Psyllid ID: psy1675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFSKIK
Secondary Structure (PSIPRED)
ccEEcccccHHHHHHccccccccEEEEEccccccccccccccccHHHHHHHHHHccccccccccEEEEcccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHHcccHHHEEEEEEEccccccccccccHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHcccccHHEEEEEHHccc
Coil and Loop (DISEMBL)
MGIPVGKLSLYTALagikphqclpitldvgtntqgfskpsmgipvgkLSLYTALagikphqclpitldvgtntqqllddplyiglrqrrttgqAYDDFIEEFMQAVVARYGQHVLIQTLSDLvteadldsgclypppniikdCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFSKIK
Flexible Loop (DISEMBL)
MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAfkdgtatkvgtatlfrlikfskik
Low Complexity Region (SEG)
MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFSKIK
Disordered region (IsUnstruct)
****VGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKF****
Disordered Region (DISOPRED)
MGIPV*KLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFS***
Disordered Region (DISEMBL)
MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFSKIK
Disordered Region (DISPRO)
MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFSK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIKFSKIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
P40927	557	NADP-dependent malic enzy	N/A	N/A	0.430	0.138	0.688	2e-27
P28227	557	NADP-dependent malic enzy	N/A	N/A	0.413	0.132	0.675	3e-27
P12628	589	NADP-dependent malic enzy	N/A	N/A	0.430	0.130	0.662	2e-26
P43279	639	NADP-dependent malic enzy	yes	N/A	0.430	0.120	0.688	3e-26
Q9LYG3	588	NADP-dependent malic enzy	yes	N/A	0.620	0.188	0.508	5e-26
P48163	572	NADP-dependent malic enzy	yes	N/A	0.430	0.134	0.649	7e-26
Q29558	557	NADP-dependent malic enzy	yes	N/A	0.430	0.138	0.649	8e-26
P34105	591	NADP-dependent malic enzy	no	N/A	0.620	0.187	0.5	1e-25
P37223	585	NADP-dependent malic enzy	N/A	N/A	0.430	0.131	0.649	2e-25
Q9CA83	646	NADP-dependent malic enzy	no	N/A	0.620	0.171	0.482	3e-25

>sp|P40927|MAOX_COLLI NADP-dependent malic enzyme OS=Columba livia GN=ME1 PE=1 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 64/77 (83%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++
Sbjct: 156 MGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLD 215

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV +RYG + LIQ
Sbjct: 216 EFMEAVTSRYGMNCLIQ 232

Columba livia (taxid: 8932)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0

>sp|P28227|MAOX_ANAPL NADP-dependent malic enzyme OS=Anas platyrhynchos GN=ME1 PE=1 SV=1

 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+KPH+CLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++
Sbjct: 156 MGIPVGKLALYTACGGVKPHECLPVMLDVGTDNEALLKDPLYIGLRHKRIRGQAYDDLLD 215

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV +RYG + LIQ
Sbjct: 216 EFMEAVTSRYGMNCLIQ 232

Anas platyrhynchos (taxid: 8839)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/77 (66%), Positives = 63/77 (81%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLYTAL G++P  CLP+T+DVGTN ++LL+D  YIGLRQRR TGQ Y  F++
Sbjct: 202 MGIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYATFLD 261

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV   YG+ VL+Q
Sbjct: 262 EFMRAVKQNYGEKVLVQ 278

Phaseolus vulgaris (taxid: 3885)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P43279|MAOC_ORYSJ NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/77 (68%), Positives = 62/77 (80%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLYTAL G++P  CLPIT+DVGTN +QLL+D  YIGLRQRR TG+ Y + +E
Sbjct: 252 MGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEQLLNDEFYIGLRQRRATGKEYHELME 311

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM AV   YG+ VLIQ
Sbjct: 312 EFMSAVKQIYGEKVLIQ 328

The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q9LYG3|MAOP2_ARATH NADP-dependent malic enzyme 2 OS=Arabidopsis thaliana GN=NADP-ME2 PE=1 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 1/112 (0%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLYTAL GI+P  CLPIT+DVGTN ++LL+D  YIGL+QRR TGQ Y +F+ 
Sbjct: 201 MGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNDEFYIGLKQRRATGQEYAEFLH 260

Query: 101 EFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLV 152
           EFM AV   YG+ VL+Q   D       D    Y   +++ +  ++  A +V
Sbjct: 261 EFMCAVKQNYGEKVLVQ-FEDFANHNAFDLLSKYSDSHLVFNDDIQGTASVV 311

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P48163|MAOX_HUMAN NADP-dependent malic enzyme OS=Homo sapiens GN=ME1 PE=1 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 62/77 (80%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQRR  G  YDDF++
Sbjct: 167 MGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLD 226

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV ++YG + LIQ
Sbjct: 227 EFMEAVSSKYGMNCLIQ 243

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q29558|MAOX_PIG NADP-dependent malic enzyme (Fragment) OS=Sus scrofa GN=ME1 PE=2 SV=1

 Score =  116 bits (290), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 62/77 (80%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQRR  G  YDDF++
Sbjct: 153 MGIPVGKLALYTACGGVNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGPEYDDFLD 212

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV ++YG + LIQ
Sbjct: 213 EFMEAVSSKYGMNCLIQ 229

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P34105|MAOX_POPTR NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           +GIPVGKLSLYTAL G++P  CLP+T+DVGTN +QLL D  YIGLRQRR TGQ Y + + 
Sbjct: 204 IGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEQLLKDEFYIGLRQRRATGQEYSELLH 263

Query: 101 EFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLV 152
           EFM AV   YG+ VLIQ   D       D    Y   +++ +  ++  A +V
Sbjct: 264 EFMTAVKQNYGEKVLIQ-FEDFANHNAFDLLAKYGTTHLVFNDDIQGTAAVV 314

Populus trichocarpa (taxid: 3694)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P37223|MAOX_MESCR NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 62/77 (80%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLY+AL G+ P  CLPITLDVGTN Q+LLDD  YIGL+Q+R TG+ Y +F++
Sbjct: 198 MGIPVGKLSLYSALGGVCPSACLPITLDVGTNNQKLLDDEFYIGLKQKRATGEEYAEFVQ 257

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM AV   YG+ +L+Q
Sbjct: 258 EFMSAVKQNYGEKILVQ 274

Plays a role in CAM (crassulacean acid metabolism) photosynthesis.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q9CA83|MAOP4_ARATH NADP-dependent malic enzyme 4, chloroplastic OS=Arabidopsis thaliana GN=NADP-ME4 PE=1 SV=1

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLYTAL G++P  CLP+T+DVGTN ++LL+D  YIGLRQRR TG+ Y + + 
Sbjct: 259 MGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQRRATGEEYSELMH 318

Query: 101 EFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLV 152
           EFM AV   YG+ V+IQ   D       D    Y   +++ +  ++  A +V
Sbjct: 319 EFMTAVKQNYGEKVVIQ-FEDFANHNAFDLLAKYGTTHLVFNDDIQGTASVV 369

The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
443419066	623	NADP-dependent malic enzyme-like protein	0.430	0.123	0.857	8e-33
194743202	814	GF18099 [Drosophila ananassae] gi|190627	0.463	0.101	0.744	1e-31
380024737	631	PREDICTED: LOW QUALITY PROTEIN: NADP-dep	0.430	0.122	0.805	4e-31
157111212	660	malic enzyme [Aedes aegypti] gi|10887849	0.463	0.125	0.711	4e-31
350405161	606	PREDICTED: NADP-dependent malic enzyme-l	0.430	0.127	0.818	4e-31
91093507	608	PREDICTED: similar to malate dehydrogena	0.430	0.126	0.805	4e-31
195037521	815	GH19210 [Drosophila grimshawi] gi|193894	0.430	0.094	0.805	5e-31
242011898	1184	NADP-dependent malic enzyme, putative [P	0.413	0.062	0.831	6e-31
321468728	557	hypothetical protein DAPPUDRAFT_304467 [	0.430	0.138	0.831	6e-31
328778238	637	PREDICTED: NADP-dependent malic enzyme i	0.430	0.120	0.792	7e-31

>gi|443419066|gb|AGC84405.1| NADP-dependent malic enzyme-like protein [Locusta migratoria]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 72/77 (93%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTALAGIKPHQCLPITLDVGTNTQ+LLDDPLYIGLR +R TG+ YDDF+E
Sbjct: 227 MGIPVGKLALYTALAGIKPHQCLPITLDVGTNTQKLLDDPLYIGLRHKRITGKEYDDFVE 286

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFMQAVV RYGQ+ LIQ
Sbjct: 287 EFMQAVVKRYGQNTLIQ 303

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743202|ref|XP_001954089.1| GF18099 [Drosophila ananassae] gi|190627126|gb|EDV42650.1| GF18099 [Drosophila ananassae]

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/90 (74%), Positives = 75/90 (83%), Gaps = 7/90 (7%)

Query: 28  DVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 87
           D+G N        MGIPVGKLSLYTALAGIKP QCLPITLDVGTNT+ LLDDPLYIGL++
Sbjct: 415 DLGAN-------GMGIPVGKLSLYTALAGIKPSQCLPITLDVGTNTESLLDDPLYIGLKE 467

Query: 88  RRTTGQAYDDFIEEFMQAVVARYGQHVLIQ 117
           RRTTG AYD+FI+EFM A V R+GQ+VLIQ
Sbjct: 468 RRTTGAAYDEFIDEFMHACVRRFGQNVLIQ 497

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024737|ref|XP_003696148.1| PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme-like [Apis florea]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 70/77 (90%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG R +R TG+ YDDF++
Sbjct: 235 MGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIGHRHKRITGKEYDDFLD 294

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFMQA++ RYGQ+ LIQ
Sbjct: 295 EFMQAIIKRYGQNTLIQ 311

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111212|ref|XP_001651437.1| malic enzyme [Aedes aegypti] gi|108878492|gb|EAT42717.1| AAEL005790-PA [Aedes aegypti]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 75/90 (83%), Gaps = 7/90 (7%)

Query: 28  DVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 87
           D+G N        MGIPVGKL+LYTALAGIKPHQCLP+TLDVGTNTQ +LDDPLY+GLR 
Sbjct: 258 DLGAN-------GMGIPVGKLALYTALAGIKPHQCLPVTLDVGTNTQSILDDPLYVGLRH 310

Query: 88  RRTTGQAYDDFIEEFMQAVVARYGQHVLIQ 117
           +R TG+AYD+FIEEFMQA V R+G++ LIQ
Sbjct: 311 KRVTGEAYDEFIEEFMQAAVRRFGRNCLIQ 340

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405161|ref|XP_003487345.1| PREDICTED: NADP-dependent malic enzyme-like [Bombus impatiens]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 70/77 (90%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG R +R TG+ YD+F++
Sbjct: 210 MGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIGHRHKRVTGEEYDEFLD 269

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFMQAVV RYGQ+ LIQ
Sbjct: 270 EFMQAVVKRYGQNTLIQ 286

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093507|ref|XP_969226.1| PREDICTED: similar to malate dehydrogenase [Tribolium castaneum] gi|270002679|gb|EEZ99126.1| hypothetical protein TcasGA2_TC005233 [Tribolium castaneum]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIP+GKLSLYTALAGIKPHQCLPITLDVGTNT+++L+DPLYIGL+Q R  GQ YDDFIE
Sbjct: 214 MGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTEKMLNDPLYIGLKQNRVRGQQYDDFIE 273

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFMQ+VV R+GQ+ LIQ
Sbjct: 274 EFMQSVVRRWGQNTLIQ 290

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195037521|ref|XP_001990209.1| GH19210 [Drosophila grimshawi] gi|193894405|gb|EDV93271.1| GH19210 [Drosophila grimshawi]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQ +LDDPLY+GLRQ R+TG  YD+F++
Sbjct: 422 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQSILDDPLYMGLRQTRSTGDVYDEFVD 481

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+A V R+GQ+VLIQ
Sbjct: 482 EFMRACVRRFGQNVLIQ 498

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011898|ref|XP_002426680.1| NADP-dependent malic enzyme, putative [Pediculus humanus corporis] gi|212510851|gb|EEB13942.1| NADP-dependent malic enzyme, putative [Pediculus humanus corporis]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 69/77 (89%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKLSLYTALAGIKPHQCLPITLDVGTN  QLL+DPLY+GLRQRR TG  YD+FI+
Sbjct: 190 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNNSQLLEDPLYVGLRQRRVTGSRYDEFID 249

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFMQAVV RYG + LIQ
Sbjct: 250 EFMQAVVKRYGCNTLIQ 266

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468728|gb|EFX79712.1| hypothetical protein DAPPUDRAFT_304467 [Daphnia pulex]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 70/77 (90%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTALAGIKPHQCLPI LDVGTNTQ+LLDDPLYIGLRQ+R TG AYD+ I+
Sbjct: 156 MGIPVGKLALYTALAGIKPHQCLPIVLDVGTNTQELLDDPLYIGLRQKRVTGDAYDELID 215

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM AVV RYGQ+ LIQ
Sbjct: 216 EFMTAVVHRYGQNTLIQ 232

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778238|ref|XP_395280.4| PREDICTED: NADP-dependent malic enzyme isoform 1 [Apis mellifera]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG R +R TG+ YDDF++
Sbjct: 241 MGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIGHRHKRITGKEYDDFLD 300

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+A++ RYGQ+ LIQ
Sbjct: 301 EFMEAIIKRYGQNTLIQ 317

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
FB|FBgn0002719	763	Men "Malic enzyme" [Drosophila	0.430	0.100	0.779	3.7e-37
FB|FBgn0029155	624	Men-b "Malic enzyme b" [Drosop	0.430	0.123	0.753	1e-33
ZFIN|ZDB-GENE-041111-294	603	me3 "malic enzyme 3, NADP(+)-d	0.430	0.127	0.662	1.2e-32
UNIPROTKB|J9NZX7	497	ME1 "Malic enzyme" [Canis lupu	0.430	0.154	0.649	1.2e-32
RGD|3074	572	Me1 "malic enzyme 1, NADP(+)-d	0.430	0.134	0.649	1.9e-32
UNIPROTKB|P13697	572	Me1 "NADP-dependent malic enzy	0.430	0.134	0.649	1.9e-32
UNIPROTKB|E1C7M4	541	ME1 "Malic enzyme" [Gallus gal	0.430	0.142	0.649	4.2e-32
UNIPROTKB|F1P0Y6	576	ME1 "Malic enzyme" [Gallus gal	0.430	0.133	0.649	6.2e-32
MGI|MGI:97043	572	Me1 "malic enzyme 1, NADP(+)-d	0.430	0.134	0.649	1.7e-31
UNIPROTKB|F1STS4	545	ME3 "Malic enzyme" [Sus scrofa	0.430	0.141	0.649	2.9e-30

FB|FBgn0002719 Men "Malic enzyme" [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
 Identities = 60/77 (77%), Positives = 68/77 (88%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKLSLYTALAGIKP QCLPITLDVGTNT+ +L+DPLYIGLR+RR TG  YD+FI+
Sbjct:   370 MGIPVGKLSLYTALAGIKPSQCLPITLDVGTNTESILEDPLYIGLRERRATGDLYDEFID 429

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM A V R+GQ+ LIQ
Sbjct:   430 EFMHACVRRFGQNCLIQ 446

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=ISS;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0030431 "sleep" evidence=IMP

GO:0010941 "regulation of cell death" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

FB|FBgn0029155 Men-b "Malic enzyme b" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
 Identities = 58/77 (75%), Positives = 68/77 (88%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTALAGIKPHQCLPI +DVGTN   LL+DPLY+GLRQ+R  G+ YD+FI+
Sbjct:   205 MGIPVGKLALYTALAGIKPHQCLPIVVDVGTNNIDLLEDPLYVGLRQKRVVGREYDEFID 264

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+AVV RYGQ+ LIQ
Sbjct:   265 EFMEAVVQRYGQNTLIQ 281

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006108 "malate metabolic process" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

ZFIN|ZDB-GENE-041111-294 me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 51/77 (66%), Positives = 61/77 (79%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+ P QCLP+ LDVGT+ Q LLDDPLYIGL+ +R  G+ YDD I+
Sbjct:   201 MGIPVGKLALYTACGGVPPQQCLPVLLDVGTDNQTLLDDPLYIGLKHKRVRGKEYDDLID 260

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFMQAV  +YG + LIQ
Sbjct:   261 EFMQAVTDKYGMNCLIQ 277

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004470 "malic enzyme activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|J9NZX7 ME1 "Malic enzyme" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 50/77 (64%), Positives = 61/77 (79%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+ P +CLP+ LDVGT  + LL DPLYIGLRQRR  G  YDDF++
Sbjct:    92 MGIPVGKLALYTACGGMNPQECLPVILDVGTENEALLKDPLYIGLRQRRVRGPEYDDFLD 151

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+AV ++YG + LIQ
Sbjct:   152 EFMEAVSSKYGMNCLIQ 168

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+ P QCLPITLDVGT  ++LL DPLYIGLR RR  G  YD F++
Sbjct:   167 MGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLD 226

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+A  ++YG + LIQ
Sbjct:   227 EFMEAASSKYGMNCLIQ 243

GO:0004470 "malic enzyme activity" evidence=ISO;ISS;IDA

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006108 "malate metabolic process" evidence=IEA;ISO;ISS

GO:0009725 "response to hormone stimulus" evidence=IDA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IDA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+ P QCLPITLDVGT  ++LL DPLYIGLR RR  G  YD F++
Sbjct:   167 MGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLD 226

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+A  ++YG + LIQ
Sbjct:   227 EFMEAASSKYGMNCLIQ 243

GO:0004470 "malic enzyme activity" evidence=ISS

GO:0006108 "malate metabolic process" evidence=ISS

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|E1C7M4 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
 Identities = 50/77 (64%), Positives = 63/77 (81%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+KP++CLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++
Sbjct:   140 MGIPVGKLALYTACGGVKPYECLPVMLDVGTDNEALLKDPLYIGLRHKRIRGQAYDDLLD 199

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+AV + YG + LIQ
Sbjct:   200 EFMEAVTSSYGMNCLIQ 216

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
 Identities = 50/77 (64%), Positives = 63/77 (81%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+KP++CLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++
Sbjct:   175 MGIPVGKLALYTACGGVKPYECLPVMLDVGTDNEALLKDPLYIGLRHKRIRGQAYDDLLD 234

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+AV + YG + LIQ
Sbjct:   235 EFMEAVTSSYGMNCLIQ 251

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)]

 Score = 273 (101.2 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+ P QCLPITLDVGT  ++LL DPLYIGLR RR  G  YD F++
Sbjct:   167 MGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLD 226

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFM+A  ++YG + LIQ
Sbjct:   227 EFMEAASSKYGMNCLIQ 243

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004470 "malic enzyme activity" evidence=ISO;ISS

GO:0004471 "malate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=ISO;ISS;IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISS

GO:0009725 "response to hormone stimulus" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0051262 "protein tetramerization" evidence=IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP

UNIPROTKB|F1STS4 ME3 "Malic enzyme" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 50/77 (64%), Positives = 61/77 (79%)

Query:    41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
             MGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ RR  GQ YDD ++
Sbjct:   143 MGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLD 202

Query:   101 EFMQAVVARYGQHVLIQ 117
             EFMQAV  ++G + LIQ
Sbjct:   203 EFMQAVTDKFGINCLIQ 219

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P06801	MAOX_MOUSE	1, ., 1, ., 1, ., 4, 0	0.6493	0.4301	0.1346	yes	N/A
P13697	MAOX_RAT	1, ., 1, ., 1, ., 4, 0	0.6493	0.4301	0.1346	yes	N/A
Q29558	MAOX_PIG	1, ., 1, ., 1, ., 4, 0	0.6493	0.4301	0.1382	yes	N/A
Q9LYG3	MAOP2_ARATH	1, ., 1, ., 1, ., 4, 0	0.5089	0.6201	0.1887	yes	N/A
P43279	MAOC_ORYSJ	1, ., 1, ., 1, ., 4, 0	0.6883	0.4301	0.1205	yes	N/A
Q4FRX3	MAO1_PSYA2	1, ., 1, ., 1, ., 3, 8	0.5443	0.4301	0.1375	yes	N/A
Q1QC40	MAO1_PSYCK	1, ., 1, ., 1, ., 3, 8	0.5443	0.4301	0.1375	yes	N/A
P48163	MAOX_HUMAN	1, ., 1, ., 1, ., 4, 0	0.6493	0.4301	0.1346	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	2e-45
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	1e-39
pfam00390	182	pfam00390, malic, Malic enzyme, N-terminal domain	3e-39
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	7e-29
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	1e-09
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	4e-08
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	7e-06
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	7e-06
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	1e-05
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	2e-05
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	0.002

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score =  156 bits (398), Expect = 2e-45
 Identities = 47/77 (61%), Positives = 60/77 (77%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL LYTA  GI+P   LP+ +DVGTN ++LL+DP YIGLRQ R TG+ YD+ ++
Sbjct: 194 MGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVD 253

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV  R+G  VL+Q
Sbjct: 254 EFMEAVKQRWGPKVLVQ 270

Length = 581

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score =  140 bits (356), Expect = 1e-39
 Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIP+GKLSLYTA  GI P + LP+ LDVGTN +QLL+DPLY+G R  R  G+ YD+F++
Sbjct: 169 MGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVD 228

Query: 101 EFMQAVVARYGQHVLIQ 117
           EF+QAV  R+  + L+Q
Sbjct: 229 EFVQAVKRRF-PNALLQ 244

Length = 563

>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain

 Score =  131 bits (332), Expect = 3e-39
 Identities = 43/78 (55%), Positives = 57/78 (73%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            M I  GKL+LYTA AGI P + LPI LDVGTN ++LL+DPLY+GLR +R  G+ YD+F+
Sbjct: 88  GMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTNNEKLLNDPLYLGLRHKRVRGEEYDEFV 147

Query: 100 EEFMQAVVARYGQHVLIQ 117
           +EF++AV A +     IQ
Sbjct: 148 DEFVEAVKALFPPFGGIQ 165

Length = 182

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score =  111 bits (279), Expect = 7e-29
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 8/90 (8%)

Query: 28  DVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 87
           D+G N        MGI +GKLSLY A  GI P + LP+ LDVGTN ++LL+DPLY+GLR+
Sbjct: 165 DLGAN-------GMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLRE 217

Query: 88  RRTTGQAYDDFIEEFMQAVVARYGQHVLIQ 117
           +R     Y + ++EFM+AV +R+  + ++Q
Sbjct: 218 KRLDDDEYYELLDEFMEAVSSRW-PNAVVQ 246

Length = 559

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + L+ LVT+ +L  G LYPP + I++ S +IA  + + A+++G AT
Sbjct: 215 EALASLVTDEELARGRLYPPLSNIREISAQIAVAVAKYAYEEGLAT 260

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 118 TLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGT 166
            L+  VTE +L  G +YPP + I+D S  +AA +  +A+++G AT++  
Sbjct: 512 ALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPR 560

Length = 581

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFRLIK 174
             L+D V  A    G L PP   I++ S  IA  + + A ++G A +     L + I+
Sbjct: 492 HALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARETSDEDLEQAIE 549

Length = 563

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 72
              +  GK  L+ A AGI     LPI LDVGTN
Sbjct: 99  GKPVMEGKAVLFKAFAGID---VLPIELDVGTN 128

Length = 432

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 112 QHVLI---QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
             +LI    +L+ LV+E DL  G LYPP   I++ S  IA  ++E+A + G A  
Sbjct: 483 DEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKN 537

Length = 559

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 1   MGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 32
             +  GK  L+ A AGI     LPI LDVGTN
Sbjct: 100 KPVMEGKAVLFKAFAGID---VLPIELDVGTN 128

Length = 432

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQA 155
           + L++LVTE +L  G + PP   I++ S ++A  + + A
Sbjct: 216 EALAELVTEEELGEGYIIPPLFDIREVSPRVAVAVAKAA 254

Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG1257|consensus	582		100.0
PTZ00317	559	NADP-dependent malic enzyme; Provisional	100.0
PLN03129	581	NADP-dependent malic enzyme; Provisional	100.0
PRK13529	563	malate dehydrogenase; Provisional	100.0
PF00390	182	malic: Malic enzyme, N-terminal domain; InterPro:	100.0
KOG1257|consensus	582		99.96
PLN03129	581	NADP-dependent malic enzyme; Provisional	99.9
PTZ00317	559	NADP-dependent malic enzyme; Provisional	99.83
PRK13529	563	malate dehydrogenase; Provisional	99.81
PF00390	182	malic: Malic enzyme, N-terminal domain; InterPro:	99.74
COG0281	432	SfcA Malic enzyme [Energy production and conversio	99.4
PRK12861	764	malic enzyme; Reviewed	99.16
PRK12862	763	malic enzyme; Reviewed	99.13
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	99.01
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	98.08
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.88
PRK12861	764	malic enzyme; Reviewed	97.35
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.03
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.7
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	94.98
PRK12862	763	malic enzyme; Reviewed	94.94
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.44

>KOG1257|consensus

Probab=100.00  E-value=4.1e-41  Score=307.65  Aligned_cols=153  Identities=44%  Similarity=0.737  Sum_probs=127.2

Q ss_pred             hhhhhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccc
Q psy1675           8 LSLYTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG   84 (179)
Q Consensus         8 l~l~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig   84 (179)
                      -+++.....|+-+++--|++..|.++.+   ||++|||||+|||+||||||||+|++||||+|||||||++||+||+|+|
T Consensus       147 Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiG  226 (582)
T KOG1257|consen  147 GHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIG  226 (582)
T ss_pred             chHHHHHHhCCccceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccc
Confidence            4556666777444456677778888887   7889999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccc-
Q psy1675          85 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIK-  141 (179)
Q Consensus        85 ~r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir-  141 (179)
                      +|++|.+|++|++|+||||+|+.++|||+++|||||                      |+|+|+++..+.++.+++..+ 
T Consensus       227 Lr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~  306 (582)
T KOG1257|consen  227 LRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGK  306 (582)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999988887                      556666655555444333321 


Q ss_pred             -------------hhhHHHHHHHHHHHHHhCc
Q psy1675         142 -------------DCSLKIAAKLVEQAFKDGT  160 (179)
Q Consensus       142 -------------~~sl~IA~~v~~~ay~~gl  160 (179)
                                   +|+++||..++.++.++|+
T Consensus       307 ~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl  338 (582)
T KOG1257|consen  307 PLSDHVILFLGAGEAALGIANLIVMAMVKEGL  338 (582)
T ss_pred             ccccceEEEecCchHHhhHHHHHHHHHHHcCC
Confidence                         2777888888888877777

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=100.00  E-value=1.9e-36  Score=280.61  Aligned_cols=112  Identities=38%  Similarity=0.679  Sum_probs=99.6

Q ss_pred             hhhhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccc
Q psy1675           9 SLYTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL   85 (179)
Q Consensus         9 ~l~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~   85 (179)
                      .+......|+...+.-+++..|++..|   ||.+||+|++||++||++||||+|++||||+||+||||++||+||+|+|+
T Consensus       136 ~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~  215 (559)
T PTZ00317        136 KIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGL  215 (559)
T ss_pred             hHHHHHhcCCccCceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccc
Confidence            344555666555566667777988888   56688999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHHhCCCceeEeccc
Q psy1675          86 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSD  121 (179)
Q Consensus        86 r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~  121 (179)
                      ||+|++|++|++|+|||+.+++++| |+++|||||+
T Consensus       216 r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf  250 (559)
T PTZ00317        216 REKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDF  250 (559)
T ss_pred             cCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhc
Confidence            9999999999999999999999999 7899888873

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=100.00  E-value=2.7e-36  Score=280.49  Aligned_cols=130  Identities=41%  Similarity=0.653  Sum_probs=106.7

Q ss_pred             hhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccccccc
Q psy1675          12 TALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQR   88 (179)
Q Consensus        12 t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~   88 (179)
                      .....++.....-+++..|++..|   ||.+||+|++||++||++||||+|+++|||+||+||||++||+||+|+|+|++
T Consensus       162 ~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~  241 (581)
T PLN03129        162 SMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQP  241 (581)
T ss_pred             HHHhcCCCcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCC
Confidence            334444445566667778998888   56688999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccccccc---c-ccCCCCCcc-cch
Q psy1675          89 RTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLD---S-GCLYPPPNI-IKD  142 (179)
Q Consensus        89 R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~~a~~---~-g~lyppl~~-Ir~  142 (179)
                      |++|++|++|+|||+++++++|||+++|||||+-..+ ++.   + ..-+|.||| ||+
T Consensus       242 Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~-af~iL~ryr~~i~~FnDDiQG  299 (581)
T PLN03129        242 RLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN-AFRLLQRYRTTHLCFNDDIQG  299 (581)
T ss_pred             CCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc-HHHHHHHhccCCCEeccccch
Confidence            9999999999999999999999999998888733322 222   1 225555665 544

>PRK13529 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-36  Score=276.71  Aligned_cols=149  Identities=38%  Similarity=0.626  Sum_probs=118.7

Q ss_pred             hhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc
Q psy1675          11 YTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ   87 (179)
Q Consensus        11 ~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~   87 (179)
                      ......+++..+.-+++..|++..|   ||.+||+|++||++||++||||+|++||||+||+||||++||+||+|+|+||
T Consensus       136 ~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~  215 (563)
T PRK13529        136 EDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRH  215 (563)
T ss_pred             HHHHhcCCcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCC
Confidence            3444555555566666777888888   6678899999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch---
Q psy1675          88 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD---  142 (179)
Q Consensus        88 ~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~---  142 (179)
                      +|++|++|++|+|||+.+++++| |+++|||||                      |+|+|+++..+.+..+++..++   
T Consensus       216 ~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~  294 (563)
T PRK13529        216 PRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLS  294 (563)
T ss_pred             CCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChh
Confidence            99999999999999999999999 899988876                      4555554444444433333211   


Q ss_pred             -----------hhHHHHHHHHHHHHHhCc
Q psy1675         143 -----------CSLKIAAKLVEQAFKDGT  160 (179)
Q Consensus       143 -----------~sl~IA~~v~~~ay~~gl  160 (179)
                                 +|++||.++.+.+.+.|+
T Consensus       295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl  323 (563)
T PRK13529        295 DQRIVFLGAGSAGCGIADQIVAAMVREGL  323 (563)
T ss_pred             hcEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence                       666777777776666665

>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=100.00  E-value=2.7e-36  Score=246.42  Aligned_cols=115  Identities=43%  Similarity=0.773  Sum_probs=87.7

Q ss_pred             hhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc
Q psy1675          11 YTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ   87 (179)
Q Consensus        11 ~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~   87 (179)
                      ......+..+..--+++..|++..+   ||.+||+|++||++||++||||+|++||||+||+||||++||+||+|+|+|+
T Consensus        56 ~~~l~n~~~~~v~v~VVTDG~rILGlGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~  135 (182)
T PF00390_consen   56 EEILRNWPERDVRVIVVTDGERILGLGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRH  135 (182)
T ss_dssp             HHHHTTSS-SS--EEEEE-SSSBTTTBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SS
T ss_pred             HHHHHhhhccCceEEEEeCchhhccccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhcccc
Confidence            3445555555555566777998888   6678899999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccc
Q psy1675          88 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTE  125 (179)
Q Consensus        88 ~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~  125 (179)
                      +|++|++|++|+|||+++++++|||++++||||+...+
T Consensus       136 ~R~~g~~y~~fvdefv~av~~~~gp~~~IqfEDf~~~n  173 (182)
T PF00390_consen  136 PRVRGEEYDEFVDEFVEAVKRRFGPNALIQFEDFSNPN  173 (182)
T ss_dssp             B---THHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCH
T ss_pred             CCCChhhhhhCHHHHHHHHHHHhCCCeEEEEecCCChh
Confidence            99999999999999999999999999999999855443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....

>KOG1257|consensus

Probab=99.96  E-value=2.1e-31  Score=244.10  Aligned_cols=170  Identities=33%  Similarity=0.482  Sum_probs=148.2

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCC--CCcccccee-----------------------------
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPS--MGIPVGKLS-----------------------------   49 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~g--mgI~~gKl~-----------------------------   49 (179)
                      ||||||||+|||+||||+|++||||+|||||||+.|+.|+  ||.+..|+.                             
T Consensus       183 mgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFED  262 (582)
T KOG1257|consen  183 MGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFED  262 (582)
T ss_pred             ccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehh
Confidence            8999999999999999999999999999999999999988  566666666                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy1675          50 --------------------------------------------------------------------------------   49 (179)
Q Consensus        50 --------------------------------------------------------------------------------   49 (179)
                                                                                                      
T Consensus       263 F~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~ee  342 (582)
T KOG1257|consen  263 FANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEE  342 (582)
T ss_pred             ccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------eeeeccCCCCCcccceeccCCCCchhcccCcccccccc----
Q psy1675          50 --------------------------------------LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ----   87 (179)
Q Consensus        50 --------------------------------------Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~----   87 (179)
                                                            |..++.-++|+.+++.+-..|++++|+|++|.-.++|+    
T Consensus       343 A~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFa  422 (582)
T KOG1257|consen  343 ARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFA  422 (582)
T ss_pred             HhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEe
Confidence                                                  77888999999999999999999999999999999998    


Q ss_pred             ----------------cCCCchhhHHHHHHHHH--HHHHHhCC----Cce--------------eEecc-----------
Q psy1675          88 ----------------RRTTGQAYDDFIEEFMQ--AVVARYGQ----HVL--------------IQTLS-----------  120 (179)
Q Consensus        88 ----------------~R~~g~~y~~f~~~f~~--av~~~y~p----~~l--------------iqFeD-----------  120 (179)
                                      +++.|++.++++++|..  .--++|.|    |++              .+..|           
T Consensus       423 lSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA  502 (582)
T KOG1257|consen  423 LSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALA  502 (582)
T ss_pred             cCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHH
Confidence                            88999999999999933  11344433    232              12233           


Q ss_pred             ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhCccccCCccceE
Q psy1675         121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLF  170 (179)
Q Consensus       121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~~~~~~~~  170 (179)
                      ..++++++++|++||||++||++|+.||.+|.+|||++|+|++.|.|+-+
T Consensus       503 ~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~  552 (582)
T KOG1257|consen  503 EQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDK  552 (582)
T ss_pred             hhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccH
Confidence            67899999999999999999999999999999999999999999999743

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=99.90  E-value=2.7e-25  Score=207.21  Aligned_cols=139  Identities=27%  Similarity=0.446  Sum_probs=124.9

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+|++|||+|||+||||+|++||||+||+|||||.|+.|++++            |++..|+      .|..|+++++  
T Consensus       194 m~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~Yl------------G~r~~Rv------~g~eY~~~~d--  253 (581)
T PLN03129        194 MGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYI------------GLRQPRL------TGEEYDELVD--  253 (581)
T ss_pred             cccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCcccc------------CcCCCCC------chhhHHHhHH--
Confidence            7999999999999999999999999999999999999999776            8999998      9999999999  


Q ss_pred             ccccccccCC-Cc--hhhHHHHHHHHHHHHHHhCCCceeEeccccccccccccccCCCCCcccch--------------h
Q psy1675          81 LYIGLRQRRT-TG--QAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------C  143 (179)
Q Consensus        81 ~yig~r~~R~-~g--~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~  143 (179)
                      -|+-..++|+ +.  -+||||..+.+..++++|+ +.+++||||+|+|+++..+.+..+++..++              +
T Consensus       254 efv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr-~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA  332 (581)
T PLN03129        254 EFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYR-TTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEA  332 (581)
T ss_pred             HHHHHHHHHhCCccEEehhhcCCccHHHHHHHhc-cCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHH
Confidence            7777777787 43  4999999999999999995 778899999999999998888877765432              9


Q ss_pred             hHHHHHHHHHHHHHh-Cc
Q psy1675         144 SLKIAAKLVEQAFKD-GT  160 (179)
Q Consensus       144 sl~IA~~v~~~ay~~-gl  160 (179)
                      |++||.++...+.++ |+
T Consensus       333 gigia~ll~~~~~~~~Gl  350 (581)
T PLN03129        333 GTGIAELIALAMSRQTGI  350 (581)
T ss_pred             HHHHHHHHHHHHHhhcCC
Confidence            999999999998864 87

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=99.83  E-value=6.9e-22  Score=183.81  Aligned_cols=118  Identities=25%  Similarity=0.260  Sum_probs=90.5

Q ss_pred             eeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH--
Q psy1675          50 LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV--  107 (179)
Q Consensus        50 Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~--  107 (179)
                      |..++.+++|+.+|+++-..|.+++|+++.|.-...|+                    +|+.|++.++.+++|..-..  
T Consensus       373 L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G  452 (559)
T PTZ00317        373 LEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNG  452 (559)
T ss_pred             HHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCC
Confidence            44566889999999999999999999999877666666                    67778888888888732211  


Q ss_pred             HHhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHh
Q psy1675         108 ARYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKD  158 (179)
Q Consensus       108 ~~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~  158 (179)
                      +.|-|    |++              -+..|           +.++++.+..+++|||+.+||++|..||..|+++||++
T Consensus       453 ~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~  532 (559)
T PTZ00317        453 KTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEM  532 (559)
T ss_pred             eeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHh
Confidence            11212    121              11122           67888889999999999999999999999999999999


Q ss_pred             CccccCCcc
Q psy1675         159 GTATKVGTA  167 (179)
Q Consensus       159 gla~~~~~~  167 (179)
                      |+|+..+.|
T Consensus       533 G~A~~~~~~  541 (559)
T PTZ00317        533 GIAKNKDLP  541 (559)
T ss_pred             CCCccCCCC
Confidence            998864333

>PRK13529 malate dehydrogenase; Provisional

Probab=99.81  E-value=1.9e-21  Score=181.06  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=89.8

Q ss_pred             eeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH--H
Q psy1675          51 YTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV--A  108 (179)
Q Consensus        51 y~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~--~  108 (179)
                      ..++.+++|+.+|+++-..|.+++|+++.|.-...|+                    +|+.|++.++.+++|..-..  +
T Consensus       375 ~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~  454 (563)
T PRK13529        375 LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGK  454 (563)
T ss_pred             HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCe
Confidence            4677889999999999999999999999887776776                    56667788888887732110  1


Q ss_pred             HhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhC
Q psy1675         109 RYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDG  159 (179)
Q Consensus       109 ~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~g  159 (179)
                      .|-|    |++              -+..|           +.++++.+..+.+|||+.+||++|..||..|+++|+++|
T Consensus       455 ~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G  534 (563)
T PRK13529        455 TYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEG  534 (563)
T ss_pred             EeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhC
Confidence            1112    121              11223           678888899999999999999999999999999999999


Q ss_pred             ccccCCccc
Q psy1675         160 TATKVGTAT  168 (179)
Q Consensus       160 la~~~~~~~  168 (179)
                      +|+. +.|+
T Consensus       535 lA~~-~~~~  542 (563)
T PRK13529        535 LARE-TSDE  542 (563)
T ss_pred             CCCC-CCHH
Confidence            9874 5443

>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=99.74  E-value=1.8e-20  Score=153.41  Aligned_cols=91  Identities=34%  Similarity=0.702  Sum_probs=72.5

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+|++|||+|||+||||+|++||||+|||||||+.|+.|++++            |++..|+      .|..|+++++  
T Consensus        89 m~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~------------G~r~~R~------~g~~y~~fvd--  148 (182)
T PF00390_consen   89 MGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYL------------GLRHPRV------RGEEYDEFVD--  148 (182)
T ss_dssp             HHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--------------S-SSB---------THHHHHHHH--
T ss_pred             EEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchh------------ccccCCC------ChhhhhhCHH--
Confidence            6899999999999999999999999999999999999999876            8999998      9999999998  


Q ss_pred             ccccccccCC-Cch--hhHHHHHHHHHHHHHHhC
Q psy1675          81 LYIGLRQRRT-TGQ--AYDDFIEEFMQAVVARYG  111 (179)
Q Consensus        81 ~yig~r~~R~-~g~--~y~~f~~~f~~av~~~y~  111 (179)
                      -++...++|+ +..  |||||..+++..++++|+
T Consensus       149 efv~av~~~~gp~~~IqfEDf~~~nAf~iL~kYr  182 (182)
T PF00390_consen  149 EFVEAVKRRFGPNALIQFEDFSNPNAFRILDKYR  182 (182)
T ss_dssp             HHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCeEEEEecCCChhHHHHHHhcC
Confidence            7777777777 555  999999999999999993

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=99.40  E-value=2.1e-14  Score=130.02  Aligned_cols=127  Identities=26%  Similarity=0.301  Sum_probs=108.0

Q ss_pred             eceEEeccCCcccccc----CCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCch--hhH
Q psy1675          23 LPITLDVGTNTQGFSK----PSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQ--AYD   96 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~----~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~--~y~   96 (179)
                      +-+++..||...|||+    .||.|..||+.||+.||||+   ++||+||+||+++ +.   .++-.-.++++|.  |++
T Consensus        78 ~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e-i~---~~Vkal~p~FgginLedi  150 (432)
T COG0281          78 LVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE-II---EFVKALEPTFGGINLEDI  150 (432)
T ss_pred             eEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-HH---HHHHHhhhcCCCcceeec
Confidence            4456777999999776    45999999999999999999   9999999999987 33   4666777888887  999


Q ss_pred             HHHHHHHHHHHHHhCCCceeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHHHHHH
Q psy1675          97 DFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVEQAFK  157 (179)
Q Consensus        97 ~f~~~f~~av~~~y~p~~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~~ay~  157 (179)
                      +|..-|....+.+|. .-+..|+||||+|+.+..+.++.+++...+              +|+.||.++.+++.+
T Consensus       151 ~ap~cf~ie~~lr~~-~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~  224 (432)
T COG0281         151 DAPRCFAIEERLRYR-MNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK  224 (432)
T ss_pred             ccchhhHHHHHHhhc-CCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC
Confidence            999999999999996 556889999999999999998888776532              888999998887765

>PRK12861 malic enzyme; Reviewed

Probab=99.16  E-value=2.2e-12  Score=124.55  Aligned_cols=123  Identities=18%  Similarity=0.171  Sum_probs=92.5

Q ss_pred             ceEEeccCCcccccc---CC-CCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHHH
Q psy1675          24 PITLDVGTNTQGFSK---PS-MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI   99 (179)
Q Consensus        24 pi~ldvGt~~~~Lg~---~g-mgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f~   99 (179)
                      -+++..||...|||.   .| |+|..||+.||+++|||+   ++||.+|. .+.++++   -++-.-.+++.+-+||||.
T Consensus        69 v~VvtdG~~vLGLGdiG~~a~~pvmeGK~~L~~~~agid---~~di~~~~-~dpd~~v---~~v~a~~~~fg~i~lED~~  141 (764)
T PRK12861         69 VGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGID---VFDIEINE-TDPDKLV---DIIAGLEPTFGGINLEDIK  141 (764)
T ss_pred             EEEEecchhhccCCCcCcccccchHHHHHHHHhhccCCC---ccccccCC-CCHHHHH---HHHHHHHhhcCCceeeecc
Confidence            556778999999766   33 777779999999999999   44444443 3334444   3555566788888999999


Q ss_pred             HHHHHHHHHHhCCC-ceeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675         100 EEFMQAVVARYGQH-VLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE  153 (179)
Q Consensus       100 ~~f~~av~~~y~p~-~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~  153 (179)
                      .+.+..++++|+.+ .+.+||||+|+|+.+..+.++.+++..++              +|++||..+..
T Consensus       142 ~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~  210 (764)
T PRK12861        142 APECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD  210 (764)
T ss_pred             CchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH
Confidence            99999999999532 36789999999999999988877765432              66777655543

>PRK12862 malic enzyme; Reviewed

Probab=99.13  E-value=3.2e-12  Score=123.67  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=92.1

Q ss_pred             eceEEeccCCcccccc---CC-CCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCC---chhh
Q psy1675          23 LPITLDVGTNTQGFSK---PS-MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTT---GQAY   95 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~---~g-mgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~---g~~y   95 (179)
                      +-+++..||+..|||.   +| |+|..||+.||+++|||+       ++|+|+||++-   .-++...+.+.+   +-+|
T Consensus        72 ~v~vvtdg~~vLGlGd~G~~~~~pv~egK~~l~~~~~gi~-------~~~i~~~~~d~---d~~v~~v~~~~p~f~~i~~  141 (763)
T PRK12862         72 LVAVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGID-------VFDIELDESDP---DKLVEIVAALEPTFGGINL  141 (763)
T ss_pred             EEEEEechhhhccccccCcccccchHHHHHHHHHhhcCCC-------ccccccCCCCH---HHHHHHHHHhCCCcceeee
Confidence            4567788999999766   43 889999999999999999       55666666622   234444444444   4499


Q ss_pred             HHHHHHHHHHHHHHhCCCc--eeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675          96 DDFIEEFMQAVVARYGQHV--LIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE  153 (179)
Q Consensus        96 ~~f~~~f~~av~~~y~p~~--liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~  153 (179)
                      |||..+.+..++++|. +.  +.+|+||+|+|+.+..+.++..++...+              +|++||..+..
T Consensus       142 ED~~~~~~f~i~~~~~-~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~  214 (763)
T PRK12862        142 EDIKAPECFYIERELR-ERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS  214 (763)
T ss_pred             ecccCchHHHHHHHHH-hcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH
Confidence            9999999999999995 55  6889999999999998888876655422              77788877765

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=99.01  E-value=1.7e-11  Score=118.42  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=90.4

Q ss_pred             eceEEeccCCccccccC----CCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCC---Cchhh
Q psy1675          23 LPITLDVGTNTQGFSKP----SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRT---TGQAY   95 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~~----gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~---~g~~y   95 (179)
                      +-+++..||...|||.-    ||++..||+.||+++|||+       ++|+|+||++.   .-++...+.+.   -+-++
T Consensus        64 ~v~vvtdg~~vLGlGd~G~~a~~pv~egK~~l~~~~~gid-------~~~i~~~~~d~---de~v~~v~~~~p~~g~i~~  133 (752)
T PRK07232         64 LVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGID-------VFDIEVDEEDP---DKFIEAVAALEPTFGGINL  133 (752)
T ss_pred             EEEEEccchhhccccccccccCccHHHHHHHHHHhhcCCC-------ccccccCCCCH---HHHHHHHHHhCCCccEEee
Confidence            35567779999997763    4666669999999999999       56777777742   13444444444   34599


Q ss_pred             HHHHHHHHHHHHHHhCCCc--eeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675          96 DDFIEEFMQAVVARYGQHV--LIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE  153 (179)
Q Consensus        96 ~~f~~~f~~av~~~y~p~~--liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~  153 (179)
                      |||..+.+..++++|+ +.  +.+|+||+|+|+.+..+.++.+++..++              +|++||..+..
T Consensus       134 ED~~~p~~f~i~~~~~-~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~  206 (752)
T PRK07232        134 EDIKAPECFYIEEKLR-ERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA  206 (752)
T ss_pred             eecCCchHHHHHHHHH-HhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH
Confidence            9999999999999995 54  4889999999999998888777665432              77777777665

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=98.08  E-value=2.8e-07  Score=80.27  Aligned_cols=120  Identities=24%  Similarity=0.304  Sum_probs=89.9

Q ss_pred             eeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH
Q psy1675          48 LSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV  107 (179)
Q Consensus        48 l~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~  107 (179)
                      -+|..++.-++|+.+|+++-..|.+++|+++.|.-...|+                    +|+.|++.++.+++|..-..
T Consensus        95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~  174 (279)
T cd05312          95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEY  174 (279)
T ss_pred             CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeee
Confidence            4678888899999999999999999999999777655666                    44456666777766632110


Q ss_pred             --HHhCCC----ce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHH
Q psy1675         108 --ARYGQH----VL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAF  156 (179)
Q Consensus       108 --~~y~p~----~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay  156 (179)
                        +.|-|+    ++              -+..|           +.++++.+..+.+||++.++|+++..+|..|+++|+
T Consensus       175 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~r~vs~~VA~aVa~~A~  254 (279)
T cd05312         175 NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNIREISAQIAVAVAKYAY  254 (279)
T ss_pred             CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHH
Confidence              112121    11              12223           567778888999999999999999999999999999


Q ss_pred             HhCccccCCcc
Q psy1675         157 KDGTATKVGTA  167 (179)
Q Consensus       157 ~~gla~~~~~~  167 (179)
                      ++|+|...+.|
T Consensus       255 ~~gla~~~~~~  265 (279)
T cd05312         255 EEGLATRYPPP  265 (279)
T ss_pred             HcCCCCCCCCH
Confidence            99998766654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.88  E-value=3.3e-07  Score=78.98  Aligned_cols=109  Identities=27%  Similarity=0.282  Sum_probs=77.9

Q ss_pred             eeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH
Q psy1675          48 LSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV  107 (179)
Q Consensus        48 l~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~  107 (179)
                      .+|..++.+++|+.+|+++-..|.+++|+++.|.-...|+                    +|..|++.++.+++|..-..
T Consensus        96 ~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~pv~~  175 (255)
T PF03949_consen   96 GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFPPVEY  175 (255)
T ss_dssp             SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS----EEE
T ss_pred             cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccCCeee
Confidence            4678899999999999999999999999999777766677                    66777788888888832100


Q ss_pred             --HHhCCC----ce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHH
Q psy1675         108 --ARYGQH----VL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAF  156 (179)
Q Consensus       108 --~~y~p~----~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay  156 (179)
                        +.|-|+    ++              -+..|           +.++++++..+.+||++.++|++|..||..|+++||
T Consensus       176 ~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~Ai  255 (255)
T PF03949_consen  176 NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFDIREVSARVAAAVAKQAI  255 (255)
T ss_dssp             TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCcHhHHHHHHHHHHHHHhC
Confidence              111111    11              00112           788888999999999999999999999999999987

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK12861 malic enzyme; Reviewed

Probab=97.35  E-value=6.8e-05  Score=73.26  Aligned_cols=93  Identities=16%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             cCCCCCcccce---------------eccCCCCchhcccCcccccccccCCCchhhHHHHHHHHHHHHHHhCCCceeEec
Q psy1675          55 AGIKPHQCLPI---------------TLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTL  119 (179)
Q Consensus        55 ~Gi~P~~~lpv---------------~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFe  119 (179)
                      |=+-|..-+||               ++|+||||    +||               ++|+ +|++++..+|| .  ||||
T Consensus        82 GdiG~~a~~pvmeGK~~L~~~~agid~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg-~--i~lE  138 (764)
T PRK12861         82 GNIGALASKPVMEGKAVLFKKFAGIDVFDIEINE----TDP---------------DKLV-DIIAGLEPTFG-G--INLE  138 (764)
T ss_pred             CCcCcccccchHHHHHHHHhhccCCCccccccCC----CCH---------------HHHH-HHHHHHHhhcC-C--ceee
Confidence            34556666787               69999998    666               8899 99999999995 5  9999


Q ss_pred             cccccccccc------cccCCCCCcc-cch------hhHHHHHHHHHHHHHhCc-------cccCCccceEE
Q psy1675         120 SDLVTEADLD------SGCLYPPPNI-IKD------CSLKIAAKLVEQAFKDGT-------ATKVGTATLFR  171 (179)
Q Consensus       120 D~~vt~~a~~------~g~lyppl~~-Ir~------~sl~IA~~v~~~ay~~gl-------a~~~~~~~~~~  171 (179)
                      |+-. ..+|.      ...-+|.|+| ||+      +++..|.++++...++..       |+++++++++.
T Consensus       139 D~~~-p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~  209 (764)
T PRK12861        139 DIKA-PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLV  209 (764)
T ss_pred             eccC-chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHH
Confidence            8544 44444      2225999999 776      777888888887777765       66677666543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.03  E-value=3.6e-05  Score=66.44  Aligned_cols=107  Identities=26%  Similarity=0.291  Sum_probs=78.8

Q ss_pred             eeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHH--
Q psy1675          49 SLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAV--  106 (179)
Q Consensus        49 ~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av--  106 (179)
                      +|-.++.-++|+.+|+++-..|.+++|+++.|.-...|+                    +|+.|++.++.+++|..-.  
T Consensus        97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~  176 (254)
T cd00762          97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELN  176 (254)
T ss_pred             CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccC
Confidence            577888889999999999999999999999887666776                    4555666666666662210  


Q ss_pred             HHHhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHH
Q psy1675         107 VARYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQA  155 (179)
Q Consensus       107 ~~~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~a  155 (179)
                      -+.|.|    |++              -+..|           +.++++++..+.+||++.+||+++..||..|+++|
T Consensus       177 g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ir~vs~~VA~aVa~~a  254 (254)
T cd00762         177 GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFDIQEVSLNIAVAVAKYA  254 (254)
T ss_pred             CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcchhhhHHHHHHHHHHHhC
Confidence            011111    111              12233           67788888999999999999999999999999864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.70  E-value=0.00077  Score=61.95  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             cccCCCCCcccchhhHHHHHHHHHHHHHhCcccc
Q psy1675         130 SGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK  163 (179)
Q Consensus       130 ~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~  163 (179)
                      .+.++|+..+.|.++. +|..|++.|.+.|+|++
T Consensus       375 ~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~  407 (432)
T COG0281         375 EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARR  407 (432)
T ss_pred             cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccC
Confidence            3679999999999999 99999999999999874

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=94.98  E-value=0.0086  Score=58.78  Aligned_cols=71  Identities=18%  Similarity=0.118  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhCCCc-eeEeccccccccccc------cccCCCCCcc-cch------hhHHHHHHHHHHHHHhCc----
Q psy1675          99 IEEFMQAVVARYGQHV-LIQTLSDLVTEADLD------SGCLYPPPNI-IKD------CSLKIAAKLVEQAFKDGT----  160 (179)
Q Consensus        99 ~~~f~~av~~~y~p~~-liqFeD~~vt~~a~~------~g~lyppl~~-Ir~------~sl~IA~~v~~~ay~~gl----  160 (179)
                      .|||+.+++.+| |+. .||||| +-...+|.      ...-+|.|+| +++      +++..|.++++.-.++..    
T Consensus       114 ~de~v~~v~~~~-p~~g~i~~ED-~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~  191 (752)
T PRK07232        114 PDKFIEAVAALE-PTFGGINLED-IKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVS  191 (752)
T ss_pred             HHHHHHHHHHhC-CCccEEeeee-cCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence            799999999999 676 999997 44555554      1223899999 766      777888888887777665    


Q ss_pred             ---cccCCccceEE
Q psy1675         161 ---ATKVGTATLFR  171 (179)
Q Consensus       161 ---a~~~~~~~~~~  171 (179)
                         |+++++++++.
T Consensus       192 GaGaag~~~a~~l~  205 (752)
T PRK07232        192 GAGAAAIACLNLLV  205 (752)
T ss_pred             CccHHHHHHHHHHH
Confidence               67777776654

>PRK12862 malic enzyme; Reviewed

Probab=94.94  E-value=0.0077  Score=59.15  Aligned_cols=70  Identities=16%  Similarity=0.036  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhCCC-ceeEeccccccccccc---c--cc-CCCCCcc-cch------hhHHHHHHHHHHHHHhCc-----
Q psy1675         100 EEFMQAVVARYGQH-VLIQTLSDLVTEADLD---S--GC-LYPPPNI-IKD------CSLKIAAKLVEQAFKDGT-----  160 (179)
Q Consensus       100 ~~f~~av~~~y~p~-~liqFeD~~vt~~a~~---~--g~-lyppl~~-Ir~------~sl~IA~~v~~~ay~~gl-----  160 (179)
                      |+|+++++.+| |+ ..|||||+. ...+|.   .  .. =+|.|+| ||+      +++..|.++++.-.++..     
T Consensus       123 d~~v~~v~~~~-p~f~~i~~ED~~-~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~G  200 (763)
T PRK12862        123 DKLVEIVAALE-PTFGGINLEDIK-APECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASG  200 (763)
T ss_pred             HHHHHHHHHhC-CCcceeeeeccc-CchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEC
Confidence            89999999999 78 799999754 444444   1  11 2899999 776      777888888887776665     


Q ss_pred             --cccCCccceEE
Q psy1675         161 --ATKVGTATLFR  171 (179)
Q Consensus       161 --a~~~~~~~~~~  171 (179)
                        |+++++++++.
T Consensus       201 aGaag~~~a~~l~  213 (763)
T PRK12862        201 AGAAALACLDLLV  213 (763)
T ss_pred             hhHHHHHHHHHHH
Confidence              66777776654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.44  E-value=0.14  Score=43.06  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             ccccccccccccCCCCCcccchhhHHHHHHHHHHH
Q psy1675         121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQA  155 (179)
Q Consensus       121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~a  155 (179)
                      +.++++++..+.+|||+.+ |++|..||..|++++
T Consensus       193 ~~~~~~~~~~~~~~P~~~~-~~~~~~va~~v~~~a  226 (226)
T cd05311         193 DLAEEEVLGEEYIIPTPFD-PRVVPRVATAVAKAA  226 (226)
T ss_pred             hhCCccccCCCcccCCCCc-hhHHHHHHHHHHHhC
Confidence            5667777889999999999 999999999998864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
1gq2_A	555	Malic Enzyme From Pigeon Liver Length = 555		5e-27
1gq2_A	555	Malic Enzyme From Pigeon Liver Length = 555		5e-04
2aw5_A	575	Crystal Structure Of A Human Malic Enzyme Length =		5e-27
2aw5_A	575	Crystal Structure Of A Human Malic Enzyme Length =		5e-06
1gz3_A	554	Molecular Mechanism For The Regulation Of Human Mit		6e-24
1llq_A	605	Crystal Structure Of Malic Enzyme From Ascaris Suum		1e-22
1do8_A	564	Crystal Structure Of A Closed Form Of Human Mitocho		3e-22
1qr6_A	584	Human Mitochondrial Nad(P)-Dependent Malic Enzyme L		8e-22
1efk_A	584	Structure Of Human Malic Enzyme In Complex With Ket		8e-22
1gz4_A	551	Molecular Mechanism Of The Regulation Of Human Mito		9e-22

>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)
Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++E
Sbjct: 156 GIPVGKLALYTACGGVKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDE 215
Query: 102 FMQAVVARYGQHVLIQ 117
           F +AV +RYG + LIQ
Sbjct: 216 FXEAVTSRYGXNCLIQ 231

>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + ++  V+E +L  G LYPP   I+  SLKIA ++ ++A+++ TA+
Sbjct: 471 EVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAS 516

>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 62/77 (80%)
Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQRR  G  YDDF++
Sbjct: 178 MGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLD 237
Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV ++YG + LIQ
Sbjct: 238 EFMEAVSSKYGMNCLIQ 254

>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + ++  V++  L+ G LYPP N I+D SLKIA K+V+ A+++ TAT
Sbjct: 494 EVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTAT 539

>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL LYTA AGI+P QCLP+ +DVGT+   LL DP Y+GL Q+R   Q YDD I+
Sbjct: 158 MGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLID 217
Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+A+  RYG++ LIQ
Sbjct: 218 EFMKAITDRYGRNTLIQ 234

>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           +GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP YIGLR +R  G+ YD  ++
Sbjct: 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLD 252
Query: 101 EFMQAVVARYGQHVLIQ 117
            FM+A   +YGQ  LIQ
Sbjct: 253 NFMKACTKKYGQKTLIQ 269

>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 158 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 217
Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 218 FXKAITDRYGRNTLIQ 233

>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 178 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237
Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 238 FXKAITDRYGRNTLIQ 253

>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 178 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237
Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 238 FXKAITDRYGRNTLIQ 253

>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)
Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 156 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 215
Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 216 FXKAITDRYGRNTLIQ 231
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	1e-42
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	3e-10
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	1e-42
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	3e-10
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	4e-42
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	5e-10

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  148 bits (376), Expect = 1e-42
 Identities = 47/77 (61%), Positives = 59/77 (76%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y+GL Q+R   Q YDD I+
Sbjct: 157 MGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLID 216

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+A+  RYG++ LIQ
Sbjct: 217 EFMKAITDRYGRNTLIQ 233

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKV 164
           + L+  +T+ +L  G LYPP   I++ S+ IA K+ E  + +  A + 
Sbjct: 476 KALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRY 523

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  147 bits (374), Expect = 1e-42
 Identities = 53/77 (68%), Positives = 64/77 (83%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++
Sbjct: 155 MGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLD 214

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV +RYG + LIQ
Sbjct: 215 EFMEAVTSRYGMNCLIQ 231

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
           + ++  V+E +L  G LYPP   I+  SLKIA ++ ++A+++ TA+ 
Sbjct: 471 EVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAST 517

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  147 bits (373), Expect = 4e-42
 Identities = 44/77 (57%), Positives = 56/77 (72%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           +GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP YIGLR +R  G+ YD  ++
Sbjct: 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLD 252

Query: 101 EFMQAVVARYGQHVLIQ 117
            FM+A   +YGQ  LIQ
Sbjct: 253 NFMKACTKKYGQKTLIQ 269

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + ++  VTE  L  G +YP    I++ S++IA ++ +  +K+GTA 
Sbjct: 508 KKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTAN 553

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	100.0
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	100.0
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	100.0
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	99.74
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	99.6
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	99.58
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	99.51
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	99.07
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.84
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.3
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.43
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.19
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.62
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	92.16

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=100.00  E-value=6.2e-35  Score=269.57  Aligned_cols=145  Identities=40%  Similarity=0.697  Sum_probs=117.5

Q ss_pred             CCCCCCeeceEEeccCCccccc---cCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCc
Q psy1675          16 GIKPHQCLPITLDVGTNTQGFS---KPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTG   92 (179)
Q Consensus        16 gi~p~~~lpi~ldvGt~~~~Lg---~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g   92 (179)
                      .++.+...-+++..|+...|||   .+||+||+||++||++||||+|+++|||+||+||||++||+||+|+|+||+|++|
T Consensus       129 n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g  208 (564)
T 1pj3_A          129 NWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRT  208 (564)
T ss_dssp             TCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCS
T ss_pred             hCCCCCceEEEEEcccccccCCCCCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCch
Confidence            3333445777888899999954   5679999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch--------
Q psy1675          93 QAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD--------  142 (179)
Q Consensus        93 ~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~--------  142 (179)
                      ++|++|+|||+++++.+|||+++|||||                      |+|+|+++..+.++.+++..++        
T Consensus       209 ~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv  288 (564)
T 1pj3_A          209 QQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKIL  288 (564)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEE
T ss_pred             hhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHcEEE
Confidence            9999999999999999999999998887                      4555555554444443333211        


Q ss_pred             ------hhHHHHHHHHHHHHHhCc
Q psy1675         143 ------CSLKIAAKLVEQAFKDGT  160 (179)
Q Consensus       143 ------~sl~IA~~v~~~ay~~gl  160 (179)
                            +|++||.++...+.+.|+
T Consensus       289 ~~GAGaAgigia~ll~~~m~~~Gl  312 (564)
T 1pj3_A          289 FLGAGEAALGIANLIVMSMVENGL  312 (564)
T ss_dssp             EECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCHHHHHHHHHHHHHHHHcCC
Confidence                  666777777766666665

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=100.00  E-value=9.4e-35  Score=267.81  Aligned_cols=150  Identities=46%  Similarity=0.731  Sum_probs=122.1

Q ss_pred             hhhcCCCCCCCeeceEEeccCCccccc---cCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc
Q psy1675          11 YTALAGIKPHQCLPITLDVGTNTQGFS---KPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ   87 (179)
Q Consensus        11 ~t~~~gi~p~~~lpi~ldvGt~~~~Lg---~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~   87 (179)
                      +.....++.+...-+++..||...|||   .+||+||+||++||++||||+|+++|||+||+||||++||+||+|+|+||
T Consensus       122 ~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~  201 (555)
T 1gq2_A          122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH  201 (555)
T ss_dssp             HHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSS
T ss_pred             HHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCC
Confidence            333334434446667788899999955   46799999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch---
Q psy1675          88 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD---  142 (179)
Q Consensus        88 ~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~---  142 (179)
                      +|++|++|++|+|||++++..+|||+++|||||                      |+|+|+.+..+.++.+++..++   
T Consensus       202 ~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~  281 (555)
T 1gq2_A          202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS  281 (555)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             CCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChh
Confidence            999999999999999999999999999888876                      5666666665555554443321   


Q ss_pred             -----------hhHHHHHHHHHHHHHhCc
Q psy1675         143 -----------CSLKIAAKLVEQAFKDGT  160 (179)
Q Consensus       143 -----------~sl~IA~~v~~~ay~~gl  160 (179)
                                 +|++||.++..++.+.|+
T Consensus       282 d~riv~~GAGaAg~gia~ll~~~~~~~G~  310 (555)
T 1gq2_A          282 DHTVLFQGAGEAALGIANLIVMAMQKEGV  310 (555)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHHTC
T ss_pred             hcEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence                       677777777777776675

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=100.00  E-value=1.4e-34  Score=268.42  Aligned_cols=149  Identities=39%  Similarity=0.676  Sum_probs=119.8

Q ss_pred             hhcCCCCCCCeeceEEeccCCcccc---ccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccccccc
Q psy1675          12 TALAGIKPHQCLPITLDVGTNTQGF---SKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQR   88 (179)
Q Consensus        12 t~~~gi~p~~~lpi~ldvGt~~~~L---g~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~   88 (179)
                      .....+..+...-+++..||...||   |.+||+||+||++||++||||+|+++|||+||+||||++||+||+|+|+||+
T Consensus       161 ~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~  240 (605)
T 1o0s_A          161 QILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHK  240 (605)
T ss_dssp             HHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSC
T ss_pred             HHHhcCCCCCceEEEEEccccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCC
Confidence            3333344445677778889999995   4567999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch----
Q psy1675          89 RTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD----  142 (179)
Q Consensus        89 R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~----  142 (179)
                      |++|++|++|+|||++++..+|||+++|||||                      |+|+|+++..+.++.+++..++    
T Consensus       241 Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d  320 (605)
T 1o0s_A          241 RVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQ  320 (605)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred             CCChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhh
Confidence            99999999999999999999999999988877                      5555555555554444433211    


Q ss_pred             ----------hhHHHHHHHHHHHHHhCc
Q psy1675         143 ----------CSLKIAAKLVEQAFKDGT  160 (179)
Q Consensus       143 ----------~sl~IA~~v~~~ay~~gl  160 (179)
                                +|++||..+..++.+.|+
T Consensus       321 ~riv~~GAGaAgigia~ll~~~m~~~Gl  348 (605)
T 1o0s_A          321 EKYLFFGAGAASTGIAEMIVHQMQNEGI  348 (605)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHTTTC
T ss_pred             cEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence                      666777777776666665

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=99.74  E-value=1.1e-19  Score=168.90  Aligned_cols=115  Identities=20%  Similarity=0.254  Sum_probs=84.5

Q ss_pred             eeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHH------
Q psy1675          50 LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFM------  103 (179)
Q Consensus        50 Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~------  103 (179)
                      |..+..+++|+..|+++...|.+++|+++.|.-...|+                    +|+.|++.++.+++|.      
T Consensus       390 L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF~pV~~~G  469 (605)
T 1o0s_A          390 ILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNG  469 (605)
T ss_dssp             HHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETT
T ss_pred             HHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCCCCeeECC
Confidence            55566678899999999999999999998666444554                    3455666666666540      


Q ss_pred             ------------------HHHHHHhCCCceeEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHH
Q psy1675         104 ------------------QAVVARYGQHVLIQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQ  154 (179)
Q Consensus       104 ------------------~av~~~y~p~~liqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~  154 (179)
                                        ..++..- .+   +.+|           ++++++.+..+.+||++.+||++|..||..|+++
T Consensus       470 rs~~pnQ~NN~liFPGi~lGal~~~-A~---~Itd~M~~aAA~aLA~~v~~~~~~~~~i~P~~~dir~vs~~VA~AVa~~  545 (605)
T 1o0s_A          470 HTYKPGQGNNAYIFPGVALGTILFQ-IR---HVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKY  545 (605)
T ss_dssp             EEECCEECCGGGTHHHHHHHHHHHT-BS---CCCHHHHHHHHHHHHHTCCHHHHTTTCCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             EEeccccccceeeccchhhhhhhcC-Ce---EcCHHHHHHHHHHHHhhcccccCCCCcccCCcchhhHhHHHHHHHHHHH
Confidence                              1111111 01   1123           6777888889999999999999999999999999


Q ss_pred             HHHhCccccCCccc
Q psy1675         155 AFKDGTATKVGTAT  168 (179)
Q Consensus       155 ay~~gla~~~~~~~  168 (179)
                      |+++|+|+..+.|+
T Consensus       546 A~~~GvA~~~~~~~  559 (605)
T 1o0s_A          546 CYKNGTANLYPQPE  559 (605)
T ss_dssp             HHHTTCBCSSSCCS
T ss_pred             HHHcCCCCCCCChH
Confidence            99999998766654

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=99.60  E-value=3.7e-17  Score=151.31  Aligned_cols=93  Identities=33%  Similarity=0.595  Sum_probs=85.0

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+|||||++|||+||||+|++|+||+||+||||+.|+.|++++            |++..|+      .|..|++|+|  
T Consensus       157 m~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYl------------G~r~~Rv------~g~eYd~fvd--  216 (564)
T 1pj3_A          157 MGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYM------------GLYQKRD------RTQQYDDLID--  216 (564)
T ss_dssp             GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCC------------SCSSCCC------CSHHHHHHHH--
T ss_pred             ccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCccc------------CcCCCCC------chhhHHHHHH--
Confidence            6899999999999999999999999999999999999999877            8999998      9999999998  


Q ss_pred             ccccccccCCCc---hhhHHHHHHHHHHHHHHhCCC
Q psy1675          81 LYIGLRQRRTTG---QAYDDFIEEFMQAVVARYGQH  113 (179)
Q Consensus        81 ~yig~r~~R~~g---~~y~~f~~~f~~av~~~y~p~  113 (179)
                      -++...++++.+   -+||||..+.+..++++|+.+
T Consensus       217 efv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~  252 (564)
T 1pj3_A          217 EFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREK  252 (564)
T ss_dssp             HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccC
Confidence            777777777755   499999999999999999754

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=99.58  E-value=5.7e-17  Score=149.72  Aligned_cols=93  Identities=39%  Similarity=0.691  Sum_probs=84.4

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+||+||++|||+||||+|++|+||+||+||||+.|+.|++++            |++..|+      .|..|++|+|  
T Consensus       155 ~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYl------------G~r~~Rv------~g~eyd~fvd--  214 (555)
T 1gq2_A          155 MGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYI------------GLRHKRI------RGQAYDDLLD--  214 (555)
T ss_dssp             GHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCC------------SCSSCCC------CTHHHHHHHH--
T ss_pred             cccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccC------------CcCCCCC------chHHHHHHHH--
Confidence            6899999999999999999999999999999999999999877            8999998      9999999998  


Q ss_pred             ccccccccCC-C--chhhHHHHHHHHHHHHHHhCCC
Q psy1675          81 LYIGLRQRRT-T--GQAYDDFIEEFMQAVVARYGQH  113 (179)
Q Consensus        81 ~yig~r~~R~-~--g~~y~~f~~~f~~av~~~y~p~  113 (179)
                      -++...++++ +  +-+||||..+.+..++++|+.+
T Consensus       215 efv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~  250 (555)
T 1gq2_A          215 EFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNK  250 (555)
T ss_dssp             HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhcc
Confidence            6776667676 3  4599999999999999999754

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=99.51  E-value=7.3e-17  Score=146.85  Aligned_cols=125  Identities=17%  Similarity=0.143  Sum_probs=98.2

Q ss_pred             eceEEeccCCcccccc----CCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccC-cccc---cccccCCCchh
Q psy1675          23 LPITLDVGTNTQGFSK----PSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDD-PLYI---GLRQRRTTGQA   94 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~----~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d-~~yi---g~r~~R~~g~~   94 (179)
                      +-+++..||...|||.    +||+|+.||++||++||||+   +|||+||+||++  +++| ..++   -...+++.+-+
T Consensus        92 ~VaVVTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d~defve~v~~~~P~fG~In  166 (487)
T 3nv9_A           92 FVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICIDSKNKE--GKNDPDAVIEFVQRIQHTFGAIN  166 (487)
T ss_dssp             EEEEEECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBCHHHHHHHHHHHGGGCSEEE
T ss_pred             EEEEEEcCceeeeccccccccCCchhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCCHHHHHHHHHHhCCCCCeec
Confidence            4567788999999655    46999999999999999999   999999999755  3444 2333   23335555669


Q ss_pred             hHHHHHHHHHHHHHHhCCC--ceeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675          95 YDDFIEEFMQAVVARYGQH--VLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE  153 (179)
Q Consensus        95 y~~f~~~f~~av~~~y~p~--~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~  153 (179)
                      ||||..+.+..+++||+ +  .+.+||||+|+|+.+..+.++.+++..++              +|++||..+..
T Consensus       167 lEDf~ap~af~il~ryr-~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~  240 (487)
T 3nv9_A          167 LEDISQPNCYKILDVLR-ESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT  240 (487)
T ss_dssp             ECSCCTTHHHHHHHHHH-HHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred             HhhcCCchHHHHHHHHH-hhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence            99999999999999995 5  46789999999999998887776665422              78888888764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=99.07  E-value=9.3e-13  Score=117.92  Aligned_cols=123  Identities=20%  Similarity=0.287  Sum_probs=90.4

Q ss_pred             eceEEeccCCccccccC----CCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHH
Q psy1675          23 LPITLDVGTNTQGFSKP----SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDF   98 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~~----gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f   98 (179)
                      .-+++..|+...+||.-    ||+|..||+.||++||||+   ++||+||+|+ .+|+++   ++-...+.+.+-++|||
T Consensus        67 ~V~VvTdG~~iLGLGD~G~~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~-~dEfv~---~v~~~~p~F~~I~lED~  139 (398)
T 2a9f_A           67 TVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD-TEEIIS---IVKALAPTFGGINLEDI  139 (398)
T ss_dssp             EEEEEECSSSCTTSCCCCHHHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC-HHHHHH---HHHHHGGGCSEEEECSC
T ss_pred             EEEEEECCccccCCCCcccccCCcchhCHHHHHHhccCCc---eeeeEeCCCC-HHHHHH---HHHHcCCceeEeccccC
Confidence            34466679999887764    4778889999999999999   9999999997 555543   23333455566688888


Q ss_pred             HHHHHHHHHHHhCCCc--eeEeccccccccccccccCCCCCcccc--------------hhhHHHHHHHHH
Q psy1675          99 IEEFMQAVVARYGQHV--LIQTLSDLVTEADLDSGCLYPPPNIIK--------------DCSLKIAAKLVE  153 (179)
Q Consensus        99 ~~~f~~av~~~y~p~~--liqFeD~~vt~~a~~~g~lyppl~~Ir--------------~~sl~IA~~v~~  153 (179)
                      ..+.+..++++|+ +.  +..|+||+|+|+.+..+.++..++..+              .+|+.+|..+..
T Consensus       140 ~~p~~f~il~~~r-~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~  209 (398)
T 2a9f_A          140 SAPRCFEIEQRLI-KECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLA  209 (398)
T ss_dssp             CTTHHHHHHHHHH-HHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHhh-hcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHH
Confidence            8888888888885 44  678999999998888766655444321              166676666655

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.84  E-value=5.1e-10  Score=99.94  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             eceEEeccCCccccccC----CCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHH
Q psy1675          23 LPITLDVGTNTQGFSKP----SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDF   98 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~~----gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f   98 (179)
                      .-+++..|+...+||.-    ||+|..||+.||++||||+   ++||+||+|+ .+|+++   ++-...+.+.+-+++||
T Consensus        71 ~V~VvTdg~~vLGlGD~G~~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~-~dE~v~---~vk~~~p~f~~i~lED~  143 (388)
T 1vl6_A           71 TVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADID---AFPICLSESE-EEKIIS---IVKSLEPSFGGINLEDI  143 (388)
T ss_dssp             EEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC-HHHHHH---HHHHTGGGCSEEEECSC
T ss_pred             eEEEEECCccccCCCccccccCCcchhCHHHHHHhccCCc---eEeEEeCCCC-HHHHHH---HHHHcCCcceEeCHhhc
Confidence            34456679988887764    4778889999999999999   9999999997 555543   22233344455688888


Q ss_pred             HHHHHHHHHHHhCCC-ceeEeccccccccccccccCCCCCc
Q psy1675          99 IEEFMQAVVARYGQH-VLIQTLSDLVTEADLDSGCLYPPPN  138 (179)
Q Consensus        99 ~~~f~~av~~~y~p~-~liqFeD~~vt~~a~~~g~lyppl~  138 (179)
                      ..+.+..+.++|+.+ .+..|+||+++++.+..+.++..++
T Consensus       144 ~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~  184 (388)
T 1vl6_A          144 GAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALK  184 (388)
T ss_dssp             CTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHH
Confidence            888888888888522 2677889999988877666544333

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.30  E-value=4.9e-09  Score=93.59  Aligned_cols=28  Identities=32%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccC
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGT   31 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt   31 (179)
                      |+|+.||+.||+.||||+   |+||+||+|+
T Consensus        93 ~pI~egK~~Lf~~~agid---~~pi~ldv~~  120 (388)
T 1vl6_A           93 LPVMEGKAFLFKAFADID---AFPICLSESE  120 (388)
T ss_dssp             HHHHHHHHHHHHHHHCCE---EEEEECSCCC
T ss_pred             CcchhCHHHHHHhccCCc---eEeEEeCCCC
Confidence            356779999999999999   9999999997

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.43  E-value=1.8e-05  Score=72.26  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=38.1

Q ss_pred             ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhCccccC
Q psy1675         121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKV  164 (179)
Q Consensus       121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~~  164 (179)
                      +.++++.+..+.+||++.+ ++++..||..|+++|+++|+|+.-
T Consensus       392 ~~v~~~~l~~~~i~P~~~d-~~Vs~~VA~AVa~aA~~~GvA~~~  434 (487)
T 3nv9_A          392 EFAEKRGINPDNIIGTMDE-PGIFPKEAADVAMQAIKDGVARVT  434 (487)
T ss_dssp             HHHHHTCCBTTBCSCCTTC-TTHHHHHHHHHHHHHHHHTCCSCC
T ss_pred             hhCCcccCCCCceeCCccc-cchHHHHHHHHHHHHHHhCCCCCC
Confidence            5667778889999999999 589999999999999999998754

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.19  E-value=3.2e-06  Score=76.40  Aligned_cols=105  Identities=15%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             eceEEeccCCccccccCC----CCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHH
Q psy1675          23 LPITLDVGTNTQGFSKPS----MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDF   98 (179)
Q Consensus        23 lpi~ldvGt~~~~Lg~~g----mgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f   98 (179)
                      .-+++..||...+||.-|    +.+..+|+.||+.+||++   ++|+.+|+ ++.++|.+  ..-+.+ ..+.|-++|||
T Consensus        65 ~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid---~~yi~ldv-~d~de~~~--~v~~l~-~~f~GinvED~  137 (439)
T 2dvm_A           65 LVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVD---AFPIMIKE-QEPNKFID--IVKAIA-PTFGGINLEDI  137 (439)
T ss_dssp             EEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCE---EEEEECSC-CSHHHHHH--HHHHTG-GGCSEEEECSC
T ss_pred             EEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCC---Ceeeeeec-CCHHHHHH--HHHHhC-ccCcEEEEEeC
Confidence            445677788888866644    677779999999999997   89999998 45566665  444444 45678899999


Q ss_pred             HHHHHHHHHHHhCC--CceeEeccccccccccccccCCC
Q psy1675          99 IEEFMQAVVARYGQ--HVLIQTLSDLVTEADLDSGCLYP  135 (179)
Q Consensus        99 ~~~f~~av~~~y~p--~~liqFeD~~vt~~a~~~g~lyp  135 (179)
                      -.++.+.+.+++.+  |+ +.|+||++++++.+..-+..
T Consensus       138 T~P~k~~il~~l~~avNt-~vf~dD~~gtgntd~aG~~~  175 (439)
T 2dvm_A          138 ASPKCFYILERLREELDI-PVFHDDQQGTAAVVLAGLLN  175 (439)
T ss_dssp             CTTHHHHHHHHHHHHCSS-CEEEHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcCE-EEEeCCCcEEeehHHHHHHH
Confidence            99999999999953  33 66999999988666444433

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.62  E-value=0.0019  Score=57.74  Aligned_cols=38  Identities=16%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhC
Q psy1675         121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDG  159 (179)
Q Consensus       121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~g  159 (179)
                      +.++++.+..+.+||++.+ ++++..+|..|+++|++..
T Consensus       354 ~~~~~~~~~~~~i~P~~~~-~~v~~~VA~aVa~~A~~~~  391 (398)
T 2a9f_A          354 SLVPDDALSTTNIIPDAFK-EGVAEIVAKSVRSVVLKSE  391 (398)
T ss_dssp             HTCSSCSSCCSCCSCSSTT-HHHHHHHTTTTCCCCC---
T ss_pred             hcCCcccCCCCccCCCCCc-chhHHHHHHHHHHHHHHhC
Confidence            5677778889999999999 9999999999999888653

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=92.16  E-value=0.11  Score=46.66  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=34.2

Q ss_pred             ccccCCCCCcccchhhHHHHHHHHHHHHHhCccccCCccc
Q psy1675         129 DSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTAT  168 (179)
Q Consensus       129 ~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~~~~~~  168 (179)
                      ..+.+||++.+ ++++..+|..|+++|+++|+|+....|+
T Consensus       367 ~~~~i~P~~~~-~~v~~~va~av~~~a~~~g~a~~~~~~~  405 (439)
T 2dvm_A          367 SEENIIPSPLN-PIVYAREARAVAEEAMKEGVARTKVKGE  405 (439)
T ss_dssp             BTTBCSCCTTC-HHHHHHHHHHHHHHHHHHTCCSSCCCHH
T ss_pred             cCCccCCCccc-chhhHHHHHHHHHHHHHhCCCCCCCChH
Confidence            67889999999 9999999999999999999987544343

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1o0sa2	294	c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent	5e-37
d1gq2a2	257	c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent	3e-36
d1pj3a2	259	c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent	2e-35
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	5e-09
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	1e-08
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	5e-08

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score =  127 bits (320), Expect = 5e-37
 Identities = 44/78 (56%), Positives = 56/78 (71%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            +GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP YIGLR +R  G+ YD  +
Sbjct: 191 GIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLL 250

Query: 100 EEFMQAVVARYGQHVLIQ 117
           + FM+A   +YGQ  LIQ
Sbjct: 251 DNFMKACTKKYGQKTLIQ 268

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score =  124 bits (313), Expect = 3e-36
 Identities = 53/78 (67%), Positives = 64/78 (82%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            MGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD +
Sbjct: 154 GMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLL 213

Query: 100 EEFMQAVVARYGQHVLIQ 117
           +EFM+AV +RYG + LIQ
Sbjct: 214 DEFMEAVTSRYGMNCLIQ 231

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 2e-35
 Identities = 47/78 (60%), Positives = 59/78 (75%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            MGIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y+GL Q+R   Q YDD I
Sbjct: 156 GMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLI 215

Query: 100 EEFMQAVVARYGQHVLIQ 117
           +EFM+A+  RYG++ LIQ
Sbjct: 216 DEFMKAITDRYGRNTLIQ 233

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKV 164
           + L+  +T+ +L  G LYPP   I++ S+ IA K+ E  + +  A + 
Sbjct: 217 KALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRY 264

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
           + ++  V+E +L  G LYPP   I+  SLKIA ++ ++A+++ TA+ 
Sbjct: 214 EVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAST 260

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
           + ++  VTE  L  G +YP    I++ S++IA ++ +  +K+GTA  
Sbjct: 213 KKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANL 259

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1gq2a2	257	Mitochondrial NAD(P)-dependent malic enzyme {Domes	100.0
d1pj3a2	259	Mitochondrial NAD(P)-dependent malic enzyme {Human	100.0
d1o0sa2	294	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	100.0
d1gq2a2	257	Mitochondrial NAD(P)-dependent malic enzyme {Domes	99.85
d1pj3a2	259	Mitochondrial NAD(P)-dependent malic enzyme {Human	99.83
d1o0sa2	294	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	99.82
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	98.37
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	98.32
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	98.29

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=100.00  E-value=3e-36  Score=253.31  Aligned_cols=114  Identities=51%  Similarity=0.833  Sum_probs=99.6

Q ss_pred             hhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccccccc
Q psy1675          12 TALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQR   88 (179)
Q Consensus        12 t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~   88 (179)
                      .....|..+.+--|++..|++..|   ||++||+|++||++|||+||||+|++||||+||+||||++||+||+|+|+|++
T Consensus       123 ~il~nwp~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~gKl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~  202 (257)
T d1gq2a2         123 TMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHK  202 (257)
T ss_dssp             HHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSC
T ss_pred             HHHHhCCCCCeeEEEEecCceeeecCCcCcCccchhhhHHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCC
Confidence            444444333344455666888777   67788999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccc
Q psy1675          89 RTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTE  125 (179)
Q Consensus        89 R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~  125 (179)
                      |++|++|++|+|||++++.++|+|+++|||||+...+
T Consensus       203 R~~g~eY~~fvdefv~av~~~~p~~~~i~~EDf~~~n  239 (257)
T d1gq2a2         203 RIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANAN  239 (257)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHhCCCCCEEehhhcCCch
Confidence            9999999999999999999999889999999865554

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-36  Score=251.47  Aligned_cols=114  Identities=43%  Similarity=0.749  Sum_probs=99.9

Q ss_pred             hhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccccccc
Q psy1675          12 TALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQR   88 (179)
Q Consensus        12 t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~   88 (179)
                      .....|+-..+--|++..|++..|   ||++||+|++||++|||+||||+|++||||+||+||||++||+||+|+|+|++
T Consensus       125 ~il~nwp~~~v~~ivVTDG~rILGlGDlG~~Gm~I~~gKl~lyta~~Gi~P~~~lPv~lDvGTnNe~LL~DP~YlG~R~~  204 (259)
T d1pj3a2         125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQK  204 (259)
T ss_dssp             HHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSC
T ss_pred             HHHHhCCccCceEEEEecCceeecccccCcchhhHHHhHHHHHHHcCCCChhhccceEEecCCcHHHHhcCcccccccCC
Confidence            344444333344455666888777   67788999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccc
Q psy1675          89 RTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTE  125 (179)
Q Consensus        89 R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~  125 (179)
                      |.+|++|++|+|||+.+++++|||++++||||+...+
T Consensus       205 R~~g~~Yd~fidefv~av~~~~gp~~li~~EDf~~~n  241 (259)
T d1pj3a2         205 RDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHN  241 (259)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHhcCCCcEEehhhcCCch
Confidence            9999999999999999999999999999999865555

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=100.00  E-value=1.5e-35  Score=252.60  Aligned_cols=117  Identities=42%  Similarity=0.782  Sum_probs=103.5

Q ss_pred             hhhhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccc
Q psy1675           9 SLYTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL   85 (179)
Q Consensus         9 ~l~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~   85 (179)
                      .+......|....+--|++..|+++.|   ||++||+|++||++|||+||||+|++||||+||+||||++||+||+|+|+
T Consensus       157 ~i~~il~nwp~~~V~~iVVTDG~rILGlGDlG~~Gm~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYlG~  236 (294)
T d1o0sa2         157 KIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGL  236 (294)
T ss_dssp             HHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSC
T ss_pred             hHHHHHhcCCcccceEEEEecCcceecccCcCcccchhhhhHHHHHHHhcCCChhhccceEeecCCChHHhhcCcccccc
Confidence            345555665545455566777888877   67788999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccc
Q psy1675          86 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTE  125 (179)
Q Consensus        86 r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~  125 (179)
                      |++|.+|++|++|+|||+.|+.++|||+++|||||+...+
T Consensus       237 R~~R~~g~~Yd~fidefv~av~~~fgp~~li~~EDf~~~n  276 (294)
T d1o0sa2         237 RHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPN  276 (294)
T ss_dssp             SSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHhhCCCCEEeehhCCChh
Confidence            9999999999999999999999999999999999865554

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=99.85  E-value=1.2e-23  Score=176.30  Aligned_cols=100  Identities=37%  Similarity=0.633  Sum_probs=91.4

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+|++|||+|||+||||+|++||||+|||||||+.|+.|++++            |.+..|+      .|..|+++++  
T Consensus       155 m~I~~gKl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~Yl------------G~R~~R~------~g~eY~~fvd--  214 (257)
T d1gq2a2         155 MGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYI------------GLRHKRI------RGQAYDDLLD--  214 (257)
T ss_dssp             GHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCC------------SCSSCCC------CTHHHHHHHH--
T ss_pred             cchhhhHHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccc------------cccCCCC------cchHHHHHHH--
Confidence            7899999999999999999999999999999999999999877            8899998      9999999998  


Q ss_pred             ccccccccCCCc-h--hhHHHHHHHHHHHHHHhCCCceeEeccc
Q psy1675          81 LYIGLRQRRTTG-Q--AYDDFIEEFMQAVVARYGQHVLIQTLSD  121 (179)
Q Consensus        81 ~yig~r~~R~~g-~--~y~~f~~~f~~av~~~y~p~~liqFeD~  121 (179)
                      -|+...+++++. .  +||||..+.+..++++|+ +.+++||||
T Consensus       215 efv~av~~~~p~~~~i~~EDf~~~na~~~L~~yr-~~~~~FNDD  257 (257)
T d1gq2a2         215 EFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYR-NKYCTFNDD  257 (257)
T ss_dssp             HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHT-TTSEEEETT
T ss_pred             HHHHHHHHhCCCCCEEehhhcCCchHHHHHHHHc-cCCCccCCC
Confidence            777666666663 3  999999999999999995 788999997

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-23  Score=173.07  Aligned_cols=100  Identities=32%  Similarity=0.552  Sum_probs=91.0

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+|++|||+|||+||||+|++||||+|||||||+.|+.|++++            |++..|+      .|..|+++++  
T Consensus       157 m~I~~gKl~lyta~~Gi~P~~~lPv~lDvGTnNe~LL~DP~Yl------------G~R~~R~------~g~~Yd~fid--  216 (259)
T d1pj3a2         157 MGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYM------------GLYQKRD------RTQQYDDLID--  216 (259)
T ss_dssp             GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCC------------SCSSCCC------CSHHHHHHHH--
T ss_pred             hhHHHhHHHHHHHcCCCChhhccceEEecCCcHHHHhcCcccc------------cccCCCC------cchHHHHHHH--
Confidence            7899999999999999999999999999999999999999877            8999998      9999999998  


Q ss_pred             ccccccccCC-Cch--hhHHHHHHHHHHHHHHhCCCceeEeccc
Q psy1675          81 LYIGLRQRRT-TGQ--AYDDFIEEFMQAVVARYGQHVLIQTLSD  121 (179)
Q Consensus        81 ~yig~r~~R~-~g~--~y~~f~~~f~~av~~~y~p~~liqFeD~  121 (179)
                      -|+...++++ +..  |||||..+.+..++++|+ +.+++||||
T Consensus       217 efv~av~~~~gp~~li~~EDf~~~na~~~L~~yr-~~~~~fNDD  259 (259)
T d1pj3a2         217 EFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYR-EKYCTFNDD  259 (259)
T ss_dssp             HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHT-TTSSEEEHH
T ss_pred             HHHHHHHHhcCCCcEEehhhcCCchHHHHHHHhc-cCCCccCCC
Confidence            6666666665 544  999999999999999996 778999997

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=99.82  E-value=9.3e-23  Score=173.32  Aligned_cols=100  Identities=32%  Similarity=0.607  Sum_probs=91.1

Q ss_pred             CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675           1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP   80 (179)
Q Consensus         1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~   80 (179)
                      |+|++|||+|||+||||+|++||||+|||||||+.|+.|++++            |++..|+      .|..|+++++  
T Consensus       192 m~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYl------------G~R~~R~------~g~~Yd~fid--  251 (294)
T d1o0sa2         192 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYI------------GLRHKRV------RGKDYDTLLD--  251 (294)
T ss_dssp             GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCC------------SCSSCCC------CSHHHHHHHH--
T ss_pred             chhhhhHHHHHHHhcCCChhhccceEeecCCChHHhhcCcccc------------cccCCCC------CchHHHHHHH--
Confidence            7899999999999999999999999999999999999999877            9999998      9999999998  


Q ss_pred             ccccccccCC-Cch--hhHHHHHHHHHHHHHHhCCCceeEeccc
Q psy1675          81 LYIGLRQRRT-TGQ--AYDDFIEEFMQAVVARYGQHVLIQTLSD  121 (179)
Q Consensus        81 ~yig~r~~R~-~g~--~y~~f~~~f~~av~~~y~p~~liqFeD~  121 (179)
                      -|+...++++ +..  +||||..+.+..++++|+ +.+++||||
T Consensus       252 efv~av~~~fgp~~li~~EDf~~~nA~~iL~kyr-~~~~~FNDD  294 (294)
T d1o0sa2         252 NFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQ-DKYTMFNDD  294 (294)
T ss_dssp             HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHT-TTSEEEEHH
T ss_pred             HHHHHHHHhhCCCCEEeehhCCChhHHHHHHHhc-ccCCccCCC
Confidence            6776666665 554  999999999999999995 788999997

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=98.37  E-value=1.9e-09  Score=91.28  Aligned_cols=119  Identities=26%  Similarity=0.324  Sum_probs=88.9

Q ss_pred             eeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH--
Q psy1675          50 LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV--  107 (179)
Q Consensus        50 Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~--  107 (179)
                      +-.+...++|+.+|+++-..|.+++|++++|.-+..|+                    +|+.|++.++.+++|.....  
T Consensus        95 l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~G~ai~AsGspf~pv~~~~  174 (298)
T d1gq2a1          95 LEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPS  174 (298)
T ss_dssp             HHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTT
T ss_pred             hHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcccceEEeecCCCCCeEecC
Confidence            44667789999999999999999999998777666666                    45555555666666621110  


Q ss_pred             -HHhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHHH
Q psy1675         108 -ARYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFK  157 (179)
Q Consensus       108 -~~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~  157 (179)
                       +.|-|    |++              -+..|           +.++++++..+.+||++.++|++|..||..|+++|++
T Consensus       175 Grs~~pnQ~NN~~~FPGiglGal~~~A~~Itd~M~~aAA~alA~~v~~~~l~~g~i~P~~~~ir~vs~~VA~aVa~~A~~  254 (298)
T d1gq2a1         175 GQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYR  254 (298)
T ss_dssp             SCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCCHHHHHHTCSSCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCchhhhhhhHHHHHHHhhhhhCCHHHHHHHHHHHHHhcchhcCCCCceeCCcchHHHhHHHHHHHHHHHHHH
Confidence             11111    111              11122           6788889999999999999999999999999999999


Q ss_pred             hCccccCCccc
Q psy1675         158 DGTATKVGTAT  168 (179)
Q Consensus       158 ~gla~~~~~~~  168 (179)
                      +|+|++.+.|+
T Consensus       255 ~GvA~~~~~~~  265 (298)
T d1gq2a1         255 NNTASTYPQPE  265 (298)
T ss_dssp             TTCCCCSSCCS
T ss_pred             cCCCCCCCChH
Confidence            99999988876

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.4e-09  Score=88.26  Aligned_cols=121  Identities=20%  Similarity=0.220  Sum_probs=86.2

Q ss_pred             eeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH-
Q psy1675          49 SLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV-  107 (179)
Q Consensus        49 ~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~-  107 (179)
                      +|-.+..-++|+.+|+++-..|.+++++++-|.-++.|+                    +|+.|++.++.+++|..... 
T Consensus        97 ~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~grai~asGspf~~v~~~  176 (294)
T d1pj3a1          97 TFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLT  176 (294)
T ss_dssp             SHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECT
T ss_pred             HHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhccCceEeecCCccCCeEeC
Confidence            355555667999999999999999999996554455555                    33444445555555522110 


Q ss_pred             --HHhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHH
Q psy1675         108 --ARYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAF  156 (179)
Q Consensus       108 --~~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay  156 (179)
                        +.|-|    |++              -+..|           +.++++++..+.+||++.++|++|..||..|+++|+
T Consensus       177 ~Gr~~~pnQ~NN~~iFPGiglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l~~~~i~P~~~~ir~vs~~VA~aVa~~A~  256 (294)
T d1pj3a1         177 DGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLY  256 (294)
T ss_dssp             TSCEECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTTCCHHHHHTTCSSCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCcEecCCCCceeccccchhhHHHhcCCCCcCHHHHHHHHHHHHhhCCccccCCCeecCCCccHHHHHHHHHHHHHHHHH
Confidence              11111    111              11123           678888999999999999999999999999999999


Q ss_pred             HhCccccCCccce
Q psy1675         157 KDGTATKVGTATL  169 (179)
Q Consensus       157 ~~gla~~~~~~~~  169 (179)
                      +.|+|++.+.|+-
T Consensus       257 ~~g~A~~~~~~~~  269 (294)
T d1pj3a1         257 ANKMAFRYPEPED  269 (294)
T ss_dssp             HTTCCCCSSCCSS
T ss_pred             HcCCCCCCCChHH
Confidence            9999999888763

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=98.29  E-value=1.8e-08  Score=85.46  Aligned_cols=115  Identities=20%  Similarity=0.261  Sum_probs=84.0

Q ss_pred             eeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHH-----
Q psy1675          50 LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQ-----  104 (179)
Q Consensus        50 Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~-----  104 (179)
                      |-.+..+++|+.+++++...|.+++++++.|.-+..|+                    +|..|+..++.+++|..     
T Consensus        95 l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~eda~~~t~G~ai~AtGSpfp~V~~~G  174 (308)
T d1o0sa1          95 ILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNG  174 (308)
T ss_dssp             HHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETT
T ss_pred             HHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCCCCCHHHHHhhccCcEEEecCCCCCCeeecC
Confidence            55667889999999999999999999997665555555                    23334444444444311     


Q ss_pred             -------------------HHHHHhCCCceeEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHH
Q psy1675         105 -------------------AVVARYGQHVLIQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQ  154 (179)
Q Consensus       105 -------------------av~~~y~p~~liqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~  154 (179)
                                         .++..- .+   +..|           +.++++.+..+.+||++.++|++|..||..|+++
T Consensus       175 r~~~p~Q~NN~liFPGIglGal~~~-A~---~Itd~M~~aAA~aLA~~v~~~~l~~g~i~P~~~~~r~vs~~VA~AVa~~  250 (308)
T d1o0sa1         175 HTYKPGQGNNAYIFPGVALGTILFQ-IR---HVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKY  250 (308)
T ss_dssp             EEECCEECCGGGTHHHHHHHHHHHT-BS---CCCHHHHHHHHHHHHHTCCHHHHTTTCCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             ceecccccceeeeccchheeeeecc-cc---cCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCccHhhhhHHHHHHHHHH
Confidence                               011000 00   0122           6788889999999999999999999999999999


Q ss_pred             HHHhCccccCCccc
Q psy1675         155 AFKDGTATKVGTAT  168 (179)
Q Consensus       155 ay~~gla~~~~~~~  168 (179)
                      |+++|+|+..+.||
T Consensus       251 A~~~GvA~~~~~~~  264 (308)
T d1o0sa1         251 CYKNGTANLYPQPE  264 (308)
T ss_dssp             HHHTTCBCSSSCCS
T ss_pred             HHHcCCCCCCCChH
Confidence            99999999877776