999888  9999999998753

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.92  E-value=2.2e-25  Score=167.13  Aligned_cols=127  Identities=22%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCC--CCCCHHHHHHHHHHhhcc-cCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKMD-RNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|.++|.++.  ..++.++|++|++.++  ...|+.||+.+....... .........++
T Consensus        39 STLl~~l~G~~~----p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~  112 (213)
T cd03235          39 STLLKAILGLLK----PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK  112 (213)
T ss_pred             HHHHHHHcCCCC----CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHH
Confidence            367888888876    58999999998775  2356799999997653  347999999764321100 00111234457


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       113 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  168 (213)
T cd03235         113 VDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL--LDEPFAGVDPKTQ  168 (213)
T ss_pred             HHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            8899999999888899999999999999999999999999998  9999999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.9e-25  Score=172.43  Aligned_cols=127  Identities=20%  Similarity=0.218  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|+..    |++|+|+++|.++...   ..++.++|+||++. .+...|+.+|+.+.....   ........+
T Consensus        47 STLl~~i~G~~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~  119 (279)
T PRK13635         47 STLAKLLNGLLL----PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVE  119 (279)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHH
Confidence            367888888877    5899999999988542   23466999999973 566789999998764332   123344456


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++.++++.++|.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++.
T Consensus       120 ~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~gLD~~~~~  177 (279)
T PRK13635        120 RVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII--LDEATSMLDPRGRR  177 (279)
T ss_pred             HHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence            78899999999988999999999999999999999999999988  99999999987443

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.92  E-value=7.4e-25  Score=167.82  Aligned_cols=126  Identities=19%  Similarity=0.241  Sum_probs=101.5

Q ss_pred             HHHHHHHhhhhhcCCCCc-----ceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHELSDV-----DGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~-----~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~   78 (156)
                      .|++++|+|++.|    +     +|+|+++|.++..     ...++.++|+||++.+++ .|+.+|+.+....+.  ...
T Consensus        41 STLl~~l~G~~~p----~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~  113 (247)
T TIGR00972        41 STLLRSLNRMNDL----VPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKD  113 (247)
T ss_pred             HHHHHHHhccCCC----CcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCC
Confidence            3678888888874    5     9999999998753     123567999999988888 899999987543321  112


Q ss_pred             HHHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         79 HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .....+++.++++.+++.    +..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       114 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  180 (247)
T TIGR00972       114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL--LDEPTSALDPIAT  180 (247)
T ss_pred             HHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            334446788999999997    66789999999999999999999999999888  9999999998754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=2.5e-25  Score=160.07  Aligned_cols=123  Identities=26%  Similarity=0.250  Sum_probs=102.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      |++-+++|+..    |++|+|++.|+++...       ...+.+|+|||...+.|++|..||+.....+...   .....
T Consensus        51 TLl~vlAGLd~----~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~  123 (228)
T COG4181          51 TLLAVLAGLDD----PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADS  123 (228)
T ss_pred             hHHHHHhcCCC----CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccH
Confidence            44555555555    6999999999998542       2346799999999999999999999887766532   22344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ...+++.++.+||.+.++.++.+|||||||||+||||++..|++++  .||||..+|-.
T Consensus       124 ~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf--ADEPTGNLD~~  180 (228)
T COG4181         124 RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF--ADEPTGNLDRA  180 (228)
T ss_pred             HHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe--ccCCCCCcchh
Confidence            5678899999999999999999999999999999999999999887  99999999854

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.1e-25  Score=171.36  Aligned_cols=125  Identities=23%  Similarity=0.194  Sum_probs=100.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      |++++|+|++.    |++|+|+++|.++...   ..++.+||+||++. .+...|+.+|+.+.....   ........++
T Consensus        46 TLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~  118 (274)
T PRK13647         46 TLLLHLNGIYL----PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERR  118 (274)
T ss_pred             HHHHHHhcCCC----CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHH
Confidence            67777777776    5899999999987532   23466999999963 345679999998754321   2233344567


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       119 ~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll--lDEPt~~LD~~~~  174 (274)
T PRK13647        119 VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV--LDEPMAYLDPRGQ  174 (274)
T ss_pred             HHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCCcCCCHHHH
Confidence            8899999999988899999999999999999999999999998  9999999998744

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.2e-25  Score=170.97  Aligned_cols=126  Identities=20%  Similarity=0.236  Sum_probs=102.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|+..    |++|+|+++|.++...   .+++.++|++|++. .++..|+.+|+.+.....   .........
T Consensus        49 STLl~~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~  121 (271)
T PRK13632         49 STISKILTGLLK----PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKD  121 (271)
T ss_pred             HHHHHHHhcCCC----CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHH
Confidence            367888888876    4899999999987532   34567999999974 567789999998754321   122333445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       122 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEP~~gLD~~~~  178 (271)
T PRK13632        122 IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII--FDESTSMLDPKGK  178 (271)
T ss_pred             HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            68899999999988999999999999999999999999999988  9999999998743

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=2.2e-25  Score=166.56  Aligned_cols=123  Identities=21%  Similarity=0.261  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++|+|+|+..+    .+|+|.|+|+|++..    ..+..++||||....|+.+||.||+..+......    ......
T Consensus        43 TTlLkti~Gl~~~----~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~  114 (237)
T COG0410          43 TTLLKTIMGLVRP----RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQER  114 (237)
T ss_pred             HHHHHHHhCCCCC----CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccc
Confidence            4789999999996    799999999999864    2356689999999999999999999876533211    011112


Q ss_pred             HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+++.+.| .|.+..+++..+|||||||.++|||||+.+|++++  ||||+.|+-|.
T Consensus       115 ~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL--LDEPs~GLaP~  170 (237)
T COG0410         115 DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL--LDEPSEGLAPK  170 (237)
T ss_pred             cHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE--ecCCccCcCHH
Confidence            266677777 45677899999999999999999999999999988  99999999986

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.6e-25  Score=172.41  Aligned_cols=126  Identities=17%  Similarity=0.161  Sum_probs=99.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      .|++++|+|+..    |++|+|.++|+++..       ...++.+||+||++. .+...|+.+|+.+.....   .....
T Consensus        47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~  119 (290)
T PRK13634         47 STLLQHLNGLLQ----PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEE  119 (290)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHH
Confidence            367788888776    589999999998742       123467999999863 233569999998764322   22344


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+++.++++.++|. +..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       120 ~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~lll--lDEPt~~LD~~~~  181 (290)
T PRK13634        120 DAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLV--LDEPTAGLDPKGR  181 (290)
T ss_pred             HHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHH
Confidence            4556788999999997 56799999999999999999999999999988  9999999998754

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.92  E-value=9.8e-25  Score=166.53  Aligned_cols=129  Identities=16%  Similarity=0.215  Sum_probs=102.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-----cCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~   79 (156)
                      .|++++|+|++.    |++|+|.++|.++...    ..++.++|++|++.+++.+|+.+|+.+.......     .....
T Consensus        42 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~  117 (242)
T TIGR03411        42 TTMMDVITGKTR----PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS  117 (242)
T ss_pred             HHHHHHHhCCCC----CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccH
Confidence            378888888877    4899999999987532    1234699999999999999999999775321100     00112


Q ss_pred             HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....+++.++++.+++.+..++++.+|||||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~ll--lDEPt~~LD~~~~  179 (242)
T TIGR03411       118 AEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLL--LDEPVAGMTDEET  179 (242)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCccCCCHHHH
Confidence            2345578899999999988899999999999999999999999999888  9999999998854

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=2.2e-25  Score=167.72  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=107.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhc--------cc-C
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM--------DR-N   76 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~--------~~-~   76 (156)
                      |++|+|+|.+.|    ++|+|+|+|++++...    .+..++..||...+|+++||.||+..+...+.        +. .
T Consensus        45 TlfNlitG~~~P----~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~  120 (250)
T COG0411          45 TLFNLITGFYKP----SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRAR  120 (250)
T ss_pred             eeeeeecccccC----CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccch
Confidence            678899999985    8999999999998642    23446788999999999999999987643220        00 0


Q ss_pred             CcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        77 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      .......+++.++++.++|.+..+.+..+||+|+|+|++|||||+.+|++++  ||||.+|+.|..+.+
T Consensus       121 ~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL--LDEPaAGln~~e~~~  187 (250)
T COG0411         121 KEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL--LDEPAAGLNPEETEE  187 (250)
T ss_pred             hhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE--ecCccCCCCHHHHHH
Confidence            1245567789999999999999999999999999999999999999999988  999999999875543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=5.8e-25  Score=164.11  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=101.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|+..    |++|+|.++|.++...  ..++.++|++|++.+++..|+.|++.+....+   ..   ...+++
T Consensus        41 STLl~~l~G~~~----p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~  110 (204)
T PRK13538         41 TSLLRILAGLAR----PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEAL  110 (204)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHH
Confidence            367888888877    5899999999987532  23567899999988888899999998764332   11   223567


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+..
T Consensus       111 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~  166 (204)
T PRK13538        111 WEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWI--LDEPFTAIDKQGVA  166 (204)
T ss_pred             HHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence            889999999888899999999999999999999999999988  99999999977543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=6.3e-25  Score=171.76  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .|++++|+|++.    |++|+|+++|.++...       ..++.+||+||++  .+++ .|+.+|+.+.....   ....
T Consensus        47 STLl~~L~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~  118 (286)
T PRK13646         47 STLIQNINALLK----PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNL  118 (286)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCH
Confidence            367788888776    5899999999987431       2456799999986  3444 59999998764321   2234


Q ss_pred             HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ....+++.++++.+++. +..++.+.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       119 ~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~ill--lDEPt~~LD~~~~~  182 (286)
T PRK13646        119 DEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIV--LDEPTAGLDPQSKR  182 (286)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHHHH
Confidence            44556788999999997 67789999999999999999999999999998  99999999987543

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.3e-25  Score=167.24  Aligned_cols=128  Identities=21%  Similarity=0.339  Sum_probs=103.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...    ..++.++|++|++.+++..|+.+|+.+.....  ..........
T Consensus        43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~  116 (241)
T PRK10895         43 TTTFYMVVGIVP----RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQRED  116 (241)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHH
Confidence            378888888877    4899999999987532    13456999999998888899999997653221  1122233445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.++++.+++.+..++++.+|||||+||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  174 (241)
T PRK10895        117 RANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL--LDEPFAGVDPISVI  174 (241)
T ss_pred             HHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence            78899999999888899999999999999999999999999888  99999999987553

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9.3e-25  Score=166.74  Aligned_cols=126  Identities=21%  Similarity=0.201  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc---------ccccceeeEecCCCCCCCCCCHHHHHHHHH-HhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~   78 (156)
                      .|++++|+|+..    |++|+|.++|.++..         ...++.++|+||++.+++..|+.+|+.+.. ...   +..
T Consensus        42 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~  114 (242)
T PRK11124         42 SSLLRVLNLLEM----PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLS  114 (242)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCC
Confidence            377888888876    589999999998621         123457899999999899999999986432 111   122


Q ss_pred             HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ......++.++++.+++.+..++.+.+||||||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       115 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lli--lDEPt~~LD~~~~  177 (242)
T PRK11124        115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLL--FDEPTAALDPEIT  177 (242)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCcCCHHHH
Confidence            23334568899999999888899999999999999999999999999888  9999999998754

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=8.8e-25  Score=171.04  Aligned_cols=126  Identities=19%  Similarity=0.162  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      .|++++|+|++.    |++|+|+++|.++...       ..++.++|+||++. .+...|+.+|+.+....+   .....
T Consensus        47 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~  119 (287)
T PRK13641         47 STLMQHFNALLK----PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED  119 (287)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHH
Confidence            378888888887    4899999999987421       23456899999963 233579999997654322   12334


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+++.++++.+++. +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       120 ~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLl--LDEPt~gLD~~~~  181 (287)
T PRK13641        120 EAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC--LDEPAAGLDPEGR  181 (287)
T ss_pred             HHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCCCCCCHHHH
Confidence            4556788999999997 67899999999999999999999999999888  9999999998743

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.92  E-value=8.2e-25  Score=164.94  Aligned_cols=128  Identities=22%  Similarity=0.244  Sum_probs=104.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .+++++|+|++.    |++|+|+++|.++...      ..++.++|+||++.+++..|+.+|+.+......  .....+.
T Consensus        45 StLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~  118 (220)
T TIGR02982        45 TTLLTLIGGLRS----VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEA  118 (220)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHH
Confidence            367888888876    5899999999987531      235679999999988888999999987543321  1223344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+.++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       119 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill--lDEP~~~LD~~~~~  178 (220)
T TIGR02982       119 RERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL--ADEPTAALDSKSGR  178 (220)
T ss_pred             HHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCcCCHHHHH
Confidence            5678899999999988899999999999999999999999999988  99999999987643

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.92  E-value=7.6e-25  Score=165.01  Aligned_cols=124  Identities=19%  Similarity=0.247  Sum_probs=99.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++....    .++.++|+||++.+++.+|+.+|+.+......     .....+
T Consensus        40 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~  110 (222)
T cd03224          40 TTLLKTIMGLLP----PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKA  110 (222)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHH
Confidence            367888888876    58999999999875321    24568999999988999999999987643321     112334


Q ss_pred             HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++++.+ ++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       111 ~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  168 (222)
T cd03224         111 RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLL--LDEPSEGLAPKIV  168 (222)
T ss_pred             HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCcccCCHHHH
Confidence            566778888 57777899999999999999999999999999998  9999999997743

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.92  E-value=1.6e-24  Score=166.86  Aligned_cols=127  Identities=19%  Similarity=0.174  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc----------------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhh
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----------------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK   72 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----------------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~   72 (156)
                      .|++++|+|++.    |++|+|+++|.++..                ...++.++|+||++.+++..|+.||+.+.....
T Consensus        45 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~  120 (257)
T PRK10619         45 STFLRCINFLEK----PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV  120 (257)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh
Confidence            367888888876    589999999988742                123467899999999888899999997643211


Q ss_pred             cccCCcHHHHHHHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         73 MDRNLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        73 ~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .  ........+++.++++.+++.+.. ++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       121 ~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  188 (257)
T PRK10619        121 L--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL--FDEPTSALDPELV  188 (257)
T ss_pred             C--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            1  122334456788999999998764 88899999999999999999999999888  9999999998754

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.92  E-value=2.4e-24  Score=163.99  Aligned_cols=126  Identities=21%  Similarity=0.223  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .+++++|+|+..    |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+.....   ........+.+.
T Consensus        39 StLl~~l~G~~~----p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~  111 (235)
T cd03299          39 SVLLETIAGFIK----PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVL  111 (235)
T ss_pred             HHHHHHHhCCcC----CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            367888888877    5899999999987542 23567999999998888899999997654322   112233445678


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||+||+||++||+|++.+|++++  +||||+|+|+.++
T Consensus       112 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~gLD~~~~  165 (235)
T cd03299         112 EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL--LDEPFSALDVRTK  165 (235)
T ss_pred             HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE--ECCCcccCCHHHH
Confidence            89999999988899999999999999999999999999888  9999999997754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.92  E-value=5.1e-25  Score=165.73  Aligned_cols=121  Identities=21%  Similarity=0.229  Sum_probs=94.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      |+.++|+|+..    |++|+|+++|.+..+.    ..++.+.+|||++.  +-|..|+.+.+......+   +..  +..
T Consensus        48 TL~r~l~Gl~~----p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~--~~~  118 (252)
T COG1124          48 TLARLLAGLEK----PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLS--KSQ  118 (252)
T ss_pred             HHHHHHhcccC----CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---Ccc--HHH
Confidence            45555556555    6999999999887643    24567899999974  468889999887655432   222  233


Q ss_pred             HHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         84 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        84 ~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +++.++++.+||. .++++++.+|||||+||++|||||+.+|+++|  +||||++||+.
T Consensus       119 ~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI--lDEptSaLD~s  175 (252)
T COG1124         119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI--LDEPTSALDVS  175 (252)
T ss_pred             HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE--ecCchhhhcHH
Confidence            4589999999997 46799999999999999999999999999888  99966666643

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9.6e-25  Score=169.81  Aligned_cols=126  Identities=25%  Similarity=0.232  Sum_probs=102.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.    |++|+|+++|.++...    ..++.++|++|++. .+...|+.+|+.+.....   ........
T Consensus        42 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~  114 (274)
T PRK13644         42 STLALHLNGLLR----PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIR  114 (274)
T ss_pred             HHHHHHHhcCCC----CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHH
Confidence            367888888876    5899999999987531    23466999999975 356689999997654322   12344455


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.+++.+..++++.+||+|||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       115 ~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~gLD~~~~  172 (274)
T PRK13644        115 KRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI--FDEVTSMLDPDSG  172 (274)
T ss_pred             HHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            678899999999988899999999999999999999999999998  9999999998754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.2e-24  Score=171.72  Aligned_cols=126  Identities=19%  Similarity=0.155  Sum_probs=99.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc---------------------------ccccceeeEecCCC-CCCCCCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---------------------------NLMVKVSGFVPQHD-LTVDTLT   60 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---------------------------~~~~~~ig~v~Q~~-~~~~~lt   60 (156)
                      .|++++|+|++.    |++|+|+++|.+...                           ...++.+||+||++ ..+...|
T Consensus        47 STLl~~L~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~t  122 (305)
T PRK13651         47 TTFIEHLNALLL----PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT  122 (305)
T ss_pred             HHHHHHHhCCCC----CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccccccc
Confidence            367788888776    589999999876421                           12356789999985 2344579


Q ss_pred             HHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753         61 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW  139 (156)
Q Consensus        61 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~  139 (156)
                      +.+++.|.....   +.......+++.++++.++|. +..++++.+||||||||++||+||+.+|+++|  |||||+|+|
T Consensus       123 v~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLl--LDEPt~~LD  197 (305)
T PRK13651        123 IEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLV--FDEPTAGLD  197 (305)
T ss_pred             HHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCC
Confidence            999998764322   233445566789999999996 67899999999999999999999999999988  999999999


Q ss_pred             chhh
Q psy16753        140 PISA  143 (156)
Q Consensus       140 ~~~~  143 (156)
                      +.++
T Consensus       198 ~~~~  201 (305)
T PRK13651        198 PQGV  201 (305)
T ss_pred             HHHH
Confidence            8744

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.92  E-value=2.2e-24  Score=164.41  Aligned_cols=126  Identities=20%  Similarity=0.215  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEec-CCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~-Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|.++|.++..  ...++.++|++ |.+.+++.+|+.+++.+....+   ........+.
T Consensus        61 STLl~~i~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~  133 (236)
T cd03267          61 TTTLKILSGLLQ----PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKR  133 (236)
T ss_pred             HHHHHHHhCCcC----CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence            378888888877    489999999987642  23356789998 5566778899999987754432   1223334456


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..++++.+||+|||||+.||+|++.+|+++|  +||||+|+|+.++
T Consensus       134 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~  189 (236)
T cd03267         134 LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILF--LDEPTIGLDVVAQ  189 (236)
T ss_pred             HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence            7789999999888899999999999999999999999999888  9999999998743

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.92  E-value=2.9e-24  Score=163.23  Aligned_cols=127  Identities=24%  Similarity=0.209  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.|    ++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+....+   ........+.+.
T Consensus        40 STLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~  112 (232)
T cd03300          40 TTLLRLIAGFETP----TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVA  112 (232)
T ss_pred             HHHHHHHhcCCCC----CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            3788888888874    899999999987542 23456899999998888899999997654332   122334455778


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++.+++.+..++.+.+||+||+||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll--lDEP~~gLD~~~~~  167 (232)
T cd03300         113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL--LDEPLGALDLKLRK  167 (232)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence            89999999988999999999999999999999999999988  99999999977543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.1e-24  Score=165.40  Aligned_cols=126  Identities=20%  Similarity=0.243  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+.....  ... .....+++.
T Consensus        39 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~  111 (232)
T PRK10771         39 STLLNLIAGFLT----PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLH  111 (232)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHH
Confidence            367888888876    4899999999987532 12356899999998888899999997642111  011 123345688


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       112 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEP~~gLD~~~~  165 (232)
T PRK10771        112 AIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL--LDEPFSALDPALR  165 (232)
T ss_pred             HHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            99999999988899999999999999999999999999998  9999999998643

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.7e-24  Score=169.47  Aligned_cols=125  Identities=19%  Similarity=0.197  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .|++++|+|++.    |++|+|+++|.++..       ...++.+||+||++  .++. .|+.+++.|.....   +...
T Consensus        46 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~  117 (288)
T PRK13643         46 STLLQHLNGLLQ----PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPK  117 (288)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCH
Confidence            367778888776    589999999998742       12356799999986  4444 69999998764322   2233


Q ss_pred             HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....+++.++++.+++. ...++.+.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~ill--LDEPt~gLD~~~~  180 (288)
T PRK13643        118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV--LDEPTAGLDPKAR  180 (288)
T ss_pred             HHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEE--EECCccCCCHHHH
Confidence            44556788999999996 46789999999999999999999999999888  9999999998754

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.92  E-value=2.3e-24  Score=162.85  Aligned_cols=127  Identities=21%  Similarity=0.189  Sum_probs=97.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      .|++++|+|++.    |++|+|.++|.++...      ..++.++|++|++  .+++.+|+.+|+.+....... . ...
T Consensus        45 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~  118 (228)
T cd03257          45 STLARAILGLLK----PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKK  118 (228)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHH
Confidence            367888888876    5899999999987532      2356799999998  456789999999765432211 1 111


Q ss_pred             HHHHH-HHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERART-VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~-~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+. +.++++.+++. ...++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~  181 (228)
T cd03257         119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLI--ADEPTSALDVSVQ  181 (228)
T ss_pred             HHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEE--ecCCCCCCCHHHH
Confidence            11122 35789999995 57789999999999999999999999999988  9999999998744

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.4e-24  Score=181.53  Aligned_cols=131  Identities=16%  Similarity=0.141  Sum_probs=104.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++|+|+|++.|.  |++|+|+++|.++....    .++.+||+||++.+++.+|+.+|+.+....+...........+
T Consensus        45 STLl~~l~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  122 (506)
T PRK13549         45 STLMKVLSGVYPHG--TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL  122 (506)
T ss_pred             HHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH
Confidence            37888888887641  37999999999885421    2456999999998889999999997754321100112233445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       123 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll--LDEPt~~LD~~~~  179 (506)
T PRK13549        123 RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLI--LDEPTASLTESET  179 (506)
T ss_pred             HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence            78899999999888899999999999999999999999999888  9999999998744

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.92  E-value=1.5e-24  Score=161.10  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=99.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .+++++|+|++.    |++|+|.++|.++...  ..++.++|++|+..+++..|+.+++.+.....   .  . . .+.+
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~--~-~-~~~~  108 (198)
T TIGR01189        40 TTLLRILAGLLR----PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G--G-A-QRTI  108 (198)
T ss_pred             HHHHHHHhCCCC----CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C--C-c-HHHH
Confidence            367888888876    4899999999987532  23456899999988888899999997654322   1  1 1 2357


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  163 (198)
T TIGR01189       109 EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI--LDEPTTALDKAGV  163 (198)
T ss_pred             HHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence            788999999988899999999999999999999999999998  9999999997643

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.2e-24  Score=165.79  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-------c--
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-------R--   75 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-------~--   75 (156)
                      .|++++|+|++.    |++|+|.++|.++....    .+..++|+||++.+++.+|+.+|+.+.......       .  
T Consensus        45 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~  120 (255)
T PRK11300         45 TTVFNCLTGFYK----PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT  120 (255)
T ss_pred             HHHHHHHhCCcC----CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccc
Confidence            367888888876    58999999999875321    234578999999999999999999875321000       0  


Q ss_pred             ---CCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         76 ---NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        76 ---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                         ..........+.++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       121 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  189 (255)
T PRK11300        121 PAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM--LDEPAAGLNPKET  189 (255)
T ss_pred             cccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCccCCCHHHH
Confidence               00111233467788999999888899999999999999999999999999988  9999999997744

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.92  E-value=2.6e-24  Score=165.21  Aligned_cols=126  Identities=22%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc----------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM   73 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~   73 (156)
                      |++++|+|+..    |++|+|.++|.++...                ..++.++|++|++.+++..|+.+|+.+..... 
T Consensus        41 TLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-  115 (252)
T TIGR03005        41 TILRILMTLEP----IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV-  115 (252)
T ss_pred             HHHHHHhCCCC----CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh-
Confidence            67888888876    4899999999987421                23567999999998888899999997643211 


Q ss_pred             ccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        74 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                       .........+.+.++++.+++.+..++.+.+|||||+||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       116 -~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  182 (252)
T TIGR03005       116 -LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVML--FDEVTSALDPELV  182 (252)
T ss_pred             -cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence             112233344568899999999888899999999999999999999999999888  9999999998754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.9e-24  Score=171.47  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=99.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------------------cccceeeEecCCC--CCCCCCCHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------------------LMVKVSGFVPQHD--LTVDTLTVHEHMTLM   68 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------------------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~   68 (156)
                      |++++|+|++.    |++|+|+++|.++...                   ..++.++|+||++  .+++ .|+.+|+.++
T Consensus        67 TLl~~L~Gl~~----p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~  141 (320)
T PRK13631         67 TLVTHFNGLIK----SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFG  141 (320)
T ss_pred             HHHHHHhCCCC----CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhh
Confidence            67778888776    5899999999886421                   2356799999987  3554 5999999776


Q ss_pred             HHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         69 ARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....   ........+++.++++.+++. ...++.+.+||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       142 ~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL--LDEPtsgLD~~~~  212 (320)
T PRK13631        142 PVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI--FDEPTAGLDPKGE  212 (320)
T ss_pred             HHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCccCCCHHHH
Confidence            4321   123444556788999999996 57899999999999999999999999999998  9999999998754

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=4.5e-24  Score=169.79  Aligned_cols=131  Identities=13%  Similarity=0.083  Sum_probs=101.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---c----ccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L----MVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~----~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      +++++|+|++.+.-.+++|+|.++|.++...   .    .++.++|+||++  .+.+.+++.+++......+  ......
T Consensus        48 TL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~  125 (326)
T PRK11022         48 VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKK  125 (326)
T ss_pred             HHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHH
Confidence            6778888877632224899999999997532   1    124689999997  4678889988876554332  122344


Q ss_pred             HHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         81 ERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ...+++.++++.++|.+   ..++++++|||||||||+||+||+.+|+++|  +||||+|+|+.++.
T Consensus       126 ~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli--lDEPts~LD~~~~~  190 (326)
T PRK11022        126 TRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI--ADEPTTALDVTIQA  190 (326)
T ss_pred             HHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCCHHHHH
Confidence            55677889999999964   4688999999999999999999999999888  99999999987554

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.6e-24  Score=170.36  Aligned_cols=127  Identities=20%  Similarity=0.197  Sum_probs=100.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      +++++|+|++.    |++|+|.++|.++...      ..++.++|+||++  .+.+.+++.+++......+.  ......
T Consensus        56 TLl~~l~gl~~----p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~  129 (327)
T PRK11308         56 TLARLLTMIET----PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAE  129 (327)
T ss_pred             HHHHHHHcCCC----CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHH
Confidence            56677777765    5899999999997542      2346799999997  46788899998876543321  223444


Q ss_pred             HHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++.+ ..++++++||||||||++||+||+.+|+++|  +||||+|||+.++.
T Consensus       130 ~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLi--lDEPts~LD~~~~~  191 (327)
T PRK11308        130 RREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVV--ADEPVSALDVSVQA  191 (327)
T ss_pred             HHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEE--EECCCccCCHHHHH
Confidence            5567899999999964 6799999999999999999999999999888  99999999977543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.2e-24  Score=168.53  Aligned_cols=127  Identities=24%  Similarity=0.235  Sum_probs=101.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-----ccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++..     ...+..+||+||++. .+...|+.+|+.+.....   .......
T Consensus        46 STLl~~i~Gl~~----p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~  118 (283)
T PRK13636         46 STLFQNLNGILK----PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEV  118 (283)
T ss_pred             HHHHHHHhcCCC----CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHH
Confidence            367888888877    489999999998741     123567999999973 334579999997754321   2233344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       119 ~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi--lDEPt~gLD~~~~~  178 (283)
T PRK13636        119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV--LDEPTAGLDPMGVS  178 (283)
T ss_pred             HHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHHH
Confidence            5678899999999988999999999999999999999999999888  99999999987553

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.92  E-value=1.7e-24  Score=161.34  Aligned_cols=120  Identities=20%  Similarity=0.227  Sum_probs=99.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.++|.++..  ...++.++|++|++.+++..|+.+|+.+....      .   ..+++
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~  106 (201)
T cd03231          40 TTLLRILAGLSP----PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQV  106 (201)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHH
Confidence            367888888876    489999999988643  23456789999998888889999998764211      0   23467


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       107 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~~LD~~~~  161 (201)
T cd03231         107 EEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI--LDEPTTALDKAGV  161 (201)
T ss_pred             HHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence            889999999888899999999999999999999999999888  9999999998743

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.91  E-value=1.7e-24  Score=180.71  Aligned_cols=129  Identities=21%  Similarity=0.180  Sum_probs=103.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~   83 (156)
                      .|++|+|+|++.    |++|+|+++|.++...    ..++.++|++|++.+++.+|+.+++.++...+.. .........
T Consensus        44 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  119 (501)
T PRK10762         44 STMMKVLTGIYT----RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY  119 (501)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH
Confidence            378888888877    4899999999987532    1245689999999888999999999775322110 011233344


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       120 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~  177 (501)
T PRK10762        120 AEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII--MDEPTDALTDTET  177 (501)
T ss_pred             HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcCCCCHHHH
Confidence            578899999999988899999999999999999999999999988  9999999998744

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.3e-24  Score=168.15  Aligned_cols=127  Identities=19%  Similarity=0.248  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc----ccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----NLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.    |++|+|+++|.++..    ...++.+||+||++. .+...++.+++.+.....   ........
T Consensus        50 STLl~~l~Gl~~----~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~  122 (280)
T PRK13633         50 STIAKHMNALLI----PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIR  122 (280)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHH
Confidence            367888888877    489999999998753    123567999999974 233468999998764322   12333445


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       123 ~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~gLD~~~~~  181 (280)
T PRK13633        123 ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII--FDEPTAMLDPSGRR  181 (280)
T ss_pred             HHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence            678899999999988999999999999999999999999999988  99999999987543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.91  E-value=1.7e-24  Score=167.04  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.++.  ..++.++|++|++.+++..|+.+|+.+...     .    ....++.+
T Consensus        52 STLlk~l~Gl~~----p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~  116 (257)
T PRK11247         52 STLLRLLAGLET----PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQ  116 (257)
T ss_pred             HHHHHHHhcCCC----CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHH
Confidence            367888888876    48999999998764  235669999999988888999999876421     0    12346778


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll--LDEPt~~LD~~~~  169 (257)
T PRK11247        117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL--LDEPLGALDALTR  169 (257)
T ss_pred             HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence            9999999988899999999999999999999999999998  9999999998754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.91  E-value=3.9e-24  Score=165.53  Aligned_cols=126  Identities=18%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      .|++++|+|++.    |++|+|+++|.++...      ..++.++|+||++  .+++..|+.+++.+.....  ......
T Consensus        51 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~  124 (265)
T TIGR02769        51 STLARLLLGLEK----PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDES  124 (265)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHH
Confidence            368888888877    4899999999987532      1345699999996  3567789999987653221  112233


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ...+++.++++.+++. ...++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       125 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~ill--LDEPt~~LD~~~  185 (265)
T TIGR02769       125 EQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV--LDEAVSNLDMVL  185 (265)
T ss_pred             HHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence            3446788999999996 56789999999999999999999999999888  999999999874

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.91  E-value=1.5e-24  Score=184.99  Aligned_cols=133  Identities=35%  Similarity=0.528  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|...+.. ..+|+|.++|.++.....++.+||++|++.+++.+||+||+.|....+.+......+..+++++
T Consensus        65 STLL~~L~g~~~~~~-~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~  143 (617)
T TIGR00955        65 TTLMNALAFRSPKGV-KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE  143 (617)
T ss_pred             HHHHHHHhCCCCCCC-cceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence            478999999876520 1479999999998655556779999999999999999999999876654333344455668999


Q ss_pred             HHHHcCCCccccCccC------cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLN------VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~------~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..|+.++      +||||||||++||++|+.+|++++  +||||+|+|+.++.
T Consensus       144 ~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll--lDEPtsgLD~~~~~  203 (617)
T TIGR00955       144 VLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF--CDEPTSGLDSFMAY  203 (617)
T ss_pred             HHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE--eeCCCcchhHHHHH
Confidence            9999999988888876      599999999999999999999887  99999999987544

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.1e-24  Score=168.56  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=102.6

Q ss_pred             HHHHHHHhhhhhcCCCCcc---eEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVD---GQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~---G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|+..|    ++   |+|+++|.++...   ..++.+||+||++. .++..|+.+|+.+.....   ......
T Consensus        47 STLl~~l~G~~~p----~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~  119 (282)
T PRK13640         47 STISKLINGLLLP----DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPE  119 (282)
T ss_pred             HHHHHHHhcccCC----CCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHH
Confidence            3678888888875    56   9999999988532   23467899999974 567789999997653322   223334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++.+..++++.+||+||+||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       120 ~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~lll--lDEPt~gLD~~~~~  180 (282)
T PRK13640        120 MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII--LDESTSMLDPAGKE  180 (282)
T ss_pred             HHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence            45678899999999988999999999999999999999999999988  99999999987543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.6e-24  Score=167.58  Aligned_cols=127  Identities=19%  Similarity=0.223  Sum_probs=102.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .+++++|+|++.    |++|+|+++|.++...   ..++.++|++|++. .++..|+.+|+.+.....   ........+
T Consensus        47 STLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~  119 (277)
T PRK13642         47 STTARLIDGLFE----EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIK  119 (277)
T ss_pred             HHHHHHHhcCCC----CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHH
Confidence            367788888876    5899999999987532   23567999999974 567789999997654321   122333445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       120 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll--lDEPt~~LD~~~~~  177 (277)
T PRK13642        120 RVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII--LDESTSMLDPTGRQ  177 (277)
T ss_pred             HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence            78899999999888899999999999999999999999999888  99999999987543

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3.8e-24  Score=166.68  Aligned_cols=126  Identities=25%  Similarity=0.289  Sum_probs=100.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|+..    |++|+|+++|.++...   ..++.++|++|++. .+...|+.+|+.+.....   ........+
T Consensus        44 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~  116 (277)
T PRK13652         44 STLFRHFNGILK----PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAH  116 (277)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHH
Confidence            367888888776    5899999999987532   33566899999973 344679999997654321   223344456


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       117 ~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli--lDEPt~gLD~~~~  173 (277)
T PRK13652        117 RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV--LDEPTAGLDPQGV  173 (277)
T ss_pred             HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            78899999999988899999999999999999999999999888  9999999997643

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.91  E-value=4.1e-24  Score=162.21  Aligned_cols=129  Identities=16%  Similarity=0.097  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccc-cceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLM-VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~-~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.|...+++|+|+++|.++..... ++.++|++|++.  +++..|+.+++.+.....   ........++
T Consensus        26 STLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~  102 (230)
T TIGR02770        26 SLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL---GKLSKQARAL  102 (230)
T ss_pred             HHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc---CccHHHHHHH
Confidence            3788888888774111279999999998754322 356899999974  456789999886643321   1112334567


Q ss_pred             HHHHHHHcCCC---ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         86 VDALLKELGLL---KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        86 ~~~~l~~~~L~---~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +.++++.+++.   +..++++.+||+|||||++||+|++.+|+++|  |||||+|+|+.+
T Consensus       103 ~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vll--LDEPt~~LD~~~  160 (230)
T TIGR02770       103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLI--ADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHH
Confidence            88999999997   56789999999999999999999999999888  999999999764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.8e-24  Score=163.05  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=102.7

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.+. ..|++|+|.++|.++...   .+++.++|+||++.+++..|+.+|+.+....... ........+
T Consensus        43 STLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~  121 (250)
T PRK14247         43 STLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQE  121 (250)
T ss_pred             HHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHH
Confidence            37889999987641 014799999999987532   3456799999998888889999999876432210 012233445


Q ss_pred             HHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++++.+++.+    ..++.+.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       122 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--LDEP~~~LD~~~~  182 (250)
T PRK14247        122 RVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL--ADEPTANLDPENT  182 (250)
T ss_pred             HHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence            7889999999853    4688999999999999999999999999998  9999999998744

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=2.5e-24  Score=160.22  Aligned_cols=122  Identities=19%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|+..    |++|+|+++|.++...  ..++.++|++|+..+++..|+.+++.+.....      .  ....+
T Consensus        41 STLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~  108 (200)
T PRK13540         41 TTLLKLIAGLLN----PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGI  108 (200)
T ss_pred             HHHHHHHhcCCC----CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHH
Confidence            367788888776    5899999999987532  33567999999988888899999987653211      1  12367


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+..++++.+||+||+||++||+|++.+|+++|  +||||+|+|+.+..
T Consensus       109 ~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li--lDEP~~~LD~~~~~  164 (200)
T PRK13540        109 TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL--LDEPLVALDELSLL  164 (200)
T ss_pred             HHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCCcccCHHHHH
Confidence            889999999877788999999999999999999999999888  99999999977443

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.91  E-value=3.6e-24  Score=165.21  Aligned_cols=126  Identities=21%  Similarity=0.215  Sum_probs=100.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|+++|.++...   ..++.++|++|++.+++..|+.+++.+.....   ........+.
T Consensus        42 STLl~~i~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~  114 (258)
T PRK13548         42 STLLRALSGELS----PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDAL  114 (258)
T ss_pred             HHHHHHHhCCCC----CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHH
Confidence            367888888876    4899999999987532   23456899999988878889999987653221   1112233456


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh------cCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS------QDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~------~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..++.+.+||||||||++||+||+      .+|+++|  |||||+|+|+.++
T Consensus       115 ~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll--LDEPt~~LD~~~~  176 (258)
T PRK13548        115 VAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL--LDEPTSALDLAHQ  176 (258)
T ss_pred             HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE--EeCCcccCCHHHH
Confidence            788999999988889999999999999999999999      5999888  9999999998754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4e-24  Score=166.62  Aligned_cols=125  Identities=20%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .|++++|+|++.    |++|+|.++|.++..       ...++.++|++|++  .+++ .|+.+|+.+.....   ....
T Consensus        47 STLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~  118 (280)
T PRK13649         47 STIMQLLNGLHV----PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQ  118 (280)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCH
Confidence            367888888876    489999999998743       12346689999996  3444 69999998654322   1223


Q ss_pred             HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....+.+.++++.+++. ...++++.+||||||||+.||+||+.+|+++|  |||||+|+|+.++
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~  181 (280)
T PRK13649        119 EEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILV--LDEPTAGLDPKGR  181 (280)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            33445678899999997 46789999999999999999999999999988  9999999998743

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=3.6e-24  Score=160.94  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=99.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      +++++|+|++.    |++|+|.++|.++.....++.++|++|.+.+++..|+.+|+.+....+   ..   ...+.+.++
T Consensus        52 TLl~~i~G~~~----~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~  121 (214)
T PRK13543         52 TLLRVLAGLLH----VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSA  121 (214)
T ss_pred             HHHHHHhCCCC----CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHH
Confidence            67788888776    489999999998764333456899999988888889999987654322   11   123456788


Q ss_pred             HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       122 l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  173 (214)
T PRK13543        122 LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL--LDEPYANLDLEGI  173 (214)
T ss_pred             HHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            999999888899999999999999999999999999888  9999999997743

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3.7e-24  Score=166.17  Aligned_cols=126  Identities=18%  Similarity=0.192  Sum_probs=98.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCC-CCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|.++|.++...     ..++.++|+||++.. +...++.+|+.+.....   .......
T Consensus        41 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~  113 (271)
T PRK13638         41 STLFMNLSGLLR----PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEI  113 (271)
T ss_pred             HHHHHHHcCCCC----CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHH
Confidence            367888888877    5899999999987411     234669999999753 34557888887653322   1223334


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll--LDEPt~~LD~~~~  172 (271)
T PRK13638        114 TRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL--LDEPTAGLDPAGR  172 (271)
T ss_pred             HHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            4567889999999888899999999999999999999999999998  9999999998754

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.6e-24  Score=166.50  Aligned_cols=129  Identities=21%  Similarity=0.281  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|++|+..+++.+|+.+|+.+........ ........+
T Consensus        51 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  126 (265)
T PRK10575         51 STLLKMLGRHQP----PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE  126 (265)
T ss_pred             HHHHHHHcCCCC----CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHH
Confidence            367888888876    5899999999987432   23456899999988888899999997642111000 011123345


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       127 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--LDEPt~~LD~~~~  183 (265)
T PRK10575        127 KVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL--LDEPTSALDIAHQ  183 (265)
T ss_pred             HHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            67899999999888899999999999999999999999999998  9999999998754

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=3.1e-24  Score=160.57  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+..    |++|+|+++|.++.....++.++|++|+..+++..|+.+|+.+....+   ..    ..+.+.+
T Consensus        42 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~  110 (207)
T PRK13539         42 TTLLRLIAGLLP----PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAA  110 (207)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHH
Confidence            367888888776    489999999988642224567899999888888899999987654332   11    1234788


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++++||+|||||++||+|++.+|+++|  +||||+|+|+.+..
T Consensus       111 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~  164 (207)
T PRK13539        111 ALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWI--LDEPTAALDAAAVA  164 (207)
T ss_pred             HHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            9999999887889999999999999999999999999888  99999999977443

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.8e-24  Score=165.34  Aligned_cols=126  Identities=21%  Similarity=0.173  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...   ..++.++|++|++. .++..++.+|+.+.....   ........+
T Consensus        49 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~  121 (269)
T PRK13648         49 STIAKLMIGIEK----VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHR  121 (269)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHH
Confidence            367888888876    4899999999987532   34567999999974 677789999987654321   122333445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       122 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEPt~~LD~~~~  178 (269)
T PRK13648        122 RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII--LDEATSMLDPDAR  178 (269)
T ss_pred             HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            67889999999988899999999999999999999999999998  9999999997743

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3e-24  Score=165.20  Aligned_cols=129  Identities=19%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHH-hhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|+||+..+++.+|+.+++.++.. .............+
T Consensus        42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~  117 (255)
T PRK11231         42 STLLKCFARLLT----PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA  117 (255)
T ss_pred             HHHHHHHhCCcC----CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHH
Confidence            368888888876    4899999999987432   234568999999888888899999876421 10000111123345


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+|||||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       118 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  174 (255)
T PRK11231        118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL--LDEPTTYLDINHQ  174 (255)
T ss_pred             HHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            67889999999888899999999999999999999999999988  9999999998744

>KOG0061|consensus

Probab=99.91  E-value=3.7e-24  Score=182.15  Aligned_cols=133  Identities=35%  Similarity=0.530  Sum_probs=118.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|...+. ...+|+|.+||+......+++..|||.|+..+++.+||+|++.|.+.++.+......+..+++++
T Consensus        70 tTLL~~Lagr~~~~-~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~  148 (613)
T KOG0061|consen   70 TTLLNALAGRLNGG-LKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEE  148 (613)
T ss_pred             HHHHHHHhccccCC-CcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence            47899999999852 14799999999877766778889999999999999999999999998887765666777889999


Q ss_pred             HHHHcCCCccccCccC-----cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLN-----VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~-----~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.++.|+.++     .+||||||||+||.-++++|.+++  +||||.|+|+.++.
T Consensus       149 vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLf--lDEPTSGLDS~sA~  207 (613)
T KOG0061|consen  149 VISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILF--LDEPTSGLDSFSAL  207 (613)
T ss_pred             HHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEE--ecCCCCCcchhhHH
Confidence            9999999999999986     599999999999999999999887  99999999998774

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.8e-24  Score=162.89  Aligned_cols=132  Identities=19%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|. ..|++|+|.++|.++..     ...++.++|++|++.+++..|+.+|+.+....+.  .......
T Consensus        44 STLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~  121 (258)
T PRK14241         44 STVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDL  121 (258)
T ss_pred             HHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHH
Confidence            37888999987641 01379999999998742     1335679999999988888999999977543321  1122334


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+.++++.+++.    +..++.+.+||||||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       122 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  185 (258)
T PRK14241        122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL--MDEPCSALDPISTL  185 (258)
T ss_pred             HHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence            45678889999884    45688899999999999999999999999998  99999999987543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.2e-24  Score=178.41  Aligned_cols=129  Identities=18%  Similarity=0.149  Sum_probs=103.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...    .+++.++|++|++.+++.+|+.+|+.+................+
T Consensus        44 STLl~~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~  119 (501)
T PRK11288         44 STLLKILSGNYQ----PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY  119 (501)
T ss_pred             HHHHHHHhCCCC----CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH
Confidence            378888888876    4899999999987532    23567999999998889999999998743211000012334456


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.+.
T Consensus       120 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  176 (501)
T PRK11288        120 EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA--FDEPTSSLSAREI  176 (501)
T ss_pred             HHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE--EcCCCCCCCHHHH
Confidence            78899999999877899999999999999999999999999888  9999999998744

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.91  E-value=8.1e-24  Score=161.30  Aligned_cols=126  Identities=23%  Similarity=0.245  Sum_probs=102.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .+++++|+|++.    |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+....+   ........+.+.
T Consensus        40 STLl~~i~G~~~----~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~  112 (237)
T TIGR00968        40 STLLRIIAGLEQ----PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVE  112 (237)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHH
Confidence            367888888876    5899999999987542 23456899999998888899999997654332   112223345678


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++.+.+||+||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll--lDEP~~~LD~~~~  166 (237)
T TIGR00968       113 ELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL--LDEPFGALDAKVR  166 (237)
T ss_pred             HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            99999999888899999999999999999999999999988  9999999997654

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=7.4e-24  Score=162.89  Aligned_cols=130  Identities=16%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|. -.|++|+|+++|.++..     ...++.++|++|++..++ .|+.+|+.+......  .......
T Consensus        47 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~  123 (254)
T PRK14273         47 STFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKL  123 (254)
T ss_pred             HHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHH
Confidence            37888899988751 01258999999998742     123567999999988775 899999987643221  1122234


Q ss_pred             HHHHHHHHHHcCC----CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGL----LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L----~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++    .+..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.+.
T Consensus       124 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--LDEPt~~LD~~~~  186 (254)
T PRK14273        124 DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL--MDEPTSALDPIST  186 (254)
T ss_pred             HHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcccCHHHH
Confidence            4567888999887    345688999999999999999999999999888  9999999998744

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=9e-24  Score=168.32  Aligned_cols=134  Identities=11%  Similarity=0.064  Sum_probs=101.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccC---
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRN---   76 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~---   76 (156)
                      .|++++|+|+..+...+++|+|+|+|+++....       .++.++|+||++.  +.+..|+.+++......+....   
T Consensus        47 STLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~  126 (330)
T PRK15093         47 SLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWW  126 (330)
T ss_pred             HHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhcccccc
Confidence            378888999886433358999999999875321       1246999999975  4677899999875422111000   


Q ss_pred             CcHHHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         77 LHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        77 ~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .......+++.++++.++|.+   ..++++.+|||||||||+||+||+.+|+++|  +||||+|||+.++.
T Consensus       127 ~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli--lDEPts~LD~~~~~  195 (330)
T PRK15093        127 QRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI--ADEPTNAMEPTTQA  195 (330)
T ss_pred             ccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE--EeCCCCcCCHHHHH
Confidence            011234467889999999974   3588999999999999999999999999888  99999999987553

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.91  E-value=3.8e-24  Score=162.14  Aligned_cols=124  Identities=19%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...    ..++.++|+||++.+++..|+.+++.+....+   ...   ..+
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~  109 (230)
T TIGR03410        40 TTLLKTLMGLLP----VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRK  109 (230)
T ss_pred             HHHHHHHhCCCC----CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHH
Confidence            367888888877    4899999999987532    12456899999998888899999997764332   111   123


Q ss_pred             HHHHHHHHcC-CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~-L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ...++++.++ +.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+..
T Consensus       110 ~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ill--lDEPt~~LD~~~~~  168 (230)
T TIGR03410       110 IPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLL--LDEPTEGIQPSIIK  168 (230)
T ss_pred             HHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHHH
Confidence            4567777776 5667789999999999999999999999999998  99999999987543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.4e-24  Score=163.06  Aligned_cols=129  Identities=18%  Similarity=0.225  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+.. .|++|+|.++|.++...     ..++.++|+||++.+++ .|+.+|+.+....+   .......
T Consensus        52 STLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~  127 (258)
T PRK14268         52 STFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDL  127 (258)
T ss_pred             HHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHH
Confidence            378899999876421 13799999999987421     23566999999988887 89999998764332   1223333


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++++.+|||||+||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       128 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  190 (258)
T PRK14268        128 DGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL--FDEPTSALDPIST  190 (258)
T ss_pred             HHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcccCHHHH
Confidence            45678899999883    45688899999999999999999999999888  9999999998754

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.91  E-value=5.4e-24  Score=160.71  Aligned_cols=120  Identities=17%  Similarity=0.258  Sum_probs=99.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.++.... .+.++|+||++.+++..|+.+|+.+.....   ...    ..++.+
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~  107 (223)
T TIGR03740        40 STLLKMITGILR----PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDE  107 (223)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHH
Confidence            378888888876    58999999999875332 346899999998888899999997654332   111    245778


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++.+++.+..++.+.+||+||+||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       108 ~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll--lDEP~~~LD~~~  159 (223)
T TIGR03740       108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI--LDEPTNGLDPIG  159 (223)
T ss_pred             HHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCccCCCHHH
Confidence            8999999988899999999999999999999999999988  999999999774

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=6.6e-24  Score=165.15  Aligned_cols=127  Identities=24%  Similarity=0.265  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.    |++|+|+++|.++...     .+++.++|+||++. .+...|+.+++.+.....   .......
T Consensus        42 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~  114 (275)
T PRK13639         42 STLFLHFNGILK----PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEV  114 (275)
T ss_pred             HHHHHHHhCCCC----CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHH
Confidence            367888888776    5899999999987421     23567999999963 334569999997653221   1223344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++++.+|||||+||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       115 ~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~gLD~~~~~  174 (275)
T PRK13639        115 EKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV--LDEPTSGLDPMGAS  174 (275)
T ss_pred             HHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHHH
Confidence            5678899999999988899999999999999999999999999988  99999999987543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.91  E-value=5.5e-24  Score=164.35  Aligned_cols=132  Identities=21%  Similarity=0.239  Sum_probs=101.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-----c
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----R   75 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~   75 (156)
                      .|++++|+|++.|. .+++|+|+++|.++...        ..++.++|+||++.+++.+|+.+|+.+.......     .
T Consensus        44 STLl~~i~G~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  122 (262)
T PRK09984         44 STLLRHLSGLITGD-KSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCF  122 (262)
T ss_pred             HHHHHHHhccCCCC-CCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhc
Confidence            37888888888751 01369999999987431        2245689999999888889999999764321000     0


Q ss_pred             CCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         76 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        76 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .........++.++++.+++.+..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       123 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  188 (262)
T PRK09984        123 SWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL--ADEPIASLDPESA  188 (262)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE--ecCccccCCHHHH
Confidence            01112334578899999999888899999999999999999999999999888  9999999997744

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=161.21  Aligned_cols=130  Identities=19%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..... .|++|+|.++|.++..     ...++.++|++|++.+++ .|+.+|+.+....+.  .......
T Consensus        46 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~  122 (253)
T PRK14242         46 STFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYL  122 (253)
T ss_pred             HHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHH
Confidence            378899999864110 1479999999998742     123567999999988887 599999987643321  1122234


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+    ..++.+.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       123 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--lDEPt~~LD~~~~  185 (253)
T PRK14242        123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLL--MDEPASALDPIAT  185 (253)
T ss_pred             HHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            567788899999843    4578899999999999999999999999888  9999999998754

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.91  E-value=7.2e-24  Score=163.21  Aligned_cols=129  Identities=22%  Similarity=0.176  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhh-cccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...   ..++.++|++|++..++..|+.+|+.+..... ...........+
T Consensus        41 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  116 (256)
T TIGR03873        41 STLLRLLAGALR----PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAA  116 (256)
T ss_pred             HHHHHHHcCCCC----CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHH
Confidence            378888888877    4899999999987532   23456899999987777889999997642111 000111122345


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||+||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~  173 (256)
T TIGR03873       117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL--LDEPTNHLDVRAQ  173 (256)
T ss_pred             HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHHHH
Confidence            68899999999888899999999999999999999999999998  9999999998744

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.3e-24  Score=178.13  Aligned_cols=129  Identities=17%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhh-cccC---CcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRN---LHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~-~~~~---~~~~   80 (156)
                      .|++|+|+|++.    |++|+|+++|.++....    .++.++|+||++.+++.+|+.+|+.+..... ....   ....
T Consensus        45 STLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  120 (510)
T PRK09700         45 STLMKVLSGIHE----PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWR  120 (510)
T ss_pred             HHHHHHHcCCcC----CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHH
Confidence            378888888887    48999999999875421    2346999999998889999999987643110 0001   1123


Q ss_pred             HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       121 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll--LDEPt~~LD~~~~  181 (510)
T PRK09700        121 EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVII--MDEPTSSLTNKEV  181 (510)
T ss_pred             HHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence            344678899999999988899999999999999999999999999888  9999999998754

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=161.61  Aligned_cols=132  Identities=19%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|. ..|++|+|+++|.++..     ...++.++|++|++.+++..|+.+|+.+....+.. .......
T Consensus        44 STLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~  122 (253)
T PRK14267         44 STLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKEL  122 (253)
T ss_pred             HHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHH
Confidence            37888899987741 01259999999998751     12356799999999888899999999875432210 0122333


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       123 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  185 (253)
T PRK14267        123 DERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL--MDEPTANIDPVGT  185 (253)
T ss_pred             HHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence            45678889999874    34688899999999999999999999999988  9999999998754

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.6e-24  Score=165.15  Aligned_cols=129  Identities=17%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..+..++|+||++.+++..|+.+++.+....... .........+
T Consensus        47 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~  122 (265)
T PRK10253         47 STLLRTLSRLMT----PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEE  122 (265)
T ss_pred             HHHHHHHcCCCC----CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHH
Confidence            367888888876    4899999999987532   2345689999999888889999998754211000 0001122345


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       123 ~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~gLD~~~~  179 (265)
T PRK10253        123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML--LDEPTTWLDISHQ  179 (265)
T ss_pred             HHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence            67889999999888899999999999999999999999999998  9999999997744

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.4e-24  Score=176.89  Aligned_cols=129  Identities=17%  Similarity=0.084  Sum_probs=101.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...    ..++.++|+||++.+++.+|+.+|+.+................+
T Consensus        38 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~  113 (491)
T PRK10982         38 STLLKCLFGIYQ----KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR  113 (491)
T ss_pred             HHHHHHHcCCCC----CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHH
Confidence            367888888876    4899999999987532    22456999999998888999999987643111000012233445


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++....++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.+.
T Consensus       114 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll--LDEPt~~LD~~~~  170 (491)
T PRK10982        114 DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI--MDEPTSSLTEKEV  170 (491)
T ss_pred             HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCCHHHH
Confidence            78899999999888899999999999999999999999999888  9999999998744

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.91  E-value=1.2e-23  Score=163.11  Aligned_cols=128  Identities=14%  Similarity=0.170  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.  +++..|+.+++.+......  ........
T Consensus        53 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~  126 (267)
T PRK15112         53 STLAKMLAGMIE----PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQRE  126 (267)
T ss_pred             HHHHHHHhCCCC----CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHH
Confidence            367888888877    4899999999987532   22356899999974  5677899998876543221  12233344


Q ss_pred             HHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         84 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        84 ~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.+.++++.+++. ...++++.+||+|||||++||+|++.+|+++|  |||||+|+|+.+..
T Consensus       127 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~~  186 (267)
T PRK15112        127 KQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVII--ADEALASLDMSMRS  186 (267)
T ss_pred             HHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEE--EcCCcccCCHHHHH
Confidence            5688999999995 56788899999999999999999999999998  99999999987543

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.91  E-value=9.8e-24  Score=159.70  Aligned_cols=124  Identities=13%  Similarity=0.154  Sum_probs=98.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..    |++|+|.++|.++...   ..++.++|++|++.+++ .|+.+|+.+....+.   ..  ...++
T Consensus        47 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~--~~~~~  116 (225)
T PRK10247         47 STLLKIVASLIS----PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQ--PDPAI  116 (225)
T ss_pred             HHHHHHHhcccC----CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---CC--hHHHH
Confidence            367888888776    5899999999987532   23467899999988776 499999976533221   11  12345


Q ss_pred             HHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++. ...++++.+||+||+||++||+||+.+|+++|  +||||+|+|+.+..
T Consensus       117 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  174 (225)
T PRK10247        117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL--LDEITSALDESNKH  174 (225)
T ss_pred             HHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            77899999996 46789999999999999999999999999998  99999999987544

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.91  E-value=7.4e-24  Score=196.45  Aligned_cols=126  Identities=29%  Similarity=0.447  Sum_probs=106.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++|+|+|++.    |++|+|+++|.++...  ..++.+||+||++.+++.+|+.|++.+..+.+   +.......+++
T Consensus       970 STLLkiLaGLl~----PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v 1042 (2272)
T TIGR01257       970 TTTLSILTGLLP----PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEM 1042 (2272)
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHH
Confidence            367888888877    5899999999998532  34567999999999999999999998876543   22333445678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++++.++|.+..++++++||||||||++||+||+.+|+++|  |||||+|+||.++
T Consensus      1043 ~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL--LDEPTSGLDp~sr 1097 (2272)
T TIGR01257      1043 EAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV--LDEPTSGVDPYSR 1097 (2272)
T ss_pred             HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCCcCCCHHHH
Confidence            899999999998999999999999999999999999999998  9999999998744

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=160.61  Aligned_cols=131  Identities=19%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.+. +|++|+|+++|+++...   ..++.++|+||++.+++ .|+.+|+.+....+. .........++
T Consensus        42 STLl~~l~Gl~~~~-~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~  118 (246)
T PRK14269         42 STFLRCFNRMNDKI-AKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEAL  118 (246)
T ss_pred             HHHHHHHhcccCCC-CCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHH
Confidence            37889999987521 25899999999987532   23566899999988886 699999987543321 00012234456


Q ss_pred             HHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++.    +..++.+.+||+|||||++||||++.+|+++|  +||||+|+|+.+..
T Consensus       119 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEP~~~LD~~~~~  179 (246)
T PRK14269        119 VVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLL--LDEPTSALDPISSG  179 (246)
T ss_pred             HHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence            78899999995    34578889999999999999999999999998  99999999987543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=6.3e-24  Score=161.70  Aligned_cols=124  Identities=16%  Similarity=0.229  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .+++++|+|++.    |++|+|.++|.++...    ..++.++|++|++.+++..|+.+|+.+.....     ......+
T Consensus        45 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~  115 (237)
T PRK11614         45 TTLLGTLCGDPR----ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQE  115 (237)
T ss_pred             HHHHHHHcCCCC----CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHH
Confidence            367888888876    5899999999987542    13456999999998888899999997653211     1112234


Q ss_pred             HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++++.+ ++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       116 ~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill--lDEPt~~LD~~~~  173 (237)
T PRK11614        116 RIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL--LDEPSLGLAPIII  173 (237)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE--EcCccccCCHHHH
Confidence            566777777 47766788999999999999999999999999998  9999999998743

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.9e-23  Score=159.43  Aligned_cols=131  Identities=19%  Similarity=0.245  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+. ..|++|+|+++|.++...     ..++.++|+||++.+++..|+.+|+.+....+.  .......
T Consensus        44 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~  121 (252)
T PRK14256         44 STVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEA  121 (252)
T ss_pred             HHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHH
Confidence            47889999987521 013689999999987531     235669999999988888999999976543221  1122233


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++..    ..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       122 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEP~~gLD~~~~  184 (252)
T PRK14256        122 DEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVIL--MDEPASALDPIST  184 (252)
T ss_pred             HHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            456788899999853    4577899999999999999999999999888  9999999998744

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=9.3e-24  Score=165.32  Aligned_cols=127  Identities=23%  Similarity=0.219  Sum_probs=98.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--------ccccceeeEecCCCCC-CCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--------NLMVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--------~~~~~~ig~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .|++++|+|++.    |++|+|+++|.++..        ...++.++|++|++.. +...|+.+|+.+.....   ....
T Consensus        51 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~  123 (289)
T PRK13645         51 STMIQLTNGLII----SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENK  123 (289)
T ss_pred             HHHHHHHhcCCC----CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCH
Confidence            367888888876    489999999998631        1235678999999632 23459999998754321   1223


Q ss_pred             HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ....+++.++++.+++. +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++.
T Consensus       124 ~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl--LDEPt~~LD~~~~~  187 (289)
T PRK13645        124 QEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLV--LDEPTGGLDPKGEE  187 (289)
T ss_pred             HHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence            33445678899999994 67889999999999999999999999999888  99999999987543

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.91  E-value=2.1e-23  Score=159.09  Aligned_cols=131  Identities=16%  Similarity=0.083  Sum_probs=99.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc----CCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR----NLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~   80 (156)
                      .|++++|+|+..  ++|++|+|.++|.++...   . .+..++|++|++.+++..|+.+++.+........    .....
T Consensus        40 STLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~  117 (243)
T TIGR01978        40 STLSKTIAGHPS--YEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLL  117 (243)
T ss_pred             HHHHHHHhCCCC--CCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHH
Confidence            378888888852  126899999999987532   1 2334899999999999999999987654321100    01122


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+++.++++.+++. ...++.+. +||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~  180 (243)
T TIGR01978       118 DFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI--LDEIDSGLDIDAL  180 (243)
T ss_pred             HHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence            2345678999999997 45678887 599999999999999999999888  9999999998744

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.91  E-value=1.5e-23  Score=158.27  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEEC--CE--ecCcc---c----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLN--GL--EVEKN---L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~--G~--~i~~~---~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~   77 (156)
                      .|++++|+|++.    |++|+|+++  |.  ++...   .    .++.++|++|++.+++.+|+.+++.+.....   ..
T Consensus        48 STLl~~i~G~~~----~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~  120 (224)
T TIGR02324        48 STLLKSLYANYL----PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GV  120 (224)
T ss_pred             HHHHHHHhCCCC----CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CC
Confidence            367888888877    489999998  43  44321   1    1346899999998899999999987653321   12


Q ss_pred             cHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         78 HHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ......+++.++++.+++.+. .++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       121 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~~LD~~~~~  186 (224)
T TIGR02324       121 PREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILL--LDEPTASLDAANRQ  186 (224)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence            223344577889999999764 578999999999999999999999999888  99999999987443

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.90  E-value=2.6e-23  Score=165.70  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---c---c-cceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L---M-VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~---~-~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      +++++|+|++.+.. .++|+|+|+|.++...   .   . ++.++|+||++  .+.+.+++.+++......+.  .....
T Consensus        57 TL~~~l~Gl~~p~~-~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~  133 (330)
T PRK09473         57 QTAFALMGLLAANG-RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKA  133 (330)
T ss_pred             HHHHHHHcCCCCCC-CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHH
Confidence            56777777766410 1499999999998542   1   1 24699999997  56788999998876543321  22344


Q ss_pred             HHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         81 ERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ...+++.++++.+++.+   ..++++++|||||+||++||+||+.+|+++|  +||||+|+|+.++..
T Consensus       134 ~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~lli--lDEPts~LD~~~~~~  199 (330)
T PRK09473        134 EAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI--ADEPTTALDVTVQAQ  199 (330)
T ss_pred             HHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHHHH
Confidence            45567889999999964   3477999999999999999999999999888  999999999876543

>PLN03211 ABC transporter G-25; Provisional

Probab=99.90  E-value=1.2e-23  Score=180.38  Aligned_cols=130  Identities=32%  Similarity=0.494  Sum_probs=103.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|...+.  ..+|+|.++|.++... .++.+||++|++.+++.+|++|++.+....+.+.........+++++
T Consensus       108 STLL~iLaG~~~~~--~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~  184 (659)
T PLN03211        108 STLLNALAGRIQGN--NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES  184 (659)
T ss_pred             HHHHHHHhCCCCCC--ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            37889999987752  1489999999987543 34568999999999999999999988765442222233344567889


Q ss_pred             HHHHcCCCcccc-----CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKN-----SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~-----~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++|.+..|     +.+++||||||||++||++|+.+|++++  |||||+|+|+.++
T Consensus       185 ~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl--LDEPtsgLD~~~~  242 (659)
T PLN03211        185 VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI--LDEPTSGLDATAA  242 (659)
T ss_pred             HHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE--EeCCCCCcCHHHH
Confidence            999999987654     4567899999999999999999999887  9999999997744

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=9.6e-24  Score=156.50  Aligned_cols=121  Identities=16%  Similarity=0.108  Sum_probs=98.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .+++++|+|+..    |++|+|+++|.++.... .+.++|++|+..+++..|+.+|+.+.....   .     ..+.+.+
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~  106 (195)
T PRK13541         40 SSLLRMIAGIMQ----PSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYA  106 (195)
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHH
Confidence            367888888877    48999999999875432 345899999887778899999997654221   1     1235678


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       107 ~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ll--lDEP~~~LD~~~~~  160 (195)
T PRK13541        107 AIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWL--LDEVETNLSKENRD  160 (195)
T ss_pred             HHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            8899999888899999999999999999999999999988  99999999987543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=9.5e-25  Score=156.61  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=106.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||++++...+..+++|++|+++|.|++++.   ...|++++|+.|.+.+|+. ||.+|+.|..+.++.+     .+..++
T Consensus        40 ~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr-----~dr~aa  113 (223)
T COG4619          40 CGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR-----PDRAAA  113 (223)
T ss_pred             ccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccC-----CChHHH
Confidence            555555555555555799999999999864   3568899999999999876 9999999988776432     245677


Q ss_pred             HHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         87 DALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        87 ~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ..+++++++.+ .+++.+.+|||||+||++|+|.|..-|++++  |||||+.+|+.....|
T Consensus       114 ~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL--LDE~TsALD~~nkr~i  172 (223)
T COG4619         114 LDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILL--LDEITSALDESNKRNI  172 (223)
T ss_pred             HHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEE--ecCchhhcChhhHHHH
Confidence            89999999975 4689999999999999999999999999988  9999999998765544

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.7e-23  Score=178.73  Aligned_cols=127  Identities=20%  Similarity=0.183  Sum_probs=101.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      |++++|+|++.    |++|+|+++|.++...      ..++.++|+||++  .+++.+|+.+++.+....+.  ......
T Consensus       365 TLlk~i~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~  438 (623)
T PRK10261        365 TTGRALLRLVE----SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKA  438 (623)
T ss_pred             HHHHHHHcCCC----CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHH
Confidence            67788888776    5899999999987532      1345699999997  47888999999987543321  112333


Q ss_pred             HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++. ...++++++|||||||||+||+||+.+|+++|  +||||+|+|+.++.
T Consensus       439 ~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lll--lDEPts~LD~~~~~  500 (623)
T PRK10261        439 AAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVII--ADEAVSALDVSIRG  500 (623)
T ss_pred             HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            456788999999996 56799999999999999999999999999998  99999999987543

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2e-23  Score=161.13  Aligned_cols=130  Identities=20%  Similarity=0.232  Sum_probs=100.7

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+. ..|++|+|.++|.++..     ...++.++|+||++.+++ .|+.+|+.+......  .......
T Consensus        53 STLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~  129 (260)
T PRK10744         53 STLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEM  129 (260)
T ss_pred             HHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHH
Confidence            37888999987621 12479999999998742     123567999999988777 799999976543221  1223334


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++.+.+|||||+||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       130 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  192 (260)
T PRK10744        130 DERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL--LDEPCSALDPIST  192 (260)
T ss_pred             HHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEE--EcCCCccCCHHHH
Confidence            45788899999974    45688899999999999999999999999998  9999999998754

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.90  E-value=1.2e-23  Score=159.00  Aligned_cols=127  Identities=19%  Similarity=0.179  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCC--CCCCHHHHHHHHHHhhcc-cCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKMD-RNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~   85 (156)
                      .+++++|+|++.    |++|+|.++|.++..  .++.++|+||++.++  ...|+.+++.+....... .........++
T Consensus        20 STLl~~l~G~~~----~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~   93 (223)
T TIGR03771        20 TTLLRAILGLIP----PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA   93 (223)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHH
Confidence            367888888876    489999999998642  345699999997653  347899998764211100 00111233456


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus        94 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lli--lDEP~~~LD~~~~  149 (223)
T TIGR03771        94 VRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLL--LDEPFTGLDMPTQ  149 (223)
T ss_pred             HHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            8889999999988899999999999999999999999999988  9999999998743

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.90  E-value=1e-23  Score=195.56  Aligned_cols=125  Identities=23%  Similarity=0.326  Sum_probs=105.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++|+|+|++.    |++|+|+++|.++...  ..++.+||+||++.+++.+|++|++.+....+   +......++.+
T Consensus      1979 TTLlkmL~Gll~----ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v 2051 (2272)
T TIGR01257      1979 TTTFKMLTGDTT----VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVA 2051 (2272)
T ss_pred             HHHHHHHhCCCC----CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHH
Confidence            367888888887    4899999999998532  34567999999999999999999998866553   22333445678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++++.+++.+..++++++||||||||++||+||+.+|++++  |||||+|+||.+
T Consensus      2052 ~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL--LDEPTsGLDp~s 2105 (2272)
T TIGR01257      2052 NWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL--LDEPTTGMDPQA 2105 (2272)
T ss_pred             HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHH
Confidence            889999999998999999999999999999999999999998  999999999874

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.5e-23  Score=160.40  Aligned_cols=131  Identities=19%  Similarity=0.193  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+.. .|++|+|+++|.++..     ..+++.++|++|++.+++. |+.+|+.+....+.. .......
T Consensus        59 STLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~  136 (267)
T PRK14235         59 STFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAEL  136 (267)
T ss_pred             HHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHH
Confidence            478899999886410 1479999999998752     1235678999999888875 999999875433210 0112233


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+    ..++.+.+||||||||++||+||+.+|+++|  |||||+|+|+.+.
T Consensus       137 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  199 (267)
T PRK14235        137 DEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL--MDEPCSALDPIAT  199 (267)
T ss_pred             HHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcCCCHHHH
Confidence            456788999999953    4578899999999999999999999999888  9999999998743

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.90  E-value=1.2e-23  Score=176.01  Aligned_cols=122  Identities=17%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++....    .+..+||++|++.+++.+|+.+++.+....       .....+
T Consensus        51 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~  119 (510)
T PRK15439         51 STLMKIIAGIVP----PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQ  119 (510)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHH
Confidence            378888888877    48999999999875321    124589999999889999999998764211       123345


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       120 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll--LDEPt~~LD~~~~  176 (510)
T PRK15439        120 KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI--LDEPTASLTPAET  176 (510)
T ss_pred             HHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCCCCCCHHHH
Confidence            68899999999988899999999999999999999999999888  9999999998744

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.7e-23  Score=158.66  Aligned_cols=130  Identities=19%  Similarity=0.228  Sum_probs=98.4

Q ss_pred             HHHHHHHhhhh--hcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRV--VHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~--~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|+.  .+. .+++|+|.++|.++...     ..++.++|+||++.+++ .|+.+|+.+....+.  ......
T Consensus        43 STLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~  118 (250)
T PRK14245         43 STFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAF  118 (250)
T ss_pred             HHHHHHHhhhhcccCC-CCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHH
Confidence            47889998873  220 02589999999987531     23456999999988776 599999976543321  111223


Q ss_pred             HHHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+.+.++++.+++.+    ..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+..
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~~  183 (250)
T PRK14245        119 IRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLL--MDEPASALDPISTA  183 (250)
T ss_pred             HHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence            4456788999999853    4678899999999999999999999999888  99999999987544

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.4e-23  Score=160.38  Aligned_cols=122  Identities=24%  Similarity=0.326  Sum_probs=97.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+++ .|+.+|+.+.....   .    ....+
T Consensus        43 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~  110 (241)
T PRK14250         43 STLIKLINRLID----PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVD  110 (241)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHH
Confidence            367888888876    5899999999987532   33567899999988776 59999987543221   1    12346


Q ss_pred             HHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++. +..++.+.+||||||||++||+|++.+|+++|  +||||+|+|+.+..
T Consensus       111 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~  168 (241)
T PRK14250        111 VEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL--LDEPTSALDPTSTE  168 (241)
T ss_pred             HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            77889999996 56789999999999999999999999999888  99999999987543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4.7e-23  Score=158.97  Aligned_cols=130  Identities=21%  Similarity=0.225  Sum_probs=99.2

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++|+|+|+..+.. ..++|+|.++|.++..     ...+..++|++|++.+++ .|+.+|+.+....+.  .......
T Consensus        47 STLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~  123 (259)
T PRK14260         47 STFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADL  123 (259)
T ss_pred             HHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHH
Confidence            378899999876410 0158999999998742     123457999999988887 899999976543321  1122233


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++.    +..++.+.+||+|||||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       124 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~  186 (259)
T PRK14260        124 DEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLL--MDEPCSALDPIAT  186 (259)
T ss_pred             HHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence            45677889998873    45688899999999999999999999999888  9999999997754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4.7e-23  Score=158.17  Aligned_cols=132  Identities=16%  Similarity=0.201  Sum_probs=99.5

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .+++++|+|+..+.. .|++|+|+++|.++...     ..++.++|+||++.+++. |+.+|+.+....+. ........
T Consensus        45 STLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~  122 (251)
T PRK14244         45 STFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKL  122 (251)
T ss_pred             HHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHH
Confidence            378899999875211 13699999999987421     235678999999888875 99999976533221 10112233


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+.++++.+++.+    ..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.+..
T Consensus       123 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  186 (251)
T PRK14244        123 DEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL--MDEPCSALDPVATN  186 (251)
T ss_pred             HHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence            456778899999964    4577889999999999999999999999888  99999999987543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.5e-23  Score=173.62  Aligned_cols=131  Identities=17%  Similarity=0.159  Sum_probs=101.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~   83 (156)
                      .|++++|+|++.|.  |++|+|+++|.++....    .++.++|+||++.+++.+|+.+++.+........ ........
T Consensus        41 STLl~~i~G~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~  118 (500)
T TIGR02633        41 STLMKILSGVYPHG--TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY  118 (500)
T ss_pred             HHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH
Confidence            37888888887631  26999999999875421    2356999999998889999999997653221000 01223344


Q ss_pred             HHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.+++.+.. ++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.+.
T Consensus       119 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lll--LDEPt~~LD~~~~  177 (500)
T TIGR02633       119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI--LDEPSSSLTEKET  177 (500)
T ss_pred             HHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEE--EeCCCCCCCHHHH
Confidence            5788999999998654 57799999999999999999999999888  9999999998744

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3e-23  Score=173.50  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=101.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhccc-C-CcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDR-N-LHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~-~-~~~   79 (156)
                      .|++|+|+|++.|   |++|+|+++|.+++..    ..+..++|++|++   .+++.+|+.+++.+........ . ...
T Consensus       302 STLlk~i~Gl~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  378 (506)
T PRK13549        302 TELVQCLFGAYPG---RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDD  378 (506)
T ss_pred             HHHHHHHhCCCCC---CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccCh
Confidence            3788888888763   4799999999987532    1245689999995   4678899999997643111100 0 122


Q ss_pred             HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ....+++.++++.+++. +..++++.+|||||||||+||+|++.+|+++|  |||||+|+|+.++.
T Consensus       379 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lll--LDEPt~~LD~~~~~  442 (506)
T PRK13549        379 AAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILI--LDEPTRGIDVGAKY  442 (506)
T ss_pred             HHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEE--EcCCCCCcCHhHHH
Confidence            23445788999999996 56899999999999999999999999999888  99999999987553

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.7e-23  Score=175.00  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCC---CCCCCCCCHHHHHHHHHHhh---cc--cC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQH---DLTVDTLTVHEHMTLMARLK---MD--RN   76 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~---~~~~~~ltv~e~l~~~~~~~---~~--~~   76 (156)
                      .|++|+|+|++.    |++|+|+++|.++...    ..++.+||+||+   ..+++++|+.+++.+....+   ..  .+
T Consensus       303 STLlk~i~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  378 (510)
T PRK09700        303 TELMNCLFGVDK----RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMG  378 (510)
T ss_pred             HHHHHHHhCCCc----CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccccccccc
Confidence            378888888887    4899999999987532    124568999998   35778899999987643211   00  01


Q ss_pred             -CcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         77 -LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        77 -~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                       ........++.++++.+++. +..++++.+|||||||||.||+||+.+|+++|  |||||+|+|+.++
T Consensus       379 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl--LDEPt~~LD~~~~  445 (510)
T PRK09700        379 LFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVII--FDEPTRGIDVGAK  445 (510)
T ss_pred             ccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEE--ECCCCCCcCHHHH
Confidence             11223345678999999997 67899999999999999999999999999988  9999999998744

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.2e-23  Score=158.24  Aligned_cols=130  Identities=18%  Similarity=0.225  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+. ..+++|+|+++|.++..     ...++.++|+||++.+++. |+.+|+.+....+.  .......
T Consensus        52 STLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~  128 (259)
T PRK14274         52 STFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKL  128 (259)
T ss_pred             HHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHH
Confidence            37899999988631 11258999999998742     1235679999999888875 99999976543221  1122333


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.+    ..++.+.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       129 ~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~~LD~~~~  191 (259)
T PRK14274        129 QEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLL--MDEPTSALDPVST  191 (259)
T ss_pred             HHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            456778899998853    4688899999999999999999999999888  9999999998744

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.90  E-value=2.4e-23  Score=159.80  Aligned_cols=125  Identities=21%  Similarity=0.185  Sum_probs=99.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..     .+|+|+++|.++...   ..++.++|+||++.+++..|+.+|+.+.....    .......++
T Consensus        36 STLl~~l~Gl~~-----~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~  106 (248)
T PRK03695         36 STLLARMAGLLP-----GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTEAVASA  106 (248)
T ss_pred             HHHHHHHcCCCC-----CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcHHHHHH
Confidence            368888888763     389999999987532   23455899999987788899999987652211    122233457


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc-------CCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ-------DCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~-------~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++.+..++++.+||+|||||++||+|++.       +|+++|  +||||+|+|+.++.
T Consensus       107 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll--lDEPt~~LD~~~~~  170 (248)
T PRK03695        107 LNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL--LDEPMNSLDVAQQA  170 (248)
T ss_pred             HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE--EcCCcccCCHHHHH
Confidence            8899999999888899999999999999999999997       679887  99999999987543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.90  E-value=6.3e-23  Score=157.83  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..|...+++|+|+++|.++.... .++.++|++|++.  +.+..++.+++.+.....   ...  ...++
T Consensus        43 STLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~  117 (254)
T PRK10418         43 SLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKP--ADDAT  117 (254)
T ss_pred             HHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCC--hHHHH
Confidence            378888888877532238999999999875432 2356999999974  345578888875543221   111  12356


Q ss_pred             HHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+   ..++.+.+||+|||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl--LDEPt~~LD~~~~  176 (254)
T PRK10418        118 LTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII--ADEPTTDLDVVAQ  176 (254)
T ss_pred             HHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE--EeCCCcccCHHHH
Confidence            788999999976   4688999999999999999999999999888  9999999997754

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7e-23  Score=157.07  Aligned_cols=130  Identities=20%  Similarity=0.227  Sum_probs=99.1

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+.. .+++|+|+++|.++..     ...++.++|++|++.+++ .|+.+|+.+....+.  .......
T Consensus        43 STLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~  119 (250)
T PRK14240         43 STFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKL  119 (250)
T ss_pred             HHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHH
Confidence            378889999865310 0268999999998753     123567899999988777 899999987543221  1122234


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++++.+||||||||++||||++.+|+++|  +||||+|+|+.+.
T Consensus       120 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  182 (250)
T PRK14240        120 DEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLL--MDEPTSALDPIST  182 (250)
T ss_pred             HHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            45677888898874    34588899999999999999999999999988  9999999998754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.6e-23  Score=157.76  Aligned_cols=130  Identities=19%  Similarity=0.225  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..|. ..|++|+|+++|.++...     ..++.++|+||++.+++ .|+.+|+.+......  .......
T Consensus        44 STLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~  120 (251)
T PRK14270         44 STFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKEL  120 (251)
T ss_pred             HHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHH
Confidence            47889999987641 113689999999987531     23566899999998887 899999987543321  1112233


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  183 (251)
T PRK14270        121 DKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVIL--MDEPTSALDPIST  183 (251)
T ss_pred             HHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            45677889999874    34678899999999999999999999999888  9999999998754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.7e-23  Score=160.70  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=99.8

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .+++++|+|+..+.. .|++|+|+++|.++..     ...++.++|+||++.+++. |+.+|+.+....+   .... ..
T Consensus        79 STLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~  153 (285)
T PRK14254         79 STFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DI  153 (285)
T ss_pred             HHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HH
Confidence            378888998876311 1479999999998742     1335679999999887775 9999998754332   1122 23


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.+.
T Consensus       154 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLL--LDEPts~LD~~~~  216 (285)
T PRK14254        154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVIL--MDEPASALDPVAT  216 (285)
T ss_pred             HHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCCCCHHHH
Confidence            45688899999985    35688899999999999999999999999888  9999999998754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.90  E-value=3.6e-23  Score=172.67  Aligned_cols=132  Identities=17%  Similarity=0.180  Sum_probs=101.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhcc--cCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMD--RNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~--~~~~~   79 (156)
                      .|++|+|+|++.|   |++|+|+++|.++...    ..++.+||++|+.   .+++.+|+.+++.+.......  .....
T Consensus       300 STLl~~l~G~~~p---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~  376 (500)
T TIGR02633       300 TELVQALFGAYPG---KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA  376 (500)
T ss_pred             HHHHHHHhCCCCC---CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence            3788888888874   3799999999987531    2245689999996   478889999998764311110  01122


Q ss_pred             HHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         80 VERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      .....++.++++.+++.. ..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++..
T Consensus       377 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll--LDEPt~~LD~~~~~~  441 (500)
T TIGR02633       377 AAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLI--LDEPTRGVDVGAKYE  441 (500)
T ss_pred             HHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEE--EcCCCCCcCHhHHHH
Confidence            334456889999999974 5799999999999999999999999999888  999999999875543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.8e-23  Score=158.46  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=98.5

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+.... ..|++|+|+++|.++...     ..++.++|++|++.+++. |+.+|+.+......  .......
T Consensus        61 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~  137 (268)
T PRK14248         61 STFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVL  137 (268)
T ss_pred             HHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHH
Confidence            37889999976410 014799999999987531     235679999999888875 99999976543221  1112223


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+.++++.+++.    +..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       138 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lll--LDEPt~~LD~~~~~  201 (268)
T PRK14248        138 DEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLL--LDEPASALDPISNA  201 (268)
T ss_pred             HHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEE--EcCCCcccCHHHHH
Confidence            45577788888884    44678899999999999999999999999888  99999999987543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.89  E-value=5.1e-23  Score=172.54  Aligned_cols=129  Identities=20%  Similarity=0.161  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhhh-cCCCCcceEEEEC-----------------------CEecC-------c------ccccceeeEecC
Q psy16753          9 FSGIHLLGQRVV-HELSDVDGQILLN-----------------------GLEVE-------K------NLMVKVSGFVPQ   51 (156)
Q Consensus         9 ~~~l~~l~g~~~-~~~~~~~G~I~~~-----------------------G~~i~-------~------~~~~~~ig~v~Q   51 (156)
                      .|++++|+|++. +   |++|+|+++                       |.++.       .      ...++.++|+||
T Consensus        40 STLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q  116 (520)
T TIGR03269        40 SVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ  116 (520)
T ss_pred             HHHHHHHhhcccCC---CCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEec
Confidence            378899999862 2   589999997                       32221       0      012456899999


Q ss_pred             C-CCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEe
Q psy16753         52 H-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKI  130 (156)
Q Consensus        52 ~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~  130 (156)
                      + ..+++.+|+.+++.+.....   +.......+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  
T Consensus       117 ~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lll--  191 (520)
T TIGR03269       117 RTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFL--  191 (520)
T ss_pred             cccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE--
Confidence            7 57788899999998754332   12333445678899999999888899999999999999999999999999888  


Q ss_pred             cCCCCCCCCchhhhe
Q psy16753        131 TDSQPRGKWPISALF  145 (156)
Q Consensus       131 ~Dep~~g~~~~~~~~  145 (156)
                      |||||+|+|+.++..
T Consensus       192 LDEPt~~LD~~~~~~  206 (520)
T TIGR03269       192 ADEPTGTLDPQTAKL  206 (520)
T ss_pred             eeCCcccCCHHHHHH
Confidence            999999999875544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.89  E-value=5.6e-23  Score=171.68  Aligned_cols=129  Identities=20%  Similarity=0.279  Sum_probs=100.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhccc--C-Cc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDR--N-LH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~--~-~~   78 (156)
                      .|++++|+|++.    |++|+|.++|.++...    ..++.+||+||++   .+++.+|+.+++.+........  . ..
T Consensus       292 STLl~~l~G~~~----p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  367 (501)
T PRK10762        292 TELMKVLYGALP----RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLK  367 (501)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccC
Confidence            367888888876    4899999999987532    1245699999996   4678899999997642111000  0 12


Q ss_pred             HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .....+++.++++.+++. +..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       368 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lll--LDEPt~~LD~~~~  431 (501)
T PRK10762        368 HADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLI--LDEPTRGVDVGAK  431 (501)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEE--EcCCCCCCCHhHH
Confidence            223345688999999995 67899999999999999999999999999888  9999999998744

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.89  E-value=8.9e-24  Score=160.79  Aligned_cols=129  Identities=17%  Similarity=0.213  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..    |++|+|+++|.++...   ..++.++|+||++.+++ .|+.+|+.+..................
T Consensus        42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~  116 (237)
T cd03252          42 STLTKLIQRFYV----PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAG  116 (237)
T ss_pred             HHHHHHHhcCcC----CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            367888888887    4899999999987532   23567999999987764 699999875321000000000000112


Q ss_pred             HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.+.++.+  ++....++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       117 ~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEP~~~LD~~~~~  175 (237)
T cd03252         117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILI--FDEATSALDYESEH  175 (237)
T ss_pred             cHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEE--EeCCcccCCHHHHH
Confidence            23445555  55555678899999999999999999999999888  99999999987543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.3e-23  Score=160.14  Aligned_cols=129  Identities=19%  Similarity=0.241  Sum_probs=98.5

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+.. .|++|+|.++|.++..     ...++.++|+||++.+++. |+.+|+.+....+   .... ..
T Consensus        53 STLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~  127 (269)
T PRK14259         53 STVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DM  127 (269)
T ss_pred             HHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HH
Confidence            378889999876311 1489999999998642     1235679999999988874 9999998764332   1111 23


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.    +..++++.+||+|||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       128 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEPt~gLD~~~~~  191 (269)
T PRK14259        128 DELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVIL--MDEPCSALDPISTL  191 (269)
T ss_pred             HHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence            34567788888763    45688899999999999999999999999888  99999999987543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.89  E-value=5.7e-24  Score=160.81  Aligned_cols=129  Identities=17%  Similarity=0.191  Sum_probs=96.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..    |++|+|.++|.++...   ..++.++|++|++.+++ .|+.+|+.+..................
T Consensus        54 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~  128 (226)
T cd03248          54 STVVALLENFYQ----PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAH  128 (226)
T ss_pred             HHHHHHHhcCcC----CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcC
Confidence            367888888876    4899999999876432   23466899999987775 599999875432110000001111123


Q ss_pred             HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.+.++.+  ++.+..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       129 ~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  187 (226)
T cd03248         129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI--LDEATSALDAESEQ  187 (226)
T ss_pred             cHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            56778888  78877888999999999999999999999999998  99999999977443

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=157.73  Aligned_cols=130  Identities=22%  Similarity=0.222  Sum_probs=100.0

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|.. .|++|+|.++|.++...     ..++.++|+||++.+++ .|+.+|+.+......  .......
T Consensus        60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~  136 (267)
T PRK14237         60 STYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVL  136 (267)
T ss_pred             HHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHH
Confidence            378899999876310 14799999999987421     23567999999988777 599999987543211  1122234


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    ...++++.+||+||+||++||||++.+|+++|  +||||+|+|+.++
T Consensus       137 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEPt~~LD~~~~  199 (267)
T PRK14237        137 DEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILL--MDEPASALDPIST  199 (267)
T ss_pred             HHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            45678889999884    35688899999999999999999999999888  9999999998743

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.89  E-value=9.8e-23  Score=157.06  Aligned_cols=127  Identities=15%  Similarity=0.091  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEe-----cCccc-------ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLE-----VEKNL-------MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMD   74 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~-----i~~~~-------~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~   74 (156)
                      .|++++|+|++.    |++|+|.++|.+     +....       .++.++|+||++.  +++..++.+++.+...... 
T Consensus        46 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~-  120 (258)
T PRK11701         46 TTLLNALSARLA----PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG-  120 (258)
T ss_pred             HHHHHHHhCCCC----CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc-
Confidence            367888888776    589999999987     54321       2346899999974  5667788888865322111 


Q ss_pred             cCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         75 RNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                       ..........+.++++.+++.+ ..++.+.+||||||||++|||||+.+|+++|  +||||+|+|+.+.
T Consensus       121 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~lll--lDEPt~~LD~~~~  187 (258)
T PRK11701        121 -ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF--MDEPTGGLDVSVQ  187 (258)
T ss_pred             -cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence             1112233456788999999974 6789999999999999999999999999988  9999999998754

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=156.01  Aligned_cols=129  Identities=22%  Similarity=0.207  Sum_probs=97.4

Q ss_pred             HHHHHHHhhhhh--cCCCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVV--HELSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~--~~~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|+..  |. .+++|+|+++|.++..     ...++.++|+||++.+++ .|+.+|+.+......  ......
T Consensus        45 STLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~  120 (252)
T PRK14239         45 STLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQV  120 (252)
T ss_pred             HHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHH
Confidence            378888888753  20 0158999999998742     123567999999988877 799999987543221  111222


Q ss_pred             HHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+.+.++++.+++.    +..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~  184 (252)
T PRK14239        121 LDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL--LDEPTSALDPISA  184 (252)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHHH
Confidence            345677889999874    34688899999999999999999999999888  9999999997744

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=155.56  Aligned_cols=131  Identities=18%  Similarity=0.198  Sum_probs=98.2

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|.. ..++|+|.++|.++..     ...+..++|++|++.+++..|+.+|+.+......  .......
T Consensus        44 STLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~  121 (252)
T PRK14272         44 TTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHL  121 (252)
T ss_pred             HHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHH
Confidence            378899999877520 0138999999998752     1235568999999988888999999976543221  0112223


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.+.++.+++.    +..++++.+||||||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       122 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  184 (252)
T PRK14272        122 MEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILL--MDEPTSALDPAST  184 (252)
T ss_pred             HHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            44566677777653    45688899999999999999999999999888  9999999998754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=155.84  Aligned_cols=130  Identities=17%  Similarity=0.180  Sum_probs=98.6

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+. ..|++|+|.++|.++..     ...++.++|++|++.+++ .|+.+|+.+......  .......
T Consensus        44 STLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~  120 (251)
T PRK14251         44 STFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELI  120 (251)
T ss_pred             HHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHH
Confidence            47889999987621 01379999999998742     123556899999988776 799999976543221  1112223


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++.    ...++.+.+|||||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~lll--lDEP~~~LD~~~~  183 (251)
T PRK14251        121 DQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVL--LDEPTSALDPISS  183 (251)
T ss_pred             HHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCCccCCHHHH
Confidence            45677889999984    44678899999999999999999999999888  9999999998754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.89  E-value=1.3e-22  Score=157.35  Aligned_cols=126  Identities=20%  Similarity=0.139  Sum_probs=98.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      +++++|+|++.    |++|+|.++|.++...      ..++.++|++|++  .+++..++.+++.+.....  .......
T Consensus        53 TLl~~l~Gl~~----p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~  126 (268)
T PRK10419         53 TLARLLVGLES----PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAE  126 (268)
T ss_pred             HHHHHHhCCCC----CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHH
Confidence            67888888776    5899999999987432      2356799999997  3556789999886543211  1122333


Q ss_pred             HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....+.++++.+++. ...++.+.+||+|||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       127 ~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll--LDEPt~~LD~~~~  187 (268)
T PRK10419        127 RLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI--LDEAVSNLDLVLQ  187 (268)
T ss_pred             HHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE--EeCCCcccCHHHH
Confidence            445788999999997 57799999999999999999999999999988  9999999998643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.89  E-value=8e-23  Score=174.67  Aligned_cols=126  Identities=16%  Similarity=0.129  Sum_probs=99.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecC----------c---c---cc-cceeeEecCCC--CCCCCCCHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVE----------K---N---LM-VKVSGFVPQHD--LTVDTLTVHEHMTLMAR   70 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~----------~---~---~~-~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~   70 (156)
                      |++++|+|++.    |++|+|.++|.++.          .   .   .. +..+||++|++  .+++.+|+.+++.+...
T Consensus        57 TLl~~l~Gll~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~  132 (623)
T PRK10261         57 VTALALMRLLE----QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIR  132 (623)
T ss_pred             HHHHHHHcCCC----CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHH
Confidence            67778888776    48999999997441          0   0   11 24689999997  56788999999988654


Q ss_pred             hhcccCCcHHHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         71 LKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.  ........+++.++++.+++.+   ..++++.+|||||||||+||+||+.+|+++|  +||||+|||+.++
T Consensus       133 ~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLl--lDEPt~~LD~~~~  204 (623)
T PRK10261        133 LHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI--ADEPTTALDVTIQ  204 (623)
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEE--EeCCCCccCHHHH
Confidence            321  2234445567889999999953   4689999999999999999999999999888  9999999998863

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=5.5e-23  Score=187.90  Aligned_cols=131  Identities=23%  Similarity=0.367  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+..+.  +.+|+|.++|.+......++.+||++|++.+++.+|++|++.+....+.+.........+.+++
T Consensus       920 TTLL~~LaG~~~~g--~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~  997 (1470)
T PLN03140        920 TTLMDVLAGRKTGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDE  997 (1470)
T ss_pred             HHHHHHHcCCCCCC--cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            37899999986532  3689999999887543445678999999999999999999998765543222233334457899


Q ss_pred             HHHHcCCCccccCcc-----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVL-----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~-----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++|.+..|+.+     ++|||||||||+||++|+.+|++++  |||||+|||+.++
T Consensus       998 vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~--LDEPTsgLD~~~a 1055 (1470)
T PLN03140        998 VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 1055 (1470)
T ss_pred             HHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE--EeCCCCCCCHHHH
Confidence            999999998888886     5899999999999999999999987  9999999997743

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=155.74  Aligned_cols=130  Identities=16%  Similarity=0.188  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|.. .+++|+|+++|.++..     ...++.++|+||++.+++. |+.+|+.+....+..  ......
T Consensus        44 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~  120 (251)
T PRK14249         44 STLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRL  120 (251)
T ss_pred             HHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHH
Confidence            378889999887520 1136999999998742     1335679999999988875 999999875433210  111223


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++.    +..++.+.+||+|||||++||||++.+|+++|  |||||+|+|+.+.
T Consensus       121 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  183 (251)
T PRK14249        121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL--MDEPCSALDPVST  183 (251)
T ss_pred             HHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            34567778888864    45688999999999999999999999999988  9999999997744

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=159.01  Aligned_cols=130  Identities=15%  Similarity=0.183  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .+++++|+|+..... .|++|+|.++|.++...     ..++.++|++|++.+++. |+.+|+.+....+.  .......
T Consensus        79 STLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~  155 (286)
T PRK14275         79 STFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQL  155 (286)
T ss_pred             HHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHH
Confidence            378888888754110 03799999999987421     235679999999888775 99999987543221  0112223


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       156 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll--LDEPt~gLD~~~~  218 (286)
T PRK14275        156 EEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILL--LDEPTSALDPKAT  218 (286)
T ss_pred             HHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            45677888888873    45688899999999999999999999999888  9999999997744

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.89  E-value=9e-23  Score=171.40  Aligned_cols=128  Identities=20%  Similarity=0.178  Sum_probs=100.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~   80 (156)
                      .|++|+|+|++.     ++|+|+++|.++...      .+++.++|+||++  .+++.+|+.+++.+....+. ......
T Consensus       326 STLlk~l~Gl~~-----~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~  399 (529)
T PRK15134        326 STTGLALLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAA  399 (529)
T ss_pred             HHHHHHHhCcCC-----CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChH
Confidence            367888888863     599999999987532      1245689999997  36788999999987543221 012223


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ...+++.++++.+++. +..++++.+|||||||||+||+|++.+|+++|  |||||+|+|+.++.
T Consensus       400 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~~  462 (529)
T PRK15134        400 QREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLII--LDEPTSSLDKTVQA  462 (529)
T ss_pred             HHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEE--eeCCccccCHHHHH
Confidence            3446788999999997 46799999999999999999999999999988  99999999987543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.7e-22  Score=155.27  Aligned_cols=130  Identities=18%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             HHHHHHHhhhhhcCCC-CcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELS-DVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~-~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+... +++|+|.++|.++...     ..++.++|++|++.+++. |+.+|+.+....+.  .......
T Consensus        46 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~  122 (253)
T PRK14261         46 STLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTL  122 (253)
T ss_pred             HHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHH
Confidence            3788899998653210 2589999999987531     235668999999988875 99999987644321  1122233


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++.    ...++.+.+||+|||||+.||+|++.+|+++|  +||||+|+|+.+.
T Consensus       123 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEP~~gLD~~~~  185 (253)
T PRK14261        123 DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL--MDEPCSALDPIAT  185 (253)
T ss_pred             HHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            45677888888874    34678899999999999999999999999998  9999999997744

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.89  E-value=1.9e-23  Score=158.64  Aligned_cols=128  Identities=22%  Similarity=0.241  Sum_probs=93.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..    |++|+|+++|.++...   ..++.++|++|++.+++ .|+.+|+.+..................
T Consensus        42 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  116 (234)
T cd03251          42 STLVNLIPRFYD----VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAAN  116 (234)
T ss_pred             HHHHHHHhcccc----CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            367888888877    4899999999987432   23566899999988776 699999876422110000000001112


Q ss_pred             HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+.++.+  ++....++++.+||+|||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       117 ~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--LDEP~~~LD~~~~  174 (234)
T cd03251         117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI--LDEATSALDTESE  174 (234)
T ss_pred             cHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence            45566666  66667788899999999999999999999999888  9999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=8.6e-23  Score=186.47  Aligned_cols=131  Identities=24%  Similarity=0.343  Sum_probs=107.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+..+. .+++|+|.++|.++.. ..++.+||++|++.+++.+|++|++.+....+.+.........+++++
T Consensus       803 STLL~~Lag~~~~g-~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~  880 (1394)
T TIGR00956       803 TTLLNVLAERVTTG-VITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE  880 (1394)
T ss_pred             HHHHHHHhCCCCCC-CcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            37899999987632 1478999999999853 346779999999888899999999998776553322333344567899


Q ss_pred             HHHHcCCCccccCccC----cCChHHHHHHHHHHHHhcCCC-eeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLN----VLSGGERKRVALAVQVSQDCS-RVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~----~LSgGerqrv~LA~AL~~~p~-ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..|+.++    +||||||||++||++|+.+|+ +++  |||||+|+|+.++
T Consensus       881 ~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl--LDEPTsgLD~~~~  938 (1394)
T TIGR00956       881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF--LDEPTSGLDSQTA  938 (1394)
T ss_pred             HHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE--EcCCCCCCCHHHH
Confidence            9999999988898887    799999999999999999997 777  9999999997744

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.7e-22  Score=154.92  Aligned_cols=130  Identities=19%  Similarity=0.235  Sum_probs=99.4

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+.. .|++|+|.++|.++...     ..++.++|+||++.+++ .|+.+|+.+....+.  .......
T Consensus        43 STLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~  119 (250)
T PRK14262         43 TTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKL  119 (250)
T ss_pred             HHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHH
Confidence            378899999876310 13799999999987531     23567999999988877 799999987543221  1112223


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++.+    ..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       120 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~lll--lDEP~~~LD~~~~  182 (250)
T PRK14262        120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL--LDEPTSALDPIAT  182 (250)
T ss_pred             HHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEE--EeCCccccCHHHH
Confidence            455778889988853    4688899999999999999999999999888  9999999998744

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.89  E-value=2.1e-23  Score=157.04  Aligned_cols=120  Identities=24%  Similarity=0.228  Sum_probs=91.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|+..    |++|+|+++|.++...   ..++.++|++|++.+++ .|+.+++.+....     .    ..+.
T Consensus        44 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~----~~~~  109 (220)
T cd03245          44 STLLKLLAGLYK----PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----A----DDER  109 (220)
T ss_pred             HHHHHHHhcCcC----CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----C----CHHH
Confidence            367888888876    4899999999987431   23456899999988776 5999998653211     1    1234


Q ss_pred             HHHHHHHcCCCccccCc-----------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLLKCKNSV-----------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~-----------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++.+..++.           +.+||||||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       110 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~  177 (220)
T cd03245         110 ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL--LDEPTSAMDMNSEE  177 (220)
T ss_pred             HHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHHH
Confidence            55677888887655554           46999999999999999999999888  99999999987543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.89  E-value=7.7e-23  Score=159.03  Aligned_cols=129  Identities=16%  Similarity=0.110  Sum_probs=99.0

Q ss_pred             HHHHHHHhhhhhcCCCCc--------ceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-ccC
Q psy16753          9 FSGIHLLGQRVVHELSDV--------DGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRN   76 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~--------~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~   76 (156)
                      .|++++|+|++.|    +        +|+|.++|.++...   ..++.++|+||++..++..|+.+|+.+...... ...
T Consensus        41 STLl~~laG~~~p----~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  116 (272)
T PRK13547         41 STLLKALAGDLTG----GGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAG  116 (272)
T ss_pred             HHHHHHHhCCCCC----cccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccc
Confidence            3788888888764    5        89999999987532   234558999999766666899999976431110 001


Q ss_pred             CcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCchhh
Q psy16753         77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        77 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .......+.+.++++.+++.+..++++.+||||||||++||+||+         .+|+++|  |||||+|+|+.+.
T Consensus       117 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll--LDEPt~~LD~~~~  190 (272)
T PRK13547        117 ALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL--LDEPTAALDLAHQ  190 (272)
T ss_pred             cCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE--EcCccccCCHHHH
Confidence            111233456788999999998889999999999999999999999         5999888  9999999997743

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=6.8e-23  Score=159.81  Aligned_cols=128  Identities=19%  Similarity=0.183  Sum_probs=96.1

Q ss_pred             HHHHHhhhhh-cCCCCcceEEEECCEecCcc-------cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCC-cH
Q psy16753         11 GIHLLGQRVV-HELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNL-HH   79 (156)
Q Consensus        11 ~l~~l~g~~~-~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~-~~   79 (156)
                      +-+.|.|++. +.-.-.+|+|.|+|.++.+.       .+.+.++++||++.  +.|-.++.+.+......+.  .. ..
T Consensus        47 ~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~  124 (316)
T COG0444          47 LAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSK  124 (316)
T ss_pred             HHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhh
Confidence            3445556655 21123779999999987432       12356899999964  5677889998877665542  12 24


Q ss_pred             HHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         80 VERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++..+++.++++.+++.+   ..+.++++|||||+|||+||+|++.+|+++|  .||||.+||++.
T Consensus       125 ~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI--ADEPTTALDvt~  188 (316)
T COG0444         125 KEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI--ADEPTTALDVTV  188 (316)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE--eCCCcchhhHHH
Confidence            456778999999999974   5699999999999999999999999999887  999777666553

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=157.25  Aligned_cols=131  Identities=18%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.+. ..|++|+|.++|.++..     ...++.++|+||++.+++. |+.+|+.+....+.  .......
T Consensus        64 STLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~  140 (271)
T PRK14238         64 STYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTL  140 (271)
T ss_pred             HHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHH
Confidence            37889999987621 11489999999998742     1235679999999888774 99999987643221  0112222


Q ss_pred             HHHHHHHHHHcC----CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELG----LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~----L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ...+.+.++.++    +.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+..
T Consensus       141 ~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lll--LDEPt~~LD~~~~~  204 (271)
T PRK14238        141 DEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVIL--MDEPTSALDPISTL  204 (271)
T ss_pred             HHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCcCCHHHHH
Confidence            345667777774    3445688899999999999999999999999888  99999999987543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.89  E-value=2.9e-23  Score=176.15  Aligned_cols=122  Identities=20%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||+++|+.++...+ |++|+|.++|.++..   ..+++.++||+|++.+|+. |++||+.++..     ...    .+++
T Consensus       387 sGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~----~eei  455 (588)
T PRK11174        387 AGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DAS----DEQL  455 (588)
T ss_pred             CCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCC----HHHH
Confidence            34444444444444 479999999998864   3467889999999998875 99999987521     111    2234


Q ss_pred             HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++..++           +.........||||||||++||||++.+|+++|  |||||+++|+.+..
T Consensus       456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili--LDE~TSaLD~~te~  522 (588)
T PRK11174        456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL--LDEPTASLDAHSEQ  522 (588)
T ss_pred             HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHHH
Confidence            444444443           222333446799999999999999999999988  99999999977543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=3e-23  Score=150.54  Aligned_cols=124  Identities=20%  Similarity=0.222  Sum_probs=103.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc----------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM   73 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~   73 (156)
                      |+++||.=+..    |+.|.|.++|+.+.-.                ..|.+.|+|||+..++..+|+.||+..+ ..+.
T Consensus        47 TfLRCiN~LE~----P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhV  121 (256)
T COG4598          47 TFLRCINFLEK----PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHV  121 (256)
T ss_pred             HHHHHHHhhcC----CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHh
Confidence            67788877777    4899999999987310                1244579999999999999999998653 2232


Q ss_pred             ccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        74 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      . +.++.+..++++.++.++|+.+..+.++..|||||+||++|||||+.+|++++  +||||+.+||-
T Consensus       122 L-g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmL--FDEPTSALDPE  186 (256)
T COG4598         122 L-GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML--FDEPTSALDPE  186 (256)
T ss_pred             h-cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEe--ecCCcccCCHH
Confidence            1 34566777899999999999999999999999999999999999999999998  99999999985

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=154.30  Aligned_cols=130  Identities=19%  Similarity=0.178  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+. ..|++|+|.++|.++..     ...++.++|+||++.+|+. |+.+|+.+....+  ........
T Consensus        43 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~  119 (250)
T PRK14266         43 STFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFI  119 (250)
T ss_pred             HHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHH
Confidence            37889999986521 11379999999998753     1235679999999888875 9999997654322  11122234


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++.+.+||+|||||++||+||+.+|+++|  +||||+|+|+.++
T Consensus       120 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEP~~gLD~~~~  182 (250)
T PRK14266        120 EERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVIL--MDEPCSALDPIST  182 (250)
T ss_pred             HHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCCccCCHHHH
Confidence            56778889999874    34578899999999999999999999999888  9999999998754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.89  E-value=1.5e-22  Score=170.09  Aligned_cols=131  Identities=14%  Similarity=0.105  Sum_probs=99.8

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc------cc-cceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN------LM-VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~------~~-~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~   78 (156)
                      .|++++|+|++.|. ..|++|+|+++|.++...      .. ++.+||+||++.  +++..++.+++.+......  ...
T Consensus        49 STLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~  126 (529)
T PRK15134         49 SVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMR  126 (529)
T ss_pred             HHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCC
Confidence            36788888888741 113799999999987532      11 246999999974  5567789998865432211  123


Q ss_pred             HHHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         79 HVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .....+++.++++.+++.+   ..++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.++
T Consensus       127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll--lDEPt~~LD~~~~  192 (529)
T PRK15134        127 REAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI--ADEPTTALDVSVQ  192 (529)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE--EcCCCCccCHHHH
Confidence            3344567889999999975   3588999999999999999999999999888  9999999998754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.89  E-value=1.3e-22  Score=169.94  Aligned_cols=131  Identities=14%  Similarity=0.123  Sum_probs=98.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCC---CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|+..    |++|+|+++|.++....    .+..++|+||++   .+++..|+.+++................
T Consensus       303 STLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~  378 (510)
T PRK15439        303 TELAETLYGLRP----ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR  378 (510)
T ss_pred             HHHHHHHcCCCC----CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH
Confidence            367888888776    58999999999875321    234689999984   4678889999985421110000011222


Q ss_pred             HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ..+.+.++++.+++. +..++++.+||||||||+.||+|++.+|+++|  |||||+|+|+.++..
T Consensus       379 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLl--LDEPt~gLD~~~~~~  441 (510)
T PRK15439        379 ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLI--VDEPTRGVDVSARND  441 (510)
T ss_pred             HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEE--ECCCCcCcChhHHHH
Confidence            345678999999997 67899999999999999999999999999888  999999999875543

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.7e-22  Score=155.87  Aligned_cols=130  Identities=18%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+. ..|++|+|+++|.++...     ..++.++|++|++.+++. |+.+|+.+......  .......
T Consensus        65 STLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~  141 (272)
T PRK14236         65 STLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVL  141 (272)
T ss_pred             HHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHH
Confidence            37889999987631 114799999999987531     235678999999888876 99999976543221  1112223


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++.+++.+    ..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       142 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--LDEPt~gLD~~~~  204 (272)
T PRK14236        142 DEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLL--LDEPTSALDPIST  204 (272)
T ss_pred             HHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEE--EeCCcccCCHHHH
Confidence            456778899988853    4678899999999999999999999999998  9999999998753

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.4e-22  Score=155.38  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=98.7

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|++.|. ..|++|+|+++|.++..     ...++.++|+||++.++ ..|+.+|+.+....+.   . ....
T Consensus        48 STLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~  122 (261)
T PRK14263         48 STVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDL  122 (261)
T ss_pred             HHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHH
Confidence            37889999998741 11369999999998742     12356689999998877 5899999987643321   1 1223


Q ss_pred             HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .+.+.++++.+++.+    ..++++.+||+||+||++||||++.+|+++|  +||||+|+|+.+
T Consensus       123 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPtsgLD~~~  184 (261)
T PRK14263        123 GDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLL--LDEPCSALDPIA  184 (261)
T ss_pred             HHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHH
Confidence            456888999999854    3467788999999999999999999999998  999999999875

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.88  E-value=9.7e-23  Score=158.33  Aligned_cols=130  Identities=20%  Similarity=0.188  Sum_probs=95.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCC--CCCCHHHHHHHHHHhhc-ccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKM-DRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|.++|.++.....+..++|+||++.+.  ...++.+++.+...... ..........++
T Consensus        47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  122 (272)
T PRK15056         47 STLFKALMGFVR----LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI  122 (272)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHH
Confidence            367888888877    48999999999875332234589999997542  23467777654311000 000111223456


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.+..
T Consensus       123 ~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll--lDEPt~~LD~~~~~  179 (272)
T PRK15056        123 VTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL--LDEPFTGVDVKTEA  179 (272)
T ss_pred             HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence            7788999999888899999999999999999999999999888  99999999987443

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.8e-22  Score=156.16  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.|. -.|++|+|.++|.++...    .++..++|++|++.+++ .|+.+|+.+......  ........
T Consensus        61 STLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~  137 (276)
T PRK14271         61 TTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFR  137 (276)
T ss_pred             HHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHH
Confidence            37888888887641 013699999999987531    23567899999988887 799999976543221  11233334


Q ss_pred             HHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+.++++.+++..    ..++.+.+||+||+||++||||++.+|+++|  +||||+|+|+.++
T Consensus       138 ~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lll--LDEPt~~LD~~~~  199 (276)
T PRK14271        138 GVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL--LDEPTSALDPTTT  199 (276)
T ss_pred             HHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence            45678899999863    3578899999999999999999999999888  9999999998754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.88  E-value=1.3e-22  Score=170.09  Aligned_cols=126  Identities=22%  Similarity=0.195  Sum_probs=97.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEEC-CEe---cCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLN-GLE---VEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~-G~~---i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~   78 (156)
                      .|++++|+|++.    |++|+|+++ |.+   +...      ..++.++|+||++.+++.+|+.+++.+.....    ..
T Consensus       324 STLl~~l~Gl~~----p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~  395 (520)
T TIGR03269       324 TTLSKIIAGVLE----PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LP  395 (520)
T ss_pred             HHHHHHHhCCCC----CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CC
Confidence            377888888876    589999995 532   2211      12456899999988888999999997643221    12


Q ss_pred             HHHHHHHHHHHHHHcCCCc-----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         79 HVERARTVDALLKELGLLK-----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~-----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .....+++.++++.+++.+     ..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus       396 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLl--lDEPt~~LD~~~~~  464 (520)
T TIGR03269       396 DELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVI--LDEPTGTMDPITKV  464 (520)
T ss_pred             HHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            2233456788999999964     4689999999999999999999999999988  99999999977443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.5e-22  Score=153.13  Aligned_cols=130  Identities=16%  Similarity=0.155  Sum_probs=98.2

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|+..+. -.|++|+|+++|.++..    ...++.++|+||++.+++ .|+.+|+.+......  ........
T Consensus        43 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~  119 (249)
T PRK14253         43 STLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLD  119 (249)
T ss_pred             HHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHH
Confidence            37889999987741 01368999999998742    133566899999988887 799999976543211  01122233


Q ss_pred             HHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+.++.+++.    +..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  181 (249)
T PRK14253        120 EVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVIL--MDEPTSALDPIAT  181 (249)
T ss_pred             HHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHH
Confidence            5667788888874    34678899999999999999999999999888  9999999998754

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1e-22  Score=170.04  Aligned_cols=132  Identities=18%  Similarity=0.246  Sum_probs=100.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhc-ccC--Cc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKM-DRN--LH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~-~~~--~~   78 (156)
                      .|++|+|+|+..    |++|+|+++|+++...    ..++.++|+||++   .+++..|+.+++.+...... ...  ..
T Consensus       293 STLlk~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  368 (501)
T PRK11288        293 SELMKLLYGATR----RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLIN  368 (501)
T ss_pred             HHHHHHHcCCCc----CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccC
Confidence            367888888876    5899999999987421    1245689999986   37888999999876432110 001  11


Q ss_pred             HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      .....+.+.++++.+++. +..++++.+|||||||||.||+|++.+|+++|  |||||+|+|+.++..+
T Consensus       369 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lll--LDEPt~~LD~~~~~~l  435 (501)
T PRK11288        369 NRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVIL--LDEPTRGIDVGAKHEI  435 (501)
T ss_pred             hHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEE--EcCCCCCCCHhHHHHH
Confidence            223345678999999994 67899999999999999999999999999988  9999999998755433

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.88  E-value=3.4e-23  Score=156.79  Aligned_cols=123  Identities=21%  Similarity=0.209  Sum_probs=89.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH-
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-   84 (156)
                      .|++++|+|++.    |++|+|+++|.++...   ..++.++|+||++.+++. |+.+|+.+.....     ......+ 
T Consensus        43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~~~~~~~  112 (229)
T cd03254          43 TTLINLLMRFYD----PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TDEEVIEA  112 (229)
T ss_pred             HHHHHHHhcCcC----CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CHHHHHHH
Confidence            368888888877    4899999999987531   335668999999887775 9999987542110     1111110 


Q ss_pred             ----HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 ----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ----~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          .+.+.++.+  ++....++.+.+||+|||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       113 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~lll--lDEP~~~LD~~~~  175 (229)
T cd03254         113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILI--LDEATSNIDTETE  175 (229)
T ss_pred             HHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence                122334443  45555567789999999999999999999999998  9999999997643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.6e-22  Score=155.35  Aligned_cols=128  Identities=16%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+..+.. .|++|+|+++|.++..     ...++.++|++|++.+++ .|+.+|+.+....+   ... ...
T Consensus        50 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~  124 (264)
T PRK14243         50 STILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDM  124 (264)
T ss_pred             HHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHH
Confidence            478899999876310 1379999999998742     123566999999988777 49999997654322   111 122


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++.    +..++.+.+||||||||++|||||+.+|+++|  +||||+|+|+.++
T Consensus       125 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  187 (264)
T PRK14243        125 DELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL--MDEPCSALDPIST  187 (264)
T ss_pred             HHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            34566778887773    34678899999999999999999999999888  9999999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.88  E-value=1.4e-22  Score=155.53  Aligned_cols=114  Identities=20%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.         .++|++|+...++..|+.+++.+.....   . .   ......+
T Consensus        39 STLlk~L~G~~~----p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~-~---~~~~~~~   98 (246)
T cd03237          39 TTFIKMLAGVLK----PDEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF---Y-T---HPYFKTE   98 (246)
T ss_pred             HHHHHHHhCCCc----CCCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhc---c-c---cHHHHHH
Confidence            367888888877    48999999885         4789999987777889999986542211   0 0   1224567


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+||||||||++||+||+.+|+++|  +||||+|+|+.++.
T Consensus        99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~lll--lDEPt~~LD~~~~~  152 (246)
T cd03237          99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYL--LDEPSAYLDVEQRL  152 (246)
T ss_pred             HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            8999999888899999999999999999999999999998  99999999987543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=4.5e-22  Score=152.75  Aligned_cols=131  Identities=19%  Similarity=0.181  Sum_probs=96.6

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++++|+|+.... ..+++|+|+++|.++..     ...++.++|++|++.+++ .|+.+|+.+....+.  .......
T Consensus        45 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~  121 (252)
T PRK14255         45 STYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVL  121 (252)
T ss_pred             HHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHH
Confidence            37888898876421 00258999999998742     123467999999988887 699999977543221  0111222


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+.+.++.+++.    +..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       122 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~~LD~~~~~  185 (252)
T PRK14255        122 DEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL--LDEPTSALDPISST  185 (252)
T ss_pred             HHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence            34566778888763    45678899999999999999999999999888  99999999987543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=1.2e-22  Score=145.38  Aligned_cols=125  Identities=22%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecC--c-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--K-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .|++++|.=+..|    .+|+..+.|....  +       ...|+.+|+|||+..++|.+||.||+..+ ..+. .+++.
T Consensus        42 ssllr~lnlle~p----~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv-~gl~~  115 (242)
T COG4161          42 SSLLRVLNLLEMP----RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRV-LGLSK  115 (242)
T ss_pred             HHHHHHHHHHhCC----CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHH-hCCCH
Confidence            4677777766664    7999999886432  1       13467799999999999999999998653 2222 24567


Q ss_pred             HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+...++.++++++.+.+..|+.+-.|||||+|||+|||||+.+|++++  +||||+.+||-
T Consensus       116 ~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvll--fdeptaaldpe  175 (242)
T COG4161         116 DQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLL--FDEPTAALDPE  175 (242)
T ss_pred             HHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEe--ecCcccccCHH
Confidence            7788889999999999999999999999999999999999999999998  99999999985

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.9e-22  Score=153.89  Aligned_cols=127  Identities=18%  Similarity=0.218  Sum_probs=96.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECC------EecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNG------LEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G------~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .+++++|+|++.|    ++|+|.++|      .++..   ...++.++|++|++.+++..|+.+|+.+......  ....
T Consensus        50 STLl~~iaG~~~~----~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~  123 (257)
T PRK14246         50 STLLKVLNRLIEI----YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEK  123 (257)
T ss_pred             HHHHHHHhCCCCC----CcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCH
Confidence            4678888888774    675555554      54432   1235678999999998888999999987643221  1122


Q ss_pred             HHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         80 VERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....+.+.++++.+++.    +..++.+..||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~lll--lDEPt~~LD~~~~  189 (257)
T PRK14246        124 REIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL--MDEPTSMIDIVNS  189 (257)
T ss_pred             HHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCCccCCHHHH
Confidence            23445678899999996    34678899999999999999999999999988  9999999998853

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.88  E-value=3.4e-23  Score=173.82  Aligned_cols=124  Identities=26%  Similarity=0.267  Sum_probs=90.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      ||+++|..++...++|++|+|.++|.++...  .+++.++||||++.+|+. |++||+.++...         ...+++.
T Consensus       372 sGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~---------~~~e~i~  441 (529)
T TIGR02868       372 SGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPD---------ATDEELW  441 (529)
T ss_pred             CCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCC---------CCHHHHH
Confidence            3444444444444446999999999987643  456789999999999876 999999875211         1223456


Q ss_pred             HHHHHcCCCc-------cccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         88 ALLKELGLLK-------CKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        88 ~~l~~~~L~~-------~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ++++..++.+       ..|+.+    .+||||||||++||||++.+|+++|  |||||+++|+.+...
T Consensus       442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili--LDE~TSaLD~~te~~  508 (529)
T TIGR02868       442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL--LDEPTEHLDAGTESE  508 (529)
T ss_pred             HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHHH
Confidence            6677666643       224433    5699999999999999999999988  999999999875443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=2.5e-22  Score=166.37  Aligned_cols=130  Identities=19%  Similarity=0.186  Sum_probs=98.4

Q ss_pred             HHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753         11 GIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus        11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      +.++|.|+..+....++|+|.|+|.++...       .+...++|+||++..  -|-+|+.+.+......+..  ....+
T Consensus        51 ~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~e  128 (539)
T COG1123          51 LALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAE  128 (539)
T ss_pred             HHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHH
Confidence            344555555543333589999999976432       123668999999753  4557888888776655532  23667


Q ss_pred             HHHHHHHHHHHcCCCcccc--CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLKCKN--SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~--~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.++|.+...  +++++||||||||++||+||+.+|+++|  +||||.++|+++|.
T Consensus       129 a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLI--aDEPTTaLDvt~q~  191 (539)
T COG1123         129 ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI--ADEPTTALDVTTQA  191 (539)
T ss_pred             HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEE--ECCCccccCHHHHH
Confidence            7788999999999976554  5999999999999999999999999887  99988888776553

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.9e-22  Score=155.18  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=96.8

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .+++++|+|+..+.. .|++|+|.++|.++..     ...++.++|+||++.+++. |+.+|+.+....+   .... ..
T Consensus        60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~~-~~  134 (274)
T PRK14265         60 STLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYKG-NL  134 (274)
T ss_pred             HHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---CchH-HH
Confidence            378888998876310 0258999999998742     1235679999999887764 9999997654322   1111 22


Q ss_pred             HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+.++++.+++.    +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++.
T Consensus       135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll--LDEPt~~LD~~~~~  198 (274)
T PRK14265        135 DELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLL--MDEPCSALDPISTR  198 (274)
T ss_pred             HHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEE--EeCCcccCCHHHHH
Confidence            34466778888763    45678899999999999999999999999998  99999999987543

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.88  E-value=2.1e-22  Score=150.24  Aligned_cols=105  Identities=28%  Similarity=0.350  Sum_probs=84.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.+. .|++|+|.++|.++...  ..++.++|++|++.+++.+|+.+++.+....      .        
T Consensus        47 STLl~~l~G~~~~~-~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~--------  111 (202)
T cd03233          47 STLLKALANRTEGN-VSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC------K--------  111 (202)
T ss_pred             HHHHHHhcccCCCC-CCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh------c--------
Confidence            36788888887621 14899999999987542  3456789999999888999999998754211      0        


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                                  .++++..||+||+||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       112 ------------~~~~~~~LS~Ge~qrl~laral~~~p~lll--lDEPt~~LD~~~  153 (202)
T cd03233         112 ------------GNEFVRGISGGERKRVSIAEALVSRASVLC--WDNSTRGLDSST  153 (202)
T ss_pred             ------------cccchhhCCHHHHHHHHHHHHHhhCCCEEE--EcCCCccCCHHH
Confidence                        467788999999999999999999999888  999999999763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=1.6e-22  Score=167.52  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=97.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEec--Ccc---cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEV--EKN---LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i--~~~---~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      |+.|+|+|+..    |++|+|.++|.+.  +..   ..++.+.++||++.  +.|..|+.+.+......+...  .....
T Consensus       332 Tlar~i~gL~~----P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~  405 (539)
T COG1123         332 TLARILAGLLP----PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAER  405 (539)
T ss_pred             HHHHHHhCCCC----CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHH
Confidence            44455555555    6999999999873  211   23456788999864  578999999988766554321  23445


Q ss_pred             HHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++.++++.++|.+ .+++++++||||||||++|||||+.+|+++|  +||||+.|||..+.
T Consensus       406 ~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli--~DEp~SaLDvsvqa  466 (539)
T COG1123         406 RARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI--LDEPVSALDVSVQA  466 (539)
T ss_pred             HHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE--ecCCccccCHHHHH
Confidence            567999999999986 6899999999999999999999999999888  99988888876443

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.88  E-value=1.6e-22  Score=164.51  Aligned_cols=128  Identities=22%  Similarity=0.199  Sum_probs=108.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .||+|+|+|.+.|    ++|+|+++|+++.-.    ..+..||+|+|++.+++++||.||+..+.........+.....+
T Consensus        44 STLm~iL~G~~~P----~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~  119 (501)
T COG3845          44 STLMKILFGLYQP----DSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA  119 (501)
T ss_pred             HHHHHHHhCcccC----CcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHH
Confidence            4789999999985    899999999987421    33566899999999999999999998765432111245667788


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++++.++.|+.-..+.++.+||-|+||||+|.+||..+|+++|  |||||+=|.|..
T Consensus       120 ~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI--LDEPTaVLTP~E  175 (501)
T COG3845         120 RIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI--LDEPTAVLTPQE  175 (501)
T ss_pred             HHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE--EcCCcccCCHHH
Confidence            99999999999988999999999999999999999999999887  999999998873

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.88  E-value=6.9e-23  Score=155.72  Aligned_cols=123  Identities=19%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH-
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-   84 (156)
                      .|++++|+|+..    |++|+|.++|.++...   ..++.++|++|++.+++ .|+.+|+.+....     .......+ 
T Consensus        41 STLl~~i~Gl~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~  110 (236)
T cd03253          41 STILRLLFRFYD----VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEA  110 (236)
T ss_pred             HHHHHHHhcccC----CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHH
Confidence            378888898877    4899999999987532   33566899999988775 6999998764211     11111111 


Q ss_pred             ----HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 ----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ----~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          .+.+.++.+  ++....++++.+||+|||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       111 ~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll--lDEP~~~LD~~~~  173 (236)
T cd03253         111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL--LDEATSALDTHTE  173 (236)
T ss_pred             HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence                122333444  44445567789999999999999999999999998  9999999998753

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.88  E-value=3.9e-22  Score=153.19  Aligned_cols=127  Identities=15%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEe-----cCccc-------ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLE-----VEKNL-------MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMD   74 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~-----i~~~~-------~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~   74 (156)
                      .|++++|+|+..    |++|+|+++|.+     +....       .++.++|++|++.  +++..++.+++.+...... 
T Consensus        43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~-  117 (253)
T TIGR02323        43 STLLGCLAGRLA----PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-  117 (253)
T ss_pred             HHHHHHHhCCCC----CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc-
Confidence            367888888876    489999999976     43211       1345899999974  3456788888764321110 


Q ss_pred             cCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         75 RNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                       ..........+.++++.+++. ...++.+.+||||||||++||+||+.+|+++|  +||||+|+|+.+.
T Consensus       118 -~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vll--lDEP~~~LD~~~~  184 (253)
T TIGR02323       118 -ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVF--MDEPTGGLDVSVQ  184 (253)
T ss_pred             -ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence             011112345678899999997 47789999999999999999999999999998  9999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.9e-22  Score=153.05  Aligned_cols=129  Identities=17%  Similarity=0.196  Sum_probs=98.1

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC-cHHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-HHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~   81 (156)
                      .|++++|+|+..+. -.+.+|+|.++|+++..     ...++.++|++|++.+++ .|+.||+.+.....   .. ....
T Consensus        47 STLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~---~~~~~~~  122 (261)
T PRK14258         47 STFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV---GWRPKLE  122 (261)
T ss_pred             HHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc---CCCcHHH
Confidence            47888999988751 00138999999998631     123566899999988877 89999997653221   11 1223


Q ss_pred             HHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.    +..++.+.+|||||+||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       123 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vll--LDEP~~~LD~~~~  186 (261)
T PRK14258        123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL--MDEPCFGLDPIAS  186 (261)
T ss_pred             HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            345677889999874    34688899999999999999999999999998  9999999998754

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.88  E-value=2.4e-22  Score=183.61  Aligned_cols=134  Identities=25%  Similarity=0.274  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc----CCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR----NLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~   82 (156)
                      .|++|+|+|+..+...|++|+|.++|.++...  ..++.++|++|++.+++.+||.|++.+....+.+.    .....+.
T Consensus       101 STLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~  180 (1394)
T TIGR00956       101 STLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY  180 (1394)
T ss_pred             HHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHH
Confidence            47899999997543346899999999987532  23556999999999999999999999876554221    1222222


Q ss_pred             H-HHHHHHHHHcCCCccccCc-----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 A-RTVDALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~-~~~~~~l~~~~L~~~~~~~-----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      . +.++++++.++|.+..|++     +++|||||||||+||++|+.+|++++  |||||+|||+.++.
T Consensus       181 ~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll--lDEPTsgLD~~~~~  246 (1394)
T TIGR00956       181 AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC--WDNATRGLDSATAL  246 (1394)
T ss_pred             HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE--EeCCCCCcCHHHHH
Confidence            2 2346789999998877665     46799999999999999999999888  99999999987543

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.88  E-value=6.3e-22  Score=149.83  Aligned_cols=116  Identities=17%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|+++|.++...         .....+++..|+.+|+.+....+   ........+++.+
T Consensus        62 STLl~~l~G~~~----p~~G~i~~~g~~~~~~---------~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~  125 (224)
T cd03220          62 STLLRLLAGIYP----PDSGTVTVRGRVSSLL---------GLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDE  125 (224)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEchhh---------cccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            367888888876    5899999999876311         11123346789999997764322   1223334456788


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEP~~gLD~~~  177 (224)
T cd03220         126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL--IDEVLAVGDAAF  177 (224)
T ss_pred             HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence            8999999988899999999999999999999999999888  999999999864

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.88  E-value=7.7e-23  Score=155.73  Aligned_cols=123  Identities=20%  Similarity=0.247  Sum_probs=89.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH-
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|++|++.+++ .|+.+++.+.....     ......+ 
T Consensus        43 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~  112 (238)
T cd03249          43 STVVSLLERFYD----PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEA  112 (238)
T ss_pred             HHHHHHHhccCC----CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHH
Confidence            367888888876    4899999999887431   23456999999987776 59999987542111     1111111 


Q ss_pred             ----HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 ----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ----~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          .+.+.++.+  ++....++.+.+||||||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       113 ~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~gLD~~~~  175 (238)
T cd03249         113 AKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILL--LDEATSALDAESE  175 (238)
T ss_pred             HHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence                122333333  45555677889999999999999999999999888  9999999997643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>KOG0059|consensus

Probab=99.88  E-value=1.2e-22  Score=179.09  Aligned_cols=137  Identities=27%  Similarity=0.442  Sum_probs=120.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      |.+++++|...|    ++|+++++|.++...    ..++.+||+||+..+.+.+|.+|++.++++.+   +...++.++.
T Consensus       606 T~f~mltG~~~~----t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~  678 (885)
T KOG0059|consen  606 TTFKMLTGETKP----TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSA  678 (885)
T ss_pred             hhHHHHhCCccC----CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHH
Confidence            667888888884    999999999998642    25778999999999999999999999998876   4455667778


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh----------------hheeecc
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS----------------ALFITTA  149 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~----------------~~~~~~~  149 (156)
                      ++.+++.+++.+..+++++.+|||+|+|+++|.|++.+|++++  ||||++|+||.+                ++.+|+|
T Consensus       679 v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~--LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSH  756 (885)
T KOG0059|consen  679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL--LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH  756 (885)
T ss_pred             HHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE--ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            9999999999999999999999999999999999999999998  999999999873                5667888


Q ss_pred             cccccc
Q psy16753        150 SSVEEE  155 (156)
Q Consensus       150 ~~~~~~  155 (156)
                      |-.|.|
T Consensus       757 sMeE~E  762 (885)
T KOG0059|consen  757 SMEEAE  762 (885)
T ss_pred             CHHHHH
Confidence            877766

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.9e-22  Score=155.62  Aligned_cols=133  Identities=19%  Similarity=0.217  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc--------
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD--------   74 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~--------   74 (156)
                      .|++++|+|+..+. ..|++|+|+++|.++...     ..++.++|++|++.+++ .|+.+|+.+.......        
T Consensus        85 STLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~  163 (305)
T PRK14264         85 STFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLAR  163 (305)
T ss_pred             HHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhccccccccccc
Confidence            37889999987531 125899999999987421     23467999999988777 4999999875432100        


Q ss_pred             -cCCc-HHHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         75 -RNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        75 -~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                       .... .....+.+.++++.+++.    +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++.
T Consensus       164 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLL--LDEPtsgLD~~~~~  237 (305)
T PRK14264        164 LLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVIL--MDEPASALDPIATS  237 (305)
T ss_pred             ccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence             0011 122345678889999874    45588899999999999999999999999998  99999999987553

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.87  E-value=7.8e-22  Score=169.25  Aligned_cols=128  Identities=21%  Similarity=0.202  Sum_probs=104.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .+++++|+|++.    |++|+|.++|+++....       .++.++|++|++.+++..|+.||+.+.....   ......
T Consensus        48 STLl~~i~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~  120 (648)
T PRK10535         48 STLMNILGCLDK----PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQ  120 (648)
T ss_pred             HHHHHHHhcCCC----CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            367888888876    58999999999876421       1456899999999999999999998654321   122334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ..+++.++++.+++.+..++++.+||+||+||+.|||||+.+|+++|  +||||+|+|+.++..
T Consensus       121 ~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLl--lDEP~~gLD~~s~~~  182 (648)
T PRK10535        121 RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL--ADEPTGALDSHSGEE  182 (648)
T ss_pred             HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHHHH
Confidence            45678899999999988999999999999999999999999999888  999999999875543

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=9.5e-22  Score=156.62  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=98.3

Q ss_pred             HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc-HHH
Q psy16753          9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~   81 (156)
                      .+++++|+|+..+. -.|++|+|.++|.++..     ...++.++|+||++.+++ .|+++|+.|.....   ... ...
T Consensus       122 STLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~  197 (329)
T PRK14257        122 STFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKI  197 (329)
T ss_pred             HHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHH
Confidence            36788888887531 01479999999999852     134567999999998875 69999998754321   111 112


Q ss_pred             HHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+.+.++++.+++.    ...+++..+||||||||++||||++.+|+++|  +||||+|+|+.+..
T Consensus       198 ~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlL--LDEPts~LD~~~~~  262 (329)
T PRK14257        198 LEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL--MDEPTSALDPIATA  262 (329)
T ss_pred             HHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence            233467788888873    34678899999999999999999999999988  99999999987543

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.7e-22  Score=174.30  Aligned_cols=117  Identities=17%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++|+|+|++.    |++|+|++||.++...   ..++.+||++|++.+|+. |++||+.++..          ...+++
T Consensus       494 TLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~----------~~~e~i  558 (686)
T TIGR03797       494 TLLRLLLGFET----PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP----------LTLDEA  558 (686)
T ss_pred             HHHHHHhCCCC----CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC----------CCHHHH
Confidence            56666666666    5899999999998642   467889999999998875 99999986421          112345


Q ss_pred             HHHHHHcCCCccc-------cCc----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCK-------NSV----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~-------~~~----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+..       |+.    ..+||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       559 ~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLi--LDEpTS~LD~~te  624 (686)
T TIGR03797       559 WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL--FDEATSALDNRTQ  624 (686)
T ss_pred             HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence            5667776664322       332    35799999999999999999999988  9999999998754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.87  E-value=1e-22  Score=175.07  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=90.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||+++|++++.+.+.|++|+|++||.|+...   ..|+.+|||+|++.+|.. |++||+.++....         ..+.+
T Consensus       510 sGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~---------~~e~i  579 (709)
T COG2274         510 SGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEA---------TDEEI  579 (709)
T ss_pred             CCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCC---------CHHHH
Confidence            5556666666655667999999999998643   568999999999998765 9999998653211         11233


Q ss_pred             HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++..+..           ........+||||||||++||||+.++|+++|  |||||+++|+.+..
T Consensus       580 ~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl--LDEaTSaLD~~sE~  646 (709)
T COG2274         580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL--LDEATSALDPETEA  646 (709)
T ss_pred             HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE--EeCcccccCHhHHH
Confidence            3444444332           22233346799999999999999999999988  99999999987543

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.87  E-value=1.5e-21  Score=149.73  Aligned_cols=131  Identities=17%  Similarity=0.142  Sum_probs=96.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccc-eeeEecCCCCCCCCCCHHHHHHHHHHhhcc----cCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVK-VSGFVPQHDLTVDTLTVHEHMTLMARLKMD----RNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~-~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~   80 (156)
                      .|++++|+|+..  ++|++|+|+++|.++...   ..++ .++|++|++.+++..++.+++.+.......    ......
T Consensus        47 STLl~~i~Gl~~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  124 (252)
T CHL00131         47 STLSKVIAGHPA--YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPL  124 (252)
T ss_pred             HHHHHHHcCCCc--CcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHH
Confidence            367888888731  226899999999987542   1122 478999999888989999998764322100    001112


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .....+.++++.+++. ...++.+. +|||||+||+.||+|++.+|+++|  +||||+|+|+.+.
T Consensus       125 ~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~  187 (252)
T CHL00131        125 EFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAI--LDETDSGLDIDAL  187 (252)
T ss_pred             HHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHHH
Confidence            2334677889999997 46788887 599999999999999999999998  9999999997744

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.87  E-value=4.5e-22  Score=149.75  Aligned_cols=119  Identities=16%  Similarity=0.103  Sum_probs=88.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++...       ..++.++|++|++.++ ..|+.+|+.+....      ..  
T Consensus        41 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~--  107 (218)
T cd03290          41 SSLLLAILGEMQ----TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK--  107 (218)
T ss_pred             HHHHHHHhccCC----CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH--
Confidence            367888888876    4899999999876421       1245689999998877 57999998754211      11  


Q ss_pred             HHHHHHHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                        +...++++.+++.+           ..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       108 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~~  177 (218)
T cd03290         108 --QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVF--LDDPFSALDIHLSD  177 (218)
T ss_pred             --HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEE--EeCCccccCHHHHH
Confidence              12234455555432           2356789999999999999999999999888  99999999988654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.87  E-value=8.1e-22  Score=162.33  Aligned_cols=128  Identities=21%  Similarity=0.153  Sum_probs=107.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-ccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~   83 (156)
                      .||+|+|+|.+.|    ++|+|+++|+.....    ....-|+.++|+..++|++||.||++++..... ....+.+...
T Consensus        48 STLmKiLsGv~~p----~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~  123 (500)
T COG1129          48 STLMKILSGVYPP----DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR  123 (500)
T ss_pred             HHHHHHHhCcccC----CCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHH
Confidence            4788999998885    899999999987532    223447899999999999999999976654332 1235677888


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++.++++.+++....+.++.+||.||||.|+||||++.+++++|  |||||+.|++..
T Consensus       124 ~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI--lDEPTaaLt~~E  180 (500)
T COG1129         124 RRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI--LDEPTAALTVKE  180 (500)
T ss_pred             HHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHH
Confidence            999999999999655899999999999999999999999999887  999999998664

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.87  E-value=2.8e-22  Score=151.00  Aligned_cols=117  Identities=20%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|+..    |++|+|.++|.++..   ..+++.++|++|++.+++ .|+.+|+.+...      ..    .+++
T Consensus        45 TLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~  109 (221)
T cd03244          45 SLLLALFRLVE----LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEEL  109 (221)
T ss_pred             HHHHHHHcCCC----CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHH
Confidence            67888888876    589999999998753   234567999999988765 599999853211      11    1234


Q ss_pred             HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++.+++.+.           .++.+.+||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       110 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll--lDEP~~~LD~~~~  175 (221)
T cd03244         110 WQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILV--LDEATASVDPETD  175 (221)
T ss_pred             HHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence            444555555433           356889999999999999999999999888  9999999998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.87  E-value=9.5e-22  Score=145.85  Aligned_cols=97  Identities=37%  Similarity=0.538  Sum_probs=80.8

Q ss_pred             HHHHHHHhhhh--hcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRV--VHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~--~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .+++++|+|++  .    |++|+|.++|.++.....++.++|++|++.+++..|+.+++.+....               
T Consensus        49 StLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------  109 (194)
T cd03213          49 STLLNALAGRRTGL----GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------  109 (194)
T ss_pred             HHHHHHHhCCCCCC----CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------
Confidence            36788888887  5    58999999999886534456799999999888889999998643210               


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .                 +||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       110 ~-----------------~LS~G~~qrv~laral~~~p~ill--lDEP~~~LD~~~~  147 (194)
T cd03213         110 R-----------------GLSGGERKRVSIALELVSNPSLLF--LDEPTSGLDSSSA  147 (194)
T ss_pred             c-----------------cCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcCCCHHHH
Confidence            0                 899999999999999999999888  9999999997743

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.86  E-value=3.7e-22  Score=169.17  Aligned_cols=119  Identities=24%  Similarity=0.305  Sum_probs=92.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.++|++|++.+|+. |++||+.++..     .    ...+.+
T Consensus       381 TL~~ll~g~~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~----~~~~~i  446 (574)
T PRK11160        381 TLLQLLTRAWD----PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----N----ASDEAL  446 (574)
T ss_pred             HHHHHHhcCCC----CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----c----cCHHHH
Confidence            55666666665    5899999999988642   457789999999998875 99999976421     1    123456


Q ss_pred             HHHHHHcCCCccccC----------ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKNS----------VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~----------~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+..++          ...+||||||||++||||++.+|+++|  +||||+++|+.+..
T Consensus       447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ili--lDE~ts~lD~~t~~  512 (574)
T PRK11160        447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL--LDEPTEGLDAETER  512 (574)
T ss_pred             HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence            777888888654332          446799999999999999999999988  99999999987543

>KOG0058|consensus

Probab=99.86  E-value=1.7e-22  Score=170.38  Aligned_cols=126  Identities=17%  Similarity=0.256  Sum_probs=93.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH---
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA---   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~---   83 (156)
                      +|+++++.++...|.|++|+|.+||.|+...   .+++++|+|.|+|.+|.. |+.|||.++...     ...++..   
T Consensus       505 sGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~-----~t~e~i~~AA  578 (716)
T KOG0058|consen  505 SGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDN-----ATDEEIEAAA  578 (716)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCC-----CCHHHHHHHH
Confidence            5677777777777778999999999998653   467899999999999876 999999987541     1111111   


Q ss_pred             --HHHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 --RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 --~~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                        ..+.+.+..+  |.+.....+-.+||||||||++|||||+.+|+++|  |||-|++||..+.
T Consensus       579 k~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI--LDEATSALDaeSE  640 (716)
T KOG0058|consen  579 KMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI--LDEATSALDAESE  640 (716)
T ss_pred             HHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE--EechhhhcchhhH
Confidence              1233344433  11223344446899999999999999999999887  9998888886643

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.86  E-value=2.2e-22  Score=174.13  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=88.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++|+|+|++.    |++|+|++||.++...   ..++.++|++|++.+|+. |++||+.++..     ..    ..+++
T Consensus       520 TLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~----~~~~i  585 (710)
T TIGR03796       520 TIAKLVAGLYQ----PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TI----PDADL  585 (710)
T ss_pred             HHHHHHhcCCC----CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CC----CHHHH
Confidence            56666777666    5899999999998642   467889999999998865 99999975421     11    12334


Q ss_pred             HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+           .......+||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       586 ~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili--LDEptS~LD~~te  651 (710)
T TIGR03796       586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI--LDEATSALDPETE  651 (710)
T ss_pred             HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE--EECccccCCHHHH
Confidence            45555555532           2223346799999999999999999999998  9999999998643

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.86  E-value=1.8e-21  Score=148.94  Aligned_cols=132  Identities=13%  Similarity=0.047  Sum_probs=92.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHH-hhccc---CCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKMDR---NLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~~~~---~~~~~   80 (156)
                      .|++++|+|++.  ++|++|+|.++|.++...   . .+..++|++|++.+++..+..+++.+... .....   .....
T Consensus        41 STLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (248)
T PRK09580         41 STLSATLAGRED--YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRF  118 (248)
T ss_pred             HHHHHHHcCCcc--CCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHH
Confidence            367888888852  115899999999887432   1 23458999999888777666555432211 10000   01111


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .....+.+.++.+++. ...++.+. +||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--LDEPt~~LD~~~~~  182 (248)
T PRK09580        119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI--LDESDSGLDIDALK  182 (248)
T ss_pred             HHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHHH
Confidence            2345677889999995 45566665 799999999999999999999998  99999999987543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.86  E-value=4.8e-22  Score=167.49  Aligned_cols=122  Identities=24%  Similarity=0.228  Sum_probs=90.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH---
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA---   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~---   83 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+|+. |++||+.+...     .....+..   
T Consensus       359 TL~~ll~g~~~----~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~  428 (544)
T TIGR01842       359 TLARLIVGIWP----PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAA  428 (544)
T ss_pred             HHHHHHhCCCC----CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHH
Confidence            56666777666    5899999999987542   456789999999998876 99999974321     11111111   


Q ss_pred             --HHHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 --RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 --~~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                        ..+.+.++.+  |++...+....+||||||||++||||++.+|+++|  +||||+|+|+.+.
T Consensus       429 ~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili--lDEpts~LD~~~~  490 (544)
T TIGR01842       429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV--LDEPNSNLDEEGE  490 (544)
T ss_pred             HHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccccCHHHH
Confidence              1233455555  55555566678899999999999999999999888  9999999997643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.86  E-value=2.3e-22  Score=170.45  Aligned_cols=119  Identities=18%  Similarity=0.255  Sum_probs=88.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.++|+||++.+|+. |+++|+.++..    ...    ..+++
T Consensus       384 TLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~----~~~~i  450 (582)
T PRK11176        384 TIANLLTRFYD----IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQY----SREQI  450 (582)
T ss_pred             HHHHHHHhccC----CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC----CCC----CHHHH
Confidence            56666666666    5899999999998642   457789999999998874 99999976421    001    12345


Q ss_pred             HHHHHHcCCCc-------cccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLK-------CKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~-------~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+       ..|+.+    .+||||||||++||||++++|+++|  +||||+++|+.+.
T Consensus       451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili--lDEptsaLD~~t~  516 (582)
T PRK11176        451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI--LDEATSALDTESE  516 (582)
T ss_pred             HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE--EECccccCCHHHH
Confidence            55566655432       223333    5699999999999999999999988  9999999998643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.9e-21  Score=149.47  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc-H
Q psy16753          9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-H   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~   79 (156)
                      .|++++|+|+..|.. .+++|+|.++|.++..       ...++.++|++|++.+++. |+.+|+.+.....   ... .
T Consensus        56 STLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~  131 (265)
T PRK14252         56 STFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRR  131 (265)
T ss_pred             HHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChH
Confidence            378889999876420 0279999999987531       1235668999999988876 9999997654321   111 1


Q ss_pred             HHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         80 VERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ....+.+.++++.+++.    +..++.+.+||+||+||+.||+|++.+|+++|  +||||+|+|+.+.
T Consensus       132 ~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~gLD~~~~  197 (265)
T PRK14252        132 SILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILL--FDEPTSALDPIAT  197 (265)
T ss_pred             HHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHH
Confidence            12335677788888763    45678899999999999999999999999988  9999999997743

>KOG0055|consensus

Probab=99.86  E-value=2e-22  Score=177.88  Aligned_cols=128  Identities=19%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH--
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR--   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--   84 (156)
                      ||++++.+++...+.|++|+|++||.++...   ..|.++|.|.|+|.+|. .|+.||+.++..-.     ...+..+  
T Consensus       390 sGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~da-----t~~~i~~a~  463 (1228)
T KOG0055|consen  390 SGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDA-----TREEIEEAA  463 (1228)
T ss_pred             CCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcc-----cHHHHHHHH
Confidence            7788888888887788999999999998653   45788999999998765 69999998764211     1111111  


Q ss_pred             ---HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         85 ---TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        85 ---~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                         .+.+.+..+  |.+......-.+||||||||++|||||+.+|++||  |||||++||+.+...
T Consensus       464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL--LDEaTSaLD~~se~~  527 (1228)
T KOG0055|consen  464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL--LDEATSALDAESERV  527 (1228)
T ss_pred             HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE--ecCcccccCHHHHHH
Confidence               112222222  12222233335699999999999999999999988  999999999887654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.86  E-value=5.5e-22  Score=168.53  Aligned_cols=118  Identities=19%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++..   ...++.++|+||++.+|++ |+++|+.++..      .    ..+++
T Consensus       382 TLl~lL~gl~~----p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~----~d~~i  446 (592)
T PRK10790        382 TLASLLMGYYP----LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------I----SEEQV  446 (592)
T ss_pred             HHHHHHhcccC----CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC------C----CHHHH
Confidence            56666666666    589999999998864   3567889999999999886 99999987521      1    12345


Q ss_pred             HHHHHHcCCCcc-------ccC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKC-------KNS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~-------~~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+.       .|.    ...+||||||||++|||||+.+|+++|  +||||+++|+.+..
T Consensus       447 ~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill--lDEpts~LD~~t~~  513 (592)
T PRK10790        447 WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI--LDEATANIDSGTEQ  513 (592)
T ss_pred             HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence            666666665432       233    335799999999999999999999888  99999999987543

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.86  E-value=8.2e-22  Score=153.49  Aligned_cols=117  Identities=17%  Similarity=0.212  Sum_probs=94.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .+++++|+|++.     ++|+|+++|.++...   ..++.++|+||++.+|+. |+++|+....      ...    .++
T Consensus        44 STLl~~L~gl~~-----~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~  107 (275)
T cd03289          44 STLLSAFLRLLN-----TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEE  107 (275)
T ss_pred             HHHHHHHhhhcC-----CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHH
Confidence            367888888875     489999999987532   346679999999998875 9999985321      011    235


Q ss_pred             HHHHHHHcCCCccccCccCc-----------CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~-----------LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+.++.+++.+..++++.+           ||+|||||++||||++.+|+++|  +||||+|+|+.+.
T Consensus       108 ~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill--lDEpts~LD~~~~  174 (275)
T cd03289         108 IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL--LDEPSAHLDPITY  174 (275)
T ss_pred             HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECccccCCHHHH
Confidence            66788899998777777766           99999999999999999999998  9999999998743

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.86  E-value=1.5e-21  Score=136.59  Aligned_cols=106  Identities=28%  Similarity=0.433  Sum_probs=88.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .+++++|+|...+    ++|+|.++|.++..   ...++.++|++|+..+++..|+.++                ...++
T Consensus        25 StLl~~l~g~~~~----~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~----------------~~~~~   84 (137)
T PF00005_consen   25 STLLKALAGLLPP----DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN----------------ESDER   84 (137)
T ss_dssp             HHHHHHHTTSSHE----SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH----------------HHHHH
T ss_pred             ccceeeecccccc----cccccccccccccccccccccccccccccccccccccccccc----------------ccccc
Confidence            3678888888885    89999999999875   2456779999999888899999988                12245


Q ss_pred             HHHHHHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCC
Q psy16753         86 VDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPR  136 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~  136 (156)
                      ++++++.+++.+..++.+    .+||+|||||++||+|++.+|+++|  +||||+
T Consensus        85 ~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~lll--lDEPt~  137 (137)
T PF00005_consen   85 IEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLL--LDEPTN  137 (137)
T ss_dssp             HHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEE--EESTTT
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEE--EeCCCC
Confidence            778888888876555555    9999999999999999999999998  999986

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.86  E-value=1.4e-21  Score=150.31  Aligned_cols=111  Identities=25%  Similarity=0.237  Sum_probs=87.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCC--CHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL--TVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|+..    |++|+|.++|.        ..++|+||++.+++.+  ++.+++.+.      ...    ..+++
T Consensus        44 STLl~~i~Gl~~----p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~  101 (251)
T PRK09544         44 STLVRVVLGLVA----PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDI  101 (251)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCc--------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHH
Confidence            367888888876    48999999872        3589999998766553  565554321      011    12456


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       102 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  156 (251)
T PRK09544        102 LPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV--LDEPTQGVDVNGQ  156 (251)
T ss_pred             HHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence            788999999988899999999999999999999999999888  9999999997754

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.86  E-value=4.9e-22  Score=166.81  Aligned_cols=119  Identities=23%  Similarity=0.242  Sum_probs=89.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++|+|+|++.    |++|+|.++|.++..   ...++.++|++|++.+|+. |++||+.++...     .    ..+++
T Consensus       363 TL~~ll~g~~~----~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~-----~----~~~~i  428 (529)
T TIGR02857       363 TLLNLLLGFVD----PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPD-----A----SDAEI  428 (529)
T ss_pred             HHHHHHhcCCC----CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCC-----C----CHHHH
Confidence            56666666666    589999999998864   2457789999999998864 999999764211     1    12345


Q ss_pred             HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++..++.+.           ......+||||||||++||||++.+|+++|  +||||+++|+.+..
T Consensus       429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili--lDE~ts~lD~~~~~  495 (529)
T TIGR02857       429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL--LDEPTAHLDAETEA  495 (529)
T ss_pred             HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHH
Confidence            566666665432           223346799999999999999999999998  99999999987544

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.86  E-value=1.9e-21  Score=141.72  Aligned_cols=90  Identities=27%  Similarity=0.387  Sum_probs=76.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .+++++|+|++.    |++|+|+++|.++...  ..++.++|+||++.+++..|+.+++.                    
T Consensus        40 StLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------   95 (173)
T cd03230          40 TTLIKIILGLLK----PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------   95 (173)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--------------------
Confidence            367888888876    4899999999987532  33567899999988888889988763                    


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                         ||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus        96 -------------------LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~  131 (173)
T cd03230          96 -------------------LSGGMKQRLALAQALLHDPELLI--LDEPTSGLDPESR  131 (173)
T ss_pred             -------------------cCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence                               99999999999999999999998  9999999997743

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.86  E-value=6.4e-21  Score=147.72  Aligned_cols=114  Identities=12%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.          +++++|...+.+.+|+.+|+.+.....   +.........+..
T Consensus        64 STLlk~L~Gl~~----p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~  126 (264)
T PRK13546         64 STLSNIIGGSLS----PTVGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPK  126 (264)
T ss_pred             HHHHHHHhCCcC----CCceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            378888888887    48999999985          235566665667789999987643322   1233344455678


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +++.+++.+..++++.+||+||+||++||+|++.+|+++|  |||||+|+|+.
T Consensus       127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLl--LDEPt~gLD~~  177 (264)
T PRK13546        127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV--IDEALSVGDQT  177 (264)
T ss_pred             HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEE--EeCccccCCHH
Confidence            8899999888899999999999999999999999999888  99999999985

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.86  E-value=5.6e-22  Score=167.77  Aligned_cols=125  Identities=22%  Similarity=0.260  Sum_probs=89.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-   85 (156)
                      ||+++|..++...++|++|+|.+||.++...   .+++.+++|||++.+|. -|+++|+.++...     ...++..+. 
T Consensus       366 sGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~-----at~eei~~a~  439 (567)
T COG1132         366 SGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD-----ATDEEIEEAL  439 (567)
T ss_pred             CCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC-----CCHHHHHHHH
Confidence            3444444444444446899999999998643   56888999999999988 6999999876421     111122222 


Q ss_pred             ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                          +.+.++.+  |++.........||||||||++||||++.+|+++|  |||||+++|+.+
T Consensus       440 k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI--LDEaTSalD~~t  500 (567)
T COG1132         440 KLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI--LDEATSALDTET  500 (567)
T ss_pred             HHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE--EeccccccCHHh
Confidence                22334443  33333344445799999999999999999999888  999999999875

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.86  E-value=5.1e-22  Score=171.94  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=88.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.+||.++...   ..++.++|++|++.+|+. |++||+.++...     ..    .+++
T Consensus       522 TLl~lL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~-----~~----~e~i  587 (711)
T TIGR00958       522 TVAALLQNLYQ----PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD-----TP----DEEI  587 (711)
T ss_pred             HHHHHHHhccC----CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC-----CC----HHHH
Confidence            56666666666    5899999999998642   456789999999998864 999999865311     11    2345


Q ss_pred             HHHHHHcCCCcc-------ccC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKC-------KNS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~-------~~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++..++.+.       .|+    ...+||||||||++||||++++|+++|  |||||+++|+.+
T Consensus       588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI--LDEpTSaLD~~t  652 (711)
T TIGR00958       588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI--LDEATSALDAEC  652 (711)
T ss_pred             HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EEccccccCHHH
Confidence            555666555322       233    345799999999999999999999988  999999999864

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.2e-21  Score=160.74  Aligned_cols=130  Identities=14%  Similarity=0.123  Sum_probs=95.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCC---CCCCCCCHHHHHHHHH-H-hhcccC-Cc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHD---LTVDTLTVHEHMTLMA-R-LKMDRN-LH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~-~-~~~~~~-~~   78 (156)
                      .|++++|+|+..    |++|+|+++|.++....    .++.++|+||+.   .+++.+++.++..+.. . ...... ..
T Consensus       288 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (491)
T PRK10982        288 TDIVETLFGIRE----KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLD  363 (491)
T ss_pred             HHHHHHHcCCCc----CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccC
Confidence            367788888776    58999999999875321    245589999985   3577888877632211 0 100001 11


Q ss_pred             HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .....+.+.++++.+++. +..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       364 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ill--LDEPt~gLD~~~~~  428 (491)
T PRK10982        364 NSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILM--LDEPTRGIDVGAKF  428 (491)
T ss_pred             cHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEE--EcCCCcccChhHHH
Confidence            223345678899999995 46799999999999999999999999999998  99999999987553

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.85  E-value=1e-21  Score=166.85  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=86.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++|+|+|++.    |++|+|+++|.++...   ..++.++|+||++.+|+. |+++|+.++..     ...    .+++
T Consensus       376 TLl~lL~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----d~~i  441 (588)
T PRK13657        376 TLINLLQRVFD----PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DAT----DEEM  441 (588)
T ss_pred             HHHHHHhcCcC----CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC-----CCC----HHHH
Confidence            56666666666    5899999999988642   457789999999998865 99999976421     111    1233


Q ss_pred             HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.           .........||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili--LDEpts~LD~~t~  507 (588)
T PRK13657        442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI--LDEATSALDVETE  507 (588)
T ss_pred             HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence            3444444432           22223345699999999999999999999998  9999999997643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.85  E-value=2.9e-21  Score=141.86  Aligned_cols=94  Identities=26%  Similarity=0.274  Sum_probs=77.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++...    ..++.++|++|++   .+++..|+.||+.+...           
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------  104 (182)
T cd03215          40 TELAEALFGLRP----PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------  104 (182)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------
Confidence            367888888877    4899999999987542    2356799999985   46778899999864310           


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                              ||+|||||++||+|++.+|+++|  +||||+|+|+.++
T Consensus       105 ------------------------LS~G~~qrl~la~al~~~p~lll--lDEP~~~LD~~~~  140 (182)
T cd03215         105 ------------------------LSGGNQQKVVLARWLARDPRVLI--LDEPTRGVDVGAK  140 (182)
T ss_pred             ------------------------cCHHHHHHHHHHHHHccCCCEEE--ECCCCcCCCHHHH
Confidence                                    99999999999999999999988  9999999998743

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=1.4e-21  Score=162.87  Aligned_cols=118  Identities=15%  Similarity=0.092  Sum_probs=91.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCC--C-C-----CCCHHHHHHHHHHhhcccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLT--V-D-----TLTVHEHMTLMARLKMDRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~--~-~-----~ltv~e~l~~~~~~~~~~~~   77 (156)
                      .|++|+|+|++.    |++|+|.++|.++...   ..++.++|++|++..  + +     .+++.+++.+.         
T Consensus        43 STLl~~l~G~~~----p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------  109 (490)
T PRK10938         43 SALARALAGELP----LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------  109 (490)
T ss_pred             HHHHHHHhccCC----CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc---------
Confidence            378888888877    4899999999776421   223458999998542  1 1     34565554321         


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                        ....+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       110 --~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~  171 (490)
T PRK10938        110 --VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI--LDEPFDGLDVASR  171 (490)
T ss_pred             --hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHHH
Confidence              1234567889999999888899999999999999999999999999988  9999999998744

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.85  E-value=6.1e-22  Score=171.30  Aligned_cols=119  Identities=21%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|+++|.++..   ..+++.+||++|++.+|+. |++||+.++...    ..+    .+++
T Consensus       515 TLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~----~~~i  581 (708)
T TIGR01193       515 TLAKLLVGFFQ----ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVS----QDEI  581 (708)
T ss_pred             HHHHHHhccCC----CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC----CCC----HHHH
Confidence            56666666666    589999999998754   3567889999999998876 999999865211    111    2234


Q ss_pred             HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.           ........+||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili--LDE~Ts~LD~~te  647 (708)
T TIGR01193       582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI--LDESTSNLDTITE  647 (708)
T ss_pred             HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE--EeCccccCCHHHH
Confidence            4555555442           22233346799999999999999999999988  9999999997743

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.85  E-value=9.1e-22  Score=169.92  Aligned_cols=118  Identities=22%  Similarity=0.244  Sum_probs=88.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++|+|+|++.    |++|+|.++|.++...   ..++.++||+|++.+|+. |++||+.++..     ..    ..+++
T Consensus       506 TLlklL~gl~~----p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~----~~~~i  571 (694)
T TIGR03375       506 TLLKLLLGLYQ----PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YA----DDEEI  571 (694)
T ss_pred             HHHHHHhcCCC----CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CC----CHHHH
Confidence            55666666666    5899999999998642   467889999999998875 99999976421     11    12344


Q ss_pred             HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+           .......+||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili--LDE~Ts~LD~~te  637 (694)
T TIGR03375       572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL--LDEPTSAMDNRSE  637 (694)
T ss_pred             HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence            55555555532           2233346799999999999999999999988  9999999998643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.85  E-value=1e-21  Score=166.30  Aligned_cols=118  Identities=21%  Similarity=0.244  Sum_probs=88.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.++|+||++.+|+. |++||+.++..     ...    .+++
T Consensus       381 TLlklL~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~  446 (576)
T TIGR02204       381 TLFQLLLRFYD----PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEV  446 (576)
T ss_pred             HHHHHHHhccC----CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHH
Confidence            66777777776    5899999999988642   456779999999998765 99999976421     111    1234


Q ss_pred             HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.           .........||||||||++||||++.+|+++|  +||||+++|+.+.
T Consensus       447 ~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili--lDEpts~lD~~~~  512 (576)
T TIGR02204       447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL--LDEATSALDAESE  512 (576)
T ss_pred             HHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE--EeCcccccCHHHH
Confidence            4455555443           22233446799999999999999999999888  9999999998754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.85  E-value=2.9e-21  Score=144.31  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=85.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .+++++|+|+..    |++|+|.++|.++...   ..++.++|++|++.+++ .|+.+|+.+..      ....    +.
T Consensus        48 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~  112 (207)
T cd03369          48 STLILALFRFLE----AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EE  112 (207)
T ss_pred             HHHHHHHhcccC----CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HH
Confidence            367888888877    4899999999987432   23567999999998776 49999985421      1111    12


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+.++       .++++.+||+||+||++||||++.+|+++|  +||||+|+|+.+.
T Consensus       113 ~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~  161 (207)
T cd03369         113 IYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLV--LDEATASIDYATD  161 (207)
T ss_pred             HHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEE--EeCCcccCCHHHH
Confidence            333333       356789999999999999999999999988  9999999998743

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.85  E-value=4.2e-21  Score=153.52  Aligned_cols=127  Identities=23%  Similarity=0.253  Sum_probs=100.8

Q ss_pred             HHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753         13 HLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus        13 ~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      ..|.+++.     .+|+|.|+|+++...      ..|+.+..|||++.  +.|.+||.+.+..+...+.+ ..+..+..+
T Consensus       331 ~allrL~~-----s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~  404 (534)
T COG4172         331 LALLRLIP-----SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQ  404 (534)
T ss_pred             HHHHhhcC-----cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHH
Confidence            45556655     369999999998632      34677899999974  56899999998887766532 346667778


Q ss_pred             HHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheeecccccc
Q psy16753         85 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVE  153 (156)
Q Consensus        85 ~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~~~~~~~  153 (156)
                      ++.++++.+|+++ ..+++++++|||||||++||||++.+|++++  |||||+      +++.++|.||-
T Consensus       405 rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~--LDEPTS------ALD~SVQaQvv  466 (534)
T COG4172         405 RVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELIL--LDEPTS------ALDRSVQAQVL  466 (534)
T ss_pred             HHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEE--ecCCch------HhhHHHHHHHH
Confidence            8999999999975 4699999999999999999999999999998  999555      55555666553

>PRK13409 putative ATPase RIL; Provisional

Probab=99.85  E-value=4e-21  Score=163.13  Aligned_cols=113  Identities=21%  Similarity=0.144  Sum_probs=92.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++          ..++|+||+...++..|+.+++.+....     ..   ....+.+
T Consensus       379 STLlk~L~Gl~~----p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~  436 (590)
T PRK13409        379 TTFAKLLAGVLK----PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSE  436 (590)
T ss_pred             HHHHHHHhCCCC----CCceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHH
Confidence            367888888876    589999985          1489999998878889999998764211     11   1124678


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      +++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.++..
T Consensus       437 ~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL--LDEPt~~LD~~~~~~  491 (590)
T PRK13409        437 IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL--LDEPSAHLDVEQRLA  491 (590)
T ss_pred             HHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHHHH
Confidence            8999999988899999999999999999999999999998  999999999775443

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.85  E-value=1.2e-21  Score=165.63  Aligned_cols=121  Identities=18%  Similarity=0.213  Sum_probs=91.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.|    ++|+|+++|.++...   ..++.++|+||++.+|+. |++||+.++..    ..    ...++
T Consensus       372 STLl~lL~gl~~~----~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~----~~~~~  438 (571)
T TIGR02203       372 STLVNLIPRFYEP----DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQ----ADRAE  438 (571)
T ss_pred             HHHHHHHHhccCC----CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CC----CCHHH
Confidence            3678888888875    899999999987542   456779999999998865 99999975421    01    12234


Q ss_pred             HHHHHHHcCCCcc-------ccCc----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLLKC-------KNSV----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~~~-------~~~~----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++.+.       .|..    -..||||||||++||||++.+|+++|  |||||+++|+.+..
T Consensus       439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill--LDEpts~LD~~~~~  506 (571)
T TIGR02203       439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI--LDEATSALDNESER  506 (571)
T ss_pred             HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHHH
Confidence            5566666665432       2333    34699999999999999999999998  99999999987544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.85  E-value=1.2e-21  Score=169.21  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++|+|+|++.    |++|+|+++|.++...   ..++.++|++|++.+|+. |++||+.++..     ...    .+.+
T Consensus       498 TL~~ll~g~~~----p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~----~~~i  563 (694)
T TIGR01846       498 TLTKLLQRLYT----PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAP----FEHV  563 (694)
T ss_pred             HHHHHHhcCCC----CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCC----HHHH
Confidence            56677777766    5899999999998642   457789999999988864 99999975321     111    1223


Q ss_pred             HHHHHHcC-----------CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~-----------L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..+           ++........+||||||||++||||++.+|+++|  |||||+|+|+.+.
T Consensus       564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili--lDEpts~LD~~~~  629 (694)
T TIGR01846       564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI--FDEATSALDYESE  629 (694)
T ss_pred             HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EECCCcCCCHHHH
Confidence            33344433           3333444557899999999999999999999988  9999999998743

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=2.2e-21  Score=177.53  Aligned_cols=133  Identities=26%  Similarity=0.359  Sum_probs=102.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccC-------CcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-------LHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~   81 (156)
                      .|++|+|+|++.+.. ..+|+|.++|.++.....++.++|++|++.+++.+||+|++.|+...+....       ....+
T Consensus       205 STLLk~LaG~l~~~~-~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~e  283 (1470)
T PLN03140        205 TTLLLALAGKLDPSL-KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARRE  283 (1470)
T ss_pred             HHHHHHHhCCCCCCC-cceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHH
Confidence            378999999987511 1389999999988654346679999999999999999999998765432110       00100


Q ss_pred             ------------------------HHHHHHHHHHHcCCCccc-----cCccCcCChHHHHHHHHHHHHhcCCCeeEEecC
Q psy16753         82 ------------------------RARTVDALLKELGLLKCK-----NSVLNVLSGGERKRVALAVQVSQDCSRVVKITD  132 (156)
Q Consensus        82 ------------------------~~~~~~~~l~~~~L~~~~-----~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~D  132 (156)
                                              ....++++++.+||+++.     |+.++++||||||||+||++++.+|++++  +|
T Consensus       284 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vll--lD  361 (1470)
T PLN03140        284 KDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF--MD  361 (1470)
T ss_pred             HhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEE--Ee
Confidence                                    012356789999998755     55678999999999999999999999988  99


Q ss_pred             CCCCCCCchhhh
Q psy16753        133 SQPRGKWPISAL  144 (156)
Q Consensus       133 ep~~g~~~~~~~  144 (156)
                      |||+|||+.++.
T Consensus       362 EPTsGLDs~t~~  373 (1470)
T PLN03140        362 EISTGLDSSTTY  373 (1470)
T ss_pred             CCCcCccHHHHH
Confidence            999999977543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.85  E-value=1.5e-21  Score=150.48  Aligned_cols=127  Identities=17%  Similarity=0.152  Sum_probs=90.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|+++|.++...   ..++.++|++|++.+++ .|+.+|+....... ............
T Consensus        61 STLl~~l~Gl~~----~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~l~~~~  134 (257)
T cd03288          61 SSLSLAFFRMVD----IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCT-DDRLWEALEIAQ  134 (257)
T ss_pred             HHHHHHHHcccC----CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCC-HHHHHHHHHHhC
Confidence            367888888876    5899999999987532   33567899999988776 48888874221000 000000000112


Q ss_pred             HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+.++.+  +++...+..+.+||+||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       135 l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~gLD~~~~  192 (257)
T cd03288         135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILI--MDEATASIDMATE  192 (257)
T ss_pred             cHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence            33455555  56666677788999999999999999999999888  9999999998754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.85  E-value=4.4e-21  Score=141.99  Aligned_cols=97  Identities=27%  Similarity=0.391  Sum_probs=79.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+...  +|++|+|.++|.++. ...++.++|++|++.+++..|+.+|+.+....                 
T Consensus        47 STLl~~l~G~~~~--~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------  106 (192)
T cd03232          47 TTLLDVLAGRKTA--GVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-----------------  106 (192)
T ss_pred             HHHHHHHhCCCcC--CCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-----------------
Confidence            4788899987531  258999999999875 33356789999998888889999998753210                 


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                        +             +|||||+||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       107 --~-------------~LSgGe~qrv~la~al~~~p~vll--lDEP~~~LD~~~  143 (192)
T cd03232         107 --R-------------GLSVEQRKRLTIGVELAAKPSILF--LDEPTSGLDSQA  143 (192)
T ss_pred             --h-------------cCCHHHhHHHHHHHHHhcCCcEEE--EeCCCcCCCHHH
Confidence              0             899999999999999999999888  999999999763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=2.2e-21  Score=161.60  Aligned_cols=130  Identities=13%  Similarity=0.075  Sum_probs=93.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCC--CCCHHHHHHHHHHhh-cccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVD--TLTVHEHMTLMARLK-MDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~--~ltv~e~l~~~~~~~-~~~~~~~~~   81 (156)
                      .|++++|+|+..+   +++|+|+++|.++...    ..++.++|++|++.++.  ..++.+++.+..... .........
T Consensus       300 STLl~~l~G~~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (490)
T PRK10938        300 STLLSLITGDHPQ---GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR  376 (490)
T ss_pred             HHHHHHHcCCCCc---ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH
Confidence            3788888886532   2699999999875321    23456899999865533  346666554321100 000011122


Q ss_pred             HHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..++++++++.+++.+ ..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       377 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll--LDEPt~gLD~~~~  437 (490)
T PRK10938        377 QQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLI--LDEPLQGLDPLNR  437 (490)
T ss_pred             HHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHHHH
Confidence            3456889999999987 7899999999999999999999999999988  9999999997643

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.85  E-value=3.6e-21  Score=140.29  Aligned_cols=88  Identities=22%  Similarity=0.288  Sum_probs=74.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .+++++|+|++.    |++|+|.++|.++...   ..++.++|++|++.+++. |+.+|+                    
T Consensus        42 StLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l--------------------   96 (173)
T cd03246          42 STLARLILGLLR----PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI--------------------   96 (173)
T ss_pred             HHHHHHHHhccC----CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC--------------------
Confidence            368888888877    4899999999987532   335678999999877764 888775                    


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                          ||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus        97 --------------------LS~G~~qrv~la~al~~~p~~ll--lDEPt~~LD~~~~  132 (173)
T cd03246          97 --------------------LSGGQRQRLGLARALYGNPRILV--LDEPNSHLDVEGE  132 (173)
T ss_pred             --------------------cCHHHHHHHHHHHHHhcCCCEEE--EECCccccCHHHH
Confidence                                99999999999999999999888  9999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.85  E-value=2.9e-21  Score=141.34  Aligned_cols=91  Identities=27%  Similarity=0.315  Sum_probs=76.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++++|+|++.    |++|+|.++|.++...     ..++.++|++|++.+++..|+.+++.+.               
T Consensus        40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~---------------  100 (178)
T cd03229          40 STLLRCIAGLEE----PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG---------------  100 (178)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec---------------
Confidence            367888888876    4899999999987532     3356799999998888888998876421               


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                                            ||+|||||++||+|++.+|+++|  +||||+|+|+.+
T Consensus       101 ----------------------lS~G~~qr~~la~al~~~p~lli--lDEP~~~LD~~~  135 (178)
T cd03229         101 ----------------------LSGGQQQRVALARALAMDPDVLL--LDEPTSALDPIT  135 (178)
T ss_pred             ----------------------CCHHHHHHHHHHHHHHCCCCEEE--EeCCcccCCHHH
Confidence                                  99999999999999999999998  999999999774

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=4.2e-21  Score=139.69  Aligned_cols=122  Identities=17%  Similarity=0.152  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc--ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL--MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~--~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|+..|    ++|+|+|+|..+....  ..+.+-|+--.+.+-+.+|+.||+.|...++..      .....+
T Consensus        42 TtLLRilaGLl~p----~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i  111 (209)
T COG4133          42 TTLLRILAGLLRP----DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATI  111 (209)
T ss_pred             HHHHHHHHcccCC----CCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhH
Confidence            4789999999995    7999999999886542  345566776666677889999999998776532      123457


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++.+||....|.++++||.|||+||+|||-++..++++|  ||||++++|+-.
T Consensus       112 ~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWi--LDEP~taLDk~g  165 (209)
T COG4133         112 WEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWI--LDEPFTALDKEG  165 (209)
T ss_pred             HHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCcee--ecCcccccCHHH
Confidence            788999999999999999999999999999999999999998  999999999763

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.84  E-value=3.8e-21  Score=143.38  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=82.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|+..    |++|+|.++|          .++|++|++.++ ..|+.+|+.+....      ..    +...+
T Consensus        45 STLl~~i~G~~~----~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~----~~~~~   99 (204)
T cd03250          45 SSLLSALLGELE----KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIRENILFGKPF------DE----ERYEK   99 (204)
T ss_pred             HHHHHHHhCcCC----CCCCeEEEcC----------EEEEEecCchhc-cCcHHHHhccCCCc------CH----HHHHH
Confidence            367888888877    4899999999          489999999877 46999999764211      11    11222


Q ss_pred             HHHHc-----------CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKEL-----------GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~-----------~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++.+           ++....++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.++.
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~~  164 (204)
T cd03250         100 VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYL--LDDPLSAVDAHVGR  164 (204)
T ss_pred             HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHHH
Confidence            22232           23334566788999999999999999999999998  99999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.84  E-value=2.6e-21  Score=164.37  Aligned_cols=123  Identities=22%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-   85 (156)
                      |++++|+|++.    |++|+|.++|.++..   ...++.++|++|++.+++ .|++||+.++..     .....+..+. 
T Consensus       376 TL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~a~  445 (585)
T TIGR01192       376 TLINLLQRVYD----PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGRE-----GATDEEVYEAA  445 (585)
T ss_pred             HHHHHHccCCC----CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCC-----CCCHHHHHHHH
Confidence            56677777766    589999999998754   245678999999998876 599999976421     1111111111 


Q ss_pred             ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                          +.+.+..+  |++...+.....||||||||++|||||+.+|+++|  +||||+|+|+.+..
T Consensus       446 ~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili--lDEpts~LD~~~~~  508 (585)
T TIGR01192       446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV--LDEATSALDVETEA  508 (585)
T ss_pred             HHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCccCCCHHHHH
Confidence                11222222  34444556677899999999999999999999988  99999999987543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.84  E-value=5.4e-21  Score=152.88  Aligned_cols=118  Identities=24%  Similarity=0.364  Sum_probs=93.9

Q ss_pred             cceEEEECCEecCcc-------cccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCC
Q psy16753         26 VDGQILLNGLEVEKN-------LMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL   96 (156)
Q Consensus        26 ~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~   96 (156)
                      -+|.|.|+|.++-..       .....|+++||++..  -|-.|+...+....++|  .+......+.++.++++.+|+.
T Consensus        68 ~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~  145 (534)
T COG4172          68 PSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIP  145 (534)
T ss_pred             ccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCC
Confidence            579999999997432       123568999999864  45667888777666555  3556777888999999999996


Q ss_pred             c---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheeecccccc
Q psy16753         97 K---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVE  153 (156)
Q Consensus        97 ~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~~~~~~~  153 (156)
                      +   ..+.++++|||||||||+||+||+.+|+++|  .||      |+++++||+|.||.
T Consensus       146 ~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI--ADE------PTTALDVtvQaQIL  197 (534)
T COG4172         146 EPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI--ADE------PTTALDVTVQAQIL  197 (534)
T ss_pred             chhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe--ecC------CcchhhhhhHHHHH
Confidence            3   4689999999999999999999999999887  999      55566677777765

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.84  E-value=2.4e-21  Score=164.12  Aligned_cols=118  Identities=14%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++..   ..+++.++|++|++.+|+. |++||+.++..     ...    .+.+
T Consensus       356 TLl~ll~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~~  421 (569)
T PRK10789        356 TLLSLIQRHFD----VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DAT----QQEI  421 (569)
T ss_pred             HHHHHHhcccC----CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCC----HHHH
Confidence            56677777766    589999999998754   2456789999999998875 99999976421     111    1233


Q ss_pred             HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++           +...+....+||||||||++||||++.+|+++|  +||||+|+|+.+.
T Consensus       422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill--lDEpts~LD~~~~  487 (569)
T PRK10789        422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI--LDDALSAVDGRTE  487 (569)
T ss_pred             HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EECccccCCHHHH
Confidence            344444443           223344456899999999999999999999998  9999999998753

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.84  E-value=1.8e-20  Score=155.85  Aligned_cols=115  Identities=14%  Similarity=0.093  Sum_probs=89.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.+..       +++   ...+++.+|+.+++.+.....   ........+++.+
T Consensus        64 STLLkiLaGLl~----P~sGeI~I~G~~~~-------i~~---~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~e  126 (549)
T PRK13545         64 STLSNLIAGVTM----PNKGTVDIKGSAAL-------IAI---SSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPE  126 (549)
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEeee-------EEe---ccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHH
Confidence            378888888877    48999999997521       122   233456789999987644322   1223344456778


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.+
T Consensus       127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL--LDEPTsgLD~~s  178 (549)
T PRK13545        127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV--IDEALSVGDQTF  178 (549)
T ss_pred             HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHH
Confidence            9999999988899999999999999999999999999988  999999999874

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=158.45  Aligned_cols=113  Identities=19%  Similarity=0.169  Sum_probs=90.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|+..    |++|+|.++|.        ..+||++|++.  +++..|+.+++.+..  .  ..    ...+++
T Consensus       359 STLl~~i~G~~~----p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~--~--~~----~~~~~~  418 (530)
T PRK15064        359 TTLLRTLVGELE----PDSGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR--Q--EG----DDEQAV  418 (530)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc--c--CC----ccHHHH
Confidence            367888888876    58999999873        35899999864  456789999875321  0  00    123467


Q ss_pred             HHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++. +..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll--LDEPt~~LD~~~~  474 (530)
T PRK15064        419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV--MDEPTNHMDMESI  474 (530)
T ss_pred             HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence            8899999994 67899999999999999999999999999988  9999999998865

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.84  E-value=2.3e-21  Score=177.58  Aligned_cols=107  Identities=18%  Similarity=0.270  Sum_probs=81.5

Q ss_pred             cceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCC-------
Q psy16753         26 VDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-------   95 (156)
Q Consensus        26 ~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------   95 (156)
                      ++|+|+++|.++..   ..+|+.+|||+|++.+|+ .|++||+.++..     ...    .+.+.++++..++       
T Consensus      1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~at----~eeI~~A~k~A~l~~fI~~L 1344 (1466)
T PTZ00265       1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----DAT----REDVKRACKFAAIDEFIESL 1344 (1466)
T ss_pred             CCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhC
Confidence            69999999999864   356788999999999986 599999987632     111    1234455555444       


Q ss_pred             CccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         96 LKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        96 ~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++..|+.+    ..||||||||++|||||+.+|++||  |||||++||+.+..
T Consensus      1345 P~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILL--LDEaTSaLD~~sE~ 1395 (1466)
T PTZ00265       1345 PNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILL--LDEATSSLDSNSEK 1395 (1466)
T ss_pred             ccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHH
Confidence            22334444    5699999999999999999999988  99999999977543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.84  E-value=1.9e-20  Score=158.34  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=92.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHH-hh-----cc-----cCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LK-----MD-----RNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~-----~~-----~~~   77 (156)
                      .|++++|+|++.    |++|+|.+++.        ..+||++|++.+++.+|+.+++.+... ..     ..     ...
T Consensus        47 STLlk~i~G~~~----p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~  114 (556)
T PRK11819         47 STLLRIMAGVDK----EFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAE  114 (556)
T ss_pred             HHHHHHHhCCCC----CCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence            367888888876    48999998642        358999999988889999999976421 10     00     000


Q ss_pred             cH----------------------HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753         78 HH----------------------VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP  135 (156)
Q Consensus        78 ~~----------------------~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~  135 (156)
                      ..                      ....+++.++++.+++.. .++++.+|||||||||+||+|++.+|+++|  |||||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlL--LDEPt  191 (556)
T PRK11819        115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLL--LDEPT  191 (556)
T ss_pred             CchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEE--EcCCC
Confidence            00                      011346778899999964 789999999999999999999999999888  99999


Q ss_pred             CCCCchhhh
Q psy16753        136 RGKWPISAL  144 (156)
Q Consensus       136 ~g~~~~~~~  144 (156)
                      +|+|+.+..
T Consensus       192 ~~LD~~~~~  200 (556)
T PRK11819        192 NHLDAESVA  200 (556)
T ss_pred             CcCChHHHH
Confidence            999987543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.9e-20  Score=157.40  Aligned_cols=122  Identities=15%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHH-hhc---------c-cC-
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKM---------D-RN-   76 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~~---------~-~~-   76 (156)
                      .|++++|+|++.    |++|+|.++|.        ..+||++|++.+++.+|+.+++.+... .+.         . .. 
T Consensus        41 STLl~~l~Gl~~----p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~  108 (530)
T PRK15064         41 STFMKILGGDLE----PSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEM  108 (530)
T ss_pred             HHHHHHHhCCCC----CCCceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhccccc
Confidence            367888888776    48999999873        248999999888889999999875421 000         0 00 


Q ss_pred             -----------------CcHHHHHHHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCC
Q psy16753         77 -----------------LHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGK  138 (156)
Q Consensus        77 -----------------~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~  138 (156)
                                       .......+++.++++.+++.+.. ++++.+||||||||++||+||+.+|+++|  |||||+|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLl--LDEPt~~L  186 (530)
T PRK15064        109 SEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILL--LDEPTNNL  186 (530)
T ss_pred             ccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCccc
Confidence                             00011235678899999997643 57889999999999999999999999888  99999999


Q ss_pred             Cchhhh
Q psy16753        139 WPISAL  144 (156)
Q Consensus       139 ~~~~~~  144 (156)
                      |+.+..
T Consensus       187 D~~~~~  192 (530)
T PRK15064        187 DINTIR  192 (530)
T ss_pred             CHHHHH
Confidence            987553

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.84  E-value=5.6e-21  Score=139.80  Aligned_cols=91  Identities=29%  Similarity=0.390  Sum_probs=75.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|+..|    ++|+|.++|.++..  ...++.++|++|++.+++ .|+.+|+                     
T Consensus        42 StLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i---------------------   95 (178)
T cd03247          42 STLLQLLTGDLKP----QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL---------------------   95 (178)
T ss_pred             HHHHHHHhccCCC----CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh---------------------
Confidence            3688888898774    89999999998643  233566899999887664 5777765                     


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                      +.+||+||+||++||||++.+|+++|  +||||+|+|+.+.
T Consensus        96 ----------------~~~LS~G~~qrv~laral~~~p~~ll--lDEP~~~LD~~~~  134 (178)
T cd03247          96 ----------------GRRFSGGERQRLALARILLQDAPIVL--LDEPTVGLDPITE  134 (178)
T ss_pred             ----------------cccCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence                            67899999999999999999999988  9999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.83  E-value=8.6e-21  Score=140.89  Aligned_cols=131  Identities=24%  Similarity=0.345  Sum_probs=99.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCccc---ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHH---H
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL---MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHV---E   81 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~---~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~---~   81 (156)
                      |++++|+|.+.    |++|+|.++|.++++..   .+..++-|||++.  .++.+|+.||+..+..-...+++...   .
T Consensus        47 Tlln~iaG~l~----~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~  122 (263)
T COG1101          47 TLLNAIAGDLK----PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNER  122 (263)
T ss_pred             HHHHHhhCccc----cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHH
Confidence            56666666666    59999999999998753   3345678999974  58999999999876543211222221   2


Q ss_pred             HHHHHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         82 RARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        82 ~~~~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ..+...+-++.+  |+++.+++++.-|||||||-+++++|.++.|++++  |||=|+.+||-++.+|
T Consensus       123 ~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLL--LDEHTAALDPkta~~v  187 (263)
T COG1101         123 RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL--LDEHTAALDPKTAEFV  187 (263)
T ss_pred             HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEE--ecchhhcCCcchHHHH
Confidence            223345556665  44788899999999999999999999999999998  9999999999866554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.83  E-value=2.7e-20  Score=157.23  Aligned_cols=121  Identities=19%  Similarity=0.133  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh-hc-----------ccC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KM-----------DRN   76 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~~-----------~~~   76 (156)
                      .|++++|+|++.    |++|+|.+++        ...+||++|++.+++.+|+.+++.+.... ..           ...
T Consensus        45 STLl~~i~G~~~----p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~  112 (552)
T TIGR03719        45 STLLRIMAGVDK----EFNGEARPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE  112 (552)
T ss_pred             HHHHHHHhCCCC----CCCceEEecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence            367888888876    4899999875        23589999999888899999999764211 00           000


Q ss_pred             CcHH---------------------HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753         77 LHHV---------------------ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP  135 (156)
Q Consensus        77 ~~~~---------------------~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~  135 (156)
                      ....                     ....++.++++.+++.. .++++.+||||||||++||+||+.+|+++|  |||||
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLL--LDEPt  189 (552)
T TIGR03719       113 PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLL--LDEPT  189 (552)
T ss_pred             CchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCC
Confidence            0000                     01235667888888854 688999999999999999999999999888  99999


Q ss_pred             CCCCchhhh
Q psy16753        136 RGKWPISAL  144 (156)
Q Consensus       136 ~g~~~~~~~  144 (156)
                      +|+|+.++.
T Consensus       190 ~~LD~~~~~  198 (552)
T TIGR03719       190 NHLDAESVA  198 (552)
T ss_pred             CCCChHHHH
Confidence            999988654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.83  E-value=3.6e-21  Score=141.12  Aligned_cols=92  Identities=28%  Similarity=0.360  Sum_probs=74.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|+++|.++...   .++..++|+||                                  
T Consensus        39 StLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q----------------------------------   80 (180)
T cd03214          39 STLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQ----------------------------------   80 (180)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHH----------------------------------
Confidence            367888888876    5899999999987532   12334566665                                  


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                         +++.+++.+..++.+.+||+||+||++||||++.+|+++|  +||||+|+|+.+.
T Consensus        81 ---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEP~~~LD~~~~  133 (180)
T cd03214          81 ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILL--LDEPTSHLDIAHQ  133 (180)
T ss_pred             ---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence               5677788777778899999999999999999999999998  9999999997653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.83  E-value=1.9e-20  Score=158.34  Aligned_cols=116  Identities=18%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|++++ +.       .+||+||+. .+++.+|+.+++.+.....   .....  ....+
T Consensus       364 STLl~~i~G~~~----p~~G~i~~~~-~~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~  426 (556)
T PRK11819        364 STLFKMITGQEQ----PDSGTIKIGE-TV-------KLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR--EIPSR  426 (556)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECC-ce-------EEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc--HHHHH
Confidence            367888888876    5899999854 21       489999986 6778899999997653221   11111  12345


Q ss_pred             HHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.. ..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus       427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~  481 (556)
T PRK11819        427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL--LDEPTNDLDVETL  481 (556)
T ss_pred             HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence            7899999964 5689999999999999999999999999998  9999999997754

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=6e-21  Score=158.10  Aligned_cols=117  Identities=24%  Similarity=0.300  Sum_probs=92.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|+..    |++|+|.+||.+..+   ..|++++++++|++.+|++ |++||+.++...         ...+.+
T Consensus       362 TLl~lL~G~~~----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~---------~s~e~i  427 (559)
T COG4988         362 TLLNLLLGFLA----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD---------ASDEEI  427 (559)
T ss_pred             HHHHHHhCcCC----CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---------CCHHHH
Confidence            56666666666    589999999998754   3688999999999998876 999999865321         223456


Q ss_pred             HHHHHHcCCCccc------cCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKCK------NSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~------~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++..++.+..      |..+    ..|||||+|||++|||+..+++++|  +||||+++|.-+
T Consensus       428 ~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l--lDEpTA~LD~et  491 (559)
T COG4988         428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL--LDEPTAHLDAET  491 (559)
T ss_pred             HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE--ecCCccCCCHhH
Confidence            6777777775433      3334    4599999999999999999999998  999999999653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.83  E-value=2.1e-20  Score=157.84  Aligned_cols=117  Identities=18%  Similarity=0.136  Sum_probs=91.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|++++ ++       .+||++|++ .+++.+|+.+++.+.....   .....  .....
T Consensus       362 STLl~~l~G~~~----p~~G~i~~~~-~~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~  424 (552)
T TIGR03719       362 STLFRMITGQEQ----PDSGTIKIGE-TV-------KLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSR  424 (552)
T ss_pred             HHHHHHHcCCCC----CCCeEEEECC-ce-------EEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHH
Confidence            367888888876    5899999854 21       489999986 4778899999997653221   11111  12355


Q ss_pred             HHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++.+++.. ..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll--LDEPt~~LD~~~~~  480 (552)
T TIGR03719       425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL--LDEPTNDLDVETLR  480 (552)
T ss_pred             HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE--EeCCCCCCCHHHHH
Confidence            7899999964 5689999999999999999999999999998  99999999987553

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.83  E-value=1.4e-20  Score=136.96  Aligned_cols=88  Identities=26%  Similarity=0.397  Sum_probs=73.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .+++++|+|+..|    ++|+|+++|.++...   ..++.++|++|++.+++ .|+.||+                    
T Consensus        42 stLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l--------------------   96 (171)
T cd03228          42 STLLKLLLRLYDP----TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI--------------------   96 (171)
T ss_pred             HHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh--------------------
Confidence            3688888888774    899999999987532   23466899999986665 4777665                    


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                          ||+|||||++||+|++.+|+++|  |||||+|+|+.++
T Consensus        97 --------------------LS~G~~~rl~la~al~~~p~lll--lDEP~~gLD~~~~  132 (171)
T cd03228          97 --------------------LSGGQRQRIAIARALLRDPPILI--LDEATSALDPETE  132 (171)
T ss_pred             --------------------hCHHHHHHHHHHHHHhcCCCEEE--EECCCcCCCHHHH
Confidence                                99999999999999999999888  9999999997754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=99.83  E-value=6.5e-21  Score=168.46  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=96.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH--
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR--   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--   84 (156)
                      ||++++.+++.--|.|++|+|.+||.++.+.   ..|+++|.|.|+|.+|.. |++||+.++. ..    .+..+..+  
T Consensus      1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~----vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE----VSEEEIIEAA 1100 (1228)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC----CCHHHHHHHH
Confidence            7888888888888889999999999999754   458889999999999865 9999999872 11    11111111  


Q ss_pred             ---HHHHHHHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         85 ---TVDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        85 ---~~~~~l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                         .+.+.+.  +|++-.|+++    .+||||||||++||||++.+|++||  |||-|++||.-|-+.|
T Consensus      1101 k~ANaH~FI~--sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL--LDEATSALDseSErvV 1165 (1228)
T KOG0055|consen 1101 KLANAHNFIS--SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL--LDEATSALDSESERVV 1165 (1228)
T ss_pred             HHhhhHHHHh--cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee--eeccchhhhhhhHHHH
Confidence               1112222  4455556665    5899999999999999999999998  9999999997655443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.82  E-value=3.4e-20  Score=134.43  Aligned_cols=88  Identities=24%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.        +.++|++|++.++ ..|+.+|+.+.                    
T Consensus        41 STLl~~l~G~~~----~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~--------------------   87 (166)
T cd03223          41 SSLFRALAGLWP----WGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP--------------------   87 (166)
T ss_pred             HHHHHHHhcCCC----CCCceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc--------------------
Confidence            367888888876    48999999873        4689999998754 56999987531                    


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                                   .+.+||+|||||++||||++.+|+++|  +||||+|+|+.++.
T Consensus        88 -------------~~~~LS~G~~~rv~laral~~~p~~ll--lDEPt~~LD~~~~~  128 (166)
T cd03223          88 -------------WDDVLSGGEQQRLAFARLLLHKPKFVF--LDEATSALDEESED  128 (166)
T ss_pred             -------------CCCCCCHHHHHHHHHHHHHHcCCCEEE--EECCccccCHHHHH
Confidence                         357899999999999999999999998  99999999987544

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=5.1e-21  Score=140.32  Aligned_cols=128  Identities=20%  Similarity=0.292  Sum_probs=103.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECC-EecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc--c---CCcH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNG-LEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD--R---NLHH   79 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G-~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~--~---~~~~   79 (156)
                      |++.+|+|...|    +.|+|+|+| .++++.    ..+..||.-||-+..|+++||+||+..+......  .   ....
T Consensus        46 T~mD~ItGKtrp----~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~  121 (249)
T COG4674          46 TLMDVITGKTRP----QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR  121 (249)
T ss_pred             eeeeeecccCCC----CcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC
Confidence            567888888885    899999999 788654    2345578899999999999999999876432210  0   0112


Q ss_pred             HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...++++++++...+|.+..+.....||+|||||+.|++-++++|++++  +|||++||....+
T Consensus       122 ~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLL--lDEPvAGMTd~Et  183 (249)
T COG4674         122 AEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL--LDEPVAGMTDAET  183 (249)
T ss_pred             hhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEE--ecCccCCCcHHHH
Confidence            2345689999999999999999999999999999999999999999888  9999999975433

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=2.8e-20  Score=137.87  Aligned_cols=128  Identities=20%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|.|+|...    |++|+|.++|.++...   ...+..+.+||+..+-+..||.|-+.++...+. .+..+..+.+.
T Consensus        41 STlLk~LsGel~----p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i  115 (259)
T COG4559          41 STLLKALSGELS----PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERI  115 (259)
T ss_pred             HHHHHHhhCccC----CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHH
Confidence            356777777766    5899999999998654   346778999999887667899999887754332 12233456677


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCee----EEecCCCCCCCCch
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV----VKITDSQPRGKWPI  141 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il----l~~~Dep~~g~~~~  141 (156)
                      ++.++...++.....+...+|||||||||.+||.|++-....    .|.|||||+++|.-
T Consensus       116 ~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~  175 (259)
T COG4559         116 AAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA  175 (259)
T ss_pred             HHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchH
Confidence            889999999999999999999999999999999999766655    44599999999865

>KOG0057|consensus

Probab=99.82  E-value=1.9e-20  Score=154.06  Aligned_cols=118  Identities=22%  Similarity=0.264  Sum_probs=91.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |.+|+|.+...     .+|+|++||+++..   ...|+.+|||||+..+|++ |+..|+.++...         ...+++
T Consensus       393 Tilr~LlrF~d-----~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s---------as~eeV  457 (591)
T KOG0057|consen  393 TILRLLLRFFD-----YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPS---------ASDEEV  457 (591)
T ss_pred             HHHHHHHHHhc-----cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCC---------cCHHHH
Confidence            56777777777     49999999999854   3568889999999998865 999999865321         123456


Q ss_pred             HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++.++.++.+.           ...+-..|||||||||++|||++.+|++++  +||||+.+|..+-.
T Consensus       458 ~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~--~DEaTS~LD~~TE~  524 (591)
T KOG0057|consen  458 VEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL--LDEATSALDSETER  524 (591)
T ss_pred             HHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE--ecCcccccchhhHH
Confidence            666777776432           233446799999999999999999999998  99999999976543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.82  E-value=5.1e-20  Score=142.01  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEE-----------ECCEecCcc--c-cc--ceeeEecCCCCCCCCCCHHHHHHHHHHhh
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQIL-----------LNGLEVEKN--L-MV--KVSGFVPQHDLTVDTLTVHEHMTLMARLK   72 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~-----------~~G~~i~~~--~-~~--~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~   72 (156)
                      .|++++|+|++.    |++|+|+           ++|.++...  . .+  ..+++++|+...++. ++.+++.+...  
T Consensus        40 STLlk~l~Gl~~----p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--  112 (255)
T cd03236          40 STALKILAGKLK----PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--  112 (255)
T ss_pred             HHHHHHHhCCcC----CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--
Confidence            367888888877    4899996           788876432  1 11  236888998777764 67777654321  


Q ss_pred             cccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         73 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        73 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                            .....+.+.++++.+++.+..++.+.+||+|||||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus       113 ------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPts~LD~~~~  175 (255)
T cd03236         113 ------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYF--FDEPSSYLDIKQR  175 (255)
T ss_pred             ------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCCCCCCHHHH
Confidence                  11234567899999999988899999999999999999999999999888  9999999998743

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=2.3e-20  Score=142.91  Aligned_cols=99  Identities=27%  Similarity=0.403  Sum_probs=77.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      ||++++...+..+.+|++|+|+|+|.+++...                                     .....+++.++
T Consensus        50 ~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------------------------------------~~~~~~~v~el   92 (268)
T COG4608          50 CGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------------------------------------KEERRERVLEL   92 (268)
T ss_pred             CCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------------------------------hhHHHHHHHHH
Confidence            56666666666666679999999999976432                                     11234678899


Q ss_pred             HHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheeecccccc
Q psy16753         90 LKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVE  153 (156)
Q Consensus        90 l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~~~~~~~  153 (156)
                      ++.+|+.+ ..++++++|||||+||+.|||||+.+|++++  +|||      +|++++++|.||.
T Consensus        93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV--~DEp------vSaLDvSiqaqIl  149 (268)
T COG4608          93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIV--ADEP------VSALDVSVQAQIL  149 (268)
T ss_pred             HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEE--ecCc------hhhcchhHHHHHH
Confidence            99999975 6799999999999999999999999999988  9995      5555555555554

>PLN03232 ABC transporter C family member; Provisional

Probab=99.81  E-value=1.7e-20  Score=172.56  Aligned_cols=117  Identities=17%  Similarity=0.129  Sum_probs=88.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|.|++.    |++|+|.+||.++...   .+|++++++||++.+|++ |+++|+..+.      ..    ..+++
T Consensus      1277 TL~~lL~rl~~----p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~----sdeei 1341 (1495)
T PLN03232       1277 SMLNALFRIVE----LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EH----NDADL 1341 (1495)
T ss_pred             HHHHHHhCCCc----CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CC----CHHHH
Confidence            45555555555    6899999999998643   467889999999999876 9999996431      11    12345


Q ss_pred             HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+           .......+||||||||++|||||+++|+++|  |||||+++|+.+.
T Consensus      1342 ~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI--LDEATSaLD~~Te 1407 (1495)
T PLN03232       1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV--LDEATASVDVRTD 1407 (1495)
T ss_pred             HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHHH
Confidence            55566665532           2223345799999999999999999999888  9999999997643

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.81  E-value=6.2e-20  Score=136.67  Aligned_cols=97  Identities=14%  Similarity=0.059  Sum_probs=75.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .+++++|+|+..  +.|++|+|.++|.++...   . .+..++|+||++.+++..++.+++                   
T Consensus        40 StLl~~l~G~~~--~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l-------------------   98 (200)
T cd03217          40 STLAKTIMGHPK--YEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL-------------------   98 (200)
T ss_pred             HHHHHHHhCCCc--CCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH-------------------
Confidence            367888888852  126899999999988642   1 234589999998877777665543                   


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                     ++...+||+||+||++||+|++.+|+++|  +||||+|+|+.++
T Consensus        99 ---------------~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~  140 (200)
T cd03217          99 ---------------RYVNEGFSGGEKKRNEILQLLLLEPDLAI--LDEPDSGLDIDAL  140 (200)
T ss_pred             ---------------hhccccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence                           11235799999999999999999999888  9999999997754

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.81  E-value=5.3e-20  Score=155.23  Aligned_cols=115  Identities=20%  Similarity=0.139  Sum_probs=87.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.++|++|++.+|+. |+.+|   .      .    ....+.+
T Consensus       364 TL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~  425 (547)
T PRK10522        364 TLAMLLTGLYQ----PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALV  425 (547)
T ss_pred             HHHHHHhCCCC----CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------C----chHHHHH
Confidence            56666666665    5899999999998642   456789999999987764 55554   0      0    1223456


Q ss_pred             HHHHHHcCCCccccCc-----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~-----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.++.+++....+..     ..+||||||||++||||++.+|+++|  +||||+|+|+.+..
T Consensus       426 ~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ili--lDE~ts~LD~~~~~  486 (547)
T PRK10522        426 EKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILL--LDEWAADQDPHFRR  486 (547)
T ss_pred             HHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHHH
Confidence            7888888886543221     35899999999999999999999988  99999999987543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.81  E-value=3.6e-20  Score=171.12  Aligned_cols=117  Identities=21%  Similarity=0.174  Sum_probs=87.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|.|++.    |++|+|.+||.++...   ..|++++++||++.+|.+ |+++|+..+..      .    ..+.+
T Consensus      1280 TLl~lL~rl~~----p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~----tdeei 1344 (1622)
T PLN03130       1280 SMLNALFRIVE----LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------H----NDADL 1344 (1622)
T ss_pred             HHHHHHhCcCC----CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------C----CHHHH
Confidence            45555555555    6899999999998653   467889999999999876 99999964321      1    12345


Q ss_pred             HHHHHHcCCCc-------cccCc----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLK-------CKNSV----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~-------~~~~~----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+       .+|..    ..+||||||||++|||||+.+|+++|  |||||+++|+.+.
T Consensus      1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILI--LDEATSaLD~~Te 1410 (1622)
T PLN03130       1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILV--LDEATAAVDVRTD 1410 (1622)
T ss_pred             HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEE--EECCCCCCCHHHH
Confidence            55566655532       22333    35799999999999999999999888  9999999997643

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.81  E-value=4.6e-20  Score=158.59  Aligned_cols=117  Identities=17%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++++|+|++.    |++|+|.+++        ++.++|+||++.+++. |++||+.+........  ......+++.++
T Consensus       493 TLl~lL~Gl~~----~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~  557 (659)
T TIGR00954       493 SLFRILGELWP----VYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQI  557 (659)
T ss_pred             HHHHHHhCCCC----CCCCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHH
Confidence            67777888765    5899998753        4568999999988877 9999997643211000  000123456788


Q ss_pred             HHHcCCCccccCc---------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         90 LKELGLLKCKNSV---------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        90 l~~~~L~~~~~~~---------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.+++.+..+++         ..+||||||||++||||++++|+++|  |||||+|+|+.+.
T Consensus       558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill--LDEpts~LD~~~~  618 (659)
T TIGR00954       558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI--LDECTSAVSVDVE  618 (659)
T ss_pred             HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence            9999997655543         36899999999999999999999888  9999999998743

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.81  E-value=6.1e-20  Score=155.17  Aligned_cols=118  Identities=18%  Similarity=0.161  Sum_probs=89.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.++|++|++.+|.. |+.+|..            +....+++
T Consensus       383 Tl~~ll~g~~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~  445 (555)
T TIGR01194       383 TLAKLFCGLYI----PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNA  445 (555)
T ss_pred             HHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHH
Confidence            55666666665    6899999999998642   456779999999988765 6666631            11233457


Q ss_pred             HHHHHHcCCCccccCc------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         87 DALLKELGLLKCKNSV------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      .++++.+++.+..+..      ..+||||||||++||||++.+|+++|  +||||+++|+.+...+
T Consensus       446 ~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili--lDE~ts~LD~~~~~~i  509 (555)
T TIGR01194       446 QQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL--FDEWAADQDPAFKRFF  509 (555)
T ss_pred             HHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHHHHH
Confidence            7889999887544332      36799999999999999999999998  9999999998765443

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.81  E-value=1.3e-19  Score=141.61  Aligned_cols=109  Identities=21%  Similarity=0.182  Sum_probs=80.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .+++++|+|++.    |++|+|.++|          .++|++|++.+++. |+.+|+.+....      ..    ..+.+
T Consensus        77 STLl~~I~Gl~~----p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~  131 (282)
T cd03291          77 TSLLMLILGELE----PSEGKIKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKS  131 (282)
T ss_pred             HHHHHHHhCCCC----CCCcEEEECC----------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHH
Confidence            367888888876    5899999988          28999999887775 999998753211      00    01122


Q ss_pred             HHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++.+++.+           ..++.+.+||+|||||++||+||+.+|+++|  +||||+|+|+.+..
T Consensus       132 ~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLi--LDEPt~gLD~~~~~  196 (282)
T cd03291         132 VVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVFTEK  196 (282)
T ss_pred             HHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHHH
Confidence            233333321           2234567999999999999999999999888  99999999988654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.80  E-value=3.4e-20  Score=139.91  Aligned_cols=126  Identities=21%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc----ccccceeeEecCC--CCCCCCCCHHHHHHHHH--HhhcccCCcHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK----NLMVKVSGFVPQH--DLTVDTLTVHEHMTLMA--RLKMDRNLHHVE   81 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~--~~~~~~ltv~e~l~~~~--~~~~~~~~~~~~   81 (156)
                      |++++++|...    |++|.+.+.|+..-+    ...|+.||+|.-+  ..+..+.+++|-+.-+.  ....+.......
T Consensus        72 TLL~ll~~~~~----pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~  147 (257)
T COG1119          72 TLLSLLTGEHP----PSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE  147 (257)
T ss_pred             HHHHHHhcccC----CCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHH
Confidence            56777777766    589999999997632    3557889998654  23345667777654321  111111112345


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ...++..+++.+++.+..+++..+||-|||||+.|||||+.+|+++|  ||||++|+|..
T Consensus       148 ~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLi--LDEP~~GLDl~  205 (257)
T COG1119         148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLI--LDEPAQGLDLI  205 (257)
T ss_pred             HHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEE--ecCccccCChH
Confidence            56788899999999999999999999999999999999999999887  99999999955

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.80  E-value=1.5e-19  Score=154.98  Aligned_cols=116  Identities=20%  Similarity=0.192  Sum_probs=90.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|++ |.++       .+||++|+. .+++..|+.+++.+.....   ...  .....+.
T Consensus       359 STLlk~l~G~~~----p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~  421 (635)
T PRK11147        359 TTLLKLMLGQLQ----ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVL  421 (635)
T ss_pred             HHHHHHHhCCCC----CCCcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHH
Confidence            367788888766    58999998 5432       489999985 5778899999987643110   011  1134577


Q ss_pred             HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++. +..++++.+|||||||||+||+|++.+|+++|  |||||+|+|+.+.
T Consensus       422 ~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl--LDEPt~~LD~~~~  476 (635)
T PRK11147        422 GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI--LDEPTNDLDVETL  476 (635)
T ss_pred             HHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence            889999996 46789999999999999999999999999988  9999999998754

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.80  E-value=1.7e-19  Score=135.57  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEE-ECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQIL-LNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~-~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|. ++|..+.          +.+.+.+++.+|+.+|+.+....+   ......   ...
T Consensus        27 STLlk~i~Gl~~----~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl~~~~~~~---~~~~~~---~~~   86 (213)
T PRK15177         27 TTLTRLLCGLDA----PDEGDFIGLRGDALP----------LGANSFILPGLTGEENARMMASLY---GLDGDE---FSH   86 (213)
T ss_pred             HHHHHHHhCCcc----CCCCCEEEecCceec----------cccccccCCcCcHHHHHHHHHHHc---CCCHHH---HHH
Confidence            367888888876    4899997 7775431          123455778899999998765432   112211   223


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++++...++++.+||+|||||++||+|++.+|+++|  +|||++++|+.++
T Consensus        87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~lll--lDEP~~~lD~~~~  140 (213)
T PRK15177         87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYI--ADGKLYTGDNATQ  140 (213)
T ss_pred             HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEE--ECCCCccCCHHHH
Confidence            34566788877889999999999999999999999999888  9999999998654

>KOG0065|consensus

Probab=99.80  E-value=3.1e-20  Score=164.61  Aligned_cols=133  Identities=24%  Similarity=0.423  Sum_probs=115.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|||++|+|.....  ..+|+|.++|.+......++.+|||-|++.+.+.+||+|.+.|.+.+|.+...+..+..+.+++
T Consensus       831 TTLLdvLA~R~t~G--~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~  908 (1391)
T KOG0065|consen  831 TTLLDVLAGRKTGG--YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEE  908 (1391)
T ss_pred             HHHHHHHhcCcccc--eEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            37999999997665  3799999999998766678889999999999999999999999998887766666666688999


Q ss_pred             HHHHcCCCccccCccCc----CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNV----LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~----LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.++|+++.|..++.    ||..||||+.||.-|+.+|+.|| .|||||+|||+.++-
T Consensus       909 Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il-FLDEPTSGLDsqaA~  967 (1391)
T KOG0065|consen  909 VIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL-FLDEPTSGLDSQAAA  967 (1391)
T ss_pred             HHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE-EecCCCCCccHHHHH
Confidence            99999999888877766    99999999999999999996554 589999999988653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.80  E-value=6.8e-20  Score=168.06  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=91.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEE-CCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-------cCC-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILL-NGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-------RNL-   77 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~-~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-------~~~-   77 (156)
                      |++++|+|++.    |++|+|++ +|.++..   ..+++.+|||+|++.+|+. |+.||+.++......       ... 
T Consensus       426 TLl~lL~gl~~----p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~  500 (1466)
T PTZ00265        426 TILKLIERLYD----PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNED  500 (1466)
T ss_pred             HHHHHHHHhcc----CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccc
Confidence            56666666666    58999999 5677643   2357789999999998875 999999875210000       000 


Q ss_pred             ----------------------------------------cHHHHHHHHHHHHHHcCCCcc-----------ccCccCcC
Q psy16753         78 ----------------------------------------HHVERARTVDALLKELGLLKC-----------KNSVLNVL  106 (156)
Q Consensus        78 ----------------------------------------~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~L  106 (156)
                                                              ......+.+.++++.+++.+.           .+....+|
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~L  580 (1466)
T PTZ00265        501 GNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKL  580 (1466)
T ss_pred             cccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcC
Confidence                                                    000112456677777766432           24556789


Q ss_pred             ChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753        107 SGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus       107 SgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      |||||||++|||||+.+|+++|  |||||+++|+.+..
T Consensus       581 SGGQkQRiaIARAll~~P~ILl--LDEpTSaLD~~se~  616 (1466)
T PTZ00265        581 SGGQKQRISIARAIIRNPKILI--LDEATSSLDNKSEY  616 (1466)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHH
Confidence            9999999999999999999988  99999999987544

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=5.4e-20  Score=130.22  Aligned_cols=125  Identities=19%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      ++++-+.|.+.+.+ ..+|++++++++++.. ..++++|++||++.+||.++|.+|+.|.....    ......++.+..
T Consensus        43 TLls~~~G~La~~F-~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~----~KG~aRr~~a~a  117 (213)
T COG4136          43 TLLSWMIGALAGQF-SCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT----LKGNARRNAANA  117 (213)
T ss_pred             HHHHHHHhhcccCc-ceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc----cccHHHHhhHHH
Confidence            44555556555533 4689999999998754 34678999999999999999999998764322    233445567889


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+++.++....++.+.+||||||-||++-|+|...|+.++  |||||+-+|+.
T Consensus       118 AL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL--LDEPFS~LD~A  168 (213)
T COG4136         118 ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALL--LDEPFSRLDVA  168 (213)
T ss_pred             HHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceee--eCCchhHHHHH
Confidence            9999999998999999999999999999999999999998  99999999854

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.7e-20  Score=152.88  Aligned_cols=122  Identities=27%  Similarity=0.312  Sum_probs=96.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||++++.+++...+.|++|+|.++|.++..   ..+++.+++++|...+|.. |+++|+..+...         ...+.+
T Consensus       375 sGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~---------AsDEel  444 (573)
T COG4987         375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD---------ASDEEL  444 (573)
T ss_pred             CCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC---------CCHHHH
Confidence            677888888887777899999999998754   2467789999999988765 999999865321         123456


Q ss_pred             HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.++|.+.           .+.--+.||||||||++|||+|.++++++|  |||||-|+||.+.
T Consensus       445 ~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l--LDEPTegLD~~TE  510 (573)
T COG4987         445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL--LDEPTEGLDPITE  510 (573)
T ss_pred             HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE--ecCCcccCChhhH
Confidence            677777777543           233346799999999999999999999998  9999999999854

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.9e-20  Score=136.57  Aligned_cols=124  Identities=21%  Similarity=0.289  Sum_probs=105.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++.++++..    ++|+|+++|.+++..   ..++.++.+.|+...-..+||++-+.|+. +....+....+++..
T Consensus        41 STLLS~~sRL~~~----d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGR-fPYSqGRlt~eD~~~  115 (252)
T COG4604          41 STLLSMMSRLLKK----DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGR-FPYSQGRLTKEDRRI  115 (252)
T ss_pred             HHHHHHHHHhccc----cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCC-CcccCCCCchHHHHH
Confidence            4677788888774    899999999998643   45677889999988888999999888764 322223345567788


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW  139 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~  139 (156)
                      +.++++.++|++..|++..+||||||||..||+.++++.++++  ||||-+.+|
T Consensus       116 I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl--LDEPLNNLD  167 (252)
T COG4604         116 INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL--LDEPLNNLD  167 (252)
T ss_pred             HHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEE--ecCcccccc
Confidence            9999999999999999999999999999999999999999998  999999998

>PRK13409 putative ATPase RIL; Provisional

Probab=99.79  E-value=1.4e-19  Score=153.70  Aligned_cols=117  Identities=20%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEE-----------ECCEecCccc-----ccceeeEecCCCCCCCC---CCHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQIL-----------LNGLEVEKNL-----MVKVSGFVPQHDLTVDT---LTVHEHMTLMA   69 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~-----------~~G~~i~~~~-----~~~~ig~v~Q~~~~~~~---ltv~e~l~~~~   69 (156)
                      .|++|+|+|++.|    ++|+|.           |+|.++....     ....+++.+|....++.   .|+.+++... 
T Consensus       113 STLlkiL~G~l~p----~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-  187 (590)
T PRK13409        113 TTAVKILSGELIP----NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV-  187 (590)
T ss_pred             HHHHHHHhCCccC----CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh-
Confidence            3788888888774    899997           9998874311     11235666665444332   2787776421 


Q ss_pred             HhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         70 RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                 ....++.++++.+++.+..++.+.+||||||||++||+||+.+|+++|  |||||+|||+.++
T Consensus       188 -----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lll--LDEPts~LD~~~~  248 (590)
T PRK13409        188 -----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYF--FDEPTSYLDIRQR  248 (590)
T ss_pred             -----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence                       123467889999999988899999999999999999999999999988  9999999998743

>PTZ00243 ABC transporter; Provisional

Probab=99.79  E-value=1.9e-19  Score=166.04  Aligned_cols=117  Identities=20%  Similarity=0.218  Sum_probs=89.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|.|++.    |++|+|.+||.++...   ..|+.++++||++.+|.. |+++|+....      ..    ..+.+
T Consensus      1351 TLl~lLlrl~~----p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~----sdeeI 1415 (1560)
T PTZ00243       1351 TLLLTFMRMVE----VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EA----SSAEV 1415 (1560)
T ss_pred             HHHHHHhCCCC----CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CC----CHHHH
Confidence            45566666665    5899999999998643   467889999999999876 9999995321      11    12456


Q ss_pred             HHHHHHcCCCcc-------ccCcc----CcCChHHHHHHHHHHHHhcC-CCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKC-------KNSVL----NVLSGGERKRVALAVQVSQD-CSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~-------~~~~~----~~LSgGerqrv~LA~AL~~~-p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.+.       .|..+    .+||||||||++|||||+.+ |+++|  |||||+++|+.+.
T Consensus      1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl--LDEATSaLD~~te 1482 (1560)
T PTZ00243       1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL--MDEATANIDPALD 1482 (1560)
T ss_pred             HHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE--EeCCCccCCHHHH
Confidence            677777776432       34444    57999999999999999995 89887  9999999997643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.78  E-value=1.9e-19  Score=165.97  Aligned_cols=116  Identities=18%  Similarity=0.120  Sum_probs=88.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|.|++.    |++|+|.+||.|+...   ..|+.++++||++.+|++ |+++|+....      ..    ..+.+
T Consensus      1327 TL~~lL~rl~~----~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~----sdeei 1391 (1522)
T TIGR00957      1327 SLTLGLFRINE----SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QY----SDEEV 1391 (1522)
T ss_pred             HHHHHHhcCcc----CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CC----CHHHH
Confidence            45566666655    6899999999998653   467889999999999986 9999996321      11    12345


Q ss_pred             HHHHHHcCCCc-------cccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLK-------CKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~-------~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++..++.+       .+|..+    .+||||||||++||||++.+|+++|  |||||+++|+.+
T Consensus      1392 ~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi--LDEaTSalD~~T 1456 (1522)
T TIGR00957      1392 WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV--LDEATAAVDLET 1456 (1522)
T ss_pred             HHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHH
Confidence            55666665532       234444    5699999999999999999999888  999999999764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=9e-19  Score=150.16  Aligned_cols=112  Identities=22%  Similarity=0.208  Sum_probs=86.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|++.    |++|+|.+++.        ..+||++|+.  .+.+..++.+++..   ..      .......+
T Consensus       352 STLlk~l~G~~~----p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~  410 (638)
T PRK10636        352 STLIKLLAGELA----PVSGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKL  410 (638)
T ss_pred             HHHHHHHhCCCC----CCCCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHH
Confidence            367888888876    58999998641        2589999974  23445566665421   11      11223567


Q ss_pred             HHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++. +..++++.+|||||||||+||++++.+|+++|  |||||+|||+.+.
T Consensus       411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLl--LDEPt~~LD~~~~  466 (638)
T PRK10636        411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLL--LDEPTNHLDLDMR  466 (638)
T ss_pred             HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence            8999999996 46789999999999999999999999999888  9999999998754

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.77  E-value=7.4e-19  Score=161.77  Aligned_cols=115  Identities=19%  Similarity=0.265  Sum_probs=90.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.     ++|+|++||.++...   ..|+.++|+||++.+|++ |+++|+....      .    ...+.+
T Consensus      1260 TLl~lL~rl~~-----~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei 1323 (1490)
T TIGR01271      1260 TLLSALLRLLS-----TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEI 1323 (1490)
T ss_pred             HHHHHHhhhcC-----CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHH
Confidence            67778888764     589999999998643   467889999999999986 9999995321      1    112456


Q ss_pred             HHHHHHcCCCcc-------ccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKC-------KNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~-------~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++.+++.+.       +|..+    .+||||||||++|||||+.+|+++|  |||||+++|+.+
T Consensus      1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl--LDEaTS~lD~~T 1388 (1490)
T TIGR01271      1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL--LDEPSAHLDPVT 1388 (1490)
T ss_pred             HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE--EeCCcccCCHHH
Confidence            677777777432       33333    3699999999999999999999888  999999999764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=99.77  E-value=2.1e-18  Score=149.28  Aligned_cols=114  Identities=17%  Similarity=0.168  Sum_probs=84.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|++++.        ..+||++|+..  ..+++.++......... ...    ..+.+.+
T Consensus       549 STLLk~L~Gll~----p~~G~I~~~~~--------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~-~~~----~~~~i~~  609 (718)
T PLN03073        549 STILKLISGELQ----PSSGTVFRSAK--------VRMAVFSQHHV--DGLDLSSNPLLYMMRCF-PGV----PEQKLRA  609 (718)
T ss_pred             HHHHHHHhCCCC----CCCceEEECCc--------eeEEEEecccc--ccCCcchhHHHHHHHhc-CCC----CHHHHHH
Confidence            367888888776    58999998652        35899999853  33445444322211111 111    1346788


Q ss_pred             HHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.. ..++++.+||||||||++||+|++.+|+++|  |||||+|+|+.+.
T Consensus       610 ~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL--LDEPT~~LD~~s~  663 (718)
T PLN03073        610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL--LDEPSNHLDLDAV  663 (718)
T ss_pred             HHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence            999999974 6789999999999999999999999999998  9999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=5e-18  Score=145.63  Aligned_cols=120  Identities=16%  Similarity=0.095  Sum_probs=83.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHH-------------------
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-------------------   69 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-------------------   69 (156)
                      .|++|+|+|.+.    |++|+|.++|..        .++|++|+...+ ..++.+++.-..                   
T Consensus        41 STLLkiL~G~~~----pd~G~I~~~~~~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~  107 (638)
T PRK10636         41 STLLALLKNEIS----ADGGSYTFPGNW--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDG  107 (638)
T ss_pred             HHHHHHHhCCCC----CCCceEEecCCC--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence            378888888776    589999998742        267777754322 234433322100                   


Q ss_pred             ----Hhhcc-cCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         70 ----RLKMD-RNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        70 ----~~~~~-~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          ..... ..........++.++++.+|+. +..++++.+|||||||||+||+||+.+|+++|  |||||+|||+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL--LDEPtn~LD~~~~  185 (638)
T PRK10636        108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL--LDEPTNHLDLDAV  185 (638)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE--EcCCCCcCCHHHH
Confidence                00000 0000012235788999999997 46799999999999999999999999999888  9999999998754

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=8.8e-18  Score=125.83  Aligned_cols=135  Identities=16%  Similarity=0.130  Sum_probs=101.9

Q ss_pred             HHHHHHhhhhhc--CCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVH--ELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~--~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      ||+++|+..+.+  .++.++|+|.|+|++++..    ..+.-+..-||+|.-++..++.+.+..+.+......-...+..
T Consensus        41 sGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~  120 (251)
T COG0396          41 SGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFI  120 (251)
T ss_pred             CCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHH
Confidence            344444444443  4667999999999999754    2344467789999999999999998876654321110123445


Q ss_pred             HHHHHHHHHcCCCc-cccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         84 RTVDALLKELGLLK-CKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        84 ~~~~~~l~~~~L~~-~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      +.+++.++.+++.+ .+++.+. .+|||||+|..|+..++.+|++.|  ||||.+|+|..+-..|
T Consensus       121 ~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~I--LDE~DSGLDIdalk~V  183 (251)
T COG0396         121 KELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI--LDEPDSGLDIDALKIV  183 (251)
T ss_pred             HHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEE--ecCCCcCccHHHHHHH
Confidence            67889999999986 6677774 699999999999999999999888  9999999997755443

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=1.6e-18  Score=132.77  Aligned_cols=128  Identities=18%  Similarity=0.140  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEec-CCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~-Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.|    ++|+|.++|.+.-..  ..-+++++++ |...+.-.+.+.+.+......+   ......-+++
T Consensus        64 STtLKmLTGll~p----~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r  136 (325)
T COG4586          64 STTLKMLTGLLLP----TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAER  136 (325)
T ss_pred             hhhHHHHhCcccc----CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHH
Confidence            3789999999995    899999999876432  2234456553 3344444455666665543332   2334445578


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ...+.+.+++++.++.+++.||-|||.|+.||.||+++|++++  |||||-|+|+.++-.
T Consensus       137 ~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLf--LDEpTvgLDV~aq~~  194 (325)
T COG4586         137 LDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLF--LDEPTVGLDVNAQAN  194 (325)
T ss_pred             HHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEE--ecCCccCcchhHHHH
Confidence            8899999999999999999999999999999999999999998  999999999885543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.75  E-value=2.6e-18  Score=124.23  Aligned_cols=75  Identities=24%  Similarity=0.256  Sum_probs=62.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++++|+|++.    |++|+|.++|.++...    ..++.++|++|                                 
T Consensus        40 STLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------------------------------   82 (163)
T cd03216          40 STLMKILSGLYK----PDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------------------------------   82 (163)
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHHhcCeEEEEe---------------------------------
Confidence            367888888877    4899999999987532    12456788887                                 


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                           ||+||+||++||+|++.+|+++|  +||||+|+|+.+.
T Consensus        83 ---------------------LS~G~~qrl~laral~~~p~ill--lDEP~~~LD~~~~  118 (163)
T cd03216          83 ---------------------LSVGERQMVEIARALARNARLLI--LDEPTAALTPAEV  118 (163)
T ss_pred             ---------------------cCHHHHHHHHHHHHHhcCCCEEE--EECCCcCCCHHHH
Confidence                                 99999999999999999999998  9999999997643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.75  E-value=1.9e-18  Score=141.35  Aligned_cols=121  Identities=23%  Similarity=0.285  Sum_probs=85.0

Q ss_pred             HHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH---
Q psy16753         11 GIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR---   84 (156)
Q Consensus        11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~---   84 (156)
                      |+++|+..+.+...|++|.|.+||-++...   ...+++||+||+..+|+. |+.||+.=+..     ..+..+.-+   
T Consensus       374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~-----~~d~~kIieAA~  447 (580)
T COG4618         374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGE-----EADPEKVIEAAR  447 (580)
T ss_pred             cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccc-----cCCHHHHHHHHH
Confidence            444444444444446999999999998754   346789999999999987 99999852211     111111111   


Q ss_pred             --HHHHHHHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         85 --TVDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        85 --~~~~~l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                        .+.+++-  .+.+-.|+.+    ..||||||||+++||||..+|.+++  ||||-+.+|..
T Consensus       448 lAgvHelIl--~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV--LDEPNsNLD~~  506 (580)
T COG4618         448 LAGVHELIL--RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV--LDEPNSNLDSE  506 (580)
T ss_pred             HcChHHHHH--hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE--ecCCCCCcchh
Confidence              1223332  3445566666    4699999999999999999999888  99999999964

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.74  E-value=3.7e-18  Score=157.21  Aligned_cols=117  Identities=17%  Similarity=0.127  Sum_probs=81.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH-HHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA-RTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-~~~~~   88 (156)
                      |++++|+|.+.    |++|+|.++|          .++|++|++.+++. |++||+.|+....  ........+ ..+.+
T Consensus       467 TLl~~l~G~~~----~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~~--~~~~~~~~~~~~L~~  529 (1490)
T TIGR01271       467 SLLMMIMGELE----PSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSYD--EYRYTSVIKACQLEE  529 (1490)
T ss_pred             HHHHHHhCCCC----CCCceEEECC----------EEEEEeCCCccCCc-cHHHHHHhccccc--hHHHHHHHHHHhHHH
Confidence            67777777777    4899999988          38999999998875 9999998763211  000000000 01122


Q ss_pred             HHHHcCC--CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         89 LLKELGL--LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        89 ~l~~~~L--~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      .++.+..  ......+..+||||||||++||||++.+|+++|  ||||++|+|+.++..
T Consensus       530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ill--LDep~saLD~~~~~~  586 (1490)
T TIGR01271       530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFTHLDVVTEKE  586 (1490)
T ss_pred             HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHHH
Confidence            2333221  112345678999999999999999999999998  999999999875433

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1.1e-17  Score=137.93  Aligned_cols=125  Identities=21%  Similarity=0.254  Sum_probs=98.2

Q ss_pred             HHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhh-ccc-CCcHHH
Q psy16753         11 GIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLK-MDR-NLHHVE   81 (156)
Q Consensus        11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~-~~~-~~~~~~   81 (156)
                      ++++|.|...    +.+|+|.++|+++...    ..+..++|+|.+-   .++...++.+|+.+....+ ..+ ..+...
T Consensus       301 l~~~lfG~~~----~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~  376 (500)
T COG1129         301 LARALFGARP----ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK  376 (500)
T ss_pred             HHHHHhCCCc----CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHH
Confidence            5678888655    4799999999987532    2345689999984   5688999999998762212 111 234555


Q ss_pred             HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ....+++..+.+++. +..++++..||||.||||.|||.|+.+|+++|  +||||+|+|.=
T Consensus       377 e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLi--lDEPTRGIDVG  435 (500)
T COG1129         377 ERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLI--LDEPTRGIDVG  435 (500)
T ss_pred             HHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEE--ECCCCcCcccc
Confidence            667888999999996 44578999999999999999999999999888  99999999964

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.73  E-value=1.1e-17  Score=121.98  Aligned_cols=124  Identities=21%  Similarity=0.239  Sum_probs=96.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      ++-|+|+|.+.    |++|+|.++|+.+.-.   ...+.+.++||++..  -|.+.+-+.+....++  ...+.....++
T Consensus        54 TLakMlaGmi~----PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~  127 (267)
T COG4167          54 TLAKMLAGMIE----PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRK  127 (267)
T ss_pred             HHHHHHhcccC----CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHH
Confidence            56677788777    5999999999987532   334668899999764  3555555555444333  23456667778


Q ss_pred             HHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         85 TVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        85 ~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++.+-++.+||- +..+-++..||.||||||++||||+.+|+++|  .||.-+++|..
T Consensus       128 ~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iII--aDeAl~~LD~s  183 (267)
T COG4167         128 QIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIII--ADEALASLDMS  183 (267)
T ss_pred             HHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEE--ehhhhhhccHH
Confidence            899999999995 56788999999999999999999999999887  99988888854

>PLN03232 ABC transporter C family member; Provisional

Probab=99.73  E-value=5e-18  Score=156.46  Aligned_cols=112  Identities=19%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      ||+++|...+...++|++|.+.         ..++.++|++|++.+++. |++||+.|+...          ..+++.++
T Consensus       654 SGKSTLl~lLlG~~~~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~----------~~e~~~~v  713 (1495)
T PLN03232        654 EGKTSLISAMLGELSHAETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSDF----------ESERYWRA  713 (1495)
T ss_pred             CcHHHHHHHHhCCCcccCCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCcc----------CHHHHHHH
Confidence            3444444444444445788663         235679999999999875 999999876321          22456666


Q ss_pred             HHHcCCCccc-------cC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         90 LKELGLLKCK-------NS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        90 l~~~~L~~~~-------~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.+++.+..       ++    ...+||||||||++||||+..+|+++|  |||||+++|+.+.
T Consensus       714 l~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL--LDEptSaLD~~t~  776 (1495)
T PLN03232        714 IDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI--FDDPLSALDAHVA  776 (1495)
T ss_pred             HHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHHH
Confidence            7766664221       22    334699999999999999999999998  9999999997643

>PLN03130 ABC transporter C family member; Provisional

Probab=99.73  E-value=7.6e-18  Score=155.87  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=82.0

Q ss_pred             HHHHHHhhhhhcCCCCcc-eEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVD-GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~-G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      |++++|+|.+.    |++ |+|.+          +..++|++|++.+++. |++||+.|+...          +.+++.+
T Consensus       658 TLl~lLlG~~~----~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~----------d~e~y~~  712 (1622)
T PLN03130        658 SLISAMLGELP----PRSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF----------DPERYER  712 (1622)
T ss_pred             HHHHHHHHhhc----cCCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCcc----------cHHHHHH
Confidence            56677777766    578 89974          4568999999999875 999999876321          2345667


Q ss_pred             HHHHcCCCccc-------cC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCK-------NS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~-------~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..       ++    ...+||||||||++||||+..+|+++|  |||||+++|+.+.
T Consensus       713 vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL--LDEptSALD~~~~  776 (1622)
T PLN03130        713 AIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI--FDDPLSALDAHVG  776 (1622)
T ss_pred             HHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE--ECCCccccCHHHH
Confidence            77777664321       22    335699999999999999999999998  9999999997643

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.73  E-value=2.6e-17  Score=141.13  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..++.++++.+++.  .++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.+.
T Consensus       136 ~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLL--LDEPt~~LD~~~~  192 (635)
T PRK11147        136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLL--LDEPTNHLDIETI  192 (635)
T ss_pred             HHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCCccCHHHH
Confidence            45688999999996  378999999999999999999999999888  9999999998754

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.71  E-value=1.9e-17  Score=152.87  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=79.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++++|+|.+.    |++|+|.++|          .++|++|++.+++ .|++||+.++...      +.    ++.+++
T Consensus       679 TLl~~l~g~~~----~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~----~~~~~~  733 (1522)
T TIGR00957       679 SLLSALLAEMD----KVEGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKAL------NE----KYYQQV  733 (1522)
T ss_pred             HHHHHHhCCCc----cCCcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCcc------CH----HHHHHH
Confidence            56677777666    5899999987          4899999998764 6999999875321      11    122222


Q ss_pred             HHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         90 LKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        90 l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.+++           ....+.+..+||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       734 ~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ill--LDEp~saLD~~~~  796 (1522)
T TIGR00957       734 LEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL--FDDPLSAVDAHVG  796 (1522)
T ss_pred             HHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHHH
Confidence            332222           123356678999999999999999999999998  9999999998644

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1.5e-17  Score=120.02  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEe--cC--c-c------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLE--VE--K-N------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL   77 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~--i~--~-~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~   77 (156)
                      .|++++|.|.+.+    ++|+|++.-..  +.  . .      -.++-+|||.|.....|..+..+-.......   .+.
T Consensus        51 Stllr~LYaNY~~----d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv  123 (235)
T COG4778          51 STLLRSLYANYLP----DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGV  123 (235)
T ss_pred             HHHHHHHHhccCC----CCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCC
Confidence            4678888888885    89999886432  21  1 1      1245589999998888988888866554332   245


Q ss_pred             cHHHHHHHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         78 HHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .......++..++.++++.+.+ .-.+.++||||||||-|||+++.+=++++  |||||+++|..
T Consensus       124 ~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL--LDEPTasLDa~  186 (235)
T COG4778         124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL--LDEPTASLDAT  186 (235)
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE--ecCCccccccc
Confidence            5667778899999999997654 66789999999999999999999998887  99999999965

>PTZ00243 ABC transporter; Provisional

Probab=99.70  E-value=3.7e-17  Score=151.00  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=82.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++++|+|.+.    |++|+|.+.          +.+||++|++.+++ .|++||+.++..... ...........+.+.
T Consensus       701 TLL~~i~G~~~----~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~-~~~~~~~~~~~l~~~  764 (1560)
T PTZ00243        701 TLLQSLLSQFE----ISEGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDEEDA-ARLADAVRVSQLEAD  764 (1560)
T ss_pred             HHHHHHhcCCC----CCCcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCChhhH-HHHHHHHHHhhhHHH
Confidence            56677777666    589999852          45899999998764 699999987432110 000000001123344


Q ss_pred             HHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         90 LKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        90 l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++.+  |+....+++..+||||||||++||||++.+|+++|  ||||++++|+.+
T Consensus       765 l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ill--LDEP~saLD~~~  817 (1560)
T PTZ00243        765 LAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYL--LDDPLSALDAHV  817 (1560)
T ss_pred             HHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHHH
Confidence            5555  66656678889999999999999999999999998  999999999864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.70  E-value=4.3e-17  Score=119.43  Aligned_cols=69  Identities=20%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|.+         ++|++|+..                                  
T Consensus        39 STLl~~l~Gl~~----p~~G~i~~~g~~---------i~~~~q~~~----------------------------------   71 (177)
T cd03222          39 TTAVKILAGQLI----PNGDNDEWDGIT---------PVYKPQYID----------------------------------   71 (177)
T ss_pred             HHHHHHHHcCCC----CCCcEEEECCEE---------EEEEcccCC----------------------------------
Confidence            377888888877    489999999863         577777432                                  


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                       ||+|||||++||+|++.+|++++  +||||+|+|+.++
T Consensus        72 -----------------LSgGq~qrv~laral~~~p~lll--LDEPts~LD~~~~  107 (177)
T cd03222          72 -----------------LSGGELQRVAIAAALLRNATFYL--FDEPSAYLDIEQR  107 (177)
T ss_pred             -----------------CCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence                             99999999999999999999888  9999999997753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.69  E-value=6e-17  Score=114.88  Aligned_cols=68  Identities=22%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .+++++|+|+..    |++|+|+++|.        ..++|++|                                     
T Consensus        40 StLl~~l~G~~~----~~~G~i~~~~~--------~~i~~~~~-------------------------------------   70 (144)
T cd03221          40 STLLKLIAGELE----PDEGIVTWGST--------VKIGYFEQ-------------------------------------   70 (144)
T ss_pred             HHHHHHHcCCCC----CCceEEEECCe--------EEEEEEcc-------------------------------------
Confidence            367888888876    48999999984        35788888                                     


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                                       ||+||+||++||+|++.+|+++|  +|||++|+|+.+..
T Consensus        71 -----------------lS~G~~~rv~laral~~~p~ill--lDEP~~~LD~~~~~  107 (144)
T cd03221          71 -----------------LSGGEKMRLALAKLLLENPNLLL--LDEPTNHLDLESIE  107 (144)
T ss_pred             -----------------CCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHHH
Confidence                             99999999999999999999888  99999999987544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.69  E-value=1.5e-16  Score=133.32  Aligned_cols=118  Identities=18%  Similarity=0.113  Sum_probs=88.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh-h-cccC----------
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-K-MDRN----------   76 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~-~~~~----------   76 (156)
                      .|+||+|+|...    |++|+|...+-        -.++|++|++...+..|+.+.+..+... . ....          
T Consensus        43 STLLkilaG~~~----~~~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~  110 (530)
T COG0488          43 STLLKILAGELE----PDSGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD  110 (530)
T ss_pred             HHHHHHHcCCCc----CCCCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence            367788888776    58999975332        2479999999998888998877543211 0 0000          


Q ss_pred             ---------------CcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         77 ---------------LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        77 ---------------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                                     ...-....++..++..+++.+. ++++.+||||+|.||+||+||..+|+++|  ||||||.||..
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLL--LDEPTNHLD~~  187 (530)
T COG0488         111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLL--LDEPTNHLDLE  187 (530)
T ss_pred             chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCcccCHH
Confidence                           0000123567788999999877 89999999999999999999999999888  99999999954

>KOG0054|consensus

Probab=99.66  E-value=1.4e-16  Score=143.53  Aligned_cols=105  Identities=24%  Similarity=0.274  Sum_probs=87.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++++|.|....    .+|+|.++|.          ++|+||++..++. |++||+.|+..+          ++++.+++
T Consensus       562 SLL~AiLGEm~~----~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~V  616 (1381)
T KOG0054|consen  562 SLLSAILGEMPK----LSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKV  616 (1381)
T ss_pred             HHHHHHhcCccc----ccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHH
Confidence            677777777774    8999998887          7999999998765 999999987543          35678888


Q ss_pred             HHHcCCCcccc-----------CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         90 LKELGLLKCKN-----------SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        90 l~~~~L~~~~~-----------~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++.+.|++..+           .+--+||||||||++||||+.+++++++  ||.|.+++|.-
T Consensus       617 i~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYL--LDDplSAVDah  677 (1381)
T KOG0054|consen  617 IKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYL--LDDPLSAVDAH  677 (1381)
T ss_pred             HHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEE--EcCcchhhhHh
Confidence            99998864333           3335799999999999999999999999  99999999864

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.65  E-value=2.4e-16  Score=112.96  Aligned_cols=75  Identities=31%  Similarity=0.457  Sum_probs=62.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    +.+|+|+++|.++...   ..+..++|++|                                  
T Consensus        39 Stll~~l~g~~~----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----------------------------------   80 (157)
T cd00267          39 STLLRAIAGLLK----PTSGEILIDGKDIAKLPLEELRRRIGYVPQ----------------------------------   80 (157)
T ss_pred             HHHHHHHhCCCC----CCccEEEECCEEcccCCHHHHHhceEEEee----------------------------------
Confidence            367888888876    4899999999987532   23456788888                                  


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                          ||+||+||++||+|++.+|++++  +||||+|+|+.+.
T Consensus        81 --------------------lS~G~~~r~~l~~~l~~~~~i~i--lDEp~~~lD~~~~  116 (157)
T cd00267          81 --------------------LSGGQRQRVALARALLLNPDLLL--LDEPTSGLDPASR  116 (157)
T ss_pred             --------------------CCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence                                99999999999999999999998  9999999997643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0056|consensus

Probab=99.65  E-value=3.1e-17  Score=134.23  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=85.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      +.+++|.+.+.    .++|.|.+||+|+.+-   ..|+.||.|||+..+|++ |+..|+.++..-...   .......++
T Consensus       579 TimRlLfRffd----v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~Asn---eevyaAAkA  650 (790)
T KOG0056|consen  579 TIMRLLFRFFD----VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASN---EEVYAAAKA  650 (790)
T ss_pred             HHHHHHHHHhh----ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCCh---HHHHHHHHH
Confidence            45666666666    4899999999999653   568889999999999876 888888865322110   000011111


Q ss_pred             HHH-HHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         87 DAL-LKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        87 ~~~-l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+ =+.+++.+..+.++    -+|||||||||+|||++..+|.+++  |||.|+++|--
T Consensus       651 A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl--LDEATSALDT~  708 (790)
T KOG0056|consen  651 AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL--LDEATSALDTN  708 (790)
T ss_pred             hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE--EcchhhhcCCc
Confidence            111 12234444445555    4699999999999999999999888  99999999854

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.65  E-value=4e-16  Score=114.19  Aligned_cols=55  Identities=27%  Similarity=0.334  Sum_probs=48.0

Q ss_pred             HHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcC--CCeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQD--CSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~--p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++.+++.. ..++++.+||+|||||++||+|++.+  |+++|  +||||+|+|+.+..
T Consensus        69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llL--lDEPt~~LD~~~~~  126 (176)
T cd03238          69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFI--LDEPSTGLHQQDIN  126 (176)
T ss_pred             HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEE--EeCCcccCCHHHHH
Confidence            3577888875 37889999999999999999999999  99888  99999999987443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.64  E-value=2.3e-16  Score=117.38  Aligned_cols=107  Identities=16%  Similarity=0.113  Sum_probs=77.0

Q ss_pred             HHHHHHhhhhhcC-----CCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753         10 SGIHLLGQRVVHE-----LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~-----~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      +++++|+|++.+.     ..+..|++.+.|.+......+..++++||++..+          +.  .   .      ..+
T Consensus        37 tll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~---~------~~~   95 (197)
T cd03278          37 NIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--I---I------SQG   95 (197)
T ss_pred             HHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--E---E------ehh
Confidence            6788888887542     1123467888888764433456799999998765          10  0   0      023


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCchh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++.++++.   .+..++++.+||+|||||++||++++    .+|++++  +|||++|+|+..
T Consensus        96 ~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~ill--lDEP~~~LD~~~  152 (197)
T cd03278          96 DVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCV--LDEVDAALDDAN  152 (197)
T ss_pred             hHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEE--EeCCcccCCHHH
Confidence            45566666   45578889999999999999999997    4668887  999999999763

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=6.3e-17  Score=130.11  Aligned_cols=123  Identities=18%  Similarity=0.252  Sum_probs=81.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      +.+++|.+.+.    +++|.|.++|+++..   ...++.+|.+||+..+|++ |...|+.++..-..............+
T Consensus       304 TI~rllfRFyD----~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi  378 (497)
T COG5265         304 TILRLLFRFYD----VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQI  378 (497)
T ss_pred             HHHHHHHHHhC----CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhh
Confidence            34455555555    589999999999854   3567889999999998765 888888765322110000000000111


Q ss_pred             HHHHHHcCCCccccCccC----cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         87 DALLKELGLLKCKNSVLN----VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~----~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ...++  .+.+..+..++    .|||||||||+|||+++.+|++++  +||-|+.+|..
T Consensus       379 ~~fi~--~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~--~deatsaldt~  433 (497)
T COG5265         379 HDFIQ--SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI--LDEATSALDTH  433 (497)
T ss_pred             hHHHH--hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE--EehhhhHhhhh
Confidence            22222  22333455553    699999999999999999999888  99988888854

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1.6e-15  Score=110.08  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEe-----cCc---cc----ccceeeEecCCCCC--CCCCC----HHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLE-----VEK---NL----MVKVSGFVPQHDLT--VDTLT----VHEHMTLMAR   70 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~-----i~~---~~----~~~~ig~v~Q~~~~--~~~lt----v~e~l~~~~~   70 (156)
                      .++++||++.+.|    ++|+|.|.-.+     +..   .+    ++..-|+|.|++.-  -...+    +-|-+.....
T Consensus        46 tTLL~~is~rl~p----~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~  121 (258)
T COG4107          46 TTLLKCISGRLTP----DAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA  121 (258)
T ss_pred             HhHHHHHhcccCC----CCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh
Confidence            3688888888885    89999987532     211   11    22334899998742  22223    3333322211


Q ss_pred             hhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         71 LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      -+  +    ...+..+.+.++.+.++. ..|..++.+|||||||+.|||-|.+.|+++.  +||||.|+|+-
T Consensus       122 RH--Y----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvf--MDEPTGGLDVS  185 (258)
T COG4107         122 RH--Y----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVF--MDEPTGGLDVS  185 (258)
T ss_pred             hh--h----hhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEE--ecCCCCCcchh
Confidence            11  1    134456778899999974 4588999999999999999999999999888  99999999954

>KOG0054|consensus

Probab=99.59  E-value=1.9e-15  Score=136.33  Aligned_cols=116  Identities=21%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |+.++|.++..+    .+|+|.+||.|+...   ..|.+++++||+|.+|.+ |++.|+--..++      ..    +.+
T Consensus      1181 SL~~aLFRl~e~----~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~------sD----~~I 1245 (1381)
T KOG0054|consen 1181 SLILALFRLVEP----AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY------SD----DEI 1245 (1381)
T ss_pred             HHHHHHHHhcCc----cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc------CH----HHH
Confidence            677888888885    899999999999764   468889999999999987 899988533211      11    223


Q ss_pred             HHHHHHcCCC-------ccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLL-------KCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~-------~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      =+++|.++|.       ..+|..+    .++|-||||-++|||||.++.+|++  |||.|+++|+.+
T Consensus      1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv--LDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV--LDEATASVDPET 1310 (1381)
T ss_pred             HHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE--EecccccCChHH
Confidence            3444444443       2234444    5799999999999999999999988  999999999764

>KOG0065|consensus

Probab=99.57  E-value=1.1e-15  Score=136.20  Aligned_cols=135  Identities=28%  Similarity=0.359  Sum_probs=108.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC-c---H-HHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-H---H-VERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~-~---~-~~~~   83 (156)
                      .++++.++|....... ..|+|.++|.+.+....+..++|++|+...++.+||+|.+.|.++.+.+... +   + .+..
T Consensus       155 ttllkal~g~~~~~~~-~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~  233 (1391)
T KOG0065|consen  155 TTLLKALAGKLDNFLK-SSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLA  233 (1391)
T ss_pred             HHHHHHHhCCCccccc-CCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHH
Confidence            5789999999887433 3459999999987654467789999999999999999999999887654221 1   1 1111


Q ss_pred             HHHHHHHHHcCCCccccCcc-----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         84 RTVDALLKELGLLKCKNSVL-----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~-----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ...+.+++.+||+++.|..+     +..|||||+||++|-+++.+++++.  +||+|+|+|..+++.+
T Consensus       234 ~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~--~De~t~GLDSsTal~i  299 (1391)
T KOG0065|consen  234 AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF--WDEITRGLDSSTAFQI  299 (1391)
T ss_pred             HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee--eecccccccHHHHHHH
Confidence            24568899999998776665     6899999999999999999999888  9999999998877654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.55  E-value=8.7e-15  Score=113.19  Aligned_cols=85  Identities=21%  Similarity=0.230  Sum_probs=66.3

Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcC---
Q psy16753         48 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQD---  123 (156)
Q Consensus        48 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~---  123 (156)
                      |..++...+..+|+.|++.|.....         ...+..++++.++|.. ..++++.+|||||+||+.||++|+.+   
T Consensus       120 ~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~  190 (261)
T cd03271         120 YKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTG  190 (261)
T ss_pred             cCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCC
Confidence            3344444456789999887765331         1235668899999987 57999999999999999999999996   


Q ss_pred             CCeeEEecCCCCCCCCchhh
Q psy16753        124 CSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       124 p~ill~~~Dep~~g~~~~~~  143 (156)
                      |+++|  +||||+|+|+...
T Consensus       191 p~lll--LDEPtsgLD~~~~  208 (261)
T cd03271         191 KTLYI--LDEPTTGLHFHDV  208 (261)
T ss_pred             CcEEE--EECCCCCCCHHHH
Confidence            68887  9999999997643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.55  E-value=2e-14  Score=120.57  Aligned_cols=112  Identities=22%  Similarity=0.193  Sum_probs=86.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|.+.|    .+|+|.+.-.        -.+||+.|+.. ..+..|+.+++.-...         ......++
T Consensus       362 STLlk~l~g~~~~----~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r  420 (530)
T COG0488         362 STLLKLLAGELGP----LSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVR  420 (530)
T ss_pred             HHHHHHHhhhccc----CCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHH
Confidence            3677888887775    6999986332        23799999973 3467788887653221         01145688


Q ss_pred             HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+..|++. +...+++..||||||.|+.+|+.++.+|.+||  ||||||-||..+.
T Consensus       421 ~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi--LDEPTNhLDi~s~  475 (530)
T COG0488         421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL--LDEPTNHLDIESL  475 (530)
T ss_pred             HHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE--EcCCCccCCHHHH
Confidence            999999996 44588999999999999999999999999888  9999999997643

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.54  E-value=1.5e-14  Score=118.24  Aligned_cols=130  Identities=21%  Similarity=0.230  Sum_probs=101.4

Q ss_pred             HHHHHhhhhhcCCCCcceEEEECCEec-Ccc---c-ccceeeEecCCC---CCCCCCCHHHHHHHHHHhh---ccc-CCc
Q psy16753         11 GIHLLGQRVVHELSDVDGQILLNGLEV-EKN---L-MVKVSGFVPQHD---LTVDTLTVHEHMTLMARLK---MDR-NLH   78 (156)
Q Consensus        11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i-~~~---~-~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~---~~~-~~~   78 (156)
                      ++..|+|+..+    .+|+|.++|+++ ...   . .+..++|+|++.   .+.+.+|+.||+.+.....   ..+ ...
T Consensus       300 L~eaisGlr~~----~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~  375 (501)
T COG3845         300 LVEAISGLRKP----ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD  375 (501)
T ss_pred             HHHHHhCCCcc----CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccC
Confidence            56788888865    579999999997 221   2 234579999984   5678999999997654221   111 245


Q ss_pred             HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      .....+.+.++++.|++. .....+++.||||.+||+-+||=+..+|+++|  ...||+|+|.-++-+|
T Consensus       376 ~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI--~~qPTrGLDvgA~~~I  442 (501)
T COG3845         376 RRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI--AAQPTRGLDVGAIEFI  442 (501)
T ss_pred             HHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEE--EcCCCccccHHHHHHH
Confidence            667778899999999997 34577789999999999999999999999888  9999999997766544

>PLN03073 ABC transporter F family; Provisional

Probab=99.54  E-value=6.5e-15  Score=127.70  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...++.++++.+|+. +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.+.
T Consensus       320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLl--LDEPt~~LD~~~~  380 (718)
T PLN03073        320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLL--LDEPTNHLDLHAV  380 (718)
T ss_pred             HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence            345788899999996 45688999999999999999999999999888  9999999998754

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.53  E-value=1.7e-15  Score=116.48  Aligned_cols=128  Identities=16%  Similarity=0.112  Sum_probs=85.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCE-ecCc-----ccccceeeEecCCCC---------CCCCCCHHHHHHHHHHhhcc
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGL-EVEK-----NLMVKVSGFVPQHDL---------TVDTLTVHEHMTLMARLKMD   74 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~-~i~~-----~~~~~~ig~v~Q~~~---------~~~~ltv~e~l~~~~~~~~~   74 (156)
                      +++++|++++.+   ...|++.+.|. ++-.     ......+++++|++.         ..+.+++.+++.........
T Consensus        40 tll~Ai~~ll~~---~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~  116 (251)
T cd03273          40 NILDAICFVLGI---TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYL  116 (251)
T ss_pred             HHHHHHHHHhcc---cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEE
Confidence            567777777764   13568888776 3311     112346788999852         34566777666433211110


Q ss_pred             cCCcHHHHHHHHHHHHHHcCCC--------------------ccccCccCcCChHHHHHHHHHHHHh----cCCCeeEEe
Q psy16753         75 RNLHHVERARTVDALLKELGLL--------------------KCKNSVLNVLSGGERKRVALAVQVS----QDCSRVVKI  130 (156)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~L~--------------------~~~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~  130 (156)
                      .. ......+++.++++.+++.                    +..++++.+||+|||||++||+|++    .+|+++|  
T Consensus       117 in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~ill--  193 (251)
T cd03273         117 IN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYI--  193 (251)
T ss_pred             EC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEE--
Confidence            00 1112346788899999986                    3346789999999999999999998    5779887  


Q ss_pred             cCCCCCCCCchhh
Q psy16753        131 TDSQPRGKWPISA  143 (156)
Q Consensus       131 ~Dep~~g~~~~~~  143 (156)
                      +||||+|+|+.+.
T Consensus       194 lDEPt~~ld~~~~  206 (251)
T cd03273         194 LDEVDAALDLSHT  206 (251)
T ss_pred             EeCCCcCCCHHHH
Confidence            9999999997644

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=6e-14  Score=106.16  Aligned_cols=114  Identities=16%  Similarity=0.074  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|.+.    |++|+|.++|.-..-..    +     ...+-+.+|.+||+.+...+.   ++..++..+++++
T Consensus        67 STLlkliaGi~~----Pt~G~v~v~G~v~~li~----l-----g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~e  130 (249)
T COG1134          67 STLLKLIAGIYK----PTSGKVKVTGKVAPLIE----L-----GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDE  130 (249)
T ss_pred             HHHHHHHhCccC----CCCceEEEcceEehhhh----c-----ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHH
Confidence            367888888888    49999999998543211    1     122346789999998876553   4567788889999


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP  140 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~  140 (156)
                      +++..+|.+..|++++.+|.||+-|+++|.|...+|+++|  +||-.+--|+
T Consensus       131 IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILl--lDEvlavGD~  180 (249)
T COG1134         131 IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILL--LDEVLAVGDA  180 (249)
T ss_pred             HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEE--EehhhhcCCH
Confidence            9999999999999999999999999999999999999998  9995555554

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.52  E-value=1.6e-14  Score=110.24  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             EEEECCEec----C--cccccceeeEecCCCCCCC-CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccC
Q psy16753         29 QILLNGLEV----E--KNLMVKVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS  101 (156)
Q Consensus        29 ~I~~~G~~i----~--~~~~~~~ig~v~Q~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~  101 (156)
                      +|.|++.+.    .  ....++.+++++|+..+++ ..+..+...+......... ..... ....++.+.+++.+..++
T Consensus        77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~-~~~~~-~~qg~i~~l~~l~~~~~~  154 (243)
T cd03272          77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRS-NPYYI-VPQGKINSLTNMKQDEQQ  154 (243)
T ss_pred             EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCC-CCcEE-EEcCchHHhhhccccccc
Confidence            666666321    1  1234566899998877765 3566665544433221110 00000 001123344556666778


Q ss_pred             ccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchhh
Q psy16753        102 VLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.+||+|||||++||+|++.    +|+++|  +||||+|+||.+.
T Consensus       155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~ill--lDEp~~~ld~~~~  198 (243)
T cd03272         155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYL--FDEIDAALDAQYR  198 (243)
T ss_pred             cccccCHHHHHHHHHHHHHHHhccCCCCEEE--EECCccCCCHHHH
Confidence            899999999999999999973    578887  9999999998743

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.46  E-value=8.1e-14  Score=113.43  Aligned_cols=114  Identities=19%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|+.++|+|.+.|    ++|.    ..+       -.++|=||....-...||.+.+.-......       .....-.+
T Consensus       381 TTFvk~LAG~ikP----deg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~-------~~s~~~~e  438 (591)
T COG1245         381 TTFVKLLAGVIKP----DEGS----EED-------LKVSYKPQYISPDYDGTVEDLLRSAIRSAF-------GSSYFKTE  438 (591)
T ss_pred             HHHHHHHhccccC----CCCC----Ccc-------ceEeecceeecCCCCCcHHHHHHHhhhhhc-------ccchhHHh
Confidence            3677888888885    7886    222       236788888666567799887654322211       11223457


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      +++-++|++..++++.+|||||.|||+||.||..++++++  ||||++=||+-..+.+
T Consensus       439 i~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl--lDEPSA~LDvEqR~~v  494 (591)
T COG1245         439 IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL--LDEPSAYLDVEQRIIV  494 (591)
T ss_pred             hcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEE--ecCchhhccHHHHHHH
Confidence            7899999999999999999999999999999999999999  9999999997655543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.42  E-value=2.7e-13  Score=102.87  Aligned_cols=54  Identities=30%  Similarity=0.352  Sum_probs=48.6

Q ss_pred             HHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~  142 (156)
                      .+.++.+++.+ ..++++.+||||||||++||+|++.+|  +++|  +||||+|+|+.+
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll--lDEPt~gLD~~~  174 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV--LDEPSIGLHPRD  174 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE--EeCCccCCCHHH
Confidence            56899999986 479999999999999999999999998  5887  999999999764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.38  E-value=5.9e-13  Score=112.23  Aligned_cols=113  Identities=21%  Similarity=0.162  Sum_probs=84.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|+-+-    -+|+|.+-        ....+-|+||.+.+... |.+|.+.+.....       ....+.+.+
T Consensus       433 TsLlRaiaGLWP~----g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~-------~~~d~~l~~  492 (604)
T COG4178         433 TSLLRALAGLWPW----GSGRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAP-------DFSDAELVA  492 (604)
T ss_pred             HHHHHHHhccCcc----CCCceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC-------CCChHHHHH
Confidence            3788999999885    36776542        12236799999987655 9999887543211       123356778


Q ss_pred             HHHHcCCCccccCc------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSV------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++.+++|.+..++.      -+.||+|||||+++||.+.++|++++  |||-|+++|+.+.
T Consensus       493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~--LDEATsALDe~~e  551 (604)
T COG4178         493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVF--LDEATSALDEETE  551 (604)
T ss_pred             HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEE--EecchhccChHHH
Confidence            89999997544322      25799999999999999999999998  9999999997743

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.36  E-value=3.7e-13  Score=100.63  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=68.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC-----CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-----TVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~-----~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      |++++|.....+...+.+|.+..+...+.....+..+++++|+..     ....+++.+++.+..             ..
T Consensus        37 TLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~-------------~~  103 (204)
T cd03240          37 TIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCH-------------QG  103 (204)
T ss_pred             HHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeec-------------hH
Confidence            445555322223222466766522222232333556888888872     233446666664320             11


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHH------HHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKR------VALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqr------v~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.+         ++.+++||+||+||      +++|+|++.+|+++|  +|||++|+|+....
T Consensus       104 ~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill--lDEP~~~LD~~~~~  158 (204)
T cd03240         104 ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA--LDEPTTNLDEENIE  158 (204)
T ss_pred             HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE--EcCCccccCHHHHH
Confidence            122222         67889999999996      788999999999988  99999999987544

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.36  E-value=9.2e-14  Score=100.93  Aligned_cols=120  Identities=19%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++-.++|++.     .+|+|.++|.++...   ...+..+|+.|+......+.|+.++...    .    +.+.....+
T Consensus        40 TLLA~lAGm~~-----~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i  106 (248)
T COG4138          40 TLLARMAGMTS-----GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELL  106 (248)
T ss_pred             HHHHHHhCCCC-----CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHH
Confidence            45556667666     599999999998643   4467789999988776677887776532    1    223455678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh-----cCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS-----QDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~-----~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++...+++.+.+.+.+.+|||||=|||-+|....     .+|.-=+|+||||.+++|...
T Consensus       107 ~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ  167 (248)
T COG4138         107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ  167 (248)
T ss_pred             HHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHH
Confidence            88899999999999999999999999999997654     355555566999999999763

>KOG0927|consensus

Probab=99.27  E-value=6.5e-12  Score=103.99  Aligned_cols=109  Identities=16%  Similarity=0.083  Sum_probs=76.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      ||+|+++|.+.    |+.|.|.-.-...        +++..|+..  +-...++.+++.-.   .     ......+.++
T Consensus       431 TLlKl~~gdl~----p~~G~vs~~~H~~--------~~~y~Qh~~e~ldl~~s~le~~~~~---~-----~~~~~~e~~r  490 (614)
T KOG0927|consen  431 TLLKLITGDLQ----PTIGMVSRHSHNK--------LPRYNQHLAEQLDLDKSSLEFMMPK---F-----PDEKELEEMR  490 (614)
T ss_pred             hhHHHHhhccc----ccccccccccccc--------chhhhhhhHhhcCcchhHHHHHHHh---c-----cccchHHHHH
Confidence            56677777777    4888886433221        234444422  22344555554321   1     1123446788


Q ss_pred             HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753         88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP  140 (156)
Q Consensus        88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~  140 (156)
                      .++.++||. +..+.++++||.|||.||.+|+..+..|.++|  |||||+|+|-
T Consensus       491 ~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLl--LDEPtnhLDi  542 (614)
T KOG0927|consen  491 SILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLL--LDEPTNHLDI  542 (614)
T ss_pred             HHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEE--ecCCCcCCCc
Confidence            999999998 56788899999999999999999999999888  9999999983

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.25  E-value=1.6e-11  Score=113.79  Aligned_cols=86  Identities=21%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHh---cCCCeeEEe
Q psy16753         55 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVS---QDCSRVVKI  130 (156)
Q Consensus        55 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~---~~p~ill~~  130 (156)
                      .+...|+.|++.+...-............+++ +.++.+++... .++++.+|||||+||+.||+||+   .+|+++|  
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLI--  835 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYV--  835 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEE--
Confidence            45677888988765432111111223344556 58899999876 79999999999999999999998   6999888  


Q ss_pred             cCCCCCCCCchhh
Q psy16753        131 TDSQPRGKWPISA  143 (156)
Q Consensus       131 ~Dep~~g~~~~~~  143 (156)
                      |||||+|+|+.+.
T Consensus       836 LDEPTsGLD~~~~  848 (1809)
T PRK00635        836 LDEPTTGLHTHDI  848 (1809)
T ss_pred             EeCCCCCCCHHHH
Confidence            9999999997643

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.23  E-value=2.1e-11  Score=108.22  Aligned_cols=85  Identities=25%  Similarity=0.331  Sum_probs=61.0

Q ss_pred             CCCCCHHHHHHHHHHhhcccC---C---cHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--Ce
Q psy16753         56 VDTLTVHEHMTLMARLKMDRN---L---HHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SR  126 (156)
Q Consensus        56 ~~~ltv~e~l~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~i  126 (156)
                      +..+++.+.+.|.........   .   -..+..+++ +.++.+||... .++++.+|||||+||+.||+||+.+|  ++
T Consensus       434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l  512 (943)
T PRK00349        434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL  512 (943)
T ss_pred             HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence            346788887777543321100   0   001223344 36888999765 79999999999999999999999997  66


Q ss_pred             eEEecCCCCCCCCchhh
Q psy16753        127 VVKITDSQPRGKWPISA  143 (156)
Q Consensus       127 ll~~~Dep~~g~~~~~~  143 (156)
                      +|  |||||+||||..+
T Consensus       513 lI--LDEPtagLd~~~~  527 (943)
T PRK00349        513 YV--LDEPSIGLHQRDN  527 (943)
T ss_pred             EE--ecCCccCCCHHHH
Confidence            66  9999999998743

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.22  E-value=1.3e-11  Score=91.88  Aligned_cols=53  Identities=17%  Similarity=0.100  Sum_probs=45.9

Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCch
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+.++++.   .+..++++++||+|||||++||+|+    +.+|+++|  +|||++|+|+.
T Consensus        91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~ill--lDEP~~glD~~  147 (198)
T cd03276          91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRC--LDEFDVFMDMV  147 (198)
T ss_pred             HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEE--ecCcccccCHH
Confidence            456667766   5667889999999999999999999    58999998  99999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.20  E-value=4.3e-11  Score=106.32  Aligned_cols=75  Identities=24%  Similarity=0.266  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCC
Q psy16753         58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDS  133 (156)
Q Consensus        58 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~De  133 (156)
                      ++|+.|++.|.....        .. .+..+.++.++|.. ..++++.+|||||+||+.||++|+.+|   +++|  |||
T Consensus       791 ~ltv~E~l~~f~~~~--------~i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llI--LDE  859 (943)
T PRK00349        791 DMTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYI--LDE  859 (943)
T ss_pred             cCcHHHHHHHHHhch--------hh-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEE--EEC
Confidence            467888877654321        11 23457899999976 478999999999999999999999999   8777  999


Q ss_pred             CCCCCCchhh
Q psy16753        134 QPRGKWPISA  143 (156)
Q Consensus       134 p~~g~~~~~~  143 (156)
                      ||+|+|+...
T Consensus       860 PtsGLD~~~~  869 (943)
T PRK00349        860 PTTGLHFEDI  869 (943)
T ss_pred             CCCCCCHHHH
Confidence            9999997643

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.18  E-value=5.8e-11  Score=105.29  Aligned_cols=54  Identities=28%  Similarity=0.335  Sum_probs=46.2

Q ss_pred             HHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~~  143 (156)
                      +.+..++|... .++.+.+|||||+||+.||++|+.+|  +++|  |||||+||||.++
T Consensus       469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llI--LDEPtagLD~~~~  525 (924)
T TIGR00630       469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYV--LDEPSIGLHQRDN  525 (924)
T ss_pred             HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEE--EcCCccCCCHHHH
Confidence            34778888765 68999999999999999999999987  6665  9999999998743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.16  E-value=6.6e-12  Score=93.84  Aligned_cols=60  Identities=20%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCCCcc---ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKC---KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~---~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++-+++.++|+.+.   ...++.+|.-||.|||+||+|++.+|+++|  .||||+.++|+++.
T Consensus       133 KrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLI--ADEPTN~~e~~Tq~  195 (330)
T COG4170         133 KRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLI--ADEPTNSMEPTTQA  195 (330)
T ss_pred             HHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEe--ccCCCcccCccHHH
Confidence            4567799999999754   357789999999999999999999999887  99999999998653

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.14  E-value=1e-10  Score=103.71  Aligned_cols=76  Identities=22%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhc---CCCeeEEecC
Q psy16753         57 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQ---DCSRVVKITD  132 (156)
Q Consensus        57 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~---~p~ill~~~D  132 (156)
                      .++|+.|.+.|.....        .. .+..++++.++|.. ..++++.+|||||+||+.||++|+.   +|+++|  ||
T Consensus       788 l~~tv~e~~~f~~~~~--------~i-~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI--LD  856 (924)
T TIGR00630       788 LDMTVEEAYEFFEAVP--------SI-SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYI--LD  856 (924)
T ss_pred             hCCcHHHHHHHHHhcc--------ch-hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEE--EE
Confidence            4567777776654321        01 13457899999975 4689999999999999999999997   488887  99


Q ss_pred             CCCCCCCchhh
Q psy16753        133 SQPRGKWPISA  143 (156)
Q Consensus       133 ep~~g~~~~~~  143 (156)
                      |||+|+|+...
T Consensus       857 EPtsgLD~~~~  867 (924)
T TIGR00630       857 EPTTGLHFDDI  867 (924)
T ss_pred             CCCCCCCHHHH
Confidence            99999998743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.13  E-value=2e-11  Score=91.84  Aligned_cols=98  Identities=12%  Similarity=-0.013  Sum_probs=66.1

Q ss_pred             ceeeEecCCCCCCCCCCHHHHHHHHHHhhc-----ccCCcHHHHHH--HHHHHHHHcCCCccccCccCcCChHHHHHHHH
Q psy16753         44 KVSGFVPQHDLTVDTLTVHEHMTLMARLKM-----DRNLHHVERAR--TVDALLKELGLLKCKNSVLNVLSGGERKRVAL  116 (156)
Q Consensus        44 ~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~L  116 (156)
                      ..+++++++...++.+++.+...+......     ..+........  ...++.+.+++.+..++++..||+|||||++|
T Consensus        59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~l  138 (212)
T cd03274          59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSL  138 (212)
T ss_pred             hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHH
Confidence            457888888777777777665443321100     00110000000  12466678888888888999999999999999


Q ss_pred             HHHHhc----CCCeeEEecCCCCCCCCchhh
Q psy16753        117 AVQVSQ----DCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       117 A~AL~~----~p~ill~~~Dep~~g~~~~~~  143 (156)
                      |+|++.    +|++++  +||||+|+||.+.
T Consensus       139 a~al~~~~~~~p~ili--lDEPt~gLD~~~~  167 (212)
T cd03274         139 ALVFALHHYKPTPLYV--MDEIDAALDFRNV  167 (212)
T ss_pred             HHHHHhcccCCCCEEE--EcCCCcCCCHHHH
Confidence            999974    478887  9999999998744

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0060|consensus

Probab=99.11  E-value=1.1e-10  Score=97.36  Aligned_cols=118  Identities=17%  Similarity=0.113  Sum_probs=81.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|+++++.|+-+.    .+|++..-...-.     ..+-|+||.|.+..+ |.++.+.+....-.  ...+....+++..
T Consensus       475 tSLlRvlggLWp~----~~G~l~k~~~~~~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~d~~i~r  542 (659)
T KOG0060|consen  475 TSLLRVLGGLWPS----TGGKLTKPTDGGP-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSASDEDILR  542 (659)
T ss_pred             hHHHHHHhccccc----CCCeEEecccCCC-----CceEEecCCCCcccc-chhheeeccCcccc--ccccCCCHHHHHH
Confidence            3788888888884    7898875433211     236799999987655 99999877521100  0111122345666


Q ss_pred             HHHHcCCCccc------cCcc-----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753         89 LLKELGLLKCK------NSVL-----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP  140 (156)
Q Consensus        89 ~l~~~~L~~~~------~~~~-----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~  140 (156)
                      .++.+++.+..      |+.+     ..||+|||||++.||-+.++|++-+  |||.|.+++.
T Consensus       543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~Ai--LDE~TSAv~~  603 (659)
T KOG0060|consen  543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAI--LDECTSAVTE  603 (659)
T ss_pred             HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEE--eechhhhccH
Confidence            66666664322      3222     4699999999999999999999998  9999988874

>KOG0927|consensus

Probab=99.10  E-value=9.9e-11  Score=97.07  Aligned_cols=60  Identities=25%  Similarity=0.240  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ....++.+++..++.. +..++.+.+||||+|+|++|||+|..+|++++  |||||+|||+.+
T Consensus       196 ~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLL--LDEPtnhLDleA  256 (614)
T KOG0927|consen  196 TFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL--LDEPTNHLDLEA  256 (614)
T ss_pred             hHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEE--ecCCccCCCHHH
Confidence            3444566677777664 56789999999999999999999999999888  999999999764

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.09  E-value=6.8e-11  Score=88.82  Aligned_cols=51  Identities=18%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             HHHcCCCccccCccCcCChHHHHHHHHHHHHhc----------CCCeeEEecCCCCCCCCchh
Q psy16753         90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ----------DCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~----------~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++..++.+..++++.+||+||+||++||+|++.          +|+++|  +||||+|+|+.+
T Consensus       108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll--lDEp~~~lD~~~  168 (213)
T cd03279         108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF--IDEGFGTLDPEA  168 (213)
T ss_pred             hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE--EeCCcccCCHHH
Confidence            444556667788999999999999999999985          457776  999999999863

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0062|consensus

Probab=99.07  E-value=2.4e-10  Score=94.34  Aligned_cols=110  Identities=17%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             HHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHH
Q psy16753         11 GIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL   90 (156)
Q Consensus        11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l   90 (156)
                      .+|++.|-..    |++|.+.+        ..+.+++|.+|+..-+....+...- +....+  .+    ...+.+++-+
T Consensus       406 ~lKi~~~~l~----~~rgi~~~--------~~r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~--pG----~~~ee~r~hl  466 (582)
T KOG0062|consen  406 LLKILKGDLT----PTRGIVGR--------HPRLRIKYFAQHHVDFLDKNVNAVD-FMEKSF--PG----KTEEEIRRHL  466 (582)
T ss_pred             HHHHHhccCC----cccceeee--------cccceecchhHhhhhHHHHHhHHHH-HHHHhC--CC----CCHHHHHHHH
Confidence            3455555444    46776543        2256689999987655444443322 222222  12    2456788889


Q ss_pred             HHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         91 KELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        91 ~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..||+. +...+.+..||||||-||++|.+...+|-++|  |||||+-||-.
T Consensus       467 ~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV--LDEPTNhLD~d  516 (582)
T KOG0062|consen  467 GSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV--LDEPTNHLDRD  516 (582)
T ss_pred             HhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE--ecCCCccccHH
Confidence            999997 44566689999999999999999999999888  99999999854

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.02  E-value=2.8e-10  Score=87.33  Aligned_cols=56  Identities=21%  Similarity=0.232  Sum_probs=44.5

Q ss_pred             HHHHHHHHHcCCCcc----------------------ccCccCcCChHHHHHHHHHHHHhcC----CCeeEEecCCCCCC
Q psy16753         84 RTVDALLKELGLLKC----------------------KNSVLNVLSGGERKRVALAVQVSQD----CSRVVKITDSQPRG  137 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~----------------------~~~~~~~LSgGerqrv~LA~AL~~~----p~ill~~~Dep~~g  137 (156)
                      +.++++++.+++...                      .++++.+||+|||||++||+|++.+    |+++|  +||||+|
T Consensus       112 ~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll--lDEPt~~  189 (247)
T cd03275         112 KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV--LDEVDAA  189 (247)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE--Eeccccc
Confidence            345677788887421                      2344589999999999999999864    88887  9999999


Q ss_pred             CCch
Q psy16753        138 KWPI  141 (156)
Q Consensus       138 ~~~~  141 (156)
                      +|+.
T Consensus       190 LD~~  193 (247)
T cd03275         190 LDNT  193 (247)
T ss_pred             CCHH
Confidence            9975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.01  E-value=3e-10  Score=105.62  Aligned_cols=55  Identities=31%  Similarity=0.443  Sum_probs=47.2

Q ss_pred             HHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~~~  144 (156)
                      +.+..+++... .++.+.+|||||+||+.||+||+.+|  +++|  |||||+|||+.++.
T Consensus       458 ~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLI--LDEPTagLD~~~~~  515 (1809)
T PRK00635        458 SILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYI--LDEPSIGLHPQDTH  515 (1809)
T ss_pred             HHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEE--EECCccCCCHHHHH
Confidence            34567788765 68999999999999999999999999  6776  99999999987543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.89  E-value=1e-09  Score=89.88  Aligned_cols=60  Identities=27%  Similarity=0.271  Sum_probs=55.0

Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ..+++++.++|.+..++.+.+|||||.||++||.|++.++++++  +|||++=||....+.+
T Consensus       193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~--FDEpsSyLDi~qRl~~  252 (591)
T COG1245         193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYF--FDEPSSYLDIRQRLNA  252 (591)
T ss_pred             cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEE--EcCCcccccHHHHHHH
Confidence            57789999999999999999999999999999999999999998  9999999997765543

>KOG0066|consensus

Probab=98.82  E-value=7.2e-09  Score=84.94  Aligned_cols=108  Identities=22%  Similarity=0.156  Sum_probs=74.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .+++++|.|-+.    |++|+..        ...+-+||+..|+..  +-..-|..|++.-..      +++    ...+
T Consensus       627 STlLkLL~Gkl~----P~~GE~R--------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlp----yq~A  684 (807)
T KOG0066|consen  627 STLLKLLIGKLD----PNDGELR--------KNHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLP----YQEA  684 (807)
T ss_pred             HHHHHHHhcCCC----CCcchhh--------ccceeeeechhhhhHHhhccccCHHHHHHHhc------CCC----hHHH
Confidence            466777777766    4788654        122445788877743  223345555543221      111    2356


Q ss_pred             HHHHHHcCCCcccc-CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753         87 DALLKELGLLKCKN-SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP  140 (156)
Q Consensus        87 ~~~l~~~~L~~~~~-~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~  140 (156)
                      +..+-.|||....+ -.+.+|||||+-||++|---+..|+++|  |||||+.+|-
T Consensus       685 RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlI--LDEPTNNLDI  737 (807)
T KOG0066|consen  685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLI--LDEPTNNLDI  737 (807)
T ss_pred             HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEE--ecCCCCCcch
Confidence            67789999975553 3568999999999999999999999887  9999999984

>KOG0062|consensus

Probab=98.81  E-value=5.1e-09  Score=86.64  Aligned_cols=54  Identities=26%  Similarity=0.249  Sum_probs=47.5

Q ss_pred             HHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         86 VDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        86 ~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+++.-+|+.+ ...+++++||||=|.|++|||||..+|++|+  |||||+-||..
T Consensus       178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL--LDEPTNhLDv~  232 (582)
T KOG0062|consen  178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL--LDEPTNHLDVV  232 (582)
T ss_pred             HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe--ecCCcccchhH
Confidence            334888999975 4578889999999999999999999999998  99999999865

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.79  E-value=2.5e-09  Score=86.41  Aligned_cols=115  Identities=23%  Similarity=0.219  Sum_probs=72.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||+++++-+..+++.|++|+|++||.++..+   ..|+..+-+|.+..+|+.+-            ...+   +...+.+
T Consensus       360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~---~as~q~i  424 (546)
T COG4615         360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEG---KASPQLI  424 (546)
T ss_pred             CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCcc---CCChHHH
Confidence            3444444444444446999999999998754   33444555555544444321            1111   1122345


Q ss_pred             HHHHHHcCCCcc---ccC--ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         87 DALLKELGLLKC---KNS--VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        87 ~~~l~~~~L~~~---~~~--~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +..++++.+.+.   .|.  ..-+||.|||+|+++..|++-+-++++  +||=-+--||.
T Consensus       425 ~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv--~DEWAADQDPa  482 (546)
T COG4615         425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV--LDEWAADQDPA  482 (546)
T ss_pred             HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE--eehhhccCChH
Confidence            555666655432   122  235799999999999999999999988  99977777776

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.75  E-value=6e-09  Score=78.48  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=35.7

Q ss_pred             cccCccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCchh
Q psy16753         98 CKNSVLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        98 ~~~~~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+..+.+||+||||++.++.++    +.+|+++|  +|||++|+|+..
T Consensus       119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~lll--lDEP~~~LD~~~  165 (213)
T cd03277         119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRV--VDEINQGMDPTN  165 (213)
T ss_pred             ccccchhhccccHHHHHHHHHHHHHHhccCCCEEE--EecccccCCHHH
Confidence            34667889999999998877554    58999887  999999999763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.69  E-value=1.5e-08  Score=74.25  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCchhh
Q psy16753        106 LSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       106 LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ||+||+||++||++++    .+|++++  +|||++|+|+...
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~lli--lDEp~~~LD~~~~  134 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYV--LDEIDAALDPTNR  134 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEE--EECCCCCCCHHHH
Confidence            9999999999999996    6899887  9999999997643

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0063|consensus

Probab=98.64  E-value=4.4e-08  Score=79.93  Aligned_cols=114  Identities=20%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             HHHHHHHhhhhhcCCCCcce-EEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDG-QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G-~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .+++++++|.+.|    ++| +|-.           -.++|=||....-..-|+++.+.--  .+.     .-.+...+.
T Consensus       381 TTfi~mlag~~~p----d~~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~k--Ir~-----ay~~pqF~~  438 (592)
T KOG0063|consen  381 TTFIRMLAGRLKP----DEGGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTK--IRD-----AYMHPQFVN  438 (592)
T ss_pred             hHHHHHHhcCCCC----CccCcccc-----------cceeccccccCccccchHHHHHHHH--hHh-----hhcCHHHHH
Confidence            4678888887775    343 2211           1245666665443445677654321  211     112234567


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      +.++-+.+++..|+.+.+|||||+||+++|.+|-..+++++  .|||.+=+|..+++.+
T Consensus       439 dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYl--iDEpsAylDSeQRi~A  495 (592)
T KOG0063|consen  439 DVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYL--IDEPSAYLDSEQRIIA  495 (592)
T ss_pred             hhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEE--ecCchhhcChHHHHHH
Confidence            88888889888999999999999999999999999999998  9999999998877654

>KOG0064|consensus

Probab=98.64  E-value=1.8e-08  Score=83.97  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHH---HhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA---RLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~---~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|.|+-+.    ..|...      .  +..+.+-|+||.|.+- .-|.+|.+.+..   .++. +++.    ....
T Consensus       523 SLfRILggLWPv----y~g~L~------~--P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~-kg~~----d~dL  584 (728)
T KOG0064|consen  523 SLFRILGGLWPV----YNGLLS------I--PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKR-KGYT----DQDL  584 (728)
T ss_pred             HHHHHHhccCcc----cCCeee------c--CCCcceEeccCCCccC-cCcccceeecCCcHHHHHh-cCCC----HHHH
Confidence            556666666553    233332      1  2234588999999875 557788776532   1211 1221    2234


Q ss_pred             HHHHHHcCCCccccCcc---------CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         87 DALLKELGLLKCKNSVL---------NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~---------~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+++.+.|++.+.+-.         ..||||||||++.||.+.++|+..+  |||-|+++.+.
T Consensus       585 ~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyal--LDEcTsAvsid  646 (728)
T KOG0064|consen  585 EAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYAL--LDECTSAVSID  646 (728)
T ss_pred             HHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhh--hhhhhcccccc
Confidence            55566666554332222         3599999999999999999999998  99988877543

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.59  E-value=4.4e-08  Score=83.04  Aligned_cols=49  Identities=20%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHh----------cCCCeeEEecCCCC-CCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS----------QDCSRVVKITDSQP-RGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~----------~~p~ill~~~Dep~-~g~~~~  141 (156)
                      ..++..|..   +..+..|||||+||++||+|++          .+|+++|  +|||| +|+|+.
T Consensus       454 ~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~li--lDEp~~~~ld~~  513 (562)
T PHA02562        454 ETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLI--LDEVFDGALDAE  513 (562)
T ss_pred             hHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEE--EecccCcccchh
Confidence            344444432   3467899999999999999987          5899887  99998 679976

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.58  E-value=4.6e-08  Score=76.28  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             CcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchh
Q psy16753        104 NVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..||+||+||+++|++++.    +|++++  +|||++|+|+..
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vll--lDEp~~~Ld~~~  209 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLI--FDEIDTGISGEV  209 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEE--EECCccCCCHHH
Confidence            3499999999999987654    999888  999999999773

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.51  E-value=7.6e-08  Score=69.34  Aligned_cols=37  Identities=32%  Similarity=0.337  Sum_probs=33.0

Q ss_pred             CcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchh
Q psy16753        104 NVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~  142 (156)
                      .+||+||+||+.+|++++.    +|++++  +|||++|+|+..
T Consensus        76 ~~lS~G~~~~~~la~~L~~~~~~~~~lll--lDEp~~gld~~~  116 (162)
T cd03227          76 LQLSGGEKELSALALILALASLKPRPLYI--LDEIDRGLDPRD  116 (162)
T ss_pred             eeccccHHHHHHHHHHHHhcCCCCCCEEE--EeCCCCCCCHHH
Confidence            4699999999999999987    678777  999999999874

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR00618 sbcc exonuclease SbcC

Probab=98.51  E-value=9.5e-08  Score=86.57  Aligned_cols=45  Identities=18%  Similarity=0.042  Sum_probs=39.0

Q ss_pred             CccccCccCcCChHHHHHHHHHHHHhc----------CCCeeEEecCCCCCCCCchh
Q psy16753         96 LKCKNSVLNVLSGGERKRVALAVQVSQ----------DCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        96 ~~~~~~~~~~LSgGerqrv~LA~AL~~----------~p~ill~~~Dep~~g~~~~~  142 (156)
                      ....++++.+|||||++|++||+||+.          +|++++  +||||+|+|+.+
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~--lDEp~~~LD~~~  995 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLF--IDEGFGSLDEDS  995 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEE--ecCCCCCCCHHH
Confidence            345567889999999999999999985          788887  999999999774

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.48  E-value=3.5e-07  Score=79.50  Aligned_cols=72  Identities=25%  Similarity=0.291  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCC
Q psy16753         58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDS  133 (156)
Q Consensus        58 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~De  133 (156)
                      .+||.|-..|+....        .. .+.-+.+..+||.- .+.++..+|||||-||+-||.-|..+.   .++|  |||
T Consensus       783 ~MTveEA~~FF~~~p--------~I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYi--LDE  851 (935)
T COG0178         783 DMTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYI--LDE  851 (935)
T ss_pred             hccHHHHHHHHhcch--------HH-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEE--eCC
Confidence            567777666554211        12 23446677899974 358899999999999999999999888   8888  999


Q ss_pred             CCCCCCc
Q psy16753        134 QPRGKWP  140 (156)
Q Consensus       134 p~~g~~~  140 (156)
                      ||.||+.
T Consensus       852 PTTGLH~  858 (935)
T COG0178         852 PTTGLHF  858 (935)
T ss_pred             CCCCCCH
Confidence            9999963

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.42  E-value=2e-07  Score=84.50  Aligned_cols=41  Identities=22%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             cCccCcCChHHHHHHHHHHHHhc--------CCCeeEEecCCCCCCCCchh
Q psy16753        100 NSVLNVLSGGERKRVALAVQVSQ--------DCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~~--------~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++++..|||||+++++||+||+.        +|++++  +||||+|+|+.+
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~--lDEp~~~lD~~~  992 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLF--LDEGFGTLDSET  992 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEE--EeCCCCcCCHHH
Confidence            47889999999999999999995        889887  999999999875

>TIGR00634 recN DNA repair protein RecN

Probab=98.41  E-value=1.7e-07  Score=79.89  Aligned_cols=38  Identities=34%  Similarity=0.389  Sum_probs=32.9

Q ss_pred             CcCChHHHHHHHHHHHHhcC----CCeeEEecCCCCCCCCchhh
Q psy16753        104 NVLSGGERKRVALAVQVSQD----CSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~~~----p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+||||+||++||++++..    |+++|  +|||++|+|+.++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~li--lDEp~~gld~~~~  480 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLI--FDEVDVGVSGETA  480 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEE--EECCCCCCCHHHH
Confidence            46899999999999999985    57776  9999999997643

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10869 recombination and repair protein; Provisional

Probab=98.37  E-value=2.6e-07  Score=78.60  Aligned_cols=36  Identities=36%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             cCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchh
Q psy16753        105 VLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       105 ~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~  142 (156)
                      .+||||+||++||++++.    +|+++|  +|||++|+|+.+
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li--~DEpd~gld~~~  469 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALI--FDEVDVGISGPT  469 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEE--EECCCCCCCHHH
Confidence            479999999999999997    578777  999999999653

>TIGR00606 rad50 rad50

Probab=98.36  E-value=3.4e-07  Score=84.69  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             ccCcCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753        102 VLNVLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       102 ~~~~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+.||+||+|      |++||+|++.+|++++  |||||+|+|+..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~--lDEPt~~lD~~~ 1240 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIA--LDEPTTNLDREN 1240 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEE--eeCCcccCCHHH
Confidence            44789999999      9999999999999887  999999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=98.36  E-value=9.2e-07  Score=79.02  Aligned_cols=40  Identities=28%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             CccCcCChHHHHHHHHH------HHHhcCCCeeEEecCCCCCCCCchh
Q psy16753        101 SVLNVLSGGERKRVALA------VQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       101 ~~~~~LSgGerqrv~LA------~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+..|||||+++++||      ++++.+|++++  +||||+|+|+..
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~li--lDEpt~~lD~~~  842 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLI--MDEPTAFLDEDR  842 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEE--EeCCCCcCCHHH
Confidence            45789999999999764      88999999877  999999999664

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.36  E-value=2.4e-07  Score=68.91  Aligned_cols=53  Identities=15%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++..++..+..+.....+|+||+|++.+++++ .+|++++  +|||++|+|+....
T Consensus        75 ~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~lll--lDEp~~glD~~~~~  127 (200)
T cd03280          75 IFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVL--LDELGSGTDPVEGA  127 (200)
T ss_pred             EEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEE--EcCCCCCCCHHHHH
Confidence            34455555566777889999999999999884 7899887  99999999987544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0066|consensus

Probab=98.35  E-value=2.3e-07  Score=76.29  Aligned_cols=60  Identities=22%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..++++++.-+|+++ ..+++...+|||-|.||+|||||...|.+++  |||||+-+|-.+.+
T Consensus       389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM--LDEPTNHLDLNAVI  449 (807)
T KOG0066|consen  389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM--LDEPTNHLDLNAVI  449 (807)
T ss_pred             hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee--ecCCccccccceee
Confidence            346778899899975 4578888999999999999999999999777  99999999977654

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.32  E-value=5.1e-07  Score=70.20  Aligned_cols=38  Identities=16%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             cCcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCchh
Q psy16753        103 LNVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       103 ~~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..-+|+||||++.+|++++         .+|+++|  +|||++++|+..
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~ill--lDEp~a~LD~~~  227 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLL--LDDVLAELDLGR  227 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEE--EcCcchhcCHHH
Confidence            3458999999999999985         7999887  999999999764

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.27  E-value=6.2e-07  Score=79.81  Aligned_cols=40  Identities=25%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             cCccCcCChHHHHH------HHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753        100 NSVLNVLSGGERKR------VALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       100 ~~~~~~LSgGerqr------v~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +.++..|||||+++      +++|++++.+|+++|  +||||+|+|+.
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~li--lDEp~~~lD~~  828 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLI--LDEPTPFLDEE  828 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEE--EeCCCcccCHH
Confidence            46778999999995      455567889999887  99999999975

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.26  E-value=6.4e-07  Score=81.21  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             ccCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCch
Q psy16753         99 KNSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        99 ~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+..+..|||||+++++||++++    .+|+++|  +|||++|+|+.
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~--lDE~~~~ld~~ 1127 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCI--LDEVDAPLDDA 1127 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEE--ecCccccccHH
Confidence            35677899999999999999985    6678887  99999999975

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.23  E-value=2.3e-06  Score=69.98  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             HHHHHHhhhhhcC----CCCcceEEEECCEecCcccccceeeEecCCCCC-CCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753         10 SGIHLLGQRVVHE----LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~----~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      +++++|+|.....    +.|++|.|.+--..        ..+.+|.+... |...|+.|++.-.          .. +..
T Consensus       424 tllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~----------tG-D~~  484 (593)
T COG2401         424 TLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK----------TG-DLN  484 (593)
T ss_pred             hHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc----------cC-chh
Confidence            5678888876652    66889988642211        23455655332 4455666665310          01 112


Q ss_pred             HHHHHHHHcCCCcc--ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKELGLLKC--KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~~L~~~--~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.+++++.|+.+.  .-.+..+||.|||.|+.||.+++..|.+++  .||=.+-+|+.++.
T Consensus       485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~--iDEF~AhLD~~TA~  544 (593)
T COG2401         485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL--IDEFAAHLDELTAV  544 (593)
T ss_pred             HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE--hhhhhhhcCHHHHH
Confidence            45688999999753  356678999999999999999999999888  99988889987654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.09  E-value=1.1e-06  Score=66.61  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=42.8

Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHH--hcCCCeeEEecCCC---CCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV--SQDCSRVVKITDSQ---PRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL--~~~p~ill~~~Dep---~~g~~~~~~  143 (156)
                      +++++..+++.+.   ....+|+|+++++.+++++  +.+|+++|  +|||   |+++|+.+.
T Consensus        73 ~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvL--LDEp~~gT~~lD~~~~  130 (222)
T cd03285          73 VDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLII--IDELGRGTSTYDGFGL  130 (222)
T ss_pred             cceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEE--EecCcCCCChHHHHHH
Confidence            4566777777643   3678999999999999999  89999887  9999   777887644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.07  E-value=2.3e-06  Score=77.85  Aligned_cols=40  Identities=20%  Similarity=0.101  Sum_probs=34.6

Q ss_pred             cCccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCch
Q psy16753        100 NSVLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~  141 (156)
                      .+.+..||||||++++||++++.    +|+++|  +|||++|+|+.
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~--lDE~~~~ld~~ 1112 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYA--FDEVDMFLDGV 1112 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEE--ecccccccCHH
Confidence            34567899999999999999985    678777  99999999976

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.00  E-value=4.5e-06  Score=77.50  Aligned_cols=43  Identities=19%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             ccCccCcCChHHHHHHH----HHHH--------HhcCCCeeEEecCCCCCCCCchhh
Q psy16753         99 KNSVLNVLSGGERKRVA----LAVQ--------VSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        99 ~~~~~~~LSgGerqrv~----LA~A--------L~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++.++.|||||||+++    +|++        +..+|++++  |||||+|+|+..+
T Consensus      1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lil--LDEp~a~lD~~~~ 1295 (1353)
T TIGR02680      1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLIL--LDEAFAGVDDNAR 1295 (1353)
T ss_pred             hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEE--EeCccccCCHHHH
Confidence            35557899999999997    5644        457999887  9999999998754

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK00064 recF recombination protein F; Reviewed

Probab=97.99  E-value=3.5e-06  Score=68.25  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=33.6

Q ss_pred             ccCcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCch
Q psy16753        102 VLNVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~  141 (156)
                      ....+|.||+|++.+|++++         .+|+++|  +|||++++|+.
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilL--lDd~~s~LD~~  316 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILL--LDDVASELDDG  316 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEE--EccchhhhCHH
Confidence            34679999999999999886         6899887  99999999975

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=97.97  E-value=3.6e-05  Score=67.31  Aligned_cols=52  Identities=29%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             HHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         90 LKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        90 l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +-.+||.-. +++...+|||||.||+-||..+-..--=++-+||||+.||++.
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqr  517 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQR  517 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChh
Confidence            444566533 4888999999999999999999888776777899999999875

>TIGR00611 recf recF protein

Probab=97.96  E-value=5.6e-06  Score=67.17  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             CcCChHHHHHHHHHHHHhc---------CCCeeEEecCCCCCCCCch
Q psy16753        104 NVLSGGERKRVALAVQVSQ---------DCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~~---------~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+|.||+|++.||.+++.         +|+++|  +|||++++|+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilL--LDD~~seLD~~  318 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILL--LDDVASELDDQ  318 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEE--EcCchhccCHH
Confidence            3689999999999999999         999888  99999999965

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2355|consensus

Probab=97.88  E-value=1.4e-05  Score=59.99  Aligned_cols=116  Identities=11%  Similarity=0.130  Sum_probs=73.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD   74 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~   74 (156)
                      .+++|+|+|.-..    -.|.|...|.+.-..              .|....++-- +..+..++++.+-+ |+..    
T Consensus        54 tTlLKiLsGKhmv----~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~----  123 (291)
T KOG2355|consen   54 TTLLKILSGKHMV----GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG----  123 (291)
T ss_pred             hhhHHHhcCcccc----cCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc----
Confidence            3688888888665    368999999764210              1222222211 11122345564433 3321    


Q ss_pred             cCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                       +    .+.++-+++++.+.++  ..=+.+.+|-|||+||.|++.|++.-++++  |||-|--+|+.+.
T Consensus       124 -g----~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLL--LDEVTVDLDVlAR  183 (291)
T KOG2355|consen  124 -G----DDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLL--LDEVTVDLDVLAR  183 (291)
T ss_pred             -C----CChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEE--eeeeEeehHHHHH
Confidence             1    1124556778877774  334677899999999999999999999888  9998877776643

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.85  E-value=1e-05  Score=59.53  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      .+++..++..+..++....+|+|++|...++. .+.+|+++|  +|||++|+||.....
T Consensus        43 d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~lll--lDEp~~g~d~~~~~~   98 (185)
T smart00534       43 DRIFTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVL--LDELGRGTSTYDGVA   98 (185)
T ss_pred             ceEEEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEE--EecCCCCCCHHHHHH
Confidence            34456677777777788889998887433333 234898887  999999999875433

>PRK14079 recF recombination protein F; Provisional

Probab=97.85  E-value=1.3e-05  Score=64.68  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCchh
Q psy16753        104 NVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .-+|+||++++.+|..|+         .+|++++  +|||++++|+..
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilL--lDd~~seLD~~~  307 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLL--VDDFTAELDPRR  307 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEE--EcccchhcCHHH
Confidence            358999999999999999         8899888  999999999653

>KOG0063|consensus

Probab=97.83  E-value=7.7e-06  Score=67.13  Aligned_cols=61  Identities=21%  Similarity=0.192  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+....++++.+.|....++-+.+|||||-||.+||++.+.++++++  +|||..-+|+-..+
T Consensus       190 ~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyM--FDEpSsYLDVKQRL  250 (592)
T KOG0063|consen  190 ERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYM--FDEPSSYLDVKQRL  250 (592)
T ss_pred             hcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeE--ecCCcccchHHHhh
Confidence            34456778888999888999999999999999999999999999998  99999999966443

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.82  E-value=1.3e-05  Score=59.80  Aligned_cols=61  Identities=8%  Similarity=0.032  Sum_probs=43.3

Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753         48 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV  127 (156)
Q Consensus        48 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il  127 (156)
                      +++|...+|+.+++.|++.+....      .. ...+++.++++.+++                          .+|+++
T Consensus        63 ~~~q~~~l~~~~~~~d~l~~~~s~------~~-~e~~~~~~iL~~~~~--------------------------~~p~ll  109 (199)
T cd03283          63 FELPPVKIFTSIRVSDDLRDGISY------FY-AELRRLKEIVEKAKK--------------------------GEPVLF  109 (199)
T ss_pred             cCcccceEEEeccchhccccccCh------HH-HHHHHHHHHHHhccC--------------------------CCCeEE
Confidence            556666678889999998654321      11 122567788887762                          789888


Q ss_pred             EEecCCCCCCCCchhh
Q psy16753        128 VKITDSQPRGKWPISA  143 (156)
Q Consensus       128 l~~~Dep~~g~~~~~~  143 (156)
                      |  +|||++|+|+...
T Consensus       110 l--lDEp~~glD~~~~  123 (199)
T cd03283         110 L--LDEIFKGTNSRER  123 (199)
T ss_pred             E--EecccCCCCHHHH
Confidence            7  9999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=97.68  E-value=4.7e-05  Score=49.66  Aligned_cols=42  Identities=21%  Similarity=0.126  Sum_probs=27.9

Q ss_pred             cCccCcCChHHH-HHHHHHHH------Hhc------CCCeeEEecCCCCCCCCchhh
Q psy16753        100 NSVLNVLSGGER-KRVALAVQ------VSQ------DCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       100 ~~~~~~LSgGer-qrv~LA~A------L~~------~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+....+||||+ ..+.+|.+      +..      .+++++  |||||+++|+...
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~--lDEaF~~lD~~~~   81 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLF--LDEAFSKLDEENI   81 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEE--EESTTTTCGHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEE--EeCCCCcCCHHHH
Confidence            466789999999 44444442      333      245554  9999999997644

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.66  E-value=1.8e-05  Score=59.25  Aligned_cols=54  Identities=19%  Similarity=0.177  Sum_probs=42.9

Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++..++..+..++..+.+|+|++|. ..+.+++.+|++++  +|||++|+||..
T Consensus        72 ~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvl--lDE~~~gt~~~~  125 (204)
T cd03282          72 FNRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVL--IDELGRGTSSAD  125 (204)
T ss_pred             hhheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEE--eccccCCCCHHH
Confidence            4556667777666777888999999975 56677888999777  999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.57  E-value=5.1e-05  Score=56.66  Aligned_cols=34  Identities=18%  Similarity=0.043  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhcCCCeeEEecCCCC-----CCCCchhhhe
Q psy16753        110 ERKRVALAVQVSQDCSRVVKITDSQP-----RGKWPISALF  145 (156)
Q Consensus       110 erqrv~LA~AL~~~p~ill~~~Dep~-----~g~~~~~~~~  145 (156)
                      +++++.||++++.+|++++  +||||     +|+||.++..
T Consensus       157 ~~~f~~ia~~l~~~p~~~~--ldEp~~~~~~~~ld~~~~~~  195 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVF--VGAPALAPEEIQIDPELVAQ  195 (215)
T ss_pred             HHHHHHHHHHHhhccccee--cCCcccCCCccccCHHHHHH
Confidence            9999999999999999888  99999     9999986543

>PRK02224 chromosome segregation protein; Provisional

Probab=97.49  E-value=7.9e-05  Score=66.59  Aligned_cols=38  Identities=24%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             ccCcCChHHHH------HHHHHHHHhcC-----C-CeeEEecCCCCCCCCch
Q psy16753        102 VLNVLSGGERK------RVALAVQVSQD-----C-SRVVKITDSQPRGKWPI  141 (156)
Q Consensus       102 ~~~~LSgGerq------rv~LA~AL~~~-----p-~ill~~~Dep~~g~~~~  141 (156)
                      .+..||||+|+      |++++++++.+     | +++|  +||||+|+|+.
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~i--lDEp~~~lD~~  827 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLI--LDEPTVFLDSG  827 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceE--ecCCcccCCHH
Confidence            35689999999      88888888863     2 4444  99999999965

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=97.48  E-value=0.00014  Score=53.98  Aligned_cols=49  Identities=24%  Similarity=0.301  Sum_probs=34.8

Q ss_pred             cCcCChHHHHHHHHHHHHhcCCCe-eEEecCCCCCCCCch----------------hhheeecccc
Q psy16753        103 LNVLSGGERKRVALAVQVSQDCSR-VVKITDSQPRGKWPI----------------SALFITTASS  151 (156)
Q Consensus       103 ~~~LSgGerqrv~LA~AL~~~p~i-ll~~~Dep~~g~~~~----------------~~~~~~~~~~  151 (156)
                      ...+|.|++|.+.++.++...++- -++++|||-++|+|.                .|+.+||||.
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp  299 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP  299 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence            456799999999999888877742 223499999999874                4677777774

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.40  E-value=0.00012  Score=54.46  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=36.3

Q ss_pred             HHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         91 KELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        91 ~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..++..+........++.+++| +..+.+++.+|+++|  +|||++|+||...
T Consensus        77 ~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~lll--lDEp~~gld~~~~  126 (202)
T cd03243          77 TRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVL--IDELGRGTSTAEG  126 (202)
T ss_pred             EEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEE--EecCCCCCCHHHH
Confidence            3344444445556777777765 666678888999887  9999999998644

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=97.14  E-value=0.00083  Score=50.29  Aligned_cols=50  Identities=28%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCch
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +.+.+.++...+...      .||||||..++||.-+    ..+.+++|  |||+.++||+.
T Consensus       121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~i--lDEvd~~LD~~  174 (220)
T PF02463_consen  121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLI--LDEVDAALDEQ  174 (220)
T ss_dssp             HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEE--EESTTTTS-HH
T ss_pred             ccccccccccccccc------cccccccccccccccccccccccccccc--ccccccccccc
Confidence            445566776666433      8999999999999643    23455555  99999999965

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=97.14  E-value=0.00025  Score=62.83  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +-.+|-.+...+...++|+|+++++.|++++ .+|.++|  +|||++|+||..
T Consensus       375 ~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvL--lDE~~~GtDp~e  424 (782)
T PRK00409        375 FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVL--FDELGAGTDPDE  424 (782)
T ss_pred             EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEE--ecCCCCCCCHHH
Confidence            3344444455667789999999999999988 7787776  999999999873

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.89  E-value=0.0014  Score=51.26  Aligned_cols=41  Identities=24%  Similarity=0.152  Sum_probs=28.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD   53 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~   53 (156)
                      .|++++|+|.+.+    .+|+|.++|+++...    ..+..++++||..
T Consensus       125 ttl~~~l~~~~~~----~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~  169 (270)
T TIGR02858       125 TTLLRDLARILST----GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD  169 (270)
T ss_pred             HHHHHHHhCccCC----CCceEEECCEEeecchhHHHHHHHhccccccc
Confidence            3677788887774    899999999987521    2333456667754

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.84  E-value=0.00099  Score=50.12  Aligned_cols=36  Identities=19%  Similarity=0.053  Sum_probs=31.0

Q ss_pred             CcCC--hHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753        104 NVLS--GGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       104 ~~LS--gGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+|  .-+.||+.++++++.++.++|  +|||++|+|+.
T Consensus        87 ~~~S~f~~el~~l~~~l~~~~~~slvl--lDE~~~gtd~~  124 (213)
T cd03281          87 SGQSAFMIDLYQVSKALRLATRRSLVL--IDEFGKGTDTE  124 (213)
T ss_pred             hccchHHHHHHHHHHHHHhCCCCcEEE--eccccCCCCHH
Confidence            3445  567899999999999999887  99999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=96.63  E-value=0.00075  Score=59.79  Aligned_cols=49  Identities=20%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++.+......+.++|+|++++..+++++ .+|.++|  +|||++|+||...
T Consensus       372 ~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvL--lDE~g~GtD~~eg  420 (771)
T TIGR01069       372 DIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVL--FDELGAGTDPDEG  420 (771)
T ss_pred             ecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEE--ecCCCCCCCHHHH
Confidence            33433444566788999999999998876 6788776  9999999998743

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.10  E-value=0.0061  Score=55.04  Aligned_cols=39  Identities=23%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CccCcCChHHHHHHHHHHH------HhcC--CCeeEEecCCCCCCCCch
Q psy16753        101 SVLNVLSGGERKRVALAVQ------VSQD--CSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       101 ~~~~~LSgGerqrv~LA~A------L~~~--p~ill~~~Dep~~g~~~~  141 (156)
                      +.+..|||||+-.++||.+      +..+  .++++  +||||..+|+-
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~--LDEpf~~LD~e  857 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLF--LDEPFGTLDEE  857 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeE--eeCCCCCCCHH
Confidence            5778999999998888765      4456  56665  99999999965

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.71  E-value=0.038  Score=48.24  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             ccCcCChHHHHHHHHHHH--Hh----cCCCeeEEecCCCCCCCCch
Q psy16753        102 VLNVLSGGERKRVALAVQ--VS----QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~A--L~----~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+..||+||+|-++||..  |+    .+.+ +|  +|||+.-+|+.
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p-~i--iD~p~~~lD~~  590 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLP-VI--IDTPLGRLDSS  590 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCC-EE--EcCCccccChH
Confidence            346799999999887764  43    1233 33  79999999974

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.53  E-value=0.04  Score=39.78  Aligned_cols=46  Identities=20%  Similarity=0.109  Sum_probs=35.0

Q ss_pred             HcCCCccccCccCcCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753         92 ELGLLKCKNSVLNVLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKW  139 (156)
Q Consensus        92 ~~~L~~~~~~~~~~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~  139 (156)
                      ..+.....+..+..+|+|++|      +...+.+...+|++++  +|||++.+|
T Consensus        58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lv--iD~~~~~~~  109 (187)
T cd01124          58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVV--IDSVSGLLL  109 (187)
T ss_pred             hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEE--EeCcHHHhh
Confidence            344445567778889999998      5555556778899887  999999988

A related protein is found in archaea.

>COG4637 Predicted ATPase [General function prediction only]

Probab=94.44  E-value=0.046  Score=43.73  Aligned_cols=48  Identities=23%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch---------------hhheeecccc
Q psy16753        104 NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI---------------SALFITTASS  151 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~---------------~~~~~~~~~~  151 (156)
                      +.||-|+.+-+++|.+|...-.-=++++|||=.+|.|.               +|+.|.|||.
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~  331 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSP  331 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCH
Confidence            48999999999999998865333333599999999876               5777777764

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=93.90  E-value=0.026  Score=42.49  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=22.8

Q ss_pred             cCChHHHHH----HHHHHHH--hcCCCeeEEecCCC---CCCCCch
Q psy16753        105 VLSGGERKR----VALAVQV--SQDCSRVVKITDSQ---PRGKWPI  141 (156)
Q Consensus       105 ~LSgGerqr----v~LA~AL--~~~p~ill~~~Dep---~~g~~~~  141 (156)
                      ++|.|+.+.    ..++.++  +.+|+++|  +|||   |+++|+.
T Consensus        85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~lll--lDEp~~gt~~lD~~  128 (216)
T cd03284          85 DLAGGRSTFMVEMVETANILNNATERSLVL--LDEIGRGTSTYDGL  128 (216)
T ss_pred             hhccCcchHHHHHHHHHHHHHhCCCCeEEE--EecCCCCCChHHHH
Confidence            456665443    3466555  46888777  9999   7777753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0933|consensus

Probab=92.16  E-value=0.057  Score=48.70  Aligned_cols=37  Identities=32%  Similarity=0.426  Sum_probs=26.1

Q ss_pred             cCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCchhhheee
Q psy16753        103 LNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPISALFIT  147 (156)
Q Consensus       103 ~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~~~~~~~  147 (156)
                      ..+||||||--|+|+.-|+    ..++++|  |||      +.++++++
T Consensus      1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYI--LDE------VDAALDLS 1120 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYI--LDE------VDAALDLS 1120 (1174)
T ss_pred             HHHhcCchHHHHHHHHHHHHHcCCCCceee--hhh------hHHhhcch
Confidence            4689999999999875332    4556666  999      55555544

>PRK13695 putative NTPase; Provisional

Probab=91.73  E-value=0.099  Score=37.67  Aligned_cols=38  Identities=13%  Similarity=0.085  Sum_probs=30.9

Q ss_pred             cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCC--CCCCCC
Q psy16753        100 NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDS--QPRGKW  139 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~De--p~~g~~  139 (156)
                      .+....+|++++-+..+++..+.+|++++  +||  |+.+++
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~ll--lDE~~~~e~~~  112 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVII--IDEIGKMELKS  112 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEE--EECCCcchhhh
Confidence            34556799999999999999889999876  999  555554

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=91.57  E-value=0.21  Score=37.78  Aligned_cols=33  Identities=21%  Similarity=0.099  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753        109 GERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       109 Gerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .|.+++.-....+.+|+++|  +|||.+|++|...
T Consensus        95 ~e~~~~~~il~~~~~~sLvL--lDE~~~Gt~~~dg  127 (218)
T cd03286          95 VELSETANILRHATPDSLVI--LDELGRGTSTHDG  127 (218)
T ss_pred             HHHHHHHHHHHhCCCCeEEE--EecccCCCCchHH
Confidence            45566655556667888777  9999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=91.06  E-value=0.15  Score=34.37  Aligned_cols=51  Identities=14%  Similarity=0.099  Sum_probs=35.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMA   69 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~   69 (156)
                      ||+++|+..+.      +|++.++|.++...   ...+.+++++|+  . ...|+++|+.+.-
T Consensus        26 sGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--l-f~~ti~~Ni~~~~   79 (107)
T cd00820          26 IGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--G-LEIRLRLNIFLIT   79 (107)
T ss_pred             CCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--c-chhhHHhhceeee
Confidence            45666666644      78999999988542   334556788877  3 3458999998643

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=90.37  E-value=0.12  Score=39.84  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             CcCChHH--------HHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753        104 NVLSGGE--------RKRVALAVQVSQDCSRVVKITDSQPRGKWP  140 (156)
Q Consensus       104 ~~LSgGe--------rqrv~LA~AL~~~p~ill~~~Dep~~g~~~  140 (156)
                      ..+|||+        +|++++|+++..++.+.+  +  ||..+|+
T Consensus       128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~--l--~T~~~d~  168 (249)
T cd01128         128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTI--I--ATALVDT  168 (249)
T ss_pred             CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE--e--eeheecC
Confidence            4479999        999999999988999888  4  7777774

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF13175 AAA_15: AAA ATPase domain

Probab=89.44  E-value=0.39  Score=38.82  Aligned_cols=39  Identities=13%  Similarity=0.160  Sum_probs=27.9

Q ss_pred             CccCcCChHHHHHHHHHHHHhc----CC--C----eeEEecCCCCCCCCch
Q psy16753        101 SVLNVLSGGERKRVALAVQVSQ----DC--S----RVVKITDSQPRGKWPI  141 (156)
Q Consensus       101 ~~~~~LSgGerqrv~LA~AL~~----~p--~----ill~~~Dep~~g~~~~  141 (156)
                      -++..+|.|.++.+.++..+..    ..  .    ++  ++|||=.-|+|.
T Consensus       337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~il--lidEPE~~LHp~  385 (415)
T PF13175_consen  337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNIL--LIDEPELHLHPQ  385 (415)
T ss_pred             CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEE--EEeCccccCCHH
Confidence            3567899999988888765421    11  1    44  499999999876

>PF13166 AAA_13: AAA domain

Probab=88.42  E-value=0.76  Score=40.37  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=28.6

Q ss_pred             ccCcCChHHHHHHHHHH--HHhc-------CCCeeEEecCCCCCCCCch
Q psy16753        102 VLNVLSGGERKRVALAV--QVSQ-------DCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~--AL~~-------~p~ill~~~Dep~~g~~~~  141 (156)
                      ....||-|||.-+++|-  |.+.       +..++  ++|.|+++||-.
T Consensus       497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~ii--ViDDPISSLD~~  543 (712)
T PF13166_consen  497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKII--VIDDPISSLDHN  543 (712)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceE--EECCCCCCCCHH
Confidence            35689999999999994  4444       33444  599999999943

>KOG0018|consensus

Probab=87.39  E-value=0.41  Score=43.67  Aligned_cols=37  Identities=27%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             ccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCc
Q psy16753        102 VLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWP  140 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~  140 (156)
                      +..+||||||--.+||.-++.    .+++.+  |||=.++||-
T Consensus      1048 ~m~~LSGGEKTvAaLALLFaihsy~PaPFfv--lDEiDAALDn 1088 (1141)
T KOG0018|consen 1048 PMDNLSGGEKTVAALALLFAIHSYKPAPFFV--LDEIDAALDN 1088 (1141)
T ss_pred             chhhcCccHHHHHHHHHHHHhccCCCCCcee--hhhHHHHhhh
Confidence            346899999999999986664    466666  9996666653

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=86.27  E-value=0.98  Score=34.23  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753        110 ERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       110 erqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      |.+++.-+..-+.++.++|  +|||.+|.++.
T Consensus        97 e~~~~~~il~~~~~~sLvl--lDE~~~gT~~~  126 (222)
T cd03287          97 ELSETSHILSNCTSRSLVI--LDELGRGTSTH  126 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEE--EccCCCCCChh
Confidence            5555555555566777666  99999999755

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=82.31  E-value=0.69  Score=35.05  Aligned_cols=16  Identities=19%  Similarity=0.077  Sum_probs=11.8

Q ss_pred             HHhcCCCeeEEecCCCCCC
Q psy16753        119 QVSQDCSRVVKITDSQPRG  137 (156)
Q Consensus       119 AL~~~p~ill~~~Dep~~g  137 (156)
                      +...+|+++|  +| |+.+
T Consensus       107 ~~~~~~~lvv--iD-pl~~  122 (239)
T cd01125         107 LLIRRIDLVV--ID-PLVS  122 (239)
T ss_pred             HHhcCCCEEE--EC-ChHH
Confidence            3467899887  99 7754

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>KOG0964|consensus

Probab=82.24  E-value=0.4  Score=43.47  Aligned_cols=38  Identities=24%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             cCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCchh
Q psy16753        103 LNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       103 ~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +.+||||||--|+||.-+    +..++++|  +||=.++||+..
T Consensus      1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYl--fDEIDAaLDaQy 1136 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYL--FDEIDAALDAQY 1136 (1200)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhcCCcchhh--HhHHhhhccHHH
Confidence            348999999999998644    56677887  999999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	1e-08
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-06
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-05
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	9e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-04
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-04
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	8e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 27  DGQILLNGLEVEKN-LMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
            G + + G  V +    V+    ++P+       +   E++  +A           E   
Sbjct: 69  SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEE 125

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            V+   +  GL +     ++  S G  +++ +A
Sbjct: 126 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 27  DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
            G+I+ NG+ + K        F+P+  +    ++V +++  +A L     +   +    +
Sbjct: 63  KGEIIYNGVPITKVK--GKIFFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNE--I 115

Query: 87  DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
              L+ + +L  K  +   LS G  +RV LA
Sbjct: 116 MDALESVEVLDLKKKLGE-LSQGTIRRVQLA 145

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 27  DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
           +G++  +           V+ + PQ+       TV+E ++ +   K++ N          
Sbjct: 410 EGKVEWDL---------TVA-YKPQYIKAEYEGTVYELLSKIDSSKLNSN-------FYK 452

Query: 87  DALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
             LLK LG++   +  +  LSGGE +RVA+A 
Sbjct: 453 TELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 27  DGQILLNGLE------VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
               ++            + L       V +           + +    + K+   L  V
Sbjct: 151 SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKV 203

Query: 81  ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDC 124
           +     + ++KEL L    +  L+ LSGGE +RVA+A  + +  
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKA 247

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 47  GFVPQHDLTVDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLLKCKNSVL 103
           GFVPQ   +    +V + + LM R   +         +        L  L L        
Sbjct: 69  GFVPQFFSSPFAYSVLD-IVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAKREF 126

Query: 104 NVLSGGERKRVALA 117
             LSGG+R+ + +A
Sbjct: 127 TSLSGGQRQLILIA 140

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 5/109 (4%)

Query: 9   FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM 68
             G           +    G  L N         +K     PQ+   +          + 
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI-IKPQYVDNIPRAIKGPVQKVG 188

Query: 69  ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
             LK+       +    V   +K L L       +  LSGGE +R A+ 
Sbjct: 189 ELLKLRME----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG 233

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 43  VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 102
           + VS   PQ        TV +       L   +        +    ++K L +    +  
Sbjct: 413 LNVS-MKPQKIAPKFPGTVRQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE 464

Query: 103 LNVLSGGERKRVALA 117
           +  LSGGE +RVA+ 
Sbjct: 465 VQHLSGGELQRVAIV 479

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 28  GQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
           G I   G  +E      +     ++ Q         V  +      L + ++        
Sbjct: 54  GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY------LTLHQHDKTRTEL- 106

Query: 85  TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
            ++ +   L L        N LSGGE +RV LA
Sbjct: 107 -LNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 47  GFVPQHDLTVDTLTVH-----EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 101
               +   + +   VH     E+ +   +  ++  L  ++     D + + L +    N 
Sbjct: 75  YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNK 134

Query: 102 VLNVLSGGERKRVALAVQVSQDC 124
             N+LSGG  +R+ +A  + ++ 
Sbjct: 135 DANILSGGGLQRLLVAASLLREA 157

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 47  GFVPQ--HDLTVDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLLKCKNS 101
           GFV     +   +   V + + +      + + +++    R      LLK +G+      
Sbjct: 100 GFVSHSLLEKFQEGERVID-VVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQ 157

Query: 102 VLNVLSGGERKRVALA 117
            +  LS GE++RV +A
Sbjct: 158 YIGYLSTGEKQRVMIA 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.96
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.96
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.96
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.96
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.96
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.96
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.96
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.96
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.95
1g6h_A	257	High-affinity branched-chain amino acid transport	99.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.94
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.94
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.93
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.93
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.93
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.92
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.9
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.9
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.9
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.89
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.89
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.89
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.89
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.89
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.88
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.87
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.85
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.85
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.84
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.84
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.84
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.82
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.77
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.77
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.75
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.7
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.68
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.67
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.65
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.51
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.49
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.46
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.45
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.41
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.41
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.41
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.38
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.36
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.35
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.34
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.32
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.32
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.27
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.27
2og2_A	359	Putative signal recognition particle receptor; nuc	99.23
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.23
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.21
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.17
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.05
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.03
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.02
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.91
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.82
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.79
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.75
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.72
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.59
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.54
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.47
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.47
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.38
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.21
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.15
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.12
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.0
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.86
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.85
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.82
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.73
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.73
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.7
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.69
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.69
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.55
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.44
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.44
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.44
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.43
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.4
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.36
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.33
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.17
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.17
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.11
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.07
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.96
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.74
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.33
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.12
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.0
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.92
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.82
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.41
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.19
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.18
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.15
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.71
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.64
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.31
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.85
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.24
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	92.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	91.23
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	88.5
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	87.77
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	86.48
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	85.66
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	85.02
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	82.98

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.97  E-value=4e-30  Score=205.55  Aligned_cols=127  Identities=24%  Similarity=0.271  Sum_probs=108.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++|+|+|++.    |++|+|+++|+++...      ..++.+||+||++.+++.+||.||+.++...+   .......
T Consensus        68 STLlr~i~GL~~----p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~  140 (366)
T 3tui_C           68 STLIRCVNLLER----PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEV  140 (366)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHH
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHH
Confidence            367888888877    4899999999998642      13567999999999999999999999876543   2345566


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.++|.+..++++.+|||||||||+|||||+.+|+++|  +||||+||||.++.
T Consensus       141 ~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL--lDEPTs~LD~~~~~  200 (366)
T 3tui_C          141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL--CDQATSALDPATTR  200 (366)
T ss_dssp             HHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE--EESTTTTSCHHHHH
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHHH
Confidence            6789999999999999999999999999999999999999999888  99999999987543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=7.4e-30  Score=193.43  Aligned_cols=130  Identities=21%  Similarity=0.210  Sum_probs=105.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++++|+|++.    |++|+|+++|.++....       .++.+||+||++.+++.+|+.||+.++...+.........
T Consensus        45 STLl~~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~  120 (235)
T 3tif_A           45 STMLNIIGCLDK----PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE  120 (235)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH
Confidence            367888888877    48999999999985421       1345999999999999999999998865433111233445


Q ss_pred             HHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         82 RARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ..+++.++++.+++.+. .++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++.
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll--lDEPts~LD~~~~~  182 (235)
T 3tif_A          121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL--ADQPTWALDSKTGE  182 (235)
T ss_dssp             HHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHHH
T ss_pred             HHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence            56778899999999875 499999999999999999999999999888  99999999987543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.97  E-value=6.8e-30  Score=205.27  Aligned_cols=124  Identities=18%  Similarity=0.188  Sum_probs=108.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.|    ++|+|+++|+++... ..++.+||+||++.+|+.+||.||+.|+...+   ........+++.
T Consensus        43 STLLr~iaGl~~p----~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~  115 (381)
T 3rlf_A           43 STLLRMIAGLETI----TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVN  115 (381)
T ss_dssp             HHHHHHHHTSSCC----SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC----CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            3788888888874    899999999998643 33567999999999999999999999876543   234556677899


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+.
T Consensus       116 ~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL--LDEPts~LD~~  167 (381)
T 3rlf_A          116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL--LDEPLSNLDAA  167 (381)
T ss_dssp             HHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE--EESTTTTSCHH
T ss_pred             HHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE--EECCCcCCCHH
Confidence            99999999999999999999999999999999999999888  99999999976

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.96  E-value=4.1e-30  Score=205.23  Aligned_cols=126  Identities=18%  Similarity=0.174  Sum_probs=106.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecC----cc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE----KN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~----~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++|+|+|++.|    ++|+|+++|+++.    .. ..++.+||+||+..+|+.+||.||+.|+...+   ........
T Consensus        44 STLLr~iaGl~~p----~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~  116 (359)
T 3fvq_A           44 TTLLRCLAGFEQP----DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQER  116 (359)
T ss_dssp             HHHHHHHHTSSCC----SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHH
T ss_pred             HHHHHHHhcCCCC----CCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHH
Confidence            3788888888874    8999999999872    22 34567999999999999999999998864332   22334556


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.++|.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+..+
T Consensus       117 ~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL--LDEPts~LD~~~r  174 (359)
T 3fvq_A          117 QRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL--LDEPFSALDEQLR  174 (359)
T ss_dssp             HHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHH
T ss_pred             HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            789999999999999999999999999999999999999999988  9999999998643

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.96  E-value=1.8e-29  Score=201.32  Aligned_cols=125  Identities=22%  Similarity=0.201  Sum_probs=107.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|.++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+   ........+++.
T Consensus        55 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~  127 (355)
T 1z47_A           55 TTILRLIAGLER----PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVR  127 (355)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCC----CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            378888888887    4899999999998643 34567999999999999999999999876443   223445567899


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+.+
T Consensus       128 ~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~~  180 (355)
T 1z47_A          128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL--FDEPFAAIDTQI  180 (355)
T ss_dssp             HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTCCSSHHH
T ss_pred             HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHH
Confidence            99999999999999999999999999999999999999888  999999999763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.96  E-value=2.7e-29  Score=189.11  Aligned_cols=126  Identities=25%  Similarity=0.260  Sum_probs=104.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------c-cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------M-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++|+|+|++.    |++|+|.++|.++....      . ++.++|+||++.+++.+|+.||+.++...+   ......
T Consensus        44 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~  116 (224)
T 2pcj_A           44 STLLYILGLLDA----PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKE  116 (224)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHH
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHH
Confidence            367888888877    48999999999985321      1 256999999999899999999998765432   123334


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       117 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~  176 (224)
T 2pcj_A          117 AKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF--ADEPTGNLDSANT  176 (224)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCCCCHHHH
Confidence            45678899999999998999999999999999999999999999888  9999999998744

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.96  E-value=2.3e-29  Score=200.76  Aligned_cols=124  Identities=20%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      |++|+|+|++.    |++|+|.++|.++..      ...++.+||+||+..+|+.+|+.||+.|+...+   ........
T Consensus        46 TLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~  118 (353)
T 1oxx_K           46 TFMRIIAGLDV----PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIR  118 (353)
T ss_dssp             HHHHHHHTSSC----CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHH
T ss_pred             HHHHHHhCCCC----CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence            67777777776    589999999998753      234567999999999999999999998764332   22344456


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      +++.++++.++|.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+..
T Consensus       119 ~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLL--LDEP~s~LD~~~  175 (353)
T 1oxx_K          119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL--LDEPFSNLDARM  175 (353)
T ss_dssp             HHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCGGG
T ss_pred             HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHH
Confidence            788999999999999999999999999999999999999999988  999999999763

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.96  E-value=3e-29  Score=200.64  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|.++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+   ........++++
T Consensus        43 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~  115 (362)
T 2it1_A           43 STLLYTIAGIYK----PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVR  115 (362)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            378888888887    4899999999998643 23567999999999999999999999875443   223444567889


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+.
T Consensus       116 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~  167 (362)
T 2it1_A          116 EVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL--LDEPLSNLDAL  167 (362)
T ss_dssp             HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESGGGGSCHH
T ss_pred             HHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHH
Confidence            99999999999999999999999999999999999999888  99999999976

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.96  E-value=4e-29  Score=200.58  Aligned_cols=125  Identities=20%  Similarity=0.182  Sum_probs=106.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc------c-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK------N-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE   81 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~------~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~   81 (156)
                      .|++|+|+|++.    |++|+|+++|.++..      . ..++.+||+||+..+|+.+|+.||+.|+...+   ......
T Consensus        43 STLLr~iaGl~~----p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~  115 (372)
T 1g29_1           43 TTTLRMIAGLEE----PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQE  115 (372)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHH
T ss_pred             HHHHHHHHcCCC----CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            378888888887    489999999998753      2 23567999999999999999999999876443   223444


Q ss_pred             HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..++++++++.++|.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+..
T Consensus       116 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~~  174 (372)
T 1g29_1          116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL--MDEPLSNLDAKL  174 (372)
T ss_dssp             HHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE--EECTTTTSCHHH
T ss_pred             HHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--ECCCCccCCHHH
Confidence            56788999999999999999999999999999999999999999988  999999999763

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.96  E-value=4.7e-29  Score=191.92  Aligned_cols=127  Identities=20%  Similarity=0.233  Sum_probs=104.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecC--cc---cccceeeEecCCCCCCCCCCHHHHHHHHH-HhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--KN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~   82 (156)
                      .|++|+|+|++.    |++|+|.++|.++.  ..   ..++.+||+||++.+++.+|+.||+.++. ...   .......
T Consensus        64 STLlk~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~  136 (263)
T 2olj_A           64 STFLRCLNLLED----FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKA  136 (263)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHH
T ss_pred             HHHHHHHHcCCC----CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHH
Confidence            367888888877    58999999999874  11   23456999999998899999999998753 222   2233344


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|+||.++.
T Consensus       137 ~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll--LDEPts~LD~~~~~  196 (263)
T 2olj_A          137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML--FDEPTSALDPEMVG  196 (263)
T ss_dssp             HHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHHH
T ss_pred             HHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE--EeCCcccCCHHHHH
Confidence            5678899999999988999999999999999999999999999888  99999999987543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=6e-29  Score=190.66  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=105.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++|+|+|++.    |++|+|.++|.++...  ..++.+||+||++.+++.+|+.||+.+....+   ........+++
T Consensus        55 STLlk~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~  127 (256)
T 1vpl_A           55 TTTLRIISTLIK----PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMV  127 (256)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHH
T ss_pred             HHHHHHHhcCCC----CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHH
Confidence            378888888877    4899999999998532  23567999999998899999999998865432   12233344678


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       128 ~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll--LDEPts~LD~~~~  182 (256)
T 1vpl_A          128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI--LDEPTSGLDVLNA  182 (256)
T ss_dssp             HHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCccccCHHHH
Confidence            899999999988999999999999999999999999999888  9999999998744

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.96  E-value=4.8e-29  Score=191.75  Aligned_cols=126  Identities=18%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc----------------ccccceeeEecCCCCCCCCCCHHHHHHHHH-Hh
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----------------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RL   71 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----------------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-~~   71 (156)
                      .|++|+|+|++.    |++|+|.++|.++..                ...++.+||+||++.+++.+|+.||+.++. ..
T Consensus        46 STLlk~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~  121 (262)
T 1b0u_A           46 STFLRCINFLEK----PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV  121 (262)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh
Confidence            367888888877    489999999998751                123456999999998899999999998753 22


Q ss_pred             hcccCCcHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         72 KMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +   ........+++.++++.+++.+. .++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.++
T Consensus       122 ~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll--LDEPts~LD~~~~  189 (262)
T 1b0u_A          122 L---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL--FDEPTSALDPELV  189 (262)
T ss_dssp             T---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTSCHHHH
T ss_pred             c---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence            2   22333445678899999999988 899999999999999999999999999888  9999999998744

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.96  E-value=3.7e-29  Score=193.59  Aligned_cols=127  Identities=21%  Similarity=0.218  Sum_probs=105.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--c---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--N---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++|+|+|++.    |++|+|+++|.++..  .   ..++.+||+||++. .+...|+.+|+.++....   .......
T Consensus        48 STLl~~l~Gl~~----p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~  120 (275)
T 3gfo_A           48 STLFQNFNGILK----PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEI  120 (275)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHH
T ss_pred             HHHHHHHHcCCC----CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHH
Confidence            367888888877    489999999999841  1   24567999999873 345789999998875432   2345556


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|+||.++.
T Consensus       121 ~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl--LDEPts~LD~~~~~  180 (275)
T 3gfo_A          121 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI--LDEPTAGLDPMGVS  180 (275)
T ss_dssp             HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE--EECTTTTCCHHHHH
T ss_pred             HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHHH
Confidence            6789999999999999999999999999999999999999999988  99999999987543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.96  E-value=2.4e-29  Score=200.98  Aligned_cols=124  Identities=19%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|.++|.+++.. ..++.+||+||+..+|+.+|+.||+.|+...+   ........+++.
T Consensus        43 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~  115 (359)
T 2yyz_A           43 TTTLLMLAGIYK----PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVV  115 (359)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHH
T ss_pred             HHHHHHHHCCCC----CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            378888888877    4899999999998643 23567999999999999999999998764322   122233346789


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+.
T Consensus       116 ~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~  167 (359)
T 2yyz_A          116 EIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL--FDEPLSNLDAN  167 (359)
T ss_dssp             HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHH
T ss_pred             HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHH
Confidence            99999999999999999999999999999999999999888  99999999976

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.96  E-value=3.6e-29  Score=190.23  Aligned_cols=124  Identities=27%  Similarity=0.277  Sum_probs=103.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|.++|.++... ..++.+||+||++.+++.+|+.||+.++...+   .  .....+++.
T Consensus        38 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~  108 (240)
T 2onk_A           38 SVFLELIAGIVK----PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVR  108 (240)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHH
T ss_pred             HHHHHHHhCCCC----CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHH
Confidence            378888888877    4899999999998532 33567999999999999999999997653221   1  112256788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       109 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll--LDEPts~LD~~~~  162 (240)
T 2onk_A          109 EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL--LDEPLSAVDLKTK  162 (240)
T ss_dssp             HHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE--EESTTSSCCHHHH
T ss_pred             HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            99999999988999999999999999999999999999998  9999999998743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.96  E-value=4e-29  Score=200.51  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|+++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+   ........+++.
T Consensus        51 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~  123 (372)
T 1v43_A           51 TTTLRMIAGLEE----PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVR  123 (372)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCC----CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            378888888887    4899999999998643 23567999999999999999999998764322   223444566889


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.++|.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+.
T Consensus       124 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~  175 (372)
T 1v43_A          124 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL--MDEPLSNLDAK  175 (372)
T ss_dssp             HHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE--EESTTTTSCHH
T ss_pred             HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHH
Confidence            99999999999999999999999999999999999999988  99999999976

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.96  E-value=9.7e-29  Score=196.80  Aligned_cols=121  Identities=23%  Similarity=0.226  Sum_probs=102.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|.++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+.   ....   +++.
T Consensus        40 STLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~  109 (348)
T 3d31_A           40 TLFLELIAGFHV----PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVL  109 (348)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHH
T ss_pred             HHHHHHHHcCCC----CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHH
Confidence            367777777776    5899999999998642 335679999999999999999999998764431   1111   6788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|||+.
T Consensus       110 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL--LDEP~s~LD~~  161 (348)
T 3d31_A          110 DTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL--LDEPLSALDPR  161 (348)
T ss_dssp             HHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE--EESSSTTSCHH
T ss_pred             HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHH
Confidence            99999999999999999999999999999999999999988  99999999976

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.95  E-value=1.9e-28  Score=183.35  Aligned_cols=121  Identities=18%  Similarity=0.210  Sum_probs=101.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|++.    |++|+|.++|.++.  ..++.++|+||++.+++.+|+.||+.++...+.   ... . .+++.+
T Consensus        49 STLlk~l~Gl~~----p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~~-~-~~~~~~  117 (214)
T 1sgw_A           49 TTLLKTISTYLK----PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VKV-N-KNEIMD  117 (214)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CCC-C-HHHHHH
T ss_pred             HHHHHHHhcCCC----CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cch-H-HHHHHH
Confidence            378888888877    48999999999886  346779999999988999999999987654321   111 1 356788


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+. ++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       118 ~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lll--LDEPts~LD~~~~  169 (214)
T 1sgw_A          118 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYV--LDDPVVAIDEDSK  169 (214)
T ss_dssp             HHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEE--EESTTTTSCTTTH
T ss_pred             HHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCCcCCCHHHH
Confidence            9999999888 99999999999999999999999999988  9999999998744

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.95  E-value=9.9e-29  Score=189.44  Aligned_cols=129  Identities=17%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHh-hccc--------
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KMDR--------   75 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~~~~--------   75 (156)
                      .|++|+|+|++.    |++|+|.++|.++...    ..++.+||+||++.+++.+|+.||+.++... +...        
T Consensus        47 STLlk~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~  122 (257)
T 1g6h_A           47 STLINVITGFLK----ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK  122 (257)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCS
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCccccccccc
Confidence            378888888877    4899999999998542    1245699999999888899999999875322 1000        


Q ss_pred             -CCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         76 -NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        76 -~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                       ........+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.++
T Consensus       123 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll--LDEPts~LD~~~~  189 (257)
T 1g6h_A          123 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV--MDEPIAGVAPGLA  189 (257)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTCCHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence             01223345678899999999988999999999999999999999999999888  9999999998743

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.95  E-value=3.2e-28  Score=187.56  Aligned_cols=124  Identities=17%  Similarity=0.152  Sum_probs=103.2

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.    |++|+|.++|+++...   ..++.++|++|++.+++.+|+.||+.++...+     ......++
T Consensus        51 STLl~~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~  121 (266)
T 4g1u_C           51 STLLRLLTGYLS----PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQA  121 (266)
T ss_dssp             HHHHHHHTSSSC----CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHH
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHH
Confidence            367888888877    4899999999998643   23566899999998888899999998754322     11234567


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc------CCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ------DCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~------~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..++++.+||||||||++|||||+.      +|+++|  |||||+|+||.++
T Consensus       122 ~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl--lDEPts~LD~~~~  183 (266)
T 4g1u_C          122 LQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF--LDEPTSALDLYHQ  183 (266)
T ss_dssp             HHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE--ECCCCSSCCHHHH
T ss_pred             HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE--EeCccccCCHHHH
Confidence            8899999999999999999999999999999999999      999888  9999999998744

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=4.3e-28  Score=184.23  Aligned_cols=125  Identities=19%  Similarity=0.226  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++|+|+|++.    |++|+|.++|.++....    .++.+||+||++.+++.+|+.||+.++....    .......+
T Consensus        46 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~  117 (240)
T 1ji0_A           46 TTTLSAIAGLVR----AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKR  117 (240)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHH
T ss_pred             HHHHHHHhCCCC----CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHH
Confidence            367888888877    48999999999985421    2345999999999999999999998753111    11123445


Q ss_pred             HHHHHHHHcC-CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~-L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++++.++ +.+..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       118 ~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll--LDEPts~LD~~~~  175 (240)
T 1ji0_A          118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM--MDEPSLGLAPILV  175 (240)
T ss_dssp             HHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE--EECTTTTCCHHHH
T ss_pred             HHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHHH
Confidence            6788999994 9888899999999999999999999999999888  9999999998743

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.95  E-value=5.6e-28  Score=186.15  Aligned_cols=125  Identities=18%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|.++|.++.....++.+||+||++ ..++..|+.||+.++....    .......+++.
T Consensus        47 STLl~~i~Gl~~----p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~  118 (266)
T 2yz2_A           47 STLLQIVAGLIE----PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVK  118 (266)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHH
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHH
Confidence            367888888877    48999999999885433456799999995 4566789999998753221    11112235678


Q ss_pred             HHHHHcCCC--ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLL--KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~--~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.  +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       119 ~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll--LDEPts~LD~~~~  174 (266)
T 2yz2_A          119 KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI--LDEPLVGLDREGK  174 (266)
T ss_dssp             HHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCccccCCHHHH
Confidence            999999998  88999999999999999999999999999988  9999999998643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.94  E-value=2.5e-27  Score=180.98  Aligned_cols=129  Identities=22%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             HHHHHHHhhh--hhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753          9 FSGIHLLGQR--VVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus         9 ~~~l~~l~g~--~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      .|++|+|+|+  +.    |++|+|.++|.++....    .+..++|+||++.+++.+|+.+++.+...............
T Consensus        43 STLlk~l~Gl~~~~----p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  118 (250)
T 2d2e_A           43 STLGKILAGDPEYT----VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEF  118 (250)
T ss_dssp             HHHHHHHHTCTTCE----EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             HHHHHHHhCCCCCC----CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHH
Confidence            3788999998  44    58999999999985421    13348999999999999999999987542211111122334


Q ss_pred             HHHHHHHHHHcCC-CccccCccCc-CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         83 ARTVDALLKELGL-LKCKNSVLNV-LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        83 ~~~~~~~l~~~~L-~~~~~~~~~~-LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+++.++++.+++ .+..++++.+ ||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       119 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll--LDEPts~LD~~~~  179 (250)
T 2d2e_A          119 WTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV--LDETDSGLDIDAL  179 (250)
T ss_dssp             HHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE--EECGGGTTCHHHH
T ss_pred             HHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcCCCHHHH
Confidence            4678899999999 4778999999 99999999999999999999888  9999999997643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.94  E-value=1.8e-27  Score=184.50  Aligned_cols=128  Identities=20%  Similarity=0.128  Sum_probs=98.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecC--c---ccccceeeEecCCCCCC--CCCCHHHHHHHHHHhh-cccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--K---NLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLK-MDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~---~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~-~~~~~~~~   80 (156)
                      .|++|+|+|++.    |++|+|.++|.++.  .   ...++.+||+||++..+  +.+|+.||+.++.... ........
T Consensus        61 STLlk~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~  136 (279)
T 2ihy_A           61 TTLLNILNAYEP----ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD  136 (279)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCH
T ss_pred             HHHHHHHhCCCC----CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcH
Confidence            367888888877    48999999999875  2   12356799999986532  3569999997642110 00011122


Q ss_pred             HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|+|+.+
T Consensus       137 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLl--LDEPts~LD~~~  196 (279)
T 2ihy_A          137 EIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLI--LDEPAAGLDFIA  196 (279)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTCCHHH
T ss_pred             HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCccccCHHH
Confidence            344678899999999988999999999999999999999999999888  999999999764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.94  E-value=6e-27  Score=178.90  Aligned_cols=121  Identities=19%  Similarity=0.132  Sum_probs=100.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.    |+ |+|.++|.++...   ..++.++|+||++.+++.+|+.||+.++. ..   ...    .++
T Consensus        40 STLlk~l~Gl~~----p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~---~~~----~~~  106 (249)
T 2qi9_C           40 STLLARMAGMTS----GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HD---KTR----TEL  106 (249)
T ss_dssp             HHHHHHHTTSSC----CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SS---TTC----HHH
T ss_pred             HHHHHHHhCCCC----CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-cc---CCc----HHH
Confidence            367888888877    48 9999999987532   23567999999998888999999997642 11   111    456


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCC-------eeEEecCCCCCCCCchhhh
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS-------RVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~-------ill~~~Dep~~g~~~~~~~  144 (156)
                      +.++++.+++.+..++++.+||||||||++||+||+.+|+       ++|  |||||+|+|+.++.
T Consensus       107 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll--LDEPts~LD~~~~~  170 (249)
T 2qi9_C          107 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL--LDEPMNSLDVAQQS  170 (249)
T ss_dssp             HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE--ESSTTTTCCHHHHH
T ss_pred             HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE--EECCcccCCHHHHH
Confidence            8899999999998999999999999999999999999999       998  99999999987443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.94  E-value=3.5e-27  Score=182.19  Aligned_cols=129  Identities=19%  Similarity=0.170  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~   84 (156)
                      .|++|+|+|++.    |++|+|+++|.++...   ..++.++|+||++.+++ .|+.||+.++...... ..........
T Consensus        59 STLlk~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~  133 (271)
T 2ixe_A           59 STVAALLQNLYQ----PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMES  133 (271)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC----CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHH
Confidence            367888888877    5899999999998542   23567999999998877 5999999864211100 0000001122


Q ss_pred             HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.++++.+  ++....++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++.
T Consensus       134 ~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll--LDEPts~LD~~~~~  193 (271)
T 2ixe_A          134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI--LDNATSALDAGNQL  193 (271)
T ss_dssp             TCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHHH
T ss_pred             hHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE--EECCccCCCHHHHH
Confidence            345678888  78777889999999999999999999999999988  99999999987543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.93  E-value=3.4e-26  Score=175.03  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.    |++|+|.          .++.++|+||++.+++.+|+.||+.++...... .........+++.
T Consensus        45 STLl~~l~Gl~~----p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~  110 (253)
T 2nq2_C           45 STLLDLLLGIHR----PIQGKIE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM  110 (253)
T ss_dssp             HHHHHHHTTSSC----CSEEEEE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred             HHHHHHHhCCCC----CCCcEEE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence            367888888877    4899998          245699999999888889999999875321100 0011223456788


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++++.+++.+..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++.
T Consensus       111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll--LDEPts~LD~~~~~  165 (253)
T 2nq2_C          111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL--LDEPTSALDLANQD  165 (253)
T ss_dssp             HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEE--ESSSSTTSCHHHHH
T ss_pred             HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence            99999999998999999999999999999999999999888  99999999987543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.93  E-value=1.9e-26  Score=177.37  Aligned_cols=119  Identities=20%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceee-EecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig-~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++ |    ++|+|.++|.++.....++.++ |+||++.+  .+|+.||+.+....+   .    ...+++.
T Consensus        44 STLlk~l~Gl~-p----~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~----~~~~~~~  109 (263)
T 2pjz_A           44 TTLLRAISGLL-P----YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---G----LDRDLFL  109 (263)
T ss_dssp             HHHHHHHTTSS-C----CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---C----CCHHHHH
T ss_pred             HHHHHHHhCCC-C----CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---c----hHHHHHH
Confidence            36788888887 6    7999999999875321255799 99999876  789999998765332   1    1134678


Q ss_pred             HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++. +..++++.+||||||||++||+||+.+|+++|  |||||+|+|+.++
T Consensus       110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll--LDEPts~LD~~~~  164 (263)
T 2pjz_A          110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG--LDEPFENVDAARR  164 (263)
T ss_dssp             HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EECTTTTCCHHHH
T ss_pred             HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCccccCHHHH
Confidence            899999998 88999999999999999999999999999888  9999999998743

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.93  E-value=8.5e-26  Score=174.04  Aligned_cols=131  Identities=12%  Similarity=0.043  Sum_probs=100.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cc-cceeeEecCCCCCCCCCCHHHHHHHHHH-hh---cccCCcHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LM-VKVSGFVPQHDLTVDTLTVHEHMTLMAR-LK---MDRNLHHV   80 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~---~~~~~~~~   80 (156)
                      .|++|+|+|++.  ++|++|+|.++|.++...   .. +..++|+||++.+++.+|+.+++.+... ..   ........
T Consensus        60 STLlk~l~Gl~~--~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~  137 (267)
T 2zu0_C           60 STLSATLAGRED--YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF  137 (267)
T ss_dssp             HHHHHHHHTCTT--CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHH
T ss_pred             HHHHHHHhCCCC--CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHH
Confidence            378899999842  115899999999987542   11 2348999999999999999999876532 11   10111233


Q ss_pred             HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ...+++.++++.+++. ...++++. +||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       138 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLl--LDEPts~LD~~~~  200 (267)
T 2zu0_C          138 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI--LDESDSGLDIDAL  200 (267)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCCHHHH
Confidence            3456788999999996 56788887 599999999999999999999888  9999999998743

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.93  E-value=2.4e-26  Score=175.28  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=91.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.    |++|+|.++|.++...   .+++.+||+||++.+++ .|+.||+.++..     ...    .++
T Consensus        49 STLl~~l~Gl~~----p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~  114 (247)
T 2ff7_A           49 STLTKLIQRFYI----PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEK  114 (247)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHH
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHH
Confidence            367888888877    5899999999998542   24567999999998876 599999976421     111    234


Q ss_pred             HHHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+.           .++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       115 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lll--LDEPts~LD~~~~  181 (247)
T 2ff7_A          115 VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI--FDEATSALDYESE  181 (247)
T ss_dssp             HHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE--ECCCCSCCCHHHH
T ss_pred             HHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence            5566666666543           345568999999999999999999999888  9999999998743

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.93  E-value=5.2e-26  Score=178.31  Aligned_cols=119  Identities=19%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.+||+||++.+|+ .|++||+.++....     ..    +.+
T Consensus        95 TLl~ll~gl~~----p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~~----~~~  160 (306)
T 3nh6_A           95 TILRLLFRFYD----ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----GN----DEV  160 (306)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----CH----HHH
T ss_pred             HHHHHHHcCCC----CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----CH----HHH
Confidence            55666666665    5899999999998653   35677999999998885 59999998653211     11    123


Q ss_pred             HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++           ....++...+||||||||++|||||+.+|+++|  |||||+|+|+.+..
T Consensus       161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLl--LDEPts~LD~~~~~  227 (306)
T 3nh6_A          161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL--LDEATSALDTSNER  227 (306)
T ss_dssp             HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCSSCCCHHHHH
T ss_pred             HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHHHH
Confidence            333444433           344566678999999999999999999999888  99999999987543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.92  E-value=4e-26  Score=173.57  Aligned_cols=120  Identities=18%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+++ .|+.||+.++...    ...    .++
T Consensus        42 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~  108 (243)
T 1mv5_A           42 STIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DED  108 (243)
T ss_dssp             HHHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHH
T ss_pred             HHHHHHHhcCCC----CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHH
Confidence            367888888877    5899999999988532   34567999999998877 4999999754211    111    234


Q ss_pred             HHHHHHHcCCCcccc-----------CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~-----------~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+..+           +++.+||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll--LDEPts~LD~~~~  175 (243)
T 1mv5_A          109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM--LDEATASLDSESE  175 (243)
T ss_dssp             HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCSCSSCSSSC
T ss_pred             HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence            667788888866544           4467999999999999999999999888  9999999998743

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.91  E-value=9.5e-25  Score=167.60  Aligned_cols=118  Identities=24%  Similarity=0.233  Sum_probs=90.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.    | +|+|.++|.++...   ..++.++|+||++.+++ .|+.+|+.++. .    ...    .++
T Consensus        60 STLl~~l~Gl~~----~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-~----~~~----~~~  124 (260)
T 2ghi_A           60 STIAKLLYRFYD----A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK-L----DAT----DEE  124 (260)
T ss_dssp             HHHHHHHTTSSC----C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC-T----TCC----HHH
T ss_pred             HHHHHHHhccCC----C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC-C----CCC----HHH
Confidence            367888888865    3 89999999998542   24567999999998876 59999997632 1    111    124


Q ss_pred             HHHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +.++++.+++.+.           .++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++
T Consensus       125 ~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll--LDEPts~LD~~~~  191 (260)
T 2ghi_A          125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI--FDEATSSLDSKTE  191 (260)
T ss_dssp             HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCCCTTCHHHH
T ss_pred             HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHH
Confidence            4566666665432           246778999999999999999999999988  9999999998743

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.90  E-value=3.2e-25  Score=178.81  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=95.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .|++|+|+|++.     ++|+|+++|+++...   ..++.+||+||++.+|+ .|+.+|+.+..      ..    ..++
T Consensus        61 STLLr~iaGl~~-----~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~  124 (390)
T 3gd7_A           61 STLLSAFLRLLN-----TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQE  124 (390)
T ss_dssp             HHHHHHHHTCSE-----EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHH
T ss_pred             HHHHHHHhCCCC-----CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHH
Confidence            367888888765     589999999998643   24577999999999887 59999985321      11    1245


Q ss_pred             HHHHHHHcCCCccccCccCc-----------CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         86 VDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~-----------LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +.++++.+++.+..++++.+           |||||||||+|||||+.+|+++|  |||||+|||+.
T Consensus       125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL--LDEPts~LD~~  189 (390)
T 3gd7_A          125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL--LDEPSAHLDPV  189 (390)
T ss_dssp             HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE--EESHHHHSCHH
T ss_pred             HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHH
Confidence            77899999999888999988           99999999999999999999988  99999999976

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.90  E-value=5.5e-24  Score=160.51  Aligned_cols=110  Identities=21%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++|+|+|++.    |++|+|.++|          .++|+||++.+++. |+.||+.++...      ..    ....+.
T Consensus        49 TLl~~l~Gl~~----p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~  103 (229)
T 2pze_A           49 SLLMMIMGELE----PSEGKIKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSV  103 (229)
T ss_dssp             HHHHHHTTSSC----CSEEEEEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHH
T ss_pred             HHHHHHhCCCc----CCccEEEECC----------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHH
Confidence            67888888877    4899999998          38999999988875 999999764211      11    112233


Q ss_pred             HHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         90 LKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        90 l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      ++.+++.+           ..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++..+
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll--LDEPts~LD~~~~~~i  169 (229)
T 2pze_A          104 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVLTEKEI  169 (229)
T ss_dssp             HHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE--EESTTTTSCHHHHHHH
T ss_pred             HHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EECcccCCCHHHHHHH
Confidence            44444432           2234568999999999999999999999888  9999999998765443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.90  E-value=4.8e-24  Score=179.65  Aligned_cols=120  Identities=18%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.+||+||++.+|+. |++||+.++.. .   ..    ..+++
T Consensus       384 Tll~~l~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~---~~----~~~~~  450 (582)
T 3b5x_A          384 TIANLFTRFYD----VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-G---EY----TREQI  450 (582)
T ss_pred             HHHHHHhcCCC----CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-C---CC----CHHHH
Confidence            56777777766    5899999999998542   346779999999998875 99999986521 0   11    12346


Q ss_pred             HHHHHHcCCCccc-----------cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCK-----------NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~-----------~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+..           ++...+||||||||++||||++.+|+++|  |||||+|+|+.+..
T Consensus       451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill--lDEpts~LD~~~~~  517 (582)
T 3b5x_A          451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI--LDEATSALDTESER  517 (582)
T ss_pred             HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHHH
Confidence            6777777665433           34457999999999999999999999888  99999999987543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.89  E-value=5.1e-24  Score=179.48  Aligned_cols=119  Identities=17%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+|+. |++||+.++.. .   ...    .+++
T Consensus       384 TLl~~l~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~---~~~----~~~~  450 (582)
T 3b60_A          384 TIASLITRFYD----IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-E---EYS----REQI  450 (582)
T ss_dssp             HHHHHHTTTTC----CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-S---CCC----HHHH
T ss_pred             HHHHHHhhccC----CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-C---CCC----HHHH
Confidence            66777777776    5899999999998642   346679999999998875 99999986421 0   111    2346


Q ss_pred             HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++.+++.+.           .++...+||||||||++||||++.+|+++|  |||||+|+|+.+.
T Consensus       451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill--lDEpts~LD~~~~  516 (582)
T 3b60_A          451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI--LDEATSALDTESE  516 (582)
T ss_dssp             HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE--EETTTSSCCHHHH
T ss_pred             HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EECccccCCHHHH
Confidence            667777766433           344568999999999999999999999888  9999999998753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.89  E-value=5.2e-24  Score=179.35  Aligned_cols=122  Identities=20%  Similarity=0.173  Sum_probs=88.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||+++|..++...++|++|+|.++|.++...   ..++.+||+||++.+|+. |++||+.++..     ...    .+++
T Consensus       378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~  447 (578)
T 4a82_A          378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TAT----DEEV  447 (578)
T ss_dssp             SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCC----HHHH
T ss_pred             ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCC----HHHH
Confidence            3444444444444446999999999998643   356779999999998876 99999976421     111    1234


Q ss_pred             HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++..++.           ...+....+||||||||++||||++.+|+++|  |||||+|+|+.+.
T Consensus       448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill--lDEpts~LD~~~~  513 (578)
T 4a82_A          448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI--LDEATSALDLESE  513 (578)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHH
Confidence            4555555443           23344557899999999999999999999888  9999999998743

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=3.3e-24  Score=180.85  Aligned_cols=123  Identities=16%  Similarity=0.200  Sum_probs=88.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-   85 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+|+. |++||+.++...     .......+. 
T Consensus       384 Tll~~l~g~~~----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~  453 (587)
T 3qf4_A          384 TLMNLIPRLID----PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED-----ATDDEIVEAA  453 (587)
T ss_dssp             HHHHTTTTSSC----CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHH
T ss_pred             HHHHHHhCCcc----CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC-----CCHHHHHHHH
Confidence            45566666655    6899999999998643   346779999999998865 999999754211     111111111 


Q ss_pred             ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                          +.+.++.+  |++...+++..+||||||||++||||++.+|+++|  |||||+|+|+.+..
T Consensus       454 ~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill--lDEpts~LD~~~~~  516 (587)
T 3qf4_A          454 KIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI--LDDCTSSVDPITEK  516 (587)
T ss_dssp             HHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE--EESCCTTSCHHHHH
T ss_pred             HHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence                11222222  44455577788999999999999999999999988  99999999987543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=159.03  Aligned_cols=113  Identities=23%  Similarity=0.255  Sum_probs=83.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|++.|    ++|+|.++|          .++|+||++.+ +..|+.||+.++...      ..... +++.+
T Consensus        45 STLl~~l~Gl~~p----~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~~-~~~~~  102 (237)
T 2cbz_A           45 SSLLSALLAEMDK----VEGHVAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPYY-RSVIQ  102 (237)
T ss_dssp             HHHHHHHTTCSEE----EEEEEEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTHH-HHHHH
T ss_pred             HHHHHHHhcCCCC----CCceEEECC----------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHHH-HHHHH
Confidence            3788888888875    899999998          38999999864 578999999764211      11111 11111


Q ss_pred             ---HHHHcCCCc-----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         89 ---LLKELGLLK-----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        89 ---~l~~~~L~~-----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                         +.+.+++.+     ..++++.+||||||||++|||||+.+|+++|  |||||+|+|+.++..
T Consensus       103 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll--LDEPts~LD~~~~~~  165 (237)
T 2cbz_A          103 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL--FDDPLSAVDAHVGKH  165 (237)
T ss_dssp             HTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EESTTTTSCHHHHHH
T ss_pred             HHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHHH
Confidence               223333321     3568899999999999999999999999988  999999999875443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=8.8e-24  Score=178.59  Aligned_cols=119  Identities=18%  Similarity=0.123  Sum_probs=89.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+|+ .|++||+.++...     ..    .+++
T Consensus       396 Tll~~l~g~~~----p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~-----~~----~~~~  461 (598)
T 3qf4_B          396 TIVNLLMRFYD----VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPG-----AT----DEEI  461 (598)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTT-----CC----TTHH
T ss_pred             HHHHHHhcCcC----CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCC-----CC----HHHH
Confidence            67778888777    5899999999998643   35677999999998886 4999999764211     11    1234


Q ss_pred             HHHHHHcCCCcccc-----------CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L~~~~~-----------~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++.+++.+..+           ....+||||||||++||||++.+|+++|  |||||+|+|+.+..
T Consensus       462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill--lDEpts~LD~~~~~  528 (598)
T 3qf4_B          462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI--LDEATSNVDTKTEK  528 (598)
T ss_dssp             HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE--ECCCCTTCCHHHHH
T ss_pred             HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCccCCCHHHHH
Confidence            45555555543333           3337899999999999999999999888  99999999986543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.87  E-value=1.2e-22  Score=158.21  Aligned_cols=110  Identities=21%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|++.|    ++|+|.++|          .++|+||++.+++. |+.||+. +.  .    ...    ..+.+
T Consensus        78 STLlk~l~Gl~~p----~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~  131 (290)
T 2bbs_A           78 TSLLMMIMGELEP----SEGKIKHSG----------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRS  131 (290)
T ss_dssp             HHHHHHHTTSSCE----EEEEEECCS----------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHH
T ss_pred             HHHHHHHhcCCCC----CCcEEEECC----------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHH
Confidence            3678888888774    899999988          38999999988775 9999986 31  1    111    11233


Q ss_pred             HHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753         89 LLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI  146 (156)
Q Consensus        89 ~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~  146 (156)
                      .++.+++.+.           .++.+.+||||||||++|||||+.+|+++|  |||||+|+|+.++..+
T Consensus       132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll--LDEPts~LD~~~~~~i  198 (290)
T 2bbs_A          132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVLTEKEI  198 (290)
T ss_dssp             HHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHHHHH
T ss_pred             HHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE--EECCcccCCHHHHHHH
Confidence            3444444322           233458999999999999999999999988  9999999998765443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.85  E-value=9.2e-22  Score=166.44  Aligned_cols=113  Identities=22%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|++.    |++|+|.+          ...+||+||+....+..|+.+++.......       ....+++.+
T Consensus       396 STLlk~l~Gl~~----p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~  454 (607)
T 3bk7_A          396 TTFVKMLAGVEE----PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTE  454 (607)
T ss_dssp             HHHHHHHHTSSC----CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHH
T ss_pred             HHHHHHHhcCCC----CCceEEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHH
Confidence            378888888877    48999975          235899999987777889988775431111       011346788


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|||+.++.
T Consensus       455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLl--LDEPt~~LD~~~~~  508 (607)
T 3bk7_A          455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL--LDEPSAYLDVEQRL  508 (607)
T ss_dssp             THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE--EECTTTTCCHHHHH
T ss_pred             HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCccCCCHHHHH
Confidence            9999999988899999999999999999999999999888  99999999987543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.85  E-value=9.2e-22  Score=177.83  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=87.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-   85 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.+|||+|++.+|+. |++||+.++...     .......+. 
T Consensus       431 Tl~~ll~g~~~----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~  500 (1284)
T 3g5u_A          431 TTVQLMQRLYD----PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAV  500 (1284)
T ss_dssp             HHHHHTTTSSC----CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHH
T ss_pred             HHHHHHhCCCC----CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHH
Confidence            45555555555    6899999999998643   356779999999998876 999999876321     111111111 


Q ss_pred             ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          +.+.++.+  +++........+||||||||++||||++.+|+++|  |||||+++|+.+.
T Consensus       501 ~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ili--LDEpts~LD~~~~  562 (1284)
T 3g5u_A          501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL--LDEATSALDTESE  562 (1284)
T ss_dssp             HHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEE--EESTTCSSCHHHH
T ss_pred             HHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence                12223333  22333455667899999999999999999999888  9999999998643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.84  E-value=1.5e-21  Score=163.27  Aligned_cols=113  Identities=24%  Similarity=0.202  Sum_probs=90.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.+          ...++|+||+....+..|+.+++........       ...+.+.+
T Consensus       326 STLlk~l~Gl~~----p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~  384 (538)
T 1yqt_A          326 TTFVKMLAGVEE----PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTE  384 (538)
T ss_dssp             HHHHHHHHTSSC----CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHH
T ss_pred             HHHHHHHhCCCC----CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHH
Confidence            367888888877    48999975          1358999999877778899887654311110       01245778


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.++.
T Consensus       385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl--LDEPt~~LD~~~~~  438 (538)
T 1yqt_A          385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL--LDEPSAYLDVEQRL  438 (538)
T ss_dssp             TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE--EECTTTTCCHHHHH
T ss_pred             HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence            9999999888899999999999999999999999999888  99999999987543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.84  E-value=4.3e-22  Score=180.36  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=91.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|.|++.    |++|+|.+||.|+...   .+|+++++|||++.+|+. |+++|+.++...   ..    ...+++
T Consensus      1120 TL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~----~sd~ei 1187 (1321)
T 4f4c_A         1120 TVVALLERFYD----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SS----VTMAQV 1187 (1321)
T ss_dssp             SHHHHHTTSSC----CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TT----SCHHHH
T ss_pred             HHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CC----CCHHHH
Confidence            45666666666    5899999999999753   468889999999999876 999999765311   11    122356


Q ss_pred             HHHHHHcCCC-------ccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-------KCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-------~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .++++..++.       +..|..+    .+||||||||++|||||+.+|+++|  |||||+++|+.+.
T Consensus      1188 ~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILi--LDEaTSaLD~~tE 1253 (1321)
T 4f4c_A         1188 EEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL--LDEATSALDTESE 1253 (1321)
T ss_dssp             HHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEE--EESCCCSTTSHHH
T ss_pred             HHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEE--EeCccccCCHHHH
Confidence            6667776663       2334444    5699999999999999999999888  9999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.84  E-value=1.1e-21  Score=163.98  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=91.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.+++.         .++|++|+.......|+.+++.+.....    ..  .....+++
T Consensus       308 STLl~~l~Gl~~----p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~  368 (538)
T 3ozx_A          308 TTFARILVGEIT----ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEE  368 (538)
T ss_dssp             HHHHHHHTTSSC----CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHH
T ss_pred             HHHHHHHhCCCC----CCCcEEEECCe---------eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHH
Confidence            367888888877    48999986543         4789999877666789999987531110    00  11235678


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|+|+.++
T Consensus       369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl--LDEPT~gLD~~~~  421 (538)
T 3ozx_A          369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV--LDQPSSYLDVEER  421 (538)
T ss_dssp             TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence            8999999999999999999999999999999999999988  9999999998644

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.84  E-value=2e-21  Score=176.02  Aligned_cols=121  Identities=18%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||+++|..++...+.|++|+|.++|.++...   .+|+.+|||+|++.+|+. |++||+.++...     ..    .+++
T Consensus       455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~----~~~v  524 (1321)
T 4f4c_A          455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----IT----REEM  524 (1321)
T ss_dssp             SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CC----HHHH
T ss_pred             CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----ch----HHHH
Confidence            4555566666555567999999999998753   457889999999998865 999999876321     11    2345


Q ss_pred             HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++..++.           ......-.+||||||||++||||+..+|+++|  |||||+++|+.+
T Consensus       525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili--LDE~tSaLD~~t  589 (1321)
T 4f4c_A          525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL--LDEATSALDAES  589 (1321)
T ss_dssp             HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCTTT
T ss_pred             HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE--EecccccCCHHH
Confidence            5555555542           22233446799999999999999999999988  999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.82  E-value=4.3e-21  Score=173.47  Aligned_cols=120  Identities=18%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++...   ..++.++|+||++.+|+ .|++||+.++....   ....    +.+
T Consensus      1074 Tl~~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i 1141 (1284)
T 3g5u_A         1074 TVVQLLERFYD----PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEI 1141 (1284)
T ss_dssp             HHHHHHTTSSC----CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHH
T ss_pred             HHHHHHhcCcC----CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHH
Confidence            55666666655    6899999999998643   35677999999998775 59999997542111   1111    223


Q ss_pred             HHHHHHcCCCc-------cc----cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLLK-------CK----NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~~-------~~----~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++..++.+       ..    .....+||||||||++|||||+.+|+++|  |||||+|+|+.+.
T Consensus      1142 ~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi--LDEpTs~lD~~~~ 1207 (1284)
T 3g5u_A         1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL--LDEATSALDTESE 1207 (1284)
T ss_dssp             HHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE--EESCSSSCCHHHH
T ss_pred             HHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence            33444444322       22    23346899999999999999999999998  9999999998643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.80  E-value=6.2e-20  Score=155.24  Aligned_cols=113  Identities=18%  Similarity=0.122  Sum_probs=87.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.|    ++|+.      +.    ...++|+||+.......|+.+++...  ...  ...   ....+.+
T Consensus       392 STLlk~l~Gl~~p----~~G~~------~~----~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~--~~~---~~~~~~~  450 (608)
T 3j16_B          392 TTLIKLLAGALKP----DEGQD------IP----KLNVSMKPQKIAPKFPGTVRQLFFKK--IRG--QFL---NPQFQTD  450 (608)
T ss_dssp             HHHHHHHHTSSCC----SBCCC------CC----SCCEEEECSSCCCCCCSBHHHHHHHH--CSS--TTT---SHHHHHH
T ss_pred             HHHHHHHhcCCCC----CCCcC------cc----CCcEEEecccccccCCccHHHHHHHH--hhc--ccc---cHHHHHH
Confidence            3678888888875    78862      21    23589999997666667999876422  111  111   1235678


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|+|+.++.
T Consensus       451 ~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLl--LDEPT~gLD~~~~~  504 (608)
T 3j16_B          451 VVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYL--IDEPSAYLDSEQRI  504 (608)
T ss_dssp             THHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEE--ECCTTTTCCHHHHH
T ss_pred             HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCCCCCCHHHHH
Confidence            8999999999999999999999999999999999999988  99999999986443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.77  E-value=2.6e-20  Score=157.58  Aligned_cols=117  Identities=19%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEE---------EECCEecCcc-----cccceeeEecCCCCCCC---CCCHHHHHHHHHHh
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQI---------LLNGLEVEKN-----LMVKVSGFVPQHDLTVD---TLTVHEHMTLMARL   71 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I---------~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~---~ltv~e~l~~~~~~   71 (156)
                      .|++|+|+|++.|    ++|++         .++|.++...     ..+..+++++|....++   ..|+.+++..    
T Consensus       131 STLlkiL~Gll~p----~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----  202 (607)
T 3bk7_A          131 TTAVKILAGQLIP----NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----  202 (607)
T ss_dssp             HHHHHHHTTSSCC----CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----
T ss_pred             HHHHHHHhCCCCC----CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----
Confidence            3778888888774    78986         4566554221     11234678888643322   2378887642    


Q ss_pred             hcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .   .     ..+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|||+.++
T Consensus       203 ~---~-----~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl--LDEPTs~LD~~~~  264 (607)
T 3bk7_A          203 V---D-----EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF--FDEPSSYLDIRQR  264 (607)
T ss_dssp             T---C-----CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EECTTTTCCHHHH
T ss_pred             h---H-----HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence            1   0     11346788999999998999999999999999999999999999988  9999999998743

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.77  E-value=5.8e-20  Score=153.61  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEE---------EECCEecCcc-----cccceeeEecCCCCCCCC---CCHHHHHHHHHHh
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQI---------LLNGLEVEKN-----LMVKVSGFVPQHDLTVDT---LTVHEHMTLMARL   71 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I---------~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~---ltv~e~l~~~~~~   71 (156)
                      .|++|+|+|++.|    ++|++         .++|.++...     .....+++++|....++.   .++.+++...   
T Consensus        61 STLlk~l~Gl~~p----~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---  133 (538)
T 1yqt_A           61 STAVKILAGQLIP----NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---  133 (538)
T ss_dssp             HHHHHHHHTSSCC----CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---
T ss_pred             HHHHHHHhCCCCC----CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---
Confidence            3788888888774    78985         3566554211     112346788887543321   2677765321   


Q ss_pred             hcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          .     ..+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|||+.++
T Consensus       134 ----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLl--LDEPTs~LD~~~~  194 (538)
T 1yqt_A          134 ----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYF--FDEPSSYLDIRQR  194 (538)
T ss_dssp             ----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHH
T ss_pred             ----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence                0     11356788999999988999999999999999999999999999888  9999999998743

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.75  E-value=1.9e-19  Score=150.41  Aligned_cols=117  Identities=18%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEE-----------EECCEecCcc---------cccceeeEecCCCCCCCCCCHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQI-----------LLNGLEVEKN---------LMVKVSGFVPQHDLTVDTLTVHEHMTLM   68 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I-----------~~~G~~i~~~---------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~   68 (156)
                      .|++|+|+|++.|    ++|+|           .++|.++...         .....++++.+.+.++ ..++.+++...
T Consensus        39 STLlkiL~Gl~~p----~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~  113 (538)
T 3ozx_A           39 TTVLKILAGEIIP----NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL-KGTVNEILTKI  113 (538)
T ss_dssp             HHHHHHHTTSSCC----CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHH
T ss_pred             HHHHHHHhcCCCC----CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc-cCcHHHHhhcc
Confidence            3788888888874    89998           6777665321         0111122333322222 23666543210


Q ss_pred             HHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         69 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                                  ...++++++++.+++....++++.+|||||||||+||+||+.+|+++|  |||||+|||+.++.
T Consensus       114 ------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~ill--lDEPts~LD~~~~~  175 (538)
T 3ozx_A          114 ------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYI--FDQPSSYLDVRERM  175 (538)
T ss_dssp             ------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHHH
T ss_pred             ------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence                        012346788999999999999999999999999999999999999888  99999999987543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.70  E-value=1.4e-17  Score=142.17  Aligned_cols=55  Identities=27%  Similarity=0.322  Sum_probs=48.7

Q ss_pred             HHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCCCchhhh
Q psy16753         88 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        88 ~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.+++.+. .++++.+|||||||||+|||||+.+|+  ++|  |||||+||||.++.
T Consensus       184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLl--LDEPtsgLD~~~~~  241 (670)
T 3ux8_A          184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYV--LDEPSIGLHQRDND  241 (670)
T ss_dssp             HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEE--EECTTTTCCGGGHH
T ss_pred             HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEE--EECCccCCCHHHHH
Confidence            45888999765 689999999999999999999999998  887  99999999987543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.68  E-value=2.1e-17  Score=145.42  Aligned_cols=58  Identities=24%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCCcc--ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKC--KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~--~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++++++.+|+...  .++++.+||||||||+.||+||+.+|+++|  |||||+|||+.+.
T Consensus       878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLL--LDEPT~gLD~~s~  937 (986)
T 2iw3_A          878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV--LDEPTNYLDRDSL  937 (986)
T ss_dssp             HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEE--EECGGGTCCHHHH
T ss_pred             HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEE--EECCccCCCHHHH
Confidence            467889999999753  588999999999999999999999999888  9999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4.1e-18  Score=144.11  Aligned_cols=58  Identities=22%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|  |||||+|||+.++
T Consensus       200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~lll--lDEPts~LD~~~~  257 (608)
T 3j16_B          200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYM--FDEPSSYLDVKQR  257 (608)
T ss_dssp             HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEE--EECTTTTCCHHHH
T ss_pred             HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEE--EECcccCCCHHHH
Confidence            468899999999999999999999999999999999999999888  9999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.65  E-value=1.1e-16  Score=140.90  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             eeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcC
Q psy16753         46 SGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQD  123 (156)
Q Consensus        46 ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~  123 (156)
                      ++|++|+. ..++.+|+.+++.+  ..   ...     .+++.++++.+++. +..++++.+||||||||++||+||+.+
T Consensus       497 ~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~  566 (986)
T 2iw3_A          497 TVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRN  566 (986)
T ss_dssp             EEETTCCCCCCCTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred             EEEEcccccccccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            67888875 56788999999864  11   111     45688999999995 677999999999999999999999999


Q ss_pred             CCeeEEecCCCCCCCCchhhh
Q psy16753        124 CSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus       124 p~ill~~~Dep~~g~~~~~~~  144 (156)
                      |+++|  |||||+|||+.++.
T Consensus       567 P~lLL--LDEPTs~LD~~~~~  585 (986)
T 2iw3_A          567 ADILL--LDEPTNHLDTVNVA  585 (986)
T ss_dssp             CSEEE--EESTTTTCCHHHHH
T ss_pred             CCEEE--EECCccCCCHHHHH
Confidence            99888  99999999987543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.3e-18  Score=139.34  Aligned_cols=113  Identities=14%  Similarity=0.002  Sum_probs=85.7

Q ss_pred             HHHHHHHhhhhhcCCCCcce-E-EEECCEecCcccccceeeEecCCCCC---CCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDG-Q-ILLNGLEVEKNLMVKVSGFVPQHDLT---VDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G-~-I~~~G~~i~~~~~~~~ig~v~Q~~~~---~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      .|++|+|+|++.+    ++| + |+++|.      .++.++++||+..+   .+.+++.+|+ ++....  .+.   ...
T Consensus       152 STLlr~L~Gl~~p----~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~--~~~---~~~  215 (460)
T 2npi_A          152 TSLSRTLCSYALK----FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLT--SGA---TLL  215 (460)
T ss_dssp             HHHHHHHHHTTHH----HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCB--SSC---CSS
T ss_pred             HHHHHHHhCcccc----cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhh-cccccc--cCc---chH
Confidence            3788999999885    899 8 999982      24568999998743   4456888877 432211  010   011


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHH--HhcCCCe----eEEecCC-CCCCCCch
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ--VSQDCSR----VVKITDS-QPRGKWPI  141 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~A--L~~~p~i----ll~~~De-p~~g~~~~  141 (156)
                      +++.++++.+|+.+..+  +.+||||||||++||+|  |+.+|++    +|  +|| ||+|+|+.
T Consensus       216 ~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl--LDEpPts~LD~~  276 (460)
T 2npi_A          216 HNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI--VDTPSISQLDEN  276 (460)
T ss_dssp             CCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE--EECCCGGGSCSS
T ss_pred             HHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEE--EeCCcccccChh
Confidence            23556788889887665  88999999999999999  9999999    88  999 99999985

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.51  E-value=6.4e-15  Score=125.83  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCC---eeEEecCC
Q psy16753         58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCS---RVVKITDS  133 (156)
Q Consensus        58 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~---ill~~~De  133 (156)
                      .+|+.+++.+....         ...++..+.++.+++.. ..++++.+|||||||||+|||||+.+|+   ++|  |||
T Consensus       504 ~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~lll--lDE  572 (670)
T 3ux8_A          504 DMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI--LDE  572 (670)
T ss_dssp             TSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEE--EES
T ss_pred             hCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEE--EeC
Confidence            46788887653211         11234567788899964 4688999999999999999999999874   777  999


Q ss_pred             CCCCCCchhhh
Q psy16753        134 QPRGKWPISAL  144 (156)
Q Consensus       134 p~~g~~~~~~~  144 (156)
                      ||+||||.++.
T Consensus       573 Pt~~LD~~~~~  583 (670)
T 3ux8_A          573 PTTGLHVDDIA  583 (670)
T ss_dssp             TTTTCCHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99999987543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.49  E-value=2.7e-14  Score=125.33  Aligned_cols=57  Identities=28%  Similarity=0.349  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~~~~~~  143 (156)
                      ...+.+..+|+... .++++.+|||||||||.||+||+.+|+  ++|  |||||+||||..+
T Consensus       443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lll--LDEPT~gLD~~~~  502 (916)
T 3pih_A          443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYV--LDEPTIGLHPRDT  502 (916)
T ss_dssp             HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEE--EECTTTTCCGGGH
T ss_pred             HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEE--EECCccCCCHHHH
Confidence            34467888999754 689999999999999999999999887  666  9999999998743

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.46  E-value=9.1e-17  Score=123.74  Aligned_cols=115  Identities=10%  Similarity=0.045  Sum_probs=70.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|+..+    ++|+|.++|.++.....++.+++++|+..+++.+|+.+++.++.....  ...    .+.+.+
T Consensus        16 STLln~L~g~~~~----~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~----~~~i~~   85 (270)
T 3sop_A           16 STLVNTLFKSQVS----RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC----WEPIEK   85 (270)
T ss_dssp             HHHHHHHHHHHC----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC----SHHHHH
T ss_pred             HHHHHHHhCCCCC----CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH----HHHHHH
Confidence            4789999999985    899999999988654445779999999988889999999877543221  101    112333


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++    ....+..+.+||||||||+.+|||++.   ++  ++|||+.|+|+..
T Consensus        86 ~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---ll--lldep~~gL~~lD  130 (270)
T 3sop_A           86 YIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LY--FISPTGHSLRPLD  130 (270)
T ss_dssp             HHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EE--EECCCSSSCCHHH
T ss_pred             HHH----HHHHhhhHHhcCcccchhhhhheeeee---eE--EEecCCCcCCHHH
Confidence            333    334566778999999999999999774   34  5999999999764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.45  E-value=2.6e-14  Score=124.43  Aligned_cols=58  Identities=28%  Similarity=0.326  Sum_probs=51.1

Q ss_pred             HHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcC---CCeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQD---CSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~---p~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.++++.++|.. ..++++.+|||||||||.||++|+.+   |+++|  |||||+|+|+.+.
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI--LDEPTsGLD~~~~  769 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYV--LDEPTTGLHPADV  769 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEE--EECTTTTCCHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEE--EECCCCCCCHHHH
Confidence            46789999999986 46899999999999999999999997   68777  9999999997643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.41  E-value=2.6e-13  Score=119.14  Aligned_cols=58  Identities=22%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             HHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCCCCCCCCchhh
Q psy16753         84 RTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        84 ~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~Dep~~g~~~~~~  143 (156)
                      .+..+.++.+||.. ..++++.+|||||||||.||+||+.+|   +++|  |||||+|||+.+.
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLI--LDEPTsGLD~~~~  844 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYI--LDEPTVGLHFEDV  844 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEE--EESTTTTCCHHHH
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEE--EECCCCCCCHHHH
Confidence            45678899999975 358899999999999999999999876   6777  9999999997643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.41  E-value=2.2e-13  Score=119.61  Aligned_cols=84  Identities=23%  Similarity=0.319  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHHhhcccC---Cc---HHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--Cee
Q psy16753         57 DTLTVHEHMTLMARLKMDRN---LH---HVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SRV  127 (156)
Q Consensus        57 ~~ltv~e~l~~~~~~~~~~~---~~---~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~il  127 (156)
                      ..+||.|++.|...+.....   ..   ..+..+++ +.++.+||... .++.+.+|||||+||+.||++|+.+|  +++
T Consensus       450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll  528 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY  528 (972)
T ss_dssp             HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred             hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence            45799999988655431110   00   01233444 45899999864 79999999999999999999999985  666


Q ss_pred             EEecCCCCCCCCchhh
Q psy16753        128 VKITDSQPRGKWPISA  143 (156)
Q Consensus       128 l~~~Dep~~g~~~~~~  143 (156)
                      |  |||||+||||...
T Consensus       529 I--LDEPTagLdp~~~  542 (972)
T 2r6f_A          529 V--LDEPSIGLHQRDN  542 (972)
T ss_dssp             E--EECTTTTCCGGGH
T ss_pred             E--EeCcccCCCHHHH
Confidence            5  9999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.41  E-value=1.2e-12  Score=105.36  Aligned_cols=34  Identities=38%  Similarity=0.355  Sum_probs=32.2

Q ss_pred             CChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCch
Q psy16753        106 LSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPI  141 (156)
Q Consensus       106 LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~  141 (156)
                      ||||||||++||++|+.+|  +++|  |||||+|||+.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~Ll--LDEpt~~LD~~  331 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVV--FDEVDAGIGGA  331 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEE--ESSTTTTCCHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEE--EECCCCCCCHH
Confidence            5999999999999999999  9887  99999999976

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.38  E-value=1.7e-13  Score=96.66  Aligned_cols=42  Identities=29%  Similarity=0.294  Sum_probs=37.7

Q ss_pred             ccCccCcCChHHHHHHHHH------HHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         99 KNSVLNVLSGGERKRVALA------VQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        99 ~~~~~~~LSgGerqrv~LA------~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++.+||||||||++||      +|++.+|++++  +||||+|+|+.+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lll--LDEPt~~LD~~~   98 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI--LDEPTPYLDEER   98 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEE--EESCSCTTCHHH
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEE--EECCCccCCHHH
Confidence            4678899999999999886      89999999888  999999999763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.36  E-value=5.8e-13  Score=116.89  Aligned_cols=57  Identities=25%  Similarity=0.245  Sum_probs=50.3

Q ss_pred             HHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~Dep~~g~~~~~~  143 (156)
                      +..++++.++|.. ..++++.+|||||||||.||++|+.+|   +++|  |||||+|+|+.+.
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI--LDEPTsGLD~~~~  884 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI--LDEPTTGLHVDDI  884 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEE--EECTTTTCCHHHH
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEE--EECCCCCCCHHHH
Confidence            4568899999987 679999999999999999999999875   8777  9999999997743

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.35  E-value=2e-15  Score=112.10  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=58.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHH-HHH----HHhhcccCCcHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHM-TLM----ARLKMDRNLHHVER   82 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l-~~~----~~~~~~~~~~~~~~   82 (156)
                      |++++|+|+ .|    ++|+|..  .++..  ...++.+||+||++        .+|+ .+.    ....  ...    .
T Consensus        37 TLl~~l~Gl-~p----~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~--~~~----~   95 (208)
T 3b85_A           37 YLAMAKAVQ-AL----QSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALR--DMV----E   95 (208)
T ss_dssp             HHHHHHHHH-HH----HTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHT--TTS----C
T ss_pred             HHHHHHhcC-CC----cCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHH--Hhc----c
Confidence            789999999 75    8999942  22221  13356799999976        2333 111    0111  000    1


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCC
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRG  137 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g  137 (156)
                      .+.+.++++. ++             |||||++|||||+.+|+++|  |||||+|
T Consensus        96 ~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lll--LDEPts~  134 (208)
T 3b85_A           96 PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVI--LDEAQNT  134 (208)
T ss_dssp             TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEE--ECSGGGC
T ss_pred             HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEE--EeCCccc
Confidence            1245566665 43             99999999999999999888  9999999

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.34  E-value=3.2e-15  Score=121.26  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++|+|+|++.+    ++|+|.++|.+.+.      .++++|++ .++.+++.|+..+..      .      ...+.+
T Consensus        83 STLln~L~Gl~~p----~~GsI~~~g~~~t~------~~~v~q~~-~~~~ltv~D~~g~~~------~------~~~~~~  139 (413)
T 1tq4_A           83 SSFINTLRGIGNE----EEGAAKTGVVEVTM------ERHPYKHP-NIPNVVFWDLPGIGS------T------NFPPDT  139 (413)
T ss_dssp             HHHHHHHHTCCTT----STTSCCCCC----C------CCEEEECS-SCTTEEEEECCCGGG------S------SCCHHH
T ss_pred             HHHHHHHhCCCCc----cCceEEECCeecce------eEEecccc-ccCCeeehHhhcccc------h------HHHHHH
Confidence            3788999998874    89999999987642      27888875 466777777653221      0      124678


Q ss_pred             HHHHcCCCccccCccCcCChH--HHHHHHHHHHHhc----------CCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGG--ERKRVALAVQVSQ----------DCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgG--erqrv~LA~AL~~----------~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+. +..+. +|+|  |+||+.||+|++.          +|++++  +||||+|+|+.++.
T Consensus       140 ~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll--LDEPtsgLD~~~~~  203 (413)
T 1tq4_A          140 YLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI--TNEADGEPQTFDKE  203 (413)
T ss_dssp             HHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH--HHHHTTCCTTCCHH
T ss_pred             HHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc--cCcccccCCHHHHH
Confidence            8999998754 33344 9999  9999999999999          888776  99999999987543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.32  E-value=4.1e-13  Score=117.00  Aligned_cols=59  Identities=29%  Similarity=0.321  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCCCchhh
Q psy16753         82 RARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGKWPISA  143 (156)
Q Consensus        82 ~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~~~~~~  143 (156)
                      ..++++ .++.+|+... .++.+.+|||||+|||.||++|+.+|+  ++|  |||||+||||...
T Consensus       356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llI--LDEPT~~Ld~~~~  417 (842)
T 2vf7_A          356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYV--LDEPSAGLHPADT  417 (842)
T ss_dssp             HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEE--EECTTTTCCGGGH
T ss_pred             HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEE--eeCccccCCHHHH
Confidence            445565 6889999865 799999999999999999999999995  665  9999999998753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.27  E-value=8.7e-14  Score=108.65  Aligned_cols=116  Identities=12%  Similarity=0.081  Sum_probs=87.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cc--cceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LM--VKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~--~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~   78 (156)
                      .|++++|+|++.+    ++|+|.+.|.++.+.       .+  +..++|++|+.. .++..++.+++.++...    ...
T Consensus       114 TTll~~Lag~l~~----~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~----~~d  185 (302)
T 3b9q_A          114 TTSLGKLAHRLKN----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE----GYD  185 (302)
T ss_dssp             HHHHHHHHHHHHH----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHT----TCS
T ss_pred             HHHHHHHHHHHHH----cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHc----CCc
Confidence            3788999999885    799999999987542       12  245899999987 77888899998765321    100


Q ss_pred             HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                              ..+++.+|+.+..++++.+||   +||+.||+|++.+|+-.++++| ||+|+|+..+.
T Consensus       186 --------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~  239 (302)
T 3b9q_A          186 --------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA  239 (302)
T ss_dssp             --------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred             --------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence                    134677788777788889999   9999999999999994444499 99999987553

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.23  E-value=3.5e-13  Score=107.54  Aligned_cols=116  Identities=12%  Similarity=0.081  Sum_probs=88.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cc--cceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LM--VKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~--~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~   78 (156)
                      .|++++|+|++.+    ++|+|.+.|.++.+.       .+  +..++|++|+.. .++..++.+++.++...    ...
T Consensus       171 TTll~~Lag~l~~----~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~----~~d  242 (359)
T 2og2_A          171 TTSLGKLAHRLKN----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE----GYD  242 (359)
T ss_dssp             HHHHHHHHHHHHH----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHT----TCS
T ss_pred             HHHHHHHHhhccc----cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhC----CCH
Confidence            3788999999885    799999999987542       12  345899999987 77888899998765321    110


Q ss_pred             HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                              ..+++.+|+.+..++++.+||   +||+.||+|++.+|+-.++++| ||+|+|+..+.
T Consensus       243 --------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~  296 (359)
T 2og2_A          243 --------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA  296 (359)
T ss_dssp             --------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred             --------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence                    134667788777778888999   9999999999999994444599 99999987553

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.23  E-value=3.2e-12  Score=102.06  Aligned_cols=42  Identities=19%  Similarity=0.168  Sum_probs=38.2

Q ss_pred             cCccCcCChHHHHHHHHHHHHh------cCCCeeEEecCCCCCCCCchhh
Q psy16753        100 NSVLNVLSGGERKRVALAVQVS------QDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~------~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+||||||||++||+||+      .+|+++|  |||||+|+||.++
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~ll--lDEpt~~LD~~~~  321 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFF--IDEGFSSLDTENK  321 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEE--EESCCTTSCHHHH
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEE--EeCCCccCCHHHH
Confidence            5788999999999999999999      7999888  9999999998744

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.21  E-value=5.7e-14  Score=110.18  Aligned_cols=104  Identities=12%  Similarity=0.055  Sum_probs=76.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++++|+|++.+    +.|.              ..+++++|+..+++. |+.+++.+...    .+.......+.+.+.
T Consensus       105 TL~~~L~gll~~----~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~~~d~~~~~~~  161 (312)
T 3aez_A          105 TTARVLQALLAR----WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPESYNRRALMRF  161 (312)
T ss_dssp             HHHHHHHHHHHT----STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGGGBCHHHHHHH
T ss_pred             HHHHHHHhhccc----cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCChHHHHHHHHHH
Confidence            567777777764    3442              358999999888887 89888753211    111112223456778


Q ss_pred             HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753         90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW  139 (156)
Q Consensus        90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~  139 (156)
                      ++.++ ....+.++..|||||+||+++|+|++.+|+++|  +|||+...|
T Consensus       162 L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilI--lDep~~~~d  208 (312)
T 3aez_A          162 VTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILI--LEGLNVLQT  208 (312)
T ss_dssp             HHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEE--EECTTTTCC
T ss_pred             HHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEE--ECCccccCC
Confidence            88887 545567788999999999999999999999887  999999986

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.17  E-value=1.6e-11  Score=88.59  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=34.8

Q ss_pred             cCccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCch
Q psy16753        100 NSVLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~  141 (156)
                      .+.+..||||||||++||++++.    +|+++|  ||||++|+|+.
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~ll--LDEp~a~LD~~  102 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYL--FDEIDAHLDDA  102 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHH
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEE--ECCCccCCCHH
Confidence            45678999999999999999974    468777  99999999975

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.05  E-value=9.7e-11  Score=91.79  Aligned_cols=41  Identities=27%  Similarity=0.296  Sum_probs=36.9

Q ss_pred             ccCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCch
Q psy16753         99 KNSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        99 ~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~  141 (156)
                      .++++.+||+|||||++||+||+    .+|+++|  |||||+|+|+.
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~ll--lDEp~~~LD~~  257 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYV--LDEVDSPLDDY  257 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEE--EESCCSSCCHH
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCHH
Confidence            56778999999999999999997    5788887  99999999976

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.04  E-value=4.9e-11  Score=94.15  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             ccCccCcCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         99 KNSVLNVLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        99 ~~~~~~~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .++++.+|||||||      |+++|+|++.+|+++|  |||||+|+||.
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~ll--lDEp~~~LD~~  288 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI--LDEPTPYLDEE  288 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEE--EECCCTTCCHH
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEE--EECCCCCCCHH
Confidence            46778999999999      5677788888999887  99999999975

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.03  E-value=5.3e-11  Score=86.07  Aligned_cols=44  Identities=9%  Similarity=-0.150  Sum_probs=39.3

Q ss_pred             ccccCccCcCChHHHHHHHHHHH-----HhcCCCeeEEecCC--CCCCCCchh
Q psy16753         97 KCKNSVLNVLSGGERKRVALAVQ-----VSQDCSRVVKITDS--QPRGKWPIS  142 (156)
Q Consensus        97 ~~~~~~~~~LSgGerqrv~LA~A-----L~~~p~ill~~~De--p~~g~~~~~  142 (156)
                      +..++++.+||||||||++||+|     ++.+|+++|  +||  ||+++|+..
T Consensus        68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~lli--lDEigp~~~ld~~~  118 (178)
T 1ye8_A           68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII--IDEIGKMELFSKKF  118 (178)
T ss_dssp             SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEE--ECCCSTTGGGCHHH
T ss_pred             ccccccccCcCHHHHHHHHHHhhccccccccCCCEEE--EeCCCCcccCCHHH
Confidence            35678889999999999999996     999999887  999  999999753

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.02  E-value=1.3e-10  Score=96.48  Aligned_cols=41  Identities=37%  Similarity=0.353  Sum_probs=36.6

Q ss_pred             CccCcC-ChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchhh
Q psy16753        101 SVLNVL-SGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       101 ~~~~~L-SgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~~  143 (156)
                      +++.+| ||||+||++||+|++.+|  +++|  +||||+|+|+.++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~li--lDEp~~gld~~~~  435 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVV--FDEVDAGIGGAAA  435 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEE--ECSCSSSCCTHHH
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEE--EeCCcCCCCHHHH
Confidence            456777 999999999999999999  9887  9999999998743

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.91  E-value=2.8e-10  Score=90.77  Aligned_cols=40  Identities=23%  Similarity=0.178  Sum_probs=36.3

Q ss_pred             cCccC-cCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCch
Q psy16753        100 NSVLN-VLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       100 ~~~~~-~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~  141 (156)
                      +++++ .||+|||||++||++|+         .+|+++|  |||||+|+|+.
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLL--LDEp~s~LD~~  308 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLL--LDDFTAELDPH  308 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEE--ECCGGGCCCHH
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEE--EeCccccCCHH
Confidence            45566 79999999999999999         8999888  99999999976

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.82  E-value=5.7e-09  Score=83.22  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=33.8

Q ss_pred             CccCcCChHHHHHHH------HHHHHhcC-CCeeEEecCCCCCCCCch
Q psy16753        101 SVLNVLSGGERKRVA------LAVQVSQD-CSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       101 ~~~~~LSgGerqrv~------LA~AL~~~-p~ill~~~Dep~~g~~~~  141 (156)
                      .++..|||||+||++      +|++++.+ |+++|  +||||+|+|+.
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~ll--lDEp~~~LD~~  321 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECII--LDEPTVYLDEN  321 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEE--EESTTTTCCHH
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEE--EeCCCCcCCHH
Confidence            556789999999884      56888999 99887  99999999965

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.79  E-value=4.3e-10  Score=87.79  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------c--cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------M--VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH   79 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~--~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~   79 (156)
                      .|++++|+|++.+    ++|+|.+.|.++.+..       +  +..+++++|+...++..++.+++.+.....    .. 
T Consensus       116 TTll~~Lagll~~----~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~----~d-  186 (304)
T 1rj9_A          116 TTTIAKLGRYYQN----LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARG----YD-  186 (304)
T ss_dssp             HHHHHHHHHHHHT----TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHT----CS-
T ss_pred             HHHHHHHHHHHHh----cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCC----CC-
Confidence            3788899999885    7999999999875321       1  345899999988777778888876542110    00 


Q ss_pred             HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                             ..+++..|..+..+..   ++...+||+.||||++.+|+.+++.+| |+.|.+..
T Consensus       187 -------~~llDt~G~~~~~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~  237 (304)
T 1rj9_A          187 -------LLFVDTAGRLHTKHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL  237 (304)
T ss_dssp             -------EEEECCCCCCTTCHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH
T ss_pred             -------EEEecCCCCCCchHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH
Confidence                   0123334443322233   444558999999999999998887899 67776533

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.75  E-value=5.8e-09  Score=84.59  Aligned_cols=40  Identities=28%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             cCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCch
Q psy16753        100 NSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+++..|||||||+++||++|+    .+|+++|  ||||++|||+.
T Consensus       328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~ll--lDEp~~~LD~~  371 (430)
T 1w1w_A          328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFV--LDEVDAALDIT  371 (430)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEE--ESSTTTTCCHH
T ss_pred             ccccccCCcchHHHHHHHHHHHHhcCCCCCEEE--eCCCcccCCHH
Confidence            3456679999999999999999    5788887  99999999975

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.72  E-value=2.2e-09  Score=76.72  Aligned_cols=48  Identities=17%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ..+.....+ .....|+|+|||++||+|++.+|++++  +||||+|+|+..
T Consensus        71 ~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~ll--lDEPt~~Ld~~~  118 (171)
T 4gp7_A           71 QLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVV--FNLPEKVCQERN  118 (171)
T ss_dssp             HTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEE--ECCCHHHHHHHH
T ss_pred             hCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEE--EeCCHHHHHHHH
Confidence            345544443 334569999999999999999999887  999999999873

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.59  E-value=2.5e-10  Score=89.16  Aligned_cols=75  Identities=8%  Similarity=-0.032  Sum_probs=48.2

Q ss_pred             eEecCCCCCCCCCCHHH-HHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCC
Q psy16753         47 GFVPQHDLTVDTLTVHE-HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS  125 (156)
Q Consensus        47 g~v~Q~~~~~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~  125 (156)
                      ++++|.+.++.. |+.+ |+.+..      ...     ..+.+.++.+ +....+  ...||||||||   |||++.+|+
T Consensus       156 ~~v~q~~~lf~~-ti~~~ni~~~~------~~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~  217 (305)
T 2v9p_A          156 SFANHKSHFWLA-SLADTRAALVD------DAT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPP  217 (305)
T ss_dssp             CGGGTTSGGGGG-GGTTCSCEEEE------EEC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCC
T ss_pred             EEecCccccccc-cHHHHhhccCc------ccc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCC
Confidence            466777666543 5554 543310      011     1334455554 444444  77899999999   999999999


Q ss_pred             eeEEecCCCCCCCCchhhhe
Q psy16753        126 RVVKITDSQPRGKWPISALF  145 (156)
Q Consensus       126 ill~~~Dep~~g~~~~~~~~  145 (156)
                      ++|      |+++|+.+...
T Consensus       218 iLl------Ts~LD~~~~~~  231 (305)
T 2v9p_A          218 LLV------TSNIDVQAEDR  231 (305)
T ss_dssp             EEE------EESSCSTTCGG
T ss_pred             EEE------ECCCCHHHHHH
Confidence            875      99999876543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.54  E-value=5.8e-08  Score=76.42  Aligned_cols=27  Identities=11%  Similarity=0.080  Sum_probs=26.0

Q ss_pred             hHHHHHHHHHHHHhcCCCeeEEecCCCCC
Q psy16753        108 GGERKRVALAVQVSQDCSRVVKITDSQPR  136 (156)
Q Consensus       108 gGerqrv~LA~AL~~~p~ill~~~Dep~~  136 (156)
                      ||++||+.||+||..+|+++|  +|||++
T Consensus       225 gg~~~r~~la~aL~~~p~ili--ldE~~~  251 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRII--LGELRS  251 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEE--ECCCCS
T ss_pred             CChhHHHHHHHHhhhCCCEEE--EcCCCh
Confidence            899999999999999999888  999997

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.47  E-value=9e-11  Score=91.38  Aligned_cols=112  Identities=13%  Similarity=-0.013  Sum_probs=52.5

Q ss_pred             HHHHHHHhhh-hhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQR-VVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~-~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|. ..    |++| |.++|.++......+.+++++|.......++++++..++.....         .+...
T Consensus        32 STLl~~L~g~~~~----~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~---------~e~~~   97 (301)
T 2qnr_A           32 STLINSLFLTDLY----PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC---------RDCFK   97 (301)
T ss_dssp             HHHHHHHHC-----------------------------CEEEEC---CCEEEEEEEEC--------------------CT
T ss_pred             HHHHHHHhCCCcc----CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc---------HHHHH
Confidence            3778888886 44    4788 88888776432223457888988766667777777655322110         00011


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCC-CCCchh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPR-GKWPIS  142 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~-g~~~~~  142 (156)
                      .+.+.  +.+..+++++++|||+|||+.+|+|++      ++++|||++ |+|+..
T Consensus        98 ~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~------ll~ldePt~~~Ld~~~  145 (301)
T 2qnr_A           98 TIISY--IDEQFERYLHDESGLNRRHIIDNRVHC------CFYFISPFGHGLKPLD  145 (301)
T ss_dssp             THHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE------EEEEECSSSSSCCHHH
T ss_pred             HHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh------eeeeecCcccCCCHHH
Confidence            11111  112345778899999999998888874      335999998 599864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.47  E-value=3.1e-09  Score=79.92  Aligned_cols=101  Identities=13%  Similarity=0.001  Sum_probs=65.6

Q ss_pred             cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc
Q psy16753         43 VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ  122 (156)
Q Consensus        43 ~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~  122 (156)
                      ++.+++++|+. +++.+++.+++.+......... ......+.+.+.++.+  .+..+.++..||+|++||+.+ ++++.
T Consensus        58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~  132 (245)
T 2jeo_A           58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVY  132 (245)
T ss_dssp             GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEEC
T ss_pred             CCceEEEeCCc-CccccCHhHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEec
Confidence            55688999985 6678899988765432211000 0111122344455543  344567888999999999988 57888


Q ss_pred             CCCeeEEecCCCCCCCC------chhhheeeccc
Q psy16753        123 DCSRVVKITDSQPRGKW------PISALFITTAS  150 (156)
Q Consensus       123 ~p~ill~~~Dep~~g~~------~~~~~~~~~~~  150 (156)
                      +|+++|  +|||....+      ...++.++++.
T Consensus       133 ~~~~li--lDg~~~~~~~~l~~~~~~~i~v~th~  164 (245)
T 2jeo_A          133 PADVVL--FEGILVFYSQEIRDMFHLRLFVDTDS  164 (245)
T ss_dssp             CCSEEE--EECTTTTTSHHHHTTCSEEEEEECCH
T ss_pred             CCCEEE--EeCccccccHHHHHhcCeEEEEECCH
Confidence            999887  999988765      23456666554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.38  E-value=3.9e-08  Score=78.28  Aligned_cols=101  Identities=16%  Similarity=0.057  Sum_probs=66.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEEC-CEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLN-GLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~-G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      |++|+|+|....   ++.|+|.++ |..... .....+++++|...+++..++.++.     +   .........+.+.+
T Consensus       230 TLln~L~g~~~~---~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~~-----l---~~l~~~e~~~~~~e  297 (358)
T 2rcn_A          230 SLLNALLGLQNE---ILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREFG-----L---WHLEPEQITQGFVE  297 (358)
T ss_dssp             HHHHHHHCCSSC---CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----C---CCCCHHHHHHTSGG
T ss_pred             HHHHHHhccccc---cccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHhh-----h---cCCCHHHHHHHHHH
Confidence            677777777661   479999987 655421 2345689999988777777776631     1   12334445566788


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcC
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD  123 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~  123 (156)
                      +++.+++.+..++...++| |++||++||++++..
T Consensus       298 ~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~  331 (358)
T 2rcn_A          298 FHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAE  331 (358)
T ss_dssp             GGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCH
T ss_pred             HHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCH
Confidence            8999999988999999999 999999999987643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.31  E-value=1.7e-11  Score=91.18  Aligned_cols=113  Identities=6%  Similarity=-0.094  Sum_probs=67.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCH-HHHHHHHHHhh-cccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTV-HEHMTLMARLK-MDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv-~e~l~~~~~~~-~~~~~~~~~~~   83 (156)
                      |++++|+|++     |  |+|.+ |.+++..    ..++.++|+||++..|+.++. .+++.+ ..+. ...+..    .
T Consensus        38 TLl~~L~g~~-----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~g~~----~  104 (218)
T 1z6g_A           38 TLIKKLLNEF-----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEY-DNYANNFYGTL----K  104 (218)
T ss_dssp             HHHHHHHHHS-----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEE-EEETTEEEEEE----H
T ss_pred             HHHHHHHhhC-----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhh-hhcccccCCCc----H
Confidence            5677777754     2  88999 8766422    124567899997655432210 000000 0000 001111    1


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHH-----HHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVAL-----AVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~L-----A~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..++++++...+. ..+   .++||||+||+++     +++++.+|++++  ||||++++|..
T Consensus       105 ~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~--Lde~~~~~d~~  161 (218)
T 1z6g_A          105 SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDV--LLSRLLTRNTE  161 (218)
T ss_dssp             HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHH--HHHHHHHTCCC
T ss_pred             HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH--HHHHHHhcCCC
Confidence            2455666654431 222   5799999999999     788998898876  99999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.21  E-value=2.8e-09  Score=77.94  Aligned_cols=85  Identities=12%  Similarity=-0.050  Sum_probs=61.0

Q ss_pred             eeeEecCCCCCC--CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHH----HHHHHHH
Q psy16753         45 VSGFVPQHDLTV--DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER----KRVALAV  118 (156)
Q Consensus        45 ~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGer----qrv~LA~  118 (156)
                      .+++++|+...+  ..+++.++..+..  ..    ......+.+.+.++.+++.+..+.++.++|+|++    ||+.+|+
T Consensus        33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~  106 (211)
T 3asz_A           33 RVALLPMDHYYKDLGHLPLEERLRVNY--DH----PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP  106 (211)
T ss_dssp             GEEEEEGGGCBCCCTTSCHHHHHHSCT--TS----GGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCS
T ss_pred             CeEEEecCccccCcccccHHHhcCCCC--CC----hhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCc
Confidence            378899987665  4578877654321  11    1111234566778888887777778899999974    6888889


Q ss_pred             HHhcCCCeeEEecCCCCCC
Q psy16753        119 QVSQDCSRVVKITDSQPRG  137 (156)
Q Consensus       119 AL~~~p~ill~~~Dep~~g  137 (156)
                      +++.+|.+++  +|||+++
T Consensus       107 ~li~~~~ll~--~de~~~~  123 (211)
T 3asz_A          107 VVILEGILVL--YPKELRD  123 (211)
T ss_dssp             EEEEESTTTT--SSHHHHT
T ss_pred             EEEEeehhhc--cCHHHHH
Confidence            9999998876  8999999

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.15  E-value=2.5e-08  Score=84.46  Aligned_cols=58  Identities=12%  Similarity=0.014  Sum_probs=37.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecC--c----ccccceeeEecCCCCCCCCCCHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--K----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA   69 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~   69 (156)
                      .|++++|+|+..|   +++|.|+++|.++.  .    ..++..++|++|+..+++..++.+++.+..
T Consensus        59 STLL~~I~Gl~~P---~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~  122 (608)
T 3szr_A           59 SSVLEALSGVALP---RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ  122 (608)
T ss_dssp             HHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred             HHHHHHHhCCCCC---CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence            3788888888654   26999999999852  1    245678999999998888888988887653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.15  E-value=5.6e-07  Score=74.73  Aligned_cols=47  Identities=11%  Similarity=-0.062  Sum_probs=42.1

Q ss_pred             HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..++....+..+.+||+||+||+.+|+++..+|+++|  +| |++|+|+.
T Consensus       340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~lli--lD-p~~~Ld~~  386 (525)
T 1tf7_A          340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIA--ID-SLSALARG  386 (525)
T ss_dssp             HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EE-CHHHHTSS
T ss_pred             hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEE--Ec-ChHHHHhh
Confidence            4566666778889999999999999999999999888  99 99999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.12  E-value=3.6e-07  Score=74.58  Aligned_cols=101  Identities=15%  Similarity=0.020  Sum_probs=67.1

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCE---ecCc--------ccccceeeEecCC-CCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGL---EVEK--------NLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNL   77 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~---~i~~--------~~~~~~ig~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~~   77 (156)
                      |++++|+|+..+    +.|.|.+.|+   ++..        ..+++.++|++|+ ...++.+++.+++.+...+....  
T Consensus       172 TLl~~Iag~~~~----~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~--  245 (438)
T 2dpy_A          172 VLLGMMARYTRA----DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR--  245 (438)
T ss_dssp             HHHHHHHHHSCC----SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHhcccCC----CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence            678888888774    8999999998   4432        1245678999996 34456677777776654321100  


Q ss_pred             cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                                    .-......+ .+..||+|| ||++||   +.+|++        |+|+||...
T Consensus       246 --------------~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~--------t~glD~~~~  284 (438)
T 2dpy_A          246 --------------GQHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA--------TKGYPPSVF  284 (438)
T ss_dssp             --------------TCEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC--------SSSCCTTHH
T ss_pred             --------------CCCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc--------cccCCHHHH
Confidence                          001111122 267799999 999999   888875        899997643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.05  E-value=2.1e-10  Score=84.21  Aligned_cols=113  Identities=8%  Similarity=-0.047  Sum_probs=64.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhh---cccCCcHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK---MDRNLHHVERART   85 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~   85 (156)
                      .|++++|+|++..    ..+.+.+.+.+.. ...++.++|+||++..++.+++.+++.......   ...+.......++
T Consensus        34 STLl~~l~gl~~~----i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~  108 (207)
T 1znw_A           34 STVVRCLRERIPN----LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA  108 (207)
T ss_dssp             HHHHHHHHHHSTT----CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhhCCc----eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHH
Confidence            3788999998752    2222211111111 122456899999876655555554432110000   0011223334445


Q ss_pred             HHHH------HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753         86 VDAL------LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW  139 (156)
Q Consensus        86 ~~~~------l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~  139 (156)
                      +.+.      ++.+++....++++..||           +|+.+|++++  ||||++|++
T Consensus       109 ~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~--LDep~~~l~  155 (207)
T 1znw_A          109 AATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQD--LQARLIGRG  155 (207)
T ss_dssp             HHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHH--HHHHHHTTS
T ss_pred             HHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHH--HHHHHHhcC
Confidence            5554      556666666677778888           8999999887  999999984

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.00  E-value=1.2e-07  Score=73.76  Aligned_cols=101  Identities=12%  Similarity=-0.022  Sum_probs=63.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEE---CCEecCccc--cc-ceeeEecCCCCCC-----CCCCHHHHH--HHHH------H
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILL---NGLEVEKNL--MV-KVSGFVPQHDLTV-----DTLTVHEHM--TLMA------R   70 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~~--~~-~~ig~v~Q~~~~~-----~~ltv~e~l--~~~~------~   70 (156)
                      |++|+|+ +..    |++|+|.+   +|.+++...  .+ ..+||++|.+.+.     +.+|+ +++  .|..      .
T Consensus       180 TLln~l~-~~~----~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~  253 (302)
T 2yv5_A          180 SILSRLT-GEE----LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCK  253 (302)
T ss_dssp             HHHHHHH-SCC----CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHH
T ss_pred             HHHHHHH-Hhh----CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCC
Confidence            5666666 544    68999999   898876431  11 2579999998543     67788 776  3320      1


Q ss_pred             hhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHH
Q psy16753         71 LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAV  118 (156)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~  118 (156)
                      ++.  ..+......++.++++.++|.+ ..++++..|||..+|+++|||
T Consensus       254 ~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          254 YPD--CTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             STT--CCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111  0111223356889999999986 678899999999999999886

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.86  E-value=5.9e-08  Score=69.63  Aligned_cols=93  Identities=9%  Similarity=-0.048  Sum_probs=51.8

Q ss_pred             HHHHHHhhhhhcCCCCc---ceEEEECCEecCc------cccc-ceee----EecCCCCCCCCCCHHHHHHHHHHhhccc
Q psy16753         10 SGIHLLGQRVVHELSDV---DGQILLNGLEVEK------NLMV-KVSG----FVPQHDLTVDTLTVHEHMTLMARLKMDR   75 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~---~G~I~~~G~~i~~------~~~~-~~ig----~v~Q~~~~~~~ltv~e~l~~~~~~~~~~   75 (156)
                      |+++.|+|++.+    +   .|.|.++|.++..      ..++ +.+|    +++|+...|-.    +            
T Consensus        17 TL~~~L~~~~~~----~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~----~------------   76 (171)
T 2f1r_A           17 TLITRMMPILRE----RGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIR----R------------   76 (171)
T ss_dssp             HHHHHHHHHHHH----TTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEE----E------------
T ss_pred             HHHHHHHHHhhh----cCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEe----c------------
Confidence            567777777775    5   7999999987432      1233 3466    77777654400    0            


Q ss_pred             CCcHHHHHHHHHHHHHH-c-CCCccccCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753         76 NLHHVERARTVDALLKE-L-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV  127 (156)
Q Consensus        76 ~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il  127 (156)
                      . ... ....+.++++. + +++...   ...|||||+||++||||++.+|++.
T Consensus        77 ~-~~~-~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           77 V-SEE-EGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             C-CHH-HHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             C-Chh-hhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccC
Confidence            0 000 01123344444 3 332221   2349999999999999999999863

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.85  E-value=4.4e-06  Score=73.65  Aligned_cols=52  Identities=12%  Similarity=0.092  Sum_probs=36.3

Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++..+++.+...+....+|+||+|++.++++ +.+|+++|  ||||++|+||...
T Consensus       719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlL--LDEP~~GlD~~~~  770 (918)
T 3thx_B          719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVI--LDELGRGTSTHDG  770 (918)
T ss_dssp             EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEE--EESTTTTSCHHHH
T ss_pred             HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEE--EeCCCCCCCHHHH
Confidence            4555666666677788999999999999999 89999887  9999999998643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.82  E-value=2.3e-06  Score=74.15  Aligned_cols=36  Identities=14%  Similarity=-0.044  Sum_probs=31.0

Q ss_pred             cCChHHHHHHHHHHHH--hcCCCeeEEecCCC---CCCCCchh
Q psy16753        105 VLSGGERKRVALAVQV--SQDCSRVVKITDSQ---PRGKWPIS  142 (156)
Q Consensus       105 ~LSgGerqrv~LA~AL--~~~p~ill~~~Dep---~~g~~~~~  142 (156)
                      .+|+|+++++.+++++  +.+|+++|  +|||   |+++|+.+
T Consensus       635 g~S~~~~e~~~la~il~~a~~p~LlL--LDEpgrGTs~lD~~~  675 (765)
T 1ewq_A          635 GKSTFMVEMEEVALILKEATENSLVL--LDEVGRGTSSLDGVA  675 (765)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCTTEEEE--EESTTTTSCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEE--EECCCCCCCCcCHHH
Confidence            3689999999999999  99999887  9999   77778654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.73  E-value=1.9e-05  Score=60.05  Aligned_cols=25  Identities=12%  Similarity=-0.017  Sum_probs=22.2

Q ss_pred             HHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753        113 RVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       113 rv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      |++||+||..+|++++  +|||+   |+.+
T Consensus        88 ~~~la~aL~~~p~ill--lDEp~---D~~~  112 (261)
T 2eyu_A           88 ADALRAALREDPDVIF--VGEMR---DLET  112 (261)
T ss_dssp             HHHHHHHHHHCCSEEE--ESCCC---SHHH
T ss_pred             HHHHHHHHhhCCCEEE--eCCCC---CHHH
Confidence            7999999999999888  99999   6553

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.73  E-value=9.3e-06  Score=62.24  Aligned_cols=108  Identities=8%  Similarity=-0.030  Sum_probs=56.6

Q ss_pred             HHHHHHhhhhhcCCCCcce-EEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDG-QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G-~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      +++++|+|...+    .+| .|.+.+.+.......+.+..+.+...+    +..+++.... +      ......+.+.+
T Consensus        50 Tl~~~ia~~~~~----~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~-~------~~~~~~~~~~~  114 (296)
T 1cr0_A           50 TFVRQQALQWGT----AMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI-I------ENGKFDQWFDE  114 (296)
T ss_dssp             HHHHHHHHHHHH----TSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH-H------HHTHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC-C------CHHHHHHHHHH
Confidence            678888898885    557 675544433322222223333332211    1222332211 1      01112233444


Q ss_pred             HHHHcCCCccccCccCcCChHH-HHHHHHHHHHhcCCCeeEEecCCCCCC
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGE-RKRVALAVQVSQDCSRVVKITDSQPRG  137 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGe-rqrv~LA~AL~~~p~ill~~~Dep~~g  137 (156)
                      +++...+.  ....+.++|.++ +|++. |+++..+|+++|  +|||+..
T Consensus       115 ~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~lli--lDept~~  159 (296)
T 1cr0_A          115 LFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVII--LDHISIV  159 (296)
T ss_dssp             HHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEE--EEEEC--
T ss_pred             HhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEE--EcCcccc
Confidence            44333331  233446788888 66666 999999999887  9999993

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.70  E-value=1.4e-07  Score=76.52  Aligned_cols=111  Identities=16%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEec---------CCCCCC--CC----CCHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVP---------QHDLTV--DT----LTVHEHMT   66 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~---------Q~~~~~--~~----ltv~e~l~   66 (156)
                      .|++++|+|++.+    ++|+|.+.|.++...       .....+++.|         |++..+  ..    .|+.+++.
T Consensus       181 TTlL~allg~l~~----~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~  256 (418)
T 1p9r_A          181 STTLYAGLQELNS----SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQ  256 (418)
T ss_dssp             HHHHHHHHHHHCC----TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHH
T ss_pred             HHHHHHHHhhcCC----CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHH
Confidence            3788999998875    789999998876421       1223345544         776542  32    46777776


Q ss_pred             HHHHhhcc-cCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeE
Q psy16753         67 LMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV  128 (156)
Q Consensus        67 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill  128 (156)
                      ++..-+.. ...........+ +.+..+++.+..  .+..||||++||  ||++++.+|++..
T Consensus       257 a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          257 ASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence            54321110 001111111222 346778887653  678899999999  9999999999775

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.69  E-value=8.4e-07  Score=64.49  Aligned_cols=101  Identities=15%  Similarity=-0.005  Sum_probs=63.0

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.     ++| |.++|.+.... .+++.+||++|+..-  ..   +++   .+..    ...        
T Consensus        15 TTll~~l~g~~~-----~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g--~~---~~l---~~~~----~~~--------   68 (189)
T 2i3b_A           15 TTLIHKASEVLK-----SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG--TR---GPL---SRVG----LEP--------   68 (189)
T ss_dssp             HHHHHHHHHHHH-----HTT-CCCEEEECCEEETTSSEEEEEEEETTS--CE---EEE---EECC----CCC--------
T ss_pred             HHHHHHHHhhcc-----cCC-EEEcCEecchhHhhhceEEEEEEeccc--ce---ehh---hccc----ccC--------
Confidence            378889999887     378 99988876432 346778999987511  11   110   0000    000        


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHH-HHH---HHhcCCCeeEEecCC--CCCCCCc
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVA-LAV---QVSQDCSRVVKITDS--QPRGKWP  140 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~-LA~---AL~~~p~ill~~~De--p~~g~~~  140 (156)
                         ....-.+...++...+|+|||+++. +++   |++.+|+++|  +||  |+...|+
T Consensus        69 ---~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvli--lDE~g~~~~~~~  122 (189)
T 2i3b_A           69 ---PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV--IDEIGKMELFSQ  122 (189)
T ss_dssp             ---CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEE--ECCCSTTTTTCS
T ss_pred             ---CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEE--EeCCCccccccH
Confidence               0000112345566789999998884 444   5789999888  999  8877764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.69  E-value=2.9e-08  Score=74.50  Aligned_cols=118  Identities=12%  Similarity=0.010  Sum_probs=68.3

Q ss_pred             HHHHHHh---hhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh-h----cccCCcHHH
Q psy16753         10 SGIHLLG---QRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-K----MDRNLHHVE   81 (156)
Q Consensus        10 ~~l~~l~---g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~----~~~~~~~~~   81 (156)
                      |++++|+   |+..    ++.|+|.++|.+... .....+++++|+...++..++.+++...... .    ...+.....
T Consensus        42 Tl~k~La~~lg~~~----~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~  116 (246)
T 2bbw_A           42 TVCQRIAQNFGLQH----LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL  116 (246)
T ss_dssp             HHHHHHHHHHCCCC----EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH
T ss_pred             HHHHHHHHHhCCeE----ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH
Confidence            4556666   5544    578888877654321 1223345567777677777888887653211 0    001111111


Q ss_pred             HHHHHHHHHH--HcC------------CCccccCccCcCChHHHHHHHHHHHH-hcCCCeeEEecC----CCCCCCCchh
Q psy16753         82 RARTVDALLK--ELG------------LLKCKNSVLNVLSGGERKRVALAVQV-SQDCSRVVKITD----SQPRGKWPIS  142 (156)
Q Consensus        82 ~~~~~~~~l~--~~~------------L~~~~~~~~~~LSgGerqrv~LA~AL-~~~p~ill~~~D----ep~~g~~~~~  142 (156)
                        ..++.+.+  .++            +....++++..|||    |+   +|+ +.+|++++  +|    |||+|+|+.+
T Consensus       117 --~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~ll--lD~~~~EP~~~ld~~~  185 (246)
T 2bbw_A          117 --GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHG--IDDVTGEPLVQQEDDK  185 (246)
T ss_dssp             --HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTT--BCTTTCCBCBCCGGGS
T ss_pred             --HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccc--cccccccccccCCCCc
Confidence              12222221  122            22334677888999    55   677 99999887  99    9999999864


Q ss_pred             h
Q psy16753        143 A  143 (156)
Q Consensus       143 ~  143 (156)
                      .
T Consensus       186 ~  186 (246)
T 2bbw_A          186 P  186 (246)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.55  E-value=6.8e-05  Score=56.97  Aligned_cols=52  Identities=13%  Similarity=0.014  Sum_probs=43.2

Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCC--CCCch
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPR--GKWPI  141 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~--g~~~~  141 (156)
                      ...++++.+++.+..++.+..||+|+++++   ++++.+|+++|  +|||++  ++|+.
T Consensus        98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~liv--lDe~~~~~~~d~~  151 (279)
T 1nlf_A           98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMV--LDTLRRFHIEEEN  151 (279)
T ss_dssp             HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEE--EECGGGGCCSCTT
T ss_pred             hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEE--ECCHHHhcCCCcC
Confidence            355678888888777888999999997765   68888999887  999999  88874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.44  E-value=4.1e-06  Score=64.76  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             eeEecCCCCCCCCCCHHHHHHHHHH---hhcccCCcHHHHHHHHHHHHHHcCCC------c--cccCccCcCChHHHHHH
Q psy16753         46 SGFVPQHDLTVDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLL------K--CKNSVLNVLSGGERKRV  114 (156)
Q Consensus        46 ig~v~Q~~~~~~~ltv~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~L~------~--~~~~~~~~LSgGerqrv  114 (156)
                      +.+|+|+...++. +..+++.+...   ....++.....+...+.+.++.+.-.      .  ....+-..+||||+||+
T Consensus        65 ~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~  143 (290)
T 1odf_A           65 IGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC  143 (290)
T ss_dssp             EEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEEC
T ss_pred             EEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCcccccc
Confidence            4455999877654 67777765421   00000111111123445556655322      1  12344568999999999


Q ss_pred             HHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753        115 ALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       115 ~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .+|++.+.+|+++|  +||++.|+|+..
T Consensus       144 ~~a~~~~~~~~IlI--lEG~~~~ld~~~  169 (290)
T 1odf_A          144 PTGQKIKLPVDIFI--LEGWFLGFNPIL  169 (290)
T ss_dssp             SSCEEEESSCSEEE--EEESSTTCCCCC
T ss_pred             ccccceEcCCCEEE--EeCccccCCccc
Confidence            98733223899887  999999999854

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.44  E-value=6.1e-05  Score=66.63  Aligned_cols=41  Identities=20%  Similarity=0.106  Sum_probs=30.8

Q ss_pred             CccCcCChHHHHHHHHHHHH--hcCCCeeEEecCCCCCCCCchhh
Q psy16753        101 SVLNVLSGGERKRVALAVQV--SQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       101 ~~~~~LSgGerqrv~LA~AL--~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .....+|+|++++..+|+++  +++|+++|  +|||++|+||...
T Consensus       717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlL--LDEp~~GlD~~~~  759 (934)
T 3thx_A          717 SQLKGVSTFMAEMLETASILRSATKDSLII--IDELGRGTSTYDG  759 (934)
T ss_dssp             ------CHHHHHHHHHHHHHHHCCTTCEEE--EESCSCSSCHHHH
T ss_pred             hHHHhHhhhHHHHHHHHHHHHhccCCcEEE--EeCCCCCCCHHHH
Confidence            34567889998888888888  99999887  9999999998643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.44  E-value=3.6e-09  Score=82.79  Aligned_cols=120  Identities=6%  Similarity=-0.030  Sum_probs=61.1

Q ss_pred             HHHHHHhhhhhcC----CCCcceEEEECCEecCcc------------------cccceeeEe---cCCCCCCCCCCHHHH
Q psy16753         10 SGIHLLGQRVVHE----LSDVDGQILLNGLEVEKN------------------LMVKVSGFV---PQHDLTVDTLTVHEH   64 (156)
Q Consensus        10 ~~l~~l~g~~~~~----~~~~~G~I~~~G~~i~~~------------------~~~~~ig~v---~Q~~~~~~~ltv~e~   64 (156)
                      |++|.|.|.....    +.++.|+|.++|.++...                  ..++.++++   +|...+++..++.|+
T Consensus        19 Tll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~   98 (318)
T 1nij_A           19 TLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIEC   98 (318)
T ss_dssp             HHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTSCCCSEEEEEE
T ss_pred             HHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCCCCCCEEEEeC
Confidence            6788888876210    135899999999887432                  112234555   455444444444444


Q ss_pred             HHHHHHhhcccCC--cHH-HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCC
Q psy16753         65 MTLMARLKMDRNL--HHV-ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQ  134 (156)
Q Consensus        65 l~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep  134 (156)
                      ..++........+  ... .....+..++..+++.+..++. .++|+||+||+..+++++.+|++    +|||
T Consensus        99 ~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-~~ls~g~~Q~~~ad~ill~k~dl----~de~  166 (318)
T 1nij_A           99 TGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADRILLTKTDV----AGEA  166 (318)
T ss_dssp             ETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-HHCHHHHHHHHTCSEEEEECTTT----CSCT
T ss_pred             CCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-hhchHHHHHHHhCCEEEEECccc----CCHH
Confidence            3221000000000  000 0000111223333443333333 37899999999877778788874    3887

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.43  E-value=1.1e-06  Score=71.36  Aligned_cols=109  Identities=10%  Similarity=-0.052  Sum_probs=53.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++++|+|...+    ..|   .+|..+..  ......+++++|....+..+++++++.+......      ....+.+
T Consensus        45 STLln~L~g~~~~----~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i  111 (418)
T 2qag_C           45 STLINSLFLTDLY----SPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNCWQPV  111 (418)
T ss_dssp             HHHHHHHTTCCCC----CCC---CCSCC-----CCEEEEEECC------CEEEEEEECC-----------------CHHH
T ss_pred             HHHHHHHhCCCCC----CCC---CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhhHHHH
Confidence            3778888887663    233   12222111  1123457889998777777888887765432110      0000112


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeE-EecCCCC-CCCCchh
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV-KITDSQP-RGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill-~~~Dep~-~g~~~~~  142 (156)
                      .+.++            ..++.+++||+.||+|++.+|++-+ +++|||| .|+|+..
T Consensus       112 ~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d  157 (418)
T 2qag_C          112 IDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD  157 (418)
T ss_dssp             HHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred             HHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence            12221            1345677789999999999999321 2489999 6999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.40  E-value=3.3e-07  Score=65.66  Aligned_cols=105  Identities=8%  Similarity=0.002  Sum_probs=57.9

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      |+.++|+|.      +..|.|.++|.++... ..+..++|++|...  +..++.+++.+........+..     ..++.
T Consensus        24 Tl~~~La~~------~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~-----~~~~~   90 (191)
T 1zp6_A           24 TIAEALANL------PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF-----VILDG   90 (191)
T ss_dssp             HHHHHHHTC------SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE-----EEECS
T ss_pred             HHHHHHHhc------cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe-----EEEec
Confidence            445555554      3689999999876322 11233567776543  3456777765432211000000     00000


Q ss_pred             HHHHcCCCccc--cCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753         89 LLKELGLLKCK--NSVLNVLSGGERKRVALAVQVSQDCSRV  127 (156)
Q Consensus        89 ~l~~~~L~~~~--~~~~~~LSgGerqrv~LA~AL~~~p~il  127 (156)
                      ++..+++....  +..+..+|+|++|++.++|++..+|+++
T Consensus        91 ~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l  131 (191)
T 1zp6_A           91 VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL  131 (191)
T ss_dssp             CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred             cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence            11111222111  3456789999999999999999999866

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.36  E-value=0.00014  Score=52.20  Aligned_cols=57  Identities=9%  Similarity=-0.032  Sum_probs=45.2

Q ss_pred             HHHHHHHHcCCCcc-ccCccCcCChHHHHH-HHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         85 TVDALLKELGLLKC-KNSVLNVLSGGERKR-VALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        85 ~~~~~l~~~~L~~~-~~~~~~~LSgGerqr-v~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.+.++..++... ...++..+|+|++|+ +..+++++.+|+.++  +|||++++|+...
T Consensus       128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sal~~~~~  186 (210)
T 1pui_A          128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV--QVETFSSLKKQGV  186 (210)
T ss_dssp             HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE--EEEECBTTTTBSH
T ss_pred             HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC--ceEEEeecCCCCH
Confidence            45566677777643 356678899999999 899999999988766  8999999997643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.33  E-value=3.7e-06  Score=66.53  Aligned_cols=33  Identities=15%  Similarity=-0.032  Sum_probs=24.7

Q ss_pred             ChHHHHHHHHHHHHh-------cCCCeeEEecCCCCCCCCch
Q psy16753        107 SGGERKRVALAVQVS-------QDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       107 SgGerqrv~LA~AL~-------~~p~ill~~~Dep~~g~~~~  141 (156)
                      |.+++|++.++++++       .+|+++|  +|||++++|+.
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llI--lDs~ta~ld~~  247 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLI--VDSLTSHFRSE  247 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEE--EETSSTTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEE--EeCchHhhhhh
Confidence            345666666666666       6899877  99999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.17  E-value=3.8e-05  Score=59.86  Aligned_cols=99  Identities=12%  Similarity=0.098  Sum_probs=48.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEE---CCEecCcc-cccce-eeEecCCCCCCC----CCCHHHHHH--HHHH--hh----
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILL---NGLEVEKN-LMVKV-SGFVPQHDLTVD----TLTVHEHMT--LMAR--LK----   72 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~-~~~~~-ig~v~Q~~~~~~----~ltv~e~l~--~~~~--~~----   72 (156)
                      |++|+|+|...    +..|+|.+   +|..++.. ...+. .|+++|.+.+..    .+++ +++.  |...  +.    
T Consensus       188 TLln~L~g~~~----~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~  262 (307)
T 1t9h_A          188 SLLNAISPELG----LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCK  262 (307)
T ss_dssp             HHHHHHCC-----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCS
T ss_pred             HHHHHhccccc----ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhcc
Confidence            56677777665    58999999   88776542 12222 689999986654    5788 7773  3211  10    


Q ss_pred             cccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHH
Q psy16753         73 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR  113 (156)
Q Consensus        73 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqr  113 (156)
                      ........+....+.++++.+++.+...+....++.|++||
T Consensus       263 f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          263 FRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             STTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            00001111223468899999999875556667777888763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.17  E-value=4.1e-06  Score=64.89  Aligned_cols=89  Identities=7%  Similarity=-0.022  Sum_probs=51.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEE---CCEecCccc---ccceeeEecCCCC----------------CCCCCCHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILL---NGLEVEKNL---MVKVSGFVPQHDL----------------TVDTLTVHEHMT   66 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~~---~~~~ig~v~Q~~~----------------~~~~ltv~e~l~   66 (156)
                      .|++|+|+|+..    |++|+|.+   +|.+++...   ..+.+|+++|.+.                +++.+++ +|+.
T Consensus       183 STll~~l~g~~~----~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~  257 (301)
T 1u0l_A          183 SSLLNAINPGLK----LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCF  257 (301)
T ss_dssp             HHHHHHHSTTCC----CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCS
T ss_pred             HHHHHHhccccc----ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCc
Confidence            367888888877    48999999   898876421   1235799999874                3667777 7766


Q ss_pred             HHHHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCCh
Q psy16753         67 LMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSG  108 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg  108 (156)
                      |....+      ......++.++++.++|. ...++++..||.
T Consensus       258 ~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          258 FSDCNH------VDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             STTCCS------SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCCCcC------CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            532111      112235688999999995 667888888875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.11  E-value=0.00016  Score=64.47  Aligned_cols=48  Identities=19%  Similarity=0.045  Sum_probs=32.7

Q ss_pred             HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .+|+.+...+....+|+++++ +++|++++++|+++|  +|||++|+|+..
T Consensus       838 rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlL--LDEp~~Gtd~~d  885 (1022)
T 2o8b_B          838 RLGASDRIMSGESTFFVELSE-TASILMHATAHSLVL--VDELGRGTATFD  885 (1022)
T ss_dssp             ECC---------CHHHHHHHH-HHHHHHHCCTTCEEE--EECTTTTSCHHH
T ss_pred             HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE--EECCCCCCChHH
Confidence            344444444455677877765 999999999999887  999999999764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.07  E-value=0.00047  Score=54.66  Aligned_cols=20  Identities=15%  Similarity=0.179  Sum_probs=18.7

Q ss_pred             HHHHHHhcCCCeeEEecCCCCC
Q psy16753        115 ALAVQVSQDCSRVVKITDSQPR  136 (156)
Q Consensus       115 ~LA~AL~~~p~ill~~~Dep~~  136 (156)
                      +||+||..+|++++  +|||++
T Consensus       188 ~La~aL~~~Pdvil--lDEp~d  207 (356)
T 3jvv_A          188 ALRSALREDPDIIL--VGEMRD  207 (356)
T ss_dssp             HHHHHTTSCCSEEE--ESCCCS
T ss_pred             HHHHHhhhCcCEEe--cCCCCC
Confidence            99999999999998  999993

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.96  E-value=2.7e-05  Score=64.40  Aligned_cols=57  Identities=9%  Similarity=0.083  Sum_probs=43.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------c--ccceeeEecCCCCCCCCCCHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------L--MVKVSGFVPQHDLTVDTLTVHEHMTLMA   69 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~--~~~~ig~v~Q~~~~~~~ltv~e~l~~~~   69 (156)
                      .|++++|+|++.+    ++|+|.+.|.+..+.       .  .+..++|++|....++..++.+++.++.
T Consensus       307 TTLl~~LAgll~~----~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~  372 (503)
T 2yhs_A          307 TTTIGKLARQFEQ----QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK  372 (503)
T ss_dssp             HHHHHHHHHHHHH----TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh----cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence            3788899999885    789999988776431       1  2456899999987777788999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.74  E-value=0.00052  Score=54.22  Aligned_cols=101  Identities=15%  Similarity=0.057  Sum_probs=56.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH   78 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~   78 (156)
                      .|++++|+|+..+    +.|.|.+.|++....          ...+.+.+++|...     +..+.+......       
T Consensus        85 TTLl~~I~g~~~~----~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~-------  148 (347)
T 2obl_A           85 STLLGMICNGASA----DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA-------  148 (347)
T ss_dssp             HHHHHHHHHHSCC----SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH-------
T ss_pred             HHHHHHHhcCCCC----CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH-------
Confidence            3678999999874    799999988753210          11233566665432     222322211100       


Q ss_pred             HHHHHHHHHHHHHHcCCCccc--cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         79 HVERARTVDALLKELGLLKCK--NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        79 ~~~~~~~~~~~l~~~~L~~~~--~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                           ..+.+.....+ .+..  -+.+..||+|| |++++|   +.+|++        |+|+||...
T Consensus       149 -----~~~ae~~~~~~-~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--------t~Gldp~~~  197 (347)
T 2obl_A          149 -----TTIAEYFRDQG-KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--------RGGFPPSVF  197 (347)
T ss_dssp             -----HHHHHHHHTTT-CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--------BTTBCHHHH
T ss_pred             -----HHHHHHHHhcc-ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--------ccCCCHHHH
Confidence                 00111111111 1111  14578899999 899999   577764        899998753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.69  E-value=7.4e-05  Score=58.66  Aligned_cols=57  Identities=5%  Similarity=-0.056  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccce--eeEecCCCCCCCCCCHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKV--SGFVPQHDLTVDTLTVHEHMTLMA   69 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~--ig~v~Q~~~~~~~ltv~e~l~~~~   69 (156)
                      .|++++|+|++.+    ++|+|.+.|.++.+..       +++.  +.+++|....++..++.+++.++.
T Consensus       143 TTll~~Lag~l~~----~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~  208 (328)
T 3e70_C          143 TTTIAKLANWLKN----HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK  208 (328)
T ss_dssp             HHHHHHHHHHHHH----TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence            3788999999885    7999999999975421       2333  348899888888889999987653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.33  E-value=6.5e-06  Score=68.33  Aligned_cols=41  Identities=5%  Similarity=-0.107  Sum_probs=28.9

Q ss_pred             HHHHH--HhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCC
Q psy16753         10 SGIHL--LGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDL   54 (156)
Q Consensus        10 ~~l~~--l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~   54 (156)
                      |++++  ++|++.|    .+|.|+++|.+....  ..++.+|+++|++.
T Consensus        54 TL~~~~ll~Gl~~~----~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~   98 (525)
T 1tf7_A           54 LFSIQFLYNGIIEF----DEPGVFVTFEETPQDIIKNARSFGWDLAKLV   98 (525)
T ss_dssp             HHHHHHHHHHHHHH----CCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence            56677  6788875    689999999874321  23456789988753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.12  E-value=0.0055  Score=48.66  Aligned_cols=69  Identities=13%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             HHHHHHHhhhhhcCCCCc-ceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDV-DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~-~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++++|+|++.+    + +|.|.+.|.++. ...+..+++++|..                                  
T Consensus       150 TTll~~l~~~~~~----~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------------------------------  190 (372)
T 2ewv_A          150 STTIASMIDYINQ----TKSYHIITIEDPIE-YVFKHKKSIVNQRE----------------------------------  190 (372)
T ss_dssp             HHHHHHHHHHHHH----HSCCEEEEEESSCC-SCCCCSSSEEEEEE----------------------------------
T ss_pred             HHHHHHHHhhcCc----CCCcEEEEecccHh-hhhccCceEEEeee----------------------------------
Confidence            3788899998885    5 799977665553 22344567777631                                  


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP  135 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~  135 (156)
                           +++.      +..+      +.+|+.+|..+|++++  +|||+
T Consensus       191 -----~g~~------~~~~------~~~l~~~L~~~pd~il--ldE~~  219 (372)
T 2ewv_A          191 -----VGED------TKSF------ADALRAALREDPDVIF--VGEMR  219 (372)
T ss_dssp             -----BTTT------BSCS------HHHHHHHTTSCCSEEE--ESCCC
T ss_pred             -----cCCC------HHHH------HHHHHHHhhhCcCEEE--ECCCC
Confidence                 1221      1233      4689999999999887  99998

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.00  E-value=0.00085  Score=47.09  Aligned_cols=51  Identities=12%  Similarity=0.029  Sum_probs=38.6

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL   67 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~   67 (156)
                      .|++|+|+|++ |    ++|+|.++|.++.+....  ..+++|+..+| .+|+.+++.+
T Consensus        47 TTLlr~l~g~l-~----~~G~V~~~g~~i~~~~~~--~~~~~q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           47 TTLTRGMLQGI-G----HQGNVKSPTYTLVEEYNI--AGKMIYHFDLY-RLADPEELEF   97 (158)
T ss_dssp             HHHHHHHHHHT-T----CCSCCCCCTTTCEEEEEE--TTEEEEEEECT-TCSCTTHHHH
T ss_pred             HHHHHHHHHhC-C----CCCeEEECCEeeeeeccC--CCcceeccccc-cCCcHHHHHH
Confidence            37888999988 6    699999999887532111  13789998888 8999898854

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.92  E-value=0.0004  Score=50.50  Aligned_cols=17  Identities=12%  Similarity=0.059  Sum_probs=14.4

Q ss_pred             cCCCeeEEecCCCCCCCCc
Q psy16753        122 QDCSRVVKITDSQPRGKWP  140 (156)
Q Consensus       122 ~~p~ill~~~Dep~~g~~~  140 (156)
                      .+|++++  +|||++++|+
T Consensus       124 ~~~~lli--lDe~~~~l~~  140 (231)
T 4a74_A          124 RPVKLLI--VDSLTSHFRS  140 (231)
T ss_dssp             SCEEEEE--EETSSHHHHH
T ss_pred             CceeEEE--ECChHHHhcc
Confidence            3888777  9999999887

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.82  E-value=0.0043  Score=54.11  Aligned_cols=38  Identities=16%  Similarity=0.069  Sum_probs=25.9

Q ss_pred             ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753        102 VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      ....+|+++++ +..+...+.+|+++|  +|||++|+|+..
T Consensus       666 ~~stf~~e~~~-~~~il~~a~~psLlL--LDEp~~Gtd~~d  703 (800)
T 1wb9_A          666 GRSTFMVEMTE-TANILHNATEYSLVL--MDEIGRGTSTYD  703 (800)
T ss_dssp             ----CHHHHHH-HHHHHHHCCTTEEEE--EESCCCCSSSSH
T ss_pred             hhhhhhHHHHH-HHHHHHhccCCCEEE--EECCCCCCChhH
Confidence            34556777654 444555689999887  999999999763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.41  E-value=0.00028  Score=55.08  Aligned_cols=104  Identities=13%  Similarity=0.124  Sum_probs=56.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC--cHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL--HHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~   84 (156)
                      +++++|+|.+.....+++|.+..++.++...   ..+..+.+++|...+.+  ++.+++........ ...  ......+
T Consensus        66 TLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~  142 (334)
T 1in4_A           66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAK  142 (334)
T ss_dssp             HHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSC-CCC---------
T ss_pred             HHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccc
Confidence            6788888887432235778777666554321   12346889998776654  67776643322110 000  0112223


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHH
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA  117 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA  117 (156)
                      .+...++.+++.. ..+.+..||+|++||+.++
T Consensus       143 ~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~  174 (334)
T 1in4_A          143 SIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII  174 (334)
T ss_dssp             ------CCCEEEE-EESCGGGSCHHHHTTCSEE
T ss_pred             cccccCCCeEEEE-ecCCcccCCHHHHHhcCce
Confidence            4545566666644 5677889999999998543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.19  E-value=0.00014  Score=57.21  Aligned_cols=45  Identities=7%  Similarity=-0.038  Sum_probs=34.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVD   57 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~   57 (156)
                      .|++++|+|++.+    ++|+|.+.|.++...       ..+..+++++|++..+.
T Consensus        69 STLl~~l~g~~~~----~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~  120 (337)
T 2qm8_A           69 STTIDALGSLLTA----AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI  120 (337)
T ss_dssp             HHHHHHHHHHHHH----TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred             HHHHHHHHHhhhh----CCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence            4789999999985    799999999887432       23556899999877664

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.15  E-value=0.012  Score=45.42  Aligned_cols=42  Identities=5%  Similarity=-0.183  Sum_probs=16.6

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCC
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDL   54 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~   54 (156)
                      +++++++|.+.+   +..|.+.++|.+.... .....+++++|...
T Consensus        51 tl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~   93 (354)
T 1sxj_E           51 TRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYH   93 (354)
T ss_dssp             HHHHTHHHHHSC---TTCCC------------------CCEECSSE
T ss_pred             HHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccce
Confidence            567777773332   5789999999876422 22345678877654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.71  E-value=0.014  Score=41.87  Aligned_cols=36  Identities=17%  Similarity=0.009  Sum_probs=27.5

Q ss_pred             CcCChHH--HHHHHHHHHHhcC-CCeeEEecCCCCCCCCch
Q psy16753        104 NVLSGGE--RKRVALAVQVSQD-CSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       104 ~~LSgGe--rqrv~LA~AL~~~-p~ill~~~Dep~~g~~~~  141 (156)
                      ...|+++  ++++..+++++.+ |+++|  +|||++++|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~lli--iD~~~~~l~~~  121 (220)
T 2cvh_A           83 FTPSDFKEQRRVIGSLKKTVDSNFALVV--VDSITAHYRAE  121 (220)
T ss_dssp             ECCTTTSHHHHHHHHHHHHCCTTEEEEE--EECCCCCTTGG
T ss_pred             EecCCHHHHHHHHHHHHHHhhcCCCEEE--EcCcHHHhhhc
Confidence            3455554  5678888899876 88776  99999999874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.64  E-value=0.037  Score=42.75  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHH---HHHHHHhcCCCeeEEecCCCCC
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRV---ALAVQVSQDCSRVVKITDSQPR  136 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv---~LA~AL~~~p~ill~~~Dep~~  136 (156)
                      ...+..++..     +...|+|+.+++   .+++++..+++++|  +|+|..
T Consensus       153 ~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvI--iDtpg~  197 (306)
T 1vma_A          153 IWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVI--IDTAGR  197 (306)
T ss_dssp             HHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEE--EEECCC
T ss_pred             HHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEE--EECCCc
Confidence            4455666642     335689999999   89999999999887  999976

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.31  E-value=0.0021  Score=52.11  Aligned_cols=116  Identities=9%  Similarity=0.041  Sum_probs=60.4

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecC---cccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc--HHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE---KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH--HVERA   83 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~---~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~--~~~~~   83 (156)
                      .|++++|+|+..      .|      .++.   ....++.++|++|+..+++.+|+.+++.++........+.  .....
T Consensus        56 STLln~L~G~~l------~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~  123 (427)
T 2qag_B           56 STLMDTLFNTKF------EG------EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID  123 (427)
T ss_dssp             HHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred             HHHHHHHhCccc------cC------CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence            378888888842      22      2221   1122456899999987777777777765432110000000  01123


Q ss_pred             HHHHHHHHHc-CCC----ccccCc----c-------CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753         84 RTVDALLKEL-GLL----KCKNSV----L-------NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus        84 ~~~~~~l~~~-~L~----~~~~~~----~-------~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      ..+.++++.. ++.    ...+.+    +       ..++...   +.++++|..++++++  +|+|++.+.+.
T Consensus       124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~--Vi~KtD~Lt~~  192 (427)
T 2qag_B          124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIP--IIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEE--EESCGGGSCHH
T ss_pred             HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEE--EEcchhccchH
Confidence            3455556555 442    112222    1       2456555   789999998888777  99999988754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.85  E-value=5.3e-06  Score=63.46  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=57.2

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERART   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~   85 (156)
                      +++++|+|...      .|.|.++|.++...   ...+.++++||.. ...+.+++.+++......+        .. ..
T Consensus        59 tLakala~~~~------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r--------~~-~~  123 (274)
T 2x8a_A           59 LLAKAVANESG------LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--------SD-RE  123 (274)
T ss_dssp             HHHHHHHHHTT------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------------
T ss_pred             HHHHHHHHHcC------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc--------CC-Cc
Confidence            56677777654      36888888776432   1123456666653 2333344444432211000        00 00


Q ss_pred             HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753         86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP  135 (156)
Q Consensus        86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~  135 (156)
                      .    +  ......++.+.+|||||+||+.+++|+..+|++    +|+++
T Consensus       124 ~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~----LD~al  163 (274)
T 2x8a_A          124 T----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI----IDPAI  163 (274)
T ss_dssp             ---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG----SCHHH
T ss_pred             c----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhh----CCHhh
Confidence            0    0  123345667788999999999999999999984    48765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.70  E-value=0.041  Score=39.45  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=29.0

Q ss_pred             cCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCC--Cch
Q psy16753        105 VLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGK--WPI  141 (156)
Q Consensus       105 ~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~--~~~  141 (156)
                      ..|.++.++...+.+...+|+  ++|  +|||++++  |+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~lli--lDe~~~~~~~d~~  141 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLV--IDSVSALFLDKPA  141 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEE--EETGGGGSSSCGG
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEE--EECchHhhcCCHH
Confidence            448999988888888888999  887  99999777  764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.24  E-value=0.1  Score=41.08  Aligned_cols=57  Identities=9%  Similarity=-0.112  Sum_probs=35.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEec-CCCCC--CCCCCHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVP-QHDLT--VDTLTVHEHMTLMAR   70 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~-Q~~~~--~~~ltv~e~l~~~~~   70 (156)
                      |++++|+|++.    |++|.|.++|..-... ..+..+++++ |+...  +...|+.+++..+.+
T Consensus       190 Tll~~l~~~~~----~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~  250 (361)
T 2gza_A          190 TLMKALMQEIP----FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR  250 (361)
T ss_dssp             HHHHHHHTTSC----TTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred             HHHHHHHhcCC----CCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence            66777777766    4899999998532111 2456789998 76553  467899999987654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=92.07  E-value=0.027  Score=45.41  Aligned_cols=36  Identities=14%  Similarity=-0.042  Sum_probs=30.5

Q ss_pred             cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753        100 NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~  141 (156)
                      +.++.++|+|++|++.+|++|+.+|.++++      +++|+.
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl------NKlDl~  282 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL------NKVDLL  282 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE------ECCTTS
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE------ECCChh
Confidence            567788999999999999999999998884      666654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=91.23  E-value=0.0011  Score=48.07  Aligned_cols=30  Identities=7%  Similarity=-0.046  Sum_probs=23.3

Q ss_pred             CcCChHHHHHHHHH-HHHhcCCCeeEEecCCCC
Q psy16753        104 NVLSGGERKRVALA-VQVSQDCSRVVKITDSQP  135 (156)
Q Consensus       104 ~~LSgGerqrv~LA-~AL~~~p~ill~~~Dep~  135 (156)
                      ..+|+|++|++.++ ++++.++.+++  +|||.
T Consensus       110 ~~~~~g~~~~v~~~~~~~i~eg~~~l--~de~~  140 (208)
T 3c8u_A          110 RDIAIAGAAEVGPECRVAIIEGNYLL--FDAPG  140 (208)
T ss_dssp             TTEEEEEEEEECTTCCEEEEEESSTT--BCSTT
T ss_pred             ccCCCCCceEEcCCCcEEEECCceec--cCCch
Confidence            45799999999887 77777776654  89874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=88.50  E-value=0.00035  Score=52.90  Aligned_cols=98  Identities=9%  Similarity=0.032  Sum_probs=50.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhccc-CCcHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDR-NLHHVERAR   84 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~   84 (156)
                      +++++|++...      .|.|.+++.++...   .....+++++|... ..+.+++.|++.......... ........+
T Consensus        88 tl~~~i~~~~~------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~  161 (278)
T 1iy2_A           88 HLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ  161 (278)
T ss_dssp             HHHHHHHHHTT------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHH
T ss_pred             HHHHHHHHHcC------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH
Confidence            45566666543      67888877665321   11233556666642 344555656653322111000 000011112


Q ss_pred             HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCe
Q psy16753         85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSR  126 (156)
Q Consensus        85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~i  126 (156)
                      .+..             .+.+||||++|++.+++|++.+|++
T Consensus       162 ~~~~-------------ll~~lsgg~~~~~~i~~a~t~~p~~  190 (278)
T 1iy2_A          162 TLNQ-------------LLVEMDGFEKDTAIVVMAATNRPDI  190 (278)
T ss_dssp             HHHH-------------HHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred             HHHH-------------HHHHHhCCCCCCCEEEEEecCCchh
Confidence            2222             2346889999999999988888874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=87.77  E-value=0.11  Score=40.74  Aligned_cols=29  Identities=10%  Similarity=0.161  Sum_probs=21.0

Q ss_pred             cCChHHHHHHHHHHHH---hc--CCCeeEEecCCCC
Q psy16753        105 VLSGGERKRVALAVQV---SQ--DCSRVVKITDSQP  135 (156)
Q Consensus       105 ~LSgGerqrv~LA~AL---~~--~p~ill~~~Dep~  135 (156)
                      .+|+|++||..+++++   ..  ++++++  +|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ili--lde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIE--IESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEE--EECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEE--eCCCC
Confidence            4899999999999999   66  788887  89975

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=86.48  E-value=0.28  Score=37.50  Aligned_cols=58  Identities=12%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEE---CCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILL---NGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL   71 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~   71 (156)
                      |++++|+|++...  |++|+|.+   +|...... .++.++++ |....++.+++.+++.+...+
T Consensus        95 Tl~~~L~~~l~~~--~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l  155 (308)
T 1sq5_A           95 TTARVLQALLSRW--PEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL  155 (308)
T ss_dssp             HHHHHHHHHHTTS--TTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC--CCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence            6677777876610  37999999   88765322 23456788 766666778898888765443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=85.66  E-value=0.00041  Score=51.68  Aligned_cols=28  Identities=11%  Similarity=0.099  Sum_probs=21.1

Q ss_pred             CcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753        104 NVLSGGERKRVALAVQVSQDCSRVVKITDSQP  135 (156)
Q Consensus       104 ~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~  135 (156)
                      ..||||++|++.+++|+..+|++    +|++.
T Consensus       144 ~~l~g~~~~~~~i~~a~t~~p~~----ld~~l  171 (254)
T 1ixz_A          144 VEMDGFEKDTAIVVMAATNRPDI----LDPAL  171 (254)
T ss_dssp             HHHHTCCTTCCEEEEEEESCGGG----SCGGG
T ss_pred             HHHhCCCCCCCEEEEEccCCchh----CCHHH
Confidence            45788999988888888888874    46543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=85.02  E-value=0.38  Score=35.45  Aligned_cols=40  Identities=0%  Similarity=-0.146  Sum_probs=21.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----------cccceeeEecCC
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----------LMVKVSGFVPQH   52 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----------~~~~~ig~v~Q~   52 (156)
                      .|++++|+|++.|    ++|.|.++|.++...           ..+..++|++|.
T Consensus        41 STll~~i~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           41 STTMAAFVTALIP----DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             HHHHHHHHHHHSC----CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             HHHHHHHhccccc----CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            3678888888875    899999999876211           124557888864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=82.98  E-value=0.96  Score=37.14  Aligned_cols=43  Identities=16%  Similarity=0.108  Sum_probs=28.1

Q ss_pred             cCccCcCChHHHHHHHHHHHHh--c-----------C--CCeeEEecCCCCCCCCchhh
Q psy16753        100 NSVLNVLSGGERKRVALAVQVS--Q-----------D--CSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus       100 ~~~~~~LSgGerqrv~LA~AL~--~-----------~--p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++..+.+||||+|...+|.+-+  .           +  +.+=++++||. +-+|...+
T Consensus       374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~  431 (483)
T 3euj_A          374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSI  431 (483)
T ss_dssp             ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHH
T ss_pred             ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHH
Confidence            3346789999999777665422  2           1  23333459999 88887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	9e-09
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	6e-07
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	9e-07
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-06
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-05
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-05
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	6e-05
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	6e-05
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	7e-05
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-04
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	4e-04
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	0.002
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	0.003
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	0.003

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.2 bits (120), Expect = 9e-09
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 27  DGQILLNGLEV-EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           +G+I     +V       +    V Q       +TV+E++    ++   +     E  + 
Sbjct: 60  EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKR 116

Query: 86  VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           V    + L + +  N     LSGG+R+RVA+A
Sbjct: 117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 148

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 26  VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           VDGQ L    E E     +  G + QH   + + TV  ++ L   L    N    E  R 
Sbjct: 64  VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRR 120

Query: 86  VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           V  LL  +GL    +S  + LSGG+++RVA+A
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 44.4 bits (105), Expect = 9e-07
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 27  DGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
           +G++ ++ ++           +     GFV Q    +  LT  E++ L    K    +  
Sbjct: 59  EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118

Query: 80  VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQD 123
            ER +     LK   L  +  N   N LSGG+++RVA+A  ++ +
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 28  GQILLNGLEVEKNL--MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
           G + + G  V +    + K+  ++P+       +   E++  +A           E    
Sbjct: 57  GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEM 113

Query: 86  VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
           V+   +  GL +     ++  S G  +++ +A
Sbjct: 114 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 145

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 10  SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA 69
            G  ++  + ++ + D DGQ+ +      + L  ++   V QH      +TV E+  +M 
Sbjct: 56  EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL-TMVFQHFNLWSHMTVLEN--VME 112

Query: 70  RLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
                  L   +        L ++G+  + +      LSGG+++RV++A  ++ +   ++
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 27  DGQILLNGLEVEKNLMVKV----SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV-- 80
           +G++     ++      ++         Q    +  +TV E++ +      +  L+ +  
Sbjct: 58  EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY 117

Query: 81  --------ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
                   E       +L+ L L    +     LSGG+ K V +   +  +
Sbjct: 118 KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN 168

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 31  LLNGLEVEKNLMVKVSGFVPQHD--------LTVDTLTVHEHMTLMARLKMDRNLHHV-- 80
           ++ GLE      + +   +               D   V +   L   + +  N+     
Sbjct: 48  MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107

Query: 81  -------ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
                  E  + V  + + LGL +  N     LSGG+R+RVAL 
Sbjct: 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 27  DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
            G+I+ NG+ + K  +     F+P+  +    ++V +++  +A L   +          +
Sbjct: 55  KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-----VNKNEI 107

Query: 87  DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS 125
              L+ + +L  K  +   LS G  +RV LA  +  +  
Sbjct: 108 MDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAE 145

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (91), Expect = 7e-05
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 18  RVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD 74
             +  ++   G I   G  +E      +     ++ Q         V  ++TL    K  
Sbjct: 43  ARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100

Query: 75  RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
                  R   ++ +   L L        N LSGGE +RV LA
Sbjct: 101 ------TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 41  LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK- 99
           +       VP+       LTV+E++ + A  + D+        R ++ +      LK + 
Sbjct: 78  INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERL 133

Query: 100 NSVLNVLSGGERKRVALA 117
             +   LSGGE++ +A+ 
Sbjct: 134 KQLGGTLSGGEQQMLAIG 151

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 31  LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV---HEHMTLMARLKMDRNLHHV------- 80
           ++ GLE   +  + +      +D       V    +   L   L +  N+          
Sbjct: 45  MIAGLETITSGDLFIGE-KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 103

Query: 81  --ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
                + V+ + + L L    +     LSGG+R+RVA+ 
Sbjct: 104 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 142

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 27  DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
           +G I  +G         +V  F  Q    +   T+ E++         R    V+  +  
Sbjct: 90  EGIIKHSG---------RV-SFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQ 138

Query: 87  DALLK-ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
             + K               LSGG+R R++LA  V +D    +
Sbjct: 139 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 27  DGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
            GQIL++G  ++      +    G V Q ++     TV E++ L      D  +    + 
Sbjct: 72  SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTATDEEVVEAAKM 130

Query: 84  RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALA 117
                 +  L  G           LSGG+++R+++A
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 47  GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
            FV Q+      + V +++           +  ++  + V    ++L +    +     L
Sbjct: 75  AFVYQNYSLFPHMNVKKNLE------FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128

Query: 107 SGGERKRVAL 116
           SGGE++RVAL
Sbjct: 129 SGGEQQRVAL 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.97
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.93
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.9
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.87
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.82
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.42
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.65
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	94.9
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.44

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.2e-34  Score=216.38  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=105.1

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|+++|++++.. ..++.+||+||++.+|+.+||.||+.+....+   +.+.....+++.
T Consensus        46 STLl~~i~Gl~~----p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~  118 (239)
T d1v43a3          46 TTTLRMIAGLEE----PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVR  118 (239)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCC----CCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            367888888887    5899999999998753 34567999999999999999999998765443   356677788999


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      ++++.+++++..++++.+|||||||||+|||||+.+|+++|  |||||+|+||.++..
T Consensus       119 ~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl--lDEPts~LD~~~~~~  174 (239)
T d1v43a3         119 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL--MDEPLSNLDAKLRVA  174 (239)
T ss_dssp             HHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHHHH
T ss_pred             HHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCcee--ecCCcccCCHHHHHH
Confidence            99999999999999999999999999999999999999988  999999999885544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.5e-33  Score=212.09  Aligned_cols=127  Identities=20%  Similarity=0.183  Sum_probs=110.3

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      |++|+|+|++.    |++|+|+++|.++...       ..++.+||+||++.+++.+|+.||+.++...+   +.+..+.
T Consensus        44 Tll~~i~gl~~----p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~  116 (240)
T d1g2912          44 TTLRMIAGLEE----PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEI  116 (240)
T ss_dssp             HHHHHHHTSSC----CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHH
T ss_pred             HHHHHHhcCCC----CCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHH
Confidence            67788888877    5899999999987532       12567999999999999999999999887654   3456677


Q ss_pred             HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      .+++.++++.+++.+..++++++|||||||||+|||||+.+|+++|  +||||+|+||.++..
T Consensus       117 ~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl--lDEPt~~LD~~~~~~  177 (240)
T d1g2912         117 DQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL--MDEPLSNLDAKLRVR  177 (240)
T ss_dssp             HHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE--EECTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCCcccCHHHHHH
Confidence            7889999999999999999999999999999999999999999988  999999999885543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.9e-33  Score=211.46  Aligned_cols=126  Identities=21%  Similarity=0.162  Sum_probs=108.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      |++++|+|++.    |++|+|+++|+++...      ..++.+|||||++.+|+.+||.||+.++...+   +.+..+.+
T Consensus        46 Tll~~i~gl~~----p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~  118 (242)
T d1oxxk2          46 TFMRIIAGLDV----PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIR  118 (242)
T ss_dssp             HHHHHHHTSSC----CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHH
T ss_pred             HHHHHHHcCcC----CCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHH
Confidence            56677777766    5999999999998531      23567999999999999999999998875432   35667788


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.++++.++|.+..++++++|||||||||+|||||+.+|+++|  +||||+|+||.++.
T Consensus       119 ~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~lll--lDEPt~~LD~~~~~  177 (242)
T d1oxxk2         119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL--LDEPFSNLDARMRD  177 (242)
T ss_dssp             HHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCGGGHH
T ss_pred             HHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccccee--ecCCccCCCHHHHH
Confidence            899999999999999999999999999999999999999999988  99999999988544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-33  Score=212.92  Aligned_cols=127  Identities=24%  Similarity=0.271  Sum_probs=109.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA   83 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~   83 (156)
                      |++++|+|+..    |++|+|.++|+++...      ..|+.+|||||++.+++.+|+.||+.++...+   +.+.....
T Consensus        46 TLl~~i~Gl~~----p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~  118 (240)
T d3dhwc1          46 TLIRCVNLLER----PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVK  118 (240)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHH
T ss_pred             HHHHHHcCCcc----ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHH
Confidence            67788888776    5999999999998542      23467999999999999999999999877554   23455667


Q ss_pred             HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      +++.++++.++|.+..++++++|||||||||+|||||+.+|+++|  +||||+|+||.++..
T Consensus       119 ~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLl--lDEPt~~LD~~~~~~  178 (240)
T d3dhwc1         119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL--CDEATSALDPATTRS  178 (240)
T ss_dssp             HHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEE--EESGGGSSCHHHHHH
T ss_pred             HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEE--eccccccCCHHHhhH
Confidence            889999999999999999999999999999999999999999988  999999999885543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.1e-33  Score=212.45  Aligned_cols=124  Identities=27%  Similarity=0.303  Sum_probs=107.9

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD   87 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~   87 (156)
                      .|++|+|+|++.    |++|+|+++|.++++. ..++.+||+||++.+|+.+||.||+.|+..     .......++++.
T Consensus        38 STll~~i~Gl~~----p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~  108 (240)
T d2onka1          38 SVFLELIAGIVK----PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVR  108 (240)
T ss_dssp             HHHHHHHHTSSC----CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCC----CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHH
Confidence            377888888887    5899999999999754 345679999999999999999999987532     234555667899


Q ss_pred             HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ++++.+++.+..++++.+|||||||||+|||||+++|++++  |||||+|+||.++
T Consensus       109 ~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill--lDEPts~LD~~~~  162 (240)
T d2onka1         109 EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL--LDEPLSAVDLKTK  162 (240)
T ss_dssp             HHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE--EESTTSSCCHHHH
T ss_pred             HHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceE--ecCccccCCHHHH
Confidence            99999999999999999999999999999999999999998  9999999998743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.3e-33  Score=207.91  Aligned_cols=129  Identities=21%  Similarity=0.224  Sum_probs=108.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER   82 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~   82 (156)
                      |++++|+|++.    |++|+|+++|.+++...       .++.+|||||++.+++.+||.||+.++...+.....+....
T Consensus        46 TLl~~i~gl~~----p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~  121 (230)
T d1l2ta_          46 TMLNIIGCLDK----PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER  121 (230)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHH
T ss_pred             hhhHhccCCCC----CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHH
Confidence            67888888877    58999999999986431       13569999999999999999999998876543334456667


Q ss_pred             HHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         83 ARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        83 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+++|  +||||+||||.++.
T Consensus       122 ~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLl--lDEPTs~LD~~~~~  182 (230)
T d1l2ta_         122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL--ADQPTGALDSKTGE  182 (230)
T ss_dssp             HHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHHH
T ss_pred             HHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEE--ecCCccccCHHHHH
Confidence            778999999999976 5799999999999999999999999999988  99999999987443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.7e-34  Score=213.84  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=72.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      |++|+|+|++.    |++|+|+++|+++... ..++.+|||||++.+++.+|++||+.++...+   +......++++.+
T Consensus        41 TLl~~i~Gl~~----p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~  113 (232)
T d2awna2          41 TLLRMIAGLET----ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQ  113 (232)
T ss_dssp             HHHHHHHTSSC----CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------------------CHHHHHHHH
T ss_pred             HHHHHHhcCCC----CCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            67888888877    5899999999998654 34567999999999999999999999876543   2334456678999


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+|||||||||+|||||+.+|+++|  +||||+|+||.++.
T Consensus       114 ~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill--lDEPts~LD~~~~~  167 (232)
T d2awna2         114 VAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL--LDEPLSNLDAALRV  167 (232)
T ss_dssp             HHHHC---------------------CHHHHHHTCCSEEE--EESTTTTSCHHHHH
T ss_pred             HHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999988  99999999988543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=3.8e-33  Score=208.39  Aligned_cols=123  Identities=23%  Similarity=0.228  Sum_probs=106.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      |++++|+|++.    |++|+|+++|++++.. ..++.+||+||++.+|+++||.||+.++...+.   ..   ..+++.+
T Consensus        41 Tll~~l~Gl~~----p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~---~~~~~~~  110 (229)
T d3d31a2          41 LFLELIAGFHV----PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IK---DPKRVLD  110 (229)
T ss_dssp             HHHHHHHTSSC----CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CC---CHHHHHH
T ss_pred             HHHHHHhcCcC----CCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhcc---cc---HHHHHHH
Confidence            67778888777    5899999999999754 345679999999999999999999998876542   11   2357889


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      +++.+++.+..++++.+|||||||||+|||||+++|+++|  +||||+|+||.++.
T Consensus       111 ~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLl--lDEPts~LD~~~~~  164 (229)
T d3d31a2         111 TARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL--LDEPLSALDPRTQE  164 (229)
T ss_dssp             HHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE--EESSSTTSCHHHHH
T ss_pred             HHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCcee--ecCCCcCCCHHHHH
Confidence            9999999999999999999999999999999999999998  99999999987543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=1.4e-30  Score=197.89  Aligned_cols=128  Identities=18%  Similarity=0.143  Sum_probs=106.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc----------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM   73 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~   73 (156)
                      |++++|+|++.    |++|+|+++|++++..                ..++.+|||||++.+++.+|+.+|+.++.... 
T Consensus        43 TLl~~i~Gl~~----p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~-  117 (258)
T d1b0ua_          43 TFLRCINFLEK----PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-  117 (258)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-
T ss_pred             HHHHHHHcCcc----CCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh-
Confidence            67788888877    5899999999998521                23466999999999999999999998764322 


Q ss_pred             ccCCcHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         74 DRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        74 ~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                       .........+++.++++.+++.+. .++++.+|||||||||+|||||+.+|+++|  +||||+|+||.++..
T Consensus       118 -~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~lli--lDEPT~gLD~~~~~~  187 (258)
T d1b0ua_         118 -LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL--FDEPTSALDPELVGE  187 (258)
T ss_dssp             -TCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTSCHHHHHH
T ss_pred             -cCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEE--eccccccCCHHHHHH
Confidence             234566677889999999999874 578899999999999999999999999888  999999999886543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.7e-30  Score=195.37  Aligned_cols=128  Identities=13%  Similarity=0.137  Sum_probs=110.8

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      .|++|+|+|++.|    ++|+|.++|.++...  ..++.+||+||+..+++++|+.||+.+...++   ........+.+
T Consensus        42 STLl~~l~G~~~p----~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~  114 (238)
T d1vpla_          42 TTTLRIISTLIKP----SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMV  114 (238)
T ss_dssp             HHHHHHHTTSSCC----SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHH
T ss_pred             HHHHHHHhcCCCC----CCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHH
Confidence            3788999999885    899999999998643  34577999999999999999999998876654   23455566788


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      +++++.+++.+..++++++||||||||++||+||+++|+++|  |||||+|+||.++..
T Consensus       115 ~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ill--LDEPt~gLD~~~~~~  171 (238)
T d1vpla_         115 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI--LDEPTSGLDVLNARE  171 (238)
T ss_dssp             HHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHHHH
T ss_pred             HHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCCCCCCHHHHHH
Confidence            899999999999999999999999999999999999999998  999999999885543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=7.9e-30  Score=193.50  Aligned_cols=131  Identities=16%  Similarity=0.071  Sum_probs=105.7

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhh----------cc
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLK----------MD   74 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~----------~~   74 (156)
                      .|++|+|+|++.    |++|+|+++|++++...    .+..++|+||++.+++.+|+.||+.++...+          ..
T Consensus        44 STLl~~i~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~  119 (254)
T d1g6ha_          44 STLINVITGFLK----ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK  119 (254)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCS
T ss_pred             HHHHHHHHCCCc----CCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhc
Confidence            368888888877    48999999999986532    2344899999999999999999997643211          01


Q ss_pred             cCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753         75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      +........+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|  |||||+|+||.++..
T Consensus       120 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lli--lDEPt~gLD~~~~~~  188 (254)
T d1g6ha_         120 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV--MDEPIAGVAPGLAHD  188 (254)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTCCHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchh--hcCCcccCCHHHHHH
Confidence            111233455678899999999999999999999999999999999999999888  999999999875443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=7.5e-30  Score=192.13  Aligned_cols=126  Identities=19%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR   84 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~   84 (156)
                      .|++|+|+|++.|    ++|+|+++|+++....    .+..++|+||+..+|+.+|+.||+.+....+.    ......+
T Consensus        46 STl~~~i~Gl~~p----~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~  117 (240)
T d1ji0a_          46 TTTLSAIAGLVRA----QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKR  117 (240)
T ss_dssp             HHHHHHHTTSSCC----SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHH
T ss_pred             HHHHHHHhCCCCC----CccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHH
Confidence            3788899998874    8999999999987532    13348899999999999999999876543221    2223445


Q ss_pred             HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++++++.+ ++.+..++++.+|||||||||+|||||+++|+++|  |||||+|+||.++.
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLl--lDEPt~gLD~~~~~  176 (240)
T d1ji0a_         118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM--MDEPSLGLAPILVS  176 (240)
T ss_dssp             HHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE--EECTTTTCCHHHHH
T ss_pred             HHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEee--ecCCCcCCCHHHHH
Confidence            566777776 67888899999999999999999999999999888  99999999987443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=7.1e-27  Score=171.43  Aligned_cols=122  Identities=19%  Similarity=0.220  Sum_probs=99.5

Q ss_pred             HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753          9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA   88 (156)
Q Consensus         9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~   88 (156)
                      .|++++|+|++.    |++|+|.++|+++..  .+..++|+||+..++..+|+.+++.+....+... ..    ...+.+
T Consensus        41 STLl~~i~gl~~----p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~----~~~~~~  109 (200)
T d1sgwa_          41 TTLLKTISTYLK----PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VN----KNEIMD  109 (200)
T ss_dssp             HHHHHHHTTSSC----CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC----HHHHHH
T ss_pred             HHHHHHHhcccc----cCCCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cC----HHHHHH
Confidence            367888888887    489999999999864  3567899999998888999999998776554221 11    234667


Q ss_pred             HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .++.+++.+ .++++.+||||||||++||+|++.+|+++|  |||||+|+|+.++.
T Consensus       110 ~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~lll--lDEPt~gLD~~~~~  162 (200)
T d1sgwa_         110 ALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYV--LDDPVVAIDEDSKH  162 (200)
T ss_dssp             HHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEE--EESTTTTSCTTTHH
T ss_pred             HHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEE--EcCcccccCHHHHH
Confidence            788888754 457789999999999999999999999998  99999999988653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=180.03  Aligned_cols=127  Identities=19%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERART   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~   85 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.++|+||++.+|+ .|+++|+.++....... ..........
T Consensus        55 TLl~li~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~  129 (251)
T d1jj7a_          55 TVAALLQNLYQ----PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSG  129 (251)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHT
T ss_pred             HHHHHHhcccC----CCcCEEEECCEecchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHH
Confidence            56666666666    5899999999998643   45678999999998875 59999998653211000 0000011112


Q ss_pred             HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      ..+.++.+  ++....++...+||||||||++|||||+.+|+++|  |||||+++|+.+.
T Consensus       130 ~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ili--lDEpTs~LD~~~~  187 (251)
T d1jj7a_         130 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLI--LDDATSALDANSQ  187 (251)
T ss_dssp             CHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHH
T ss_pred             HHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEE--ecCcCcccChhhH
Confidence            23445544  44455667778999999999999999999999888  9999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.7e-27  Score=177.29  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++...   .+++.++||||++.+|+ .|+++|+.++...     ...    +.+
T Consensus        44 TLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~-----~~~----~~~  109 (241)
T d2pmka1          44 TLTKLIQRFYI----PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPG-----MSV----EKV  109 (241)
T ss_dssp             HHHHHHTTSSC----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTT-----CCH----HHH
T ss_pred             HHHHHHHhcCC----CCCCEEEECCEEecccchhhhhceEEEEecccccCC-ccccccccccCcc-----ccH----HHH
Confidence            56666677666    5899999999998643   45778999999998875 5999999764321     111    112


Q ss_pred             HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      .+.++..++           ....+....+||||||||++|||||+.+|+++|  |||||+++|+.+..
T Consensus       110 ~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ili--lDEpts~LD~~~~~  176 (241)
T d2pmka1         110 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI--FDEATSALDYESEH  176 (241)
T ss_dssp             HHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE--ECCCCSCCCHHHHH
T ss_pred             HHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhh--hhCCccccCHHHHH
Confidence            222222222           223445568999999999999999999999888  99999999987543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.93  E-value=3.8e-27  Score=177.39  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|++.    |++|+|.++|.++..   ..+++.+|||||++.+|+. |++||+.+....    ....    +.+
T Consensus        43 TLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~----~~~  109 (242)
T d1mv5a_          43 TIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTD----EDL  109 (242)
T ss_dssp             HHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCH----HHH
T ss_pred             HHHHHHHHhhC----CCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhhheeccccc----ccch----hhH
Confidence            56777777766    589999999999864   3457889999999998876 999998654221    1111    122


Q ss_pred             HHHHHHcCCC-------cc----ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         87 DALLKELGLL-------KC----KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        87 ~~~l~~~~L~-------~~----~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                      .+.++..++.       ..    ......+||||||||++|||||+.+|+++|  |||||+|+|+.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ili--lDEpts~LD~~~~  175 (242)
T d1mv5a_         110 WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM--LDEATASLDSESE  175 (242)
T ss_dssp             HHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCSCSSCSSSC
T ss_pred             HHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE--ecCCccccCHHHH
Confidence            2333333332       12    223346799999999999999999999888  9999999998743

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.92  E-value=1.6e-26  Score=175.01  Aligned_cols=121  Identities=20%  Similarity=0.162  Sum_probs=87.8

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      ||+++|+.++...+.|++|+|.++|.++...   .+++.++||+|++.+|+ .|++||+.++...     ...    +++
T Consensus        55 sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~-----~~~----~~~  124 (255)
T d2hyda1          55 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT-----ATD----EEV  124 (255)
T ss_dssp             SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS-----CCH----HHH
T ss_pred             CcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccCcC-----CCH----HHH
Confidence            3444444444444446999999999998643   46788999999998875 5999999765211     111    234


Q ss_pred             HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753         87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS  142 (156)
Q Consensus        87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~  142 (156)
                      .++++..++.+           .......+||||||||++|||||+.+|+++|  |||||+++|+.+
T Consensus       125 ~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ili--lDEpts~LD~~t  189 (255)
T d2hyda1         125 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI--LDEATSALDLES  189 (255)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE--EESTTTTCCHHH
T ss_pred             HHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHH
Confidence            45555555432           2233456799999999999999999999888  999999999774

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=4.6e-26  Score=172.45  Aligned_cols=123  Identities=18%  Similarity=0.209  Sum_probs=88.5

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-   85 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-   85 (156)
                      |++++|+|++.    |++|+|+++|.++...   .+++.++|+||++.+|. .|+.+|+.++...    ........+. 
T Consensus        56 TLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~~----~~~~~~i~~a~  126 (253)
T d3b60a1          56 TIASLITRFYD----IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTE----EYSREQIEEAA  126 (253)
T ss_dssp             HHHHHHTTTTC----CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTS----CCCHHHHHHHH
T ss_pred             HHHHHHhcccC----CCccEEEECCcccchhhhhhhhheEEEEeeccccCC-cchhhhhhhcCcc----cCCHHHHHHHH
Confidence            56667777666    5899999999998653   45778999999998875 4899998764211    1122111111 


Q ss_pred             ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753         86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA  143 (156)
Q Consensus        86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~  143 (156)
                          +.+.++.+  |++...+..+.+|||||||||+|||||+.+|+++|  |||||+++|+.+.
T Consensus       127 ~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ili--lDEpts~LD~~~~  188 (253)
T d3b60a1         127 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI--LDEATSALDTESE  188 (253)
T ss_dssp             HTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE--EETTTSSCCHHHH
T ss_pred             HHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEE--eccccccCCHHHH
Confidence                12233333  34444556678899999999999999999999888  9999999998643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.3e-24  Score=161.12  Aligned_cols=121  Identities=20%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV   86 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |++++|+|+.     |++|+|.++|+++...   ..+...+|++|........++++++.+....        ....+.+
T Consensus        40 TLl~~l~Gl~-----~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~  106 (231)
T d1l7vc_          40 TLLARMAGMT-----SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELL  106 (231)
T ss_dssp             HHHHHHHTSC-----CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHH
T ss_pred             HHHHHHhCCC-----CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHH
Confidence            6788999964     3689999999988643   2344578999987766667888877653211        1224567


Q ss_pred             HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc-------CCCeeEEecCCCCCCCCchhhhe
Q psy16753         87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ-------DCSRVVKITDSQPRGKWPISALF  145 (156)
Q Consensus        87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~-------~p~ill~~~Dep~~g~~~~~~~~  145 (156)
                      .++++.+++.+..++++.+||||||||++||+|+++       +|+++|  |||||+|+||.++..
T Consensus       107 ~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll--lDEPt~gLD~~~~~~  170 (231)
T d1l7vc_         107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL--LDEPMNSLDVAQQSA  170 (231)
T ss_dssp             HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE--ESSCSTTCCHHHHHH
T ss_pred             HHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEE--EcCCCCCCCHHHHHH
Confidence            889999999999999999999999999999999997       678887  999999999875543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.7e-23  Score=159.25  Aligned_cols=108  Identities=20%  Similarity=0.185  Sum_probs=79.0

Q ss_pred             HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753         10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL   89 (156)
Q Consensus        10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (156)
                      |++++|+|++.    |++|+|.++|          +++|+||++.+++. |+++|+.++...      ..    .....+
T Consensus        77 TLl~~i~Gl~~----p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~eni~~~~~~------~~----~~~~~~  131 (281)
T d1r0wa_          77 SLLMLILGELE----ASEGIIKHSG----------RVSFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSV  131 (281)
T ss_dssp             HHHHHHHTSSC----CSEEEEECCS----------CEEEECSSCCCCSE-EHHHHHTTTSCC------CH----HHHHHH
T ss_pred             HHHHHHhCCCc----CCCcEEEECC----------EEEEEeccccccCc-eeeccccccccc------cc----hHHHHH
Confidence            67777777776    5899999988          37999999988775 999999764211      11    112222


Q ss_pred             HHHc-------CCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753         90 LKEL-------GLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL  144 (156)
Q Consensus        90 l~~~-------~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~  144 (156)
                      ++..       .+.+    ..++...+|||||||||+|||||+.+|+++|  |||||+|+|+.+..
T Consensus       132 ~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ill--LDEPts~LD~~~~~  195 (281)
T d1r0wa_         132 VKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVFTEE  195 (281)
T ss_dssp             HHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEE--EESCCCSSCHHHHH
T ss_pred             HHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchh--hcCccccCCHHHHH
Confidence            2222       2222    2344556799999999999999999999888  99999999987543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=2.1e-05  Score=60.38  Aligned_cols=38  Identities=29%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             ccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCch
Q psy16753        102 VLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPI  141 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~  141 (156)
                      .+..+|||||..+++|..+    ..++++++  +|||++++|+.
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pili--lDE~d~~Ld~~  370 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFV--LDEVDAALDIT  370 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEE--ESSTTTTCCHH
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEE--EeCCCCCCCHH
Confidence            4467899999998877533    34455555  99999999964

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.0023  Score=46.77  Aligned_cols=49  Identities=24%  Similarity=0.266  Sum_probs=36.8

Q ss_pred             ccCcCChHHHHHHHHHHH----HhcCCCeeEEecCCCCCCCCch---------------hhheeeccccc
Q psy16753        102 VLNVLSGGERKRVALAVQ----VSQDCSRVVKITDSQPRGKWPI---------------SALFITTASSV  152 (156)
Q Consensus       102 ~~~~LSgGerqrv~LA~A----L~~~p~ill~~~Dep~~g~~~~---------------~~~~~~~~~~~  152 (156)
                      .+..+|+|+|+...++..    ...++.+++  +|||-++++|.               .|+.|||||..
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~--iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~  283 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYV--LDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI  283 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEE--EESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhh--hhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence            456899999999887764    334445554  89999999876               46678888854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.90  E-value=0.0063  Score=40.56  Aligned_cols=31  Identities=6%  Similarity=-0.175  Sum_probs=27.6

Q ss_pred             cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCC
Q psy16753        105 VLSGGERKRVALAVQVSQDCSRVVKITDSQPRG  137 (156)
Q Consensus       105 ~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g  137 (156)
                      ++|+|++++.++++++..+|++++  +|||...
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vll--lDE~~~~  111 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVII--IDEIGKM  111 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEE--ECCCSTT
T ss_pred             hhhhhhhHHHHHHHHHhcCCCcee--ecCCCcc
Confidence            478999999999999999999888  9997443